HHsearch alignment for GI: 254780694 and conserved domain: pfam08461

>pfam08461 HTH_12 Ribonuclease R winged-helix domain. This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaebacteria.
Probab=90.10  E-value=0.56  Score=25.14  Aligned_cols=33  Identities=24%  Similarity=0.234  Sum_probs=27.7

Q ss_pred             HHHHHHHCC---CCHHHHHHHH-----CCCHHHHHHHHHHH
Q ss_conf             999999859---9979999994-----99988999999999
Q gi|254780694|r  192 ECLTWISEG---KTSDEIAVIL-----GISRNTVNNYIASI  224 (246)
Q Consensus       192 eVl~lia~G---~t~~eIA~~L-----~iS~~TV~~hl~~i  224 (246)
T Consensus         2 eILriL~~~~~Pigak~ia~~L~~rG~~i~eRaVRYhL~~L   42 (66)
T pfam08461         2 EILRILAESDKPIGAKIIAEELNLRGYDIGERAVRYHLRIL   42 (66)
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             78999998599864999999999828584089999999999