HHsearch alignment for GI: 254780694 and conserved domain: pfam03965
>pfam03965 Pencillinase_R Penicillinase repressor. The penicillinase repressor negatively regulates expression of the penicillinase gene. The N-terminal region of this protein is involved in operator recognition, while the C-terminal is responsible for dimerization of the protein.
Probab=93.16 E-value=0.22 Score=27.70 Aligned_cols=45 Identities=20% Similarity=0.303 Sum_probs=35.5
Q ss_pred CCHHHHHHHH--HHHCCCCHHHHHHHH----CCCHHHHHHHHHHHHHHHCC
Q ss_conf 8977999999--998599979999994----99988999999999998079
Q gi|254780694|r 186 LTGREVECLT--WISEGKTSDEIAVIL----GISRNTVNNYIASIMRKTAT 230 (246)
Q Consensus 186 LT~RE~eVl~--lia~G~t~~eIA~~L----~iS~~TV~~hl~~i~~KLgv 230 (246)
T Consensus 1 Ls~~E~~IM~~lW~~~~~t~~ei~~~l~~~~~~~~tTv~T~L~rL~~KG~l 51 (115)
T pfam03965 1 IGDAEWEVMRILWALGPATVKEVVEELPEPRDWAYSTVKTLLTRLVKKGLL 51 (115)
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCE
T ss_conf 988999999999807997799999985145688572899999999977862