HHsearch alignment for GI: 254780694 and conserved domain: pfam00126
>pfam00126 HTH_1 Bacterial regulatory helix-turn-helix protein, lysR family.
Probab=90.43 E-value=0.87 Score=23.91 Aligned_cols=43 Identities=19% Similarity=0.257 Sum_probs=39.5
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 7999999998599979999994999889999999999980799
Q gi|254780694|r 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 (246)
Q Consensus 189 RE~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~ 231 (246)
T Consensus 2 ~~l~~f~~v~~~gs~~~AA~~l~isqs~vs~~i~~LE~~lg~~ 44 (60)
T pfam00126 2 RQLRVFVAVAEEGSFTAAAERLGLSQPAVSRQIKRLEEELGVP 44 (60)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCE
T ss_conf 7799999999809999999997989889999999999995997