HHsearch alignment for GI: 254780694 and conserved domain: TIGR02997

>TIGR02997 Sig70-cyanoRpoD RNA polymerase sigma factor, cyanobacterial RpoD-like family.

Probab=95.68  E-value=0.021  Score=34.36  Aligned_cols=44  Identities=39%  Similarity=0.407  Sum_probs=40.1

Q ss_pred             CCCHHHHHHHHH---H--HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             889779999999---9--8599979999994999889999999999980
Q gi|254780694|r  185 ELTGREVECLTW---I--SEGKTSDEIAVILGISRNTVNNYIASIMRKT  228 (246)
Q Consensus       185 ~LT~RE~eVl~l---i--a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KL  228 (246)
T Consensus       287 ~L~p~e~~VL~LRfGL~~~~~~TL~eiG~~l~lSRERVRQiE~~AL~kL  335 (336)
T TIGR02997       287 ELTPRERQVLRLRFGLDDGEPLTLAEIGERLNLSRERVRQIEAKALRKL  335 (336)
T ss_pred             HCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf             3798899999985789989753278999883883688889999997534