HHsearch results for GI: 254780694 and protein with PDBid: 1rp3_A

>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A

Probab=97.70  E-value=7.4e-05  Score=48.65  Aligned_cols=45  Identities=27%  Similarity=0.270  Sum_probs=42.2

Q ss_pred             CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             88897799999999-8599979999994999889999999999980
Q gi|254780694|r  184 FELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKT  228 (246)
Q Consensus       184 ~~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KL  228 (246)
                      ..|++||++|+.+. .+|+|-+|||..|+||..+|+...++++.||
T Consensus       186 ~~L~~rer~Ii~~ry~~~~tl~eIA~~lgiS~~rVrqi~~~Al~kL  231 (239)
T 1rp3_A          186 SKLPEREKLVIQLIFYEELPAKEVAKILETSVSRVSQLKAKALERL  231 (239)
T ss_dssp             TTSCHHHHHHHHHHHTSCCCHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             3799999999999926999999999998959999999999999999