HHsearch results for GI: 254780694 and protein with PDBid: 1yio_A

>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.71  E-value=1.4e-16  Score=123.95  Aligned_cols=112  Identities=16%  Similarity=0.084  Sum_probs=82.0

Q ss_pred             HHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             43333214457147503373689999999717875469899999999999999754201467798888897799999999
Q gi|254780694|r  118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI  197 (246)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~RE~eVl~li  197 (246)
                      ........++.+|+.++.+.......+........     .......     ....     .......||+||.||++++
T Consensus        90 ~~~~al~~Ga~~yl~Kp~~~~el~~~i~~~l~~~~-----~~~~~~~-----~~~~-----~~~~~~~Lt~re~evl~ll  154 (208)
T 1yio_A           90 MTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLNA-----ERRQARE-----TQDQ-----LEQLFSSLTGREQQVLQLT  154 (208)
T ss_dssp             CCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHHHH-----HHHHHHH-----HHHH-----HHHHHHTSCHHHHHHHHHH
T ss_pred             HHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH-----HHHHHHH-----HHHH-----HCCCCCCCCHHHHHHHHHH
T ss_conf             99999977999895389999999999999997401-----3445555-----3321-----0011232246899999999


Q ss_pred             HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf             85999799999949998899999999999807998899999999758
Q gi|254780694|r  198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN  244 (246)
Q Consensus       198 a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~G  244 (246)
                      ++|+||+|||..|++|++||++|++|||+|||++||+|+|.+|.+..
T Consensus       155 ~~g~~~~eIa~~l~iS~~TV~~h~~~i~~KL~~~~~~elv~~~~~~~  201 (208)
T 1yio_A          155 IRGLMNKQIAGELGIAEVTVKVHRHNIMQKLNVRSLANLVHLVEKYE  201 (208)
T ss_dssp             TTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHC-
T ss_pred             HCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             81564999999728768999999999999809999999999999973