HHsearch results for GI: 254780694 and protein with PDBid: 1ku3_A

>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H
Probab=97.33  E-value=0.00044  Score=43.70  Aligned_cols=54  Identities=20%  Similarity=0.306  Sum_probs=46.1

Q ss_pred             CCCCCHHHHHHHHHH-----HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC-CCHHHH
Q ss_conf             888897799999999-----859997999999499988999999999998079-988999
Q gi|254780694|r  183 DFELTGREVECLTWI-----SEGKTSDEIAVILGISRNTVNNYIASIMRKTAT-KTRSGA  236 (246)
Q Consensus       183 ~~~LT~RE~eVl~li-----a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv-~~R~ea  236 (246)
                      ...|++||++|+.+-     .+.+|.+|||..|+||...|+...+++++||-- .++.+.
T Consensus         8 l~~L~~rEr~Ii~~ryGl~~~~~~tl~eIa~~lgiS~erVrqi~~~al~kLr~~~~~~~~   67 (73)
T 1ku3_A            8 LSKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKYHESRTRK   67 (73)
T ss_dssp             TTTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTC----
T ss_pred             HHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             872999999999998189999987899999998969999999999999999885877899