HHsearch results for GI: 254780694 and protein with PDBid: 2q0o_A
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=99.98 E-value=2.8e-31 Score=218.28 Aligned_cols=211 Identities=16% Similarity=0.120 Sum_probs=158.3
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 37999973279999999999999871930230002666311123210006895899999996698451738999985232
Q gi|254780694|r 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC 110 (246)
Q Consensus 31 d~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 110 (246)
+++..+..+.+..++...+..+++.+||+.+.+...+. .+....+++|.+|...|...++...||++..+.....
T Consensus 9 ~li~~l~~a~~~~~l~~~l~~~~~~~Gf~~~~y~~~~~-----~~~~~~~~~p~~w~~~Y~~~~y~~~DP~~~~~~~~~~ 83 (236)
T 2q0o_A 9 SLIDMLEAAQDGHMIKIALRSFAHSCGYDRFAYLQKDG-----TQVRTFHSYPGPWESIYLGSDYFNIDPVLAEAKRRRD 83 (236)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHHHTCCEEEEEEEET-----TEEEEEECSCHHHHHHHHHTTGGGTCHHHHHHHHCCS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEECCC-----CCEEEEECCCHHHHHHHHHCCCCCCCHHHHHHHCCCC
T ss_conf 99999984899999999999999981998799983388-----7657871799999999998899207999999974899
Q ss_pred HHHCCCHH-------------HHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCH----HHHHHHHHHHHHHHHHH
Q ss_conf 44303254-------------33332144571475033736899999997178754698----99999999999999754
Q gi|254780694|r 111 PVFHTLPE-------------NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR----DRLWEIGLLAAYQANMF 173 (246)
Q Consensus 111 ~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 173 (246)
|..|.... .....++...|+..+...+.+..+.+............ .................
T Consensus 84 p~~w~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (236)
T 2q0o_A 84 VFFWTADAWPARGSSPLRRFRDEAISHGIRCGVTIPVEGSYGSAMMLTFASPERKVDISGVLDPKKAVQLLMMVHYQLKI 163 (236)
T ss_dssp CEEEESTTSCCSSCCHHHHHHHHHHHTTCCEEEEEEEECGGGCEEEEEEEESSSCCCCTTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHCCCCCHHHHHHHHHHHHCCCEEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 97767213233577799999999997698014899982378877999961587631157789999999999999999998
Q ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
Q ss_conf 2014677988888977999999998599979999994999889999999999980799889999999975898
Q gi|254780694|r 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 (246)
Q Consensus 174 ~~~~~~~~~~~~LT~RE~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~Gli 246 (246)
........+...||+||+|||+|+++|+||+|||.+|+||++||++|++|||+|||++||+|||++|+++|||
T Consensus 164 ~~~~~~~~~~~~LT~RE~evL~l~a~G~t~~eIA~~L~iS~~TV~~h~~~i~~KLgv~nr~qava~A~~~GLI 236 (236)
T 2q0o_A 164 IAAKTVLNPKQMLSPREMLCLVWASKGKTASVTANLTGINARTVQHYLDKARAKLDAESVPQLVAIAKDRGLV 236 (236)
T ss_dssp HHHTCCCCGGGSCCHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHTTCC
T ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf 7333458973439987999999986699999999996999999999999999986899999999999986899