HHsearch alignment for GI: 254780694 and conserved domain: pfam04967

>pfam04967 HTH_10 HTH DNA binding domain.
Probab=97.56  E-value=0.00024  Score=46.73  Aligned_cols=43  Identities=30%  Similarity=0.321  Sum_probs=40.2

Q ss_pred             CCHHHHHHHHHHH--------CCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             8977999999998--------599979999994999889999999999980
Q gi|254780694|r  186 LTGREVECLTWIS--------EGKTSDEIAVILGISRNTVNNYIASIMRKT  228 (246)
Q Consensus       186 LT~RE~eVl~lia--------~G~t~~eIA~~L~iS~~TV~~hl~~i~~KL  228 (246)
T Consensus         1 LT~rQ~evl~~A~~~GYfd~PR~~~l~elA~~lgis~sT~~~hLr~ae~ki   51 (53)
T pfam04967         1 LTDRQREILRLAYKMGYFDYPRRVTLKDLAKELGISKSTLSEHLRRAESKL   51 (53)
T ss_pred             CCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             988999999999986897788768899999996989999999999999987