HHsearch results for GI: 254780694 and protein with PDBid: 1tty_A

>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2

Probab=96.95  E-value=0.0015  Score=40.18  Aligned_cols=54  Identities=22%  Similarity=0.291  Sum_probs=47.2

Q ss_pred             CCCCHHHHHHHHHH-----HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf             88897799999999-----8599979999994999889999999999980799889999
Q gi|254780694|r  184 FELTGREVECLTWI-----SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI  237 (246)
Q Consensus       184 ~~LT~RE~eVl~li-----a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav  237 (246)
                      ..|++||++|+.+-     .+.+|..|||..++||..-|+..-+++++||.-..+.+-.
T Consensus        17 ~~L~~rE~~Vi~~rfGL~~~~~~Tl~eI~~~lgiSreRVRQie~~Al~kLr~~~~~~~L   75 (87)
T 1tty_A           17 KTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKYL   75 (87)
T ss_dssp             TTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTTBSSHHH
T ss_pred             HCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf             64999999999998078899965799999895988999999999999998670788999