HHsearch results for GI: 254780694 and protein with PDBid: 1yio_A
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.71 E-value=1.4e-16 Score=123.95 Aligned_cols=112 Identities=16% Similarity=0.084 Sum_probs=82.0
Q ss_pred HHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 43333214457147503373689999999717875469899999999999999754201467798888897799999999
Q gi|254780694|r 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197 (246)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~RE~eVl~li 197 (246)
........++.+|+.++.+.......+........ ....... .... .......||+||.||++++
T Consensus 90 ~~~~al~~Ga~~yl~Kp~~~~el~~~i~~~l~~~~-----~~~~~~~-----~~~~-----~~~~~~~Lt~re~evl~ll 154 (208)
T 1yio_A 90 MTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLNA-----ERRQARE-----TQDQ-----LEQLFSSLTGREQQVLQLT 154 (208)
T ss_dssp CCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHHHH-----HHHHHHH-----HHHH-----HHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH-----HHHHHHH-----HHHH-----HCCCCCCCCHHHHHHHHHH
T ss_conf 99999977999895389999999999999997401-----3445555-----3321-----0011232246899999999
Q ss_pred HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf 85999799999949998899999999999807998899999999758
Q gi|254780694|r 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 (246)
Q Consensus 198 a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~G 244 (246)
++|+||+|||..|++|++||++|++|||+|||++||+|+|.+|.+..
T Consensus 155 ~~g~~~~eIa~~l~iS~~TV~~h~~~i~~KL~~~~~~elv~~~~~~~ 201 (208)
T 1yio_A 155 IRGLMNKQIAGELGIAEVTVKVHRHNIMQKLNVRSLANLVHLVEKYE 201 (208)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHC-
T ss_pred HCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 81564999999728768999999999999809999999999999973