HHsearch alignment for GI: 254780694 and conserved domain: pfam04967
>pfam04967 HTH_10 HTH DNA binding domain.
Probab=97.56 E-value=0.00024 Score=46.73 Aligned_cols=43 Identities=30% Similarity=0.321 Sum_probs=40.2
Q ss_pred CCHHHHHHHHHHH--------CCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 8977999999998--------599979999994999889999999999980
Q gi|254780694|r 186 LTGREVECLTWIS--------EGKTSDEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 186 LT~RE~eVl~lia--------~G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
T Consensus 1 LT~rQ~evl~~A~~~GYfd~PR~~~l~elA~~lgis~sT~~~hLr~ae~ki 51 (53)
T pfam04967 1 LTDRQREILRLAYKMGYFDYPRRVTLKDLAKELGISKSTLSEHLRRAESKL 51 (53)
T ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 988999999999986897788768899999996989999999999999987