HHsearch alignment for GI: 254780694 and conserved domain: TIGR01884
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein; InterPro: IPR010163 Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity..
Probab=97.33 E-value=0.00058 Score=44.31 Aligned_cols=48 Identities=27% Similarity=0.291 Sum_probs=42.6
Q ss_pred CCCCCCCCHHHHHHHHHHHC--C-CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 79888889779999999985--9-997999999499988999999999998
Q gi|254780694|r 180 WGKDFELTGREVECLTWISE--G-KTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 180 ~~~~~~LT~RE~eVl~lia~--G-~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
T Consensus 161 ~~~~~~~s~~~~~vL~~L~~~~Ge~~v~~iA~~lg~s~~T~~~~~~~Lek~ 211 (231)
T TIGR01884 161 VPLLAGLSREELKVLEALKAEKGEKSVKNIAKKLGKSLSTISRHLAELEKK 211 (231)
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCEECHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 244678889999999998507880528779988578887999999988744