HHsearch alignment for GI: 254780694 and conserved domain: pfam00126

>pfam00126 HTH_1 Bacterial regulatory helix-turn-helix protein, lysR family.
Probab=90.43  E-value=0.87  Score=23.91  Aligned_cols=43  Identities=19%  Similarity=0.257  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Q ss_conf             7999999998599979999994999889999999999980799
Q gi|254780694|r  189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK  231 (246)
Q Consensus       189 RE~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~  231 (246)
T Consensus         2 ~~l~~f~~v~~~gs~~~AA~~l~isqs~vs~~i~~LE~~lg~~   44 (60)
T pfam00126         2 RQLRVFVAVAEEGSFTAAAERLGLSQPAVSRQIKRLEEELGVP   44 (60)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCE
T ss_conf             7799999999809999999997989889999999999995997