HHsearch alignment for GI: 254780694 and conserved domain: pfam03965

>pfam03965 Pencillinase_R Penicillinase repressor. The penicillinase repressor negatively regulates expression of the penicillinase gene. The N-terminal region of this protein is involved in operator recognition, while the C-terminal is responsible for dimerization of the protein.
Probab=93.16  E-value=0.22  Score=27.70  Aligned_cols=45  Identities=20%  Similarity=0.303  Sum_probs=35.5

Q ss_pred             CCHHHHHHHH--HHHCCCCHHHHHHHH----CCCHHHHHHHHHHHHHHHCC
Q ss_conf             8977999999--998599979999994----99988999999999998079
Q gi|254780694|r  186 LTGREVECLT--WISEGKTSDEIAVIL----GISRNTVNNYIASIMRKTAT  230 (246)
Q Consensus       186 LT~RE~eVl~--lia~G~t~~eIA~~L----~iS~~TV~~hl~~i~~KLgv  230 (246)
T Consensus         1 Ls~~E~~IM~~lW~~~~~t~~ei~~~l~~~~~~~~tTv~T~L~rL~~KG~l   51 (115)
T pfam03965         1 IGDAEWEVMRILWALGPATVKEVVEELPEPRDWAYSTVKTLLTRLVKKGLL   51 (115)
T ss_pred             CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCE
T ss_conf             988999999999807997799999985145688572899999999977862