HHsearch results for GI: 254780694 and protein with PDBid: 1ku3_A
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H
Probab=97.33 E-value=0.00044 Score=43.70 Aligned_cols=54 Identities=20% Similarity=0.306 Sum_probs=46.1
Q ss_pred CCCCCHHHHHHHHHH-----HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC-CCHHHH
Q ss_conf 888897799999999-----859997999999499988999999999998079-988999
Q gi|254780694|r 183 DFELTGREVECLTWI-----SEGKTSDEIAVILGISRNTVNNYIASIMRKTAT-KTRSGA 236 (246)
Q Consensus 183 ~~~LT~RE~eVl~li-----a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv-~~R~ea 236 (246)
...|++||++|+.+- .+.+|.+|||..|+||...|+...+++++||-- .++.+.
T Consensus 8 l~~L~~rEr~Ii~~ryGl~~~~~~tl~eIa~~lgiS~erVrqi~~~al~kLr~~~~~~~~ 67 (73)
T 1ku3_A 8 LSKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKYHESRTRK 67 (73)
T ss_dssp TTTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 872999999999998189999987899999998969999999999999999885877899