HHsearch alignment for GI: 254780694 and conserved domain: pfam01418

>pfam01418 HTH_6 Helix-turn-helix domain, rpiR family. This domain contains a helix-turn-helix motif. The best characterized member of this family is RpiR, a regulator of the expression of rpiB gene.

Probab=90.88  E-value=0.67  Score=24.66  Aligned_cols=49  Identities=24%  Similarity=0.203  Sum_probs=41.2

Q ss_pred             CCCCHHHHHHHHHHHCC------CCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf             88897799999999859------997999999499988999999999998079988999
Q gi|254780694|r  184 FELTGREVECLTWISEG------KTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA  236 (246)
Q Consensus       184 ~~LT~RE~eVl~lia~G------~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~ea  236 (246)
T Consensus        12 ~~lt~~e~~ia~yil~~~~~~~~~si~~lA~~~~vS~atv~----Rf~kklG~~Gf~ef   66 (106)
T pfam01418        12 SKLTKSEKKIADYILASPDNAIHLSIAELAKAAGVSEASVV----RFCRKLGFSGFSDL   66 (106)
T ss_pred             HHCCHHHHHHHHHHHHCHHHHHHCCHHHHHHHHCCCHHHHH----HHHHHHCCCCHHHH
T ss_conf             76499999999999929999988339999989699899999----99999589989999