HHsearch alignment for GI: 254780694 and conserved domain: pfam08461
>pfam08461 HTH_12 Ribonuclease R winged-helix domain. This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaebacteria.
Probab=90.10 E-value=0.56 Score=25.14 Aligned_cols=33 Identities=24% Similarity=0.234 Sum_probs=27.7
Q ss_pred HHHHHHHCC---CCHHHHHHHH-----CCCHHHHHHHHHHH
Q ss_conf 999999859---9979999994-----99988999999999
Q gi|254780694|r 192 ECLTWISEG---KTSDEIAVIL-----GISRNTVNNYIASI 224 (246)
Q Consensus 192 eVl~lia~G---~t~~eIA~~L-----~iS~~TV~~hl~~i 224 (246)
T Consensus 2 eILriL~~~~~Pigak~ia~~L~~rG~~i~eRaVRYhL~~L 42 (66)
T pfam08461 2 EILRILAESDKPIGAKIIAEELNLRGYDIGERAVRYHLRIL 42 (66)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 78999998599864999999999828584089999999999