Query gi|254780694|ref|YP_003065107.1| probable transcriptional regulator protein, LuxR family [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 246
No_of_seqs 114 out of 7661
Neff 9.8
Searched_HMMs 23785
Date Tue May 31 19:08:54 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780694.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2q0o_A Probable transcriptiona 100.0 2.8E-31 1.2E-35 218.3 16.6 211 31-246 9-236 (236)
2 1l3l_A Transcriptional activat 100.0 1.7E-30 7E-35 213.3 15.3 211 31-246 6-234 (234)
3 3c3w_A Two component transcrip 99.9 8.3E-22 3.5E-26 157.5 10.8 120 120-246 91-210 (225)
4 3klo_A Transcriptional regulat 99.9 2.3E-21 9.8E-26 154.6 11.2 122 120-246 99-221 (225)
5 1a04_A Nitrate/nitrite respons 99.8 1.1E-20 4.5E-25 150.3 12.3 210 6-245 4-214 (215)
6 1fse_A GERE; helix-turn-helix 99.8 4.2E-19 1.8E-23 140.1 9.3 65 182-246 8-72 (74)
7 3clo_A Transcriptional regulat 99.8 4.4E-19 1.8E-23 140.0 9.4 63 184-246 196-258 (258)
8 2krf_A Transcriptional regulat 99.8 2.2E-18 9.3E-23 135.5 9.5 65 182-246 9-73 (73)
9 2rnj_A Response regulator prot 99.8 1.3E-18 5.5E-23 136.9 7.6 65 182-246 26-90 (91)
10 1je8_A Nitrate/nitrite respons 99.8 2.6E-18 1.1E-22 135.0 9.0 63 183-245 19-81 (82)
11 1p4w_A RCSB; solution structur 99.8 4.8E-18 2E-22 133.3 10.3 66 181-246 30-95 (99)
12 3c57_A Two component transcrip 99.8 6.2E-19 2.6E-23 139.0 5.7 67 180-246 22-88 (95)
13 1x3u_A Transcriptional regulat 99.7 5.2E-18 2.2E-22 133.1 8.0 62 185-246 16-77 (79)
14 1yio_A Response regulatory pro 99.7 1.4E-16 5.8E-21 124.0 12.4 112 118-244 90-201 (208)
15 2jpc_A SSRB; DNA binding prote 99.7 7.8E-17 3.3E-21 125.5 8.0 58 189-246 2-59 (61)
16 3ix3_A Transcriptional activat 98.8 4E-09 1.7E-13 76.0 4.7 146 31-176 5-165 (173)
17 2avx_A Regulatory protein SDIA 98.8 3.4E-09 1.4E-13 76.5 3.8 147 30-176 11-168 (171)
18 1xsv_A Hypothetical UPF0122 pr 98.2 3.2E-06 1.3E-10 57.4 6.7 44 186-229 26-70 (113)
19 2o8x_A Probable RNA polymerase 98.0 8.5E-06 3.6E-10 54.7 6.5 49 183-231 13-62 (70)
20 1s7o_A Hypothetical UPF0122 pr 98.0 1.2E-05 5E-10 53.8 6.7 44 186-229 23-67 (113)
21 3hug_A RNA polymerase sigma fa 98.0 1.3E-05 5.6E-10 53.4 6.5 44 185-228 37-81 (92)
22 3mzy_A RNA polymerase sigma-H 97.9 2E-05 8.5E-10 52.3 6.4 44 186-229 110-153 (164)
23 1or7_A Sigma-24, RNA polymeras 97.7 5.5E-05 2.3E-09 49.5 6.3 44 185-228 140-184 (194)
24 1rp3_A RNA polymerase sigma fa 97.7 7.4E-05 3.1E-09 48.7 6.4 45 184-228 186-231 (239)
25 2q1z_A RPOE, ECF SIGE; ECF sig 97.6 1.4E-05 6E-10 53.2 1.9 44 185-228 135-179 (184)
26 1p2f_A Response regulator; DRR 97.5 0.00016 6.6E-09 46.5 5.3 108 118-232 85-199 (220)
27 1ku3_A Sigma factor SIGA; heli 97.3 0.00044 1.8E-08 43.7 6.4 54 183-236 8-67 (73)
28 2gwr_A DNA-binding response re 97.3 0.00051 2.2E-08 43.3 6.4 109 119-231 91-208 (238)
29 1jhf_A LEXA repressor; LEXA SO 97.3 0.00046 1.9E-08 43.5 5.9 45 185-230 3-55 (202)
30 2oqr_A Sensory transduction pr 97.2 0.00013 5.5E-09 47.1 2.6 112 120-231 91-211 (230)
31 1ys7_A Transcriptional regulat 97.2 0.00039 1.6E-08 44.0 4.7 109 119-232 94-215 (233)
32 2p7v_B Sigma-70, RNA polymeras 97.2 0.00081 3.4E-08 42.0 6.3 51 184-234 4-59 (68)
33 1l0o_C Sigma factor; bergerat 97.2 4.7E-05 2E-09 49.9 0.0 45 184-228 197-242 (243)
34 1kgs_A DRRD, DNA binding respo 97.1 0.00055 2.3E-08 43.1 4.7 111 119-233 89-208 (225)
35 1tty_A Sigma-A, RNA polymerase 97.0 0.0015 6.5E-08 40.2 6.1 54 184-237 17-75 (87)
36 3k2z_A LEXA repressor; winged 96.8 0.002 8.5E-08 39.4 5.9 45 185-230 2-53 (196)
37 1u78_A TC3 transposase, transp 96.8 0.0026 1.1E-07 38.7 6.4 40 184-223 5-45 (141)
38 1l9z_H Sigma factor SIGA; heli 96.8 0.002 8.3E-08 39.5 5.6 53 185-237 375-433 (438)
39 2a6h_F RNA polymerase sigma fa 96.5 0.0018 7.7E-08 39.7 3.9 45 185-229 360-409 (423)
40 1tlh_B Sigma-70, RNA polymeras 96.4 0.0028 1.2E-07 38.5 4.3 51 183-233 16-71 (81)
41 3frw_A Putative Trp repressor 96.4 0.0045 1.9E-07 37.2 5.3 44 186-231 37-87 (107)
42 2d1h_A ST1889, 109AA long hypo 96.4 0.0043 1.8E-07 37.3 5.0 45 183-227 16-63 (109)
43 1jko_C HIN recombinase, DNA-in 96.3 0.0044 1.8E-07 37.3 4.5 40 182-221 2-42 (52)
44 3kor_A Possible Trp repressor; 96.2 0.0058 2.4E-07 36.5 5.0 37 186-223 54-97 (119)
45 2r0q_C Putative transposon TN5 96.1 0.0047 2E-07 37.0 4.2 38 191-232 166-203 (209)
46 2p5v_A Transcriptional regulat 96.1 0.014 5.8E-07 34.1 6.3 47 181-227 3-51 (162)
47 2wte_A CSA3; antiviral protein 96.0 0.016 6.6E-07 33.7 6.2 47 184-231 148-196 (244)
48 1y0u_A Arsenical resistance op 95.9 0.018 7.5E-07 33.4 6.4 40 187-226 30-69 (96)
49 1uly_A Hypothetical protein PH 95.9 0.014 6E-07 34.0 5.8 33 191-223 23-56 (192)
50 1gdt_A GD resolvase, protein ( 95.9 0.049 2.1E-06 30.6 8.5 43 179-223 139-181 (183)
51 1okr_A MECI, methicillin resis 95.8 0.02 8.4E-07 33.0 6.1 50 181-230 3-58 (123)
52 1j5y_A Transcriptional regulat 95.7 0.014 5.7E-07 34.1 4.9 43 187-230 20-65 (187)
53 2g9w_A Conserved hypothetical 95.6 0.017 7.2E-07 33.5 5.2 47 182-228 3-56 (138)
54 2cg4_A Regulatory protein ASNC 95.6 0.031 1.3E-06 31.9 6.5 45 183-227 3-49 (152)
55 3iyd_F RNA polymerase sigma fa 95.5 0.0027 1.2E-07 38.6 1.0 52 184-235 549-605 (613)
56 2hqr_A Putative transcriptiona 95.4 0.007 2.9E-07 36.0 2.6 107 118-231 82-198 (223)
57 1sfx_A Conserved hypothetical 95.4 0.033 1.4E-06 31.6 6.0 45 183-227 15-61 (109)
58 2ia0_A Putative HTH-type trans 95.3 0.038 1.6E-06 31.2 6.3 46 182-227 11-58 (171)
59 1jhg_A Trp operon repressor; c 95.3 0.022 9.5E-07 32.7 5.0 36 185-220 35-78 (101)
60 2e1c_A Putative HTH-type trans 95.3 0.035 1.5E-06 31.5 6.0 44 184-227 23-68 (171)
61 2dbb_A Putative HTH-type trans 95.2 0.044 1.9E-06 30.8 6.3 44 184-227 5-50 (151)
62 2pn6_A ST1022, 150AA long hypo 95.2 0.038 1.6E-06 31.2 5.9 41 187-227 2-44 (150)
63 2jzy_A Transcriptional regulat 94.9 0.036 1.5E-06 31.4 5.2 52 181-232 24-84 (112)
64 1gxq_A PHOB, phosphate regulon 94.9 0.039 1.7E-06 31.1 5.3 53 181-233 27-88 (106)
65 2oqg_A Possible transcriptiona 94.9 0.043 1.8E-06 30.9 5.5 40 187-226 20-60 (114)
66 1i1g_A Transcriptional regulat 94.9 0.052 2.2E-06 30.4 5.9 42 186-227 2-45 (141)
67 2rdp_A Putative transcriptiona 94.9 0.14 5.9E-06 27.6 8.0 46 182-227 36-83 (150)
68 2hwv_A DNA-binding response re 94.8 0.065 2.8E-06 29.7 6.2 49 183-231 41-98 (121)
69 1vz0_A PARB, chromosome partit 94.8 0.17 6.9E-06 27.2 8.1 38 185-222 117-156 (230)
70 2cyy_A Putative HTH-type trans 94.6 0.091 3.8E-06 28.8 6.6 44 184-227 3-48 (151)
71 2pmu_A Response regulator PHOP 94.6 0.047 2E-06 30.6 5.0 52 181-232 30-90 (110)
72 2k4j_A Putative transcriptiona 94.5 0.045 1.9E-06 30.8 4.8 50 182-231 38-96 (115)
73 1k78_A Paired box protein PAX5 94.5 0.085 3.6E-06 29.0 6.1 34 193-226 41-74 (149)
74 2cfx_A HTH-type transcriptiona 94.4 0.088 3.7E-06 28.9 6.1 43 185-227 2-46 (144)
75 1r1t_A Transcriptional repress 94.4 0.072 3E-06 29.5 5.7 39 188-226 46-85 (122)
76 1r71_A Transcriptional repress 94.4 0.1 4.3E-06 28.5 6.3 39 184-222 34-74 (178)
77 2w25_A Probable transcriptiona 94.3 0.097 4.1E-06 28.6 6.1 45 185-230 4-50 (150)
78 2vn2_A DNAD, chromosome replic 94.3 0.043 1.8E-06 30.9 4.3 46 182-227 26-78 (128)
79 2x4h_A Hypothetical protein SS 94.2 0.089 3.7E-06 28.9 5.8 46 182-227 7-58 (139)
80 2v79_A DNA replication protein 94.2 0.036 1.5E-06 31.4 3.7 44 184-227 28-78 (135)
81 2elh_A CG11849-PA, LD40883P; s 94.2 0.062 2.6E-06 29.9 4.9 43 184-226 21-64 (87)
82 3cuo_A Uncharacterized HTH-typ 94.2 0.079 3.3E-06 29.2 5.4 39 188-226 24-64 (99)
83 1ku9_A Hypothetical protein MJ 94.2 0.084 3.5E-06 29.0 5.6 45 183-227 21-68 (152)
84 3deu_A Transcriptional regulat 94.2 0.11 4.6E-06 28.3 6.2 46 182-227 47-95 (166)
85 3i4p_A Transcriptional regulat 94.1 0.1 4.4E-06 28.5 6.0 40 188-227 3-44 (162)
86 1r1u_A CZRA, repressor protein 94.1 0.095 4E-06 28.7 5.8 39 188-226 26-65 (106)
87 3f6o_A Probable transcriptiona 94.1 0.046 1.9E-06 30.7 4.0 39 188-226 18-57 (118)
88 3oop_A LIN2960 protein; protei 94.0 0.15 6.4E-06 27.4 6.6 46 182-227 31-78 (143)
89 2o3f_A Putative HTH-type trans 94.0 0.16 6.9E-06 27.2 6.7 51 183-237 16-72 (111)
90 2fbh_A Transcriptional regulat 93.9 0.11 4.6E-06 28.3 5.7 46 182-227 31-79 (146)
91 2z9m_A Response regulator YYCF 93.9 0.09 3.8E-06 28.9 5.3 51 181-231 32-91 (120)
92 3jth_A Transcription activator 93.9 0.062 2.6E-06 29.9 4.4 40 187-226 22-62 (98)
93 3nrv_A Putative transcriptiona 93.9 0.25 1.1E-05 26.0 7.5 51 177-227 29-81 (148)
94 2hr3_A Probable transcriptiona 93.9 0.13 5.7E-06 27.7 6.1 46 182-227 29-77 (147)
95 1b9m_A Protein (mode); DNA-bin 93.7 0.12 5.1E-06 28.0 5.6 44 188-231 22-65 (265)
96 2nyx_A Probable transcriptiona 93.7 0.12 4.9E-06 28.1 5.5 44 184-227 41-86 (168)
97 3b73_A PHIH1 repressor-like pr 93.6 0.077 3.2E-06 29.3 4.5 42 186-227 11-56 (111)
98 1bia_A BIRA bifunctional prote 93.6 0.13 5.7E-06 27.7 5.7 19 41-60 32-50 (321)
99 1opc_A OMPR, OMPRC; transcript 93.5 0.073 3.1E-06 29.4 4.3 52 181-232 27-87 (110)
100 2pex_A Transcriptional regulat 93.5 0.18 7.4E-06 27.0 6.2 46 182-227 41-88 (153)
101 3f6v_A Possible transcriptiona 93.5 0.048 2E-06 30.6 3.3 40 187-226 57-97 (151)
102 2k27_A Paired box protein PAX- 93.5 0.054 2.3E-06 30.3 3.5 35 192-226 33-67 (159)
103 1pdn_C Protein (PRD paired); p 93.4 0.16 6.9E-06 27.2 6.0 44 186-229 18-62 (128)
104 2fxa_A Protease production reg 93.4 0.22 9.1E-06 26.4 6.6 47 181-227 41-89 (207)
105 1s3j_A YUSO protein; structura 93.3 0.11 4.4E-06 28.4 4.8 45 183-227 32-78 (155)
106 2jsc_A Transcriptional regulat 93.3 0.091 3.8E-06 28.8 4.5 39 188-226 21-60 (118)
107 2nnn_A Probable transcriptiona 93.2 0.32 1.3E-05 25.3 7.2 44 184-227 34-79 (140)
108 2fbk_A Transcriptional regulat 93.2 0.049 2.1E-06 30.5 3.0 45 183-227 64-113 (181)
109 3bpv_A Transcriptional regulat 93.0 0.25 1.1E-05 25.9 6.4 46 182-227 23-70 (138)
110 1qbj_A Protein (double-strande 92.9 0.18 7.4E-06 27.0 5.5 45 187-231 9-58 (81)
111 2x48_A CAG38821; archeal virus 92.9 0.11 4.7E-06 28.2 4.5 31 193-223 24-54 (55)
112 3mky_B Protein SOPB; partition 92.9 0.21 8.7E-06 26.5 5.8 41 182-222 20-64 (189)
113 2kko_A Possible transcriptiona 92.9 0.11 4.8E-06 28.2 4.4 35 191-225 28-63 (108)
114 1sd4_A Penicillinase repressor 92.8 0.12 4.9E-06 28.1 4.5 47 182-228 4-56 (126)
115 3hhg_A Transcriptional regulat 92.8 0.33 1.4E-05 25.3 6.7 22 183-204 275-296 (306)
116 1jgs_A Multiple antibiotic res 92.8 0.28 1.2E-05 25.7 6.3 45 183-227 29-75 (138)
117 3onq_A Regulator of polyketide 92.7 0.24 1E-05 26.1 6.0 43 190-232 199-241 (262)
118 2qww_A Transcriptional regulat 92.7 0.15 6.1E-06 27.5 4.8 45 183-227 36-82 (154)
119 1p6r_A Penicillinase repressor 92.7 0.18 7.7E-06 26.9 5.3 47 183-229 4-56 (82)
120 3fm5_A Transcriptional regulat 92.7 0.2 8.4E-06 26.6 5.5 45 183-227 34-81 (150)
121 2fa5_A Transcriptional regulat 92.7 0.22 9.2E-06 26.4 5.7 44 184-227 45-90 (162)
122 2eth_A Transcriptional regulat 92.5 0.23 9.5E-06 26.3 5.6 44 184-227 40-85 (154)
123 1ub9_A Hypothetical protein PH 92.5 0.14 6.1E-06 27.5 4.6 41 187-227 15-57 (100)
124 2gxg_A 146AA long hypothetical 92.5 0.28 1.2E-05 25.7 6.0 45 183-227 32-77 (146)
125 3nqo_A MARR-family transcripti 92.1 0.35 1.5E-05 25.1 6.1 43 185-227 38-84 (189)
126 3hot_A Transposable element ma 92.1 0.24 9.9E-06 26.2 5.2 16 182-197 276-291 (345)
127 2k4b_A Transcriptional regulat 92.1 0.073 3.1E-06 29.4 2.6 48 183-230 30-83 (99)
128 3bj6_A Transcriptional regulat 92.0 0.24 1E-05 26.1 5.2 44 184-227 36-81 (152)
129 3bdd_A Regulatory protein MARR 92.0 0.33 1.4E-05 25.2 5.9 45 183-227 26-72 (142)
130 3ech_A MEXR, multidrug resista 91.9 0.29 1.2E-05 25.6 5.5 45 183-227 32-78 (142)
131 3bro_A Transcriptional regulat 91.9 0.35 1.5E-05 25.1 5.9 46 182-227 28-77 (141)
132 3boq_A Transcriptional regulat 91.8 0.13 5.6E-06 27.7 3.7 45 183-227 42-89 (160)
133 2w48_A Sorbitol operon regulat 91.8 0.18 7.7E-06 26.9 4.4 33 210-246 265-300 (315)
134 2jn6_A Protein CGL2762, transp 91.7 0.2 8.3E-06 26.7 4.5 34 191-224 12-47 (97)
135 1u2w_A CADC repressor, cadmium 91.7 0.29 1.2E-05 25.6 5.3 40 187-226 41-82 (122)
136 3eco_A MEPR; mutlidrug efflux 91.7 0.29 1.2E-05 25.6 5.3 45 183-227 26-74 (139)
137 3f3x_A Transcriptional regulat 91.7 0.23 9.5E-06 26.3 4.8 45 183-227 32-77 (144)
138 3cdh_A Transcriptional regulat 91.6 0.25 1.1E-05 26.0 5.0 45 183-227 38-84 (155)
139 2frh_A SARA, staphylococcal ac 91.4 0.21 8.7E-06 26.5 4.4 46 182-227 31-80 (127)
140 2a61_A Transcriptional regulat 91.2 0.43 1.8E-05 24.5 5.8 46 182-227 27-74 (145)
141 3hef_A Gene 1 protein; bacteri 91.2 0.11 4.8E-06 28.2 2.9 44 180-223 10-55 (143)
142 2zkz_A Transcriptional repress 90.9 0.27 1.1E-05 25.8 4.6 37 188-224 27-65 (99)
143 3cjn_A Transcriptional regulat 90.8 0.34 1.4E-05 25.1 5.0 45 183-227 47-93 (162)
144 2hqn_A Putative transcriptiona 90.8 0.11 4.8E-06 28.2 2.5 50 181-230 25-83 (109)
145 3kp7_A Transcriptional regulat 90.6 0.3 1.3E-05 25.5 4.6 44 184-227 34-78 (151)
146 1zx4_A P1 PARB, plasmid partit 90.5 0.55 2.3E-05 23.8 5.8 37 187-223 9-47 (192)
147 3fxq_A LYSR type regulator of 90.5 0.47 2E-05 24.2 5.5 15 184-198 278-292 (305)
148 3g3z_A NMB1585, transcriptiona 90.4 0.48 2E-05 24.2 5.4 45 183-227 26-72 (145)
149 2qlz_A Transcription factor PF 90.2 0.085 3.6E-06 29.0 1.5 44 187-231 163-208 (232)
150 3k0l_A Repressor protein; heli 90.2 0.47 2E-05 24.3 5.2 45 183-227 41-87 (162)
151 1z91_A Organic hydroperoxide r 90.2 0.55 2.3E-05 23.8 5.6 46 182-227 34-81 (147)
152 2ijl_A AGR_C_4647P, molybdenum 90.1 0.53 2.2E-05 23.9 5.5 49 183-231 21-69 (135)
153 3lmm_A Uncharacterized protein 90.1 0.45 1.9E-05 24.4 5.1 43 185-227 427-471 (583)
154 3jw4_A Transcriptional regulat 89.9 0.28 1.2E-05 25.7 3.9 45 183-227 36-84 (148)
155 2fbi_A Probable transcriptiona 89.8 0.54 2.3E-05 23.9 5.3 45 183-227 31-77 (142)
156 1s8n_A Putative antiterminator 89.7 0.86 3.6E-05 22.6 8.2 188 8-234 14-205 (205)
157 2bv6_A MGRA, HTH-type transcri 89.5 0.25 1E-05 26.0 3.4 44 184-227 33-78 (142)
158 3bja_A Transcriptional regulat 89.5 0.38 1.6E-05 24.8 4.3 45 183-227 28-74 (139)
159 3iwf_A Transcription regulator 89.5 0.73 3.1E-05 23.0 5.8 49 184-236 13-67 (107)
160 3hsr_A HTH-type transcriptiona 89.5 0.29 1.2E-05 25.6 3.7 45 183-227 31-77 (140)
161 1p4x_A Staphylococcal accessor 89.2 0.75 3.1E-05 22.9 5.7 46 182-227 152-201 (250)
162 1qgp_A Protein (double strande 88.9 0.69 2.9E-05 23.2 5.3 44 188-231 14-62 (77)
163 3e6m_A MARR family transcripti 87.9 0.63 2.6E-05 23.4 4.5 44 184-227 49-94 (161)
164 1stz_A Heat-inducible transcri 87.1 0.65 2.8E-05 23.3 4.3 16 42-58 52-67 (338)
165 1rr7_A Middle operon regulator 87.0 0.81 3.4E-05 22.7 4.7 50 184-234 77-126 (129)
166 1uxc_A FRUR (1-57), fructose r 86.9 0.31 1.3E-05 25.4 2.5 45 201-245 1-47 (65)
167 2o0m_A Transcriptional regulat 86.4 0.11 4.6E-06 28.3 0.0 14 232-245 311-324 (345)
168 1qo0_D AMIR; binding protein, 86.1 0.83 3.5E-05 22.7 4.4 109 36-148 15-123 (196)
169 1ais_B TFB TFIIB, protein (tra 85.9 1.2 4.9E-05 21.7 5.0 36 195-230 160-195 (200)
170 2ia2_A Putative transcriptiona 84.9 0.7 2.9E-05 23.1 3.5 14 44-58 52-65 (265)
171 2o0y_A Transcriptional regulat 84.5 0.74 3.1E-05 23.0 3.5 13 186-198 232-245 (260)
172 2gqq_A Leucine-responsive regu 84.1 0.092 3.9E-06 28.8 -1.3 44 184-227 9-54 (163)
173 2esn_A Probable transcriptiona 83.7 1.8 7.7E-05 20.4 5.3 18 43-60 39-56 (310)
174 2g7u_A Transcriptional regulat 83.5 1.2 5E-05 21.7 4.2 26 185-212 228-255 (257)
175 3fzv_A Probable transcriptiona 83.5 1.7 7.3E-05 20.6 5.0 13 185-197 282-294 (306)
176 1hlv_A CENP-B, major centromer 83.2 1.3 5.7E-05 21.3 4.4 39 185-223 7-48 (131)
177 1tc3_C Protein (TC3 transposas 82.3 2.1 8.7E-05 20.1 5.5 43 182-224 2-45 (51)
178 1lj9_A Transcriptional regulat 82.0 2 8.5E-05 20.2 4.9 45 183-227 24-70 (144)
179 3bqy_A Putative TETR family tr 81.4 0.92 3.9E-05 22.4 3.0 12 196-207 166-177 (209)
180 2auw_A Hypothetical protein NE 81.1 1.1 4.7E-05 21.8 3.3 38 185-223 89-126 (170)
181 2vxz_A Pyrsv_GP04; viral prote 80.7 2.2 9.4E-05 19.9 4.8 34 189-222 12-46 (165)
182 2rn7_A IS629 ORFA; helix, all 80.3 1 4.3E-05 22.1 2.9 37 191-227 13-57 (108)
183 3e6c_C CPRK, cyclic nucleotide 80.1 2.2 9.4E-05 19.9 4.6 44 200-243 177-229 (250)
184 2vke_A Tetracycline repressor 79.8 1.1 4.8E-05 21.7 3.0 16 214-229 186-201 (207)
185 3bdn_A Lambda repressor; repre 79.7 1.8 7.4E-05 20.5 4.0 40 184-223 5-53 (236)
186 2zcx_A SCO7815, TETR-family tr 78.9 1.5 6.1E-05 21.1 3.3 10 191-200 210-219 (231)
187 1z05_A Transcriptional regulat 78.4 2.6 0.00011 19.5 4.5 16 184-201 316-331 (429)
188 2k9s_A Arabinose operon regula 78.1 2.8 0.00012 19.2 5.7 37 188-224 3-44 (107)
189 3o9x_A Uncharacterized HTH-typ 77.8 2.6 0.00011 19.4 4.4 38 185-223 70-107 (133)
190 2w7n_A TRFB transcriptional re 77.4 3 0.00012 19.1 6.7 45 185-229 18-63 (101)
191 3mlf_A Transcriptional regulat 77.4 2.1 9E-05 20.0 3.8 27 197-223 33-59 (111)
192 2b5a_A C.BCLI; helix-turn-heli 76.9 1.8 7.7E-05 20.5 3.4 45 196-244 19-63 (77)
193 3dew_A Transcriptional regulat 76.2 1.7 7.1E-05 20.7 3.0 12 191-202 187-198 (206)
194 2h9b_A HTH-type transcriptiona 76.1 0.44 1.8E-05 24.4 0.0 12 186-197 278-289 (312)
195 3iwz_A CAP-like, catabolite ac 76.1 2.7 0.00011 19.4 4.0 27 200-226 187-213 (230)
196 3c2b_A Transcriptional regulat 76.0 3.2 0.00014 18.9 5.0 13 217-229 194-206 (221)
197 1lmb_3 Protein (lambda repress 76.0 3.2 0.00014 18.9 4.6 55 186-244 7-70 (92)
198 2ibd_A Possible transcriptiona 75.9 1.9 8.1E-05 20.3 3.2 18 185-202 181-200 (204)
199 3gzi_A Transcriptional regulat 75.8 1.8 7.4E-05 20.5 3.0 10 193-202 201-210 (218)
200 2gmg_A Hypothetical protein PF 75.8 1.4 5.8E-05 21.3 2.5 44 186-229 10-57 (105)
201 1pb6_A Hypothetical transcript 75.7 2 8.3E-05 20.2 3.2 10 192-201 200-209 (212)
202 1j9i_A GPNU1 DBD;, terminase s 75.3 1.1 4.8E-05 21.8 2.0 22 202-223 4-25 (68)
203 3kcc_A Catabolite gene activat 75.2 2.9 0.00012 19.1 4.0 27 201-227 218-244 (260)
204 3kz3_A Repressor protein CI; f 75.0 3.4 0.00014 18.7 4.6 26 198-223 23-48 (80)
205 3bs3_A Putative DNA-binding pr 74.9 2.2 9.3E-05 19.9 3.4 29 196-224 19-47 (76)
206 2fjr_A Repressor protein CI; g 74.6 3.5 0.00015 18.6 5.1 42 198-244 17-59 (189)
207 2cfu_A SDSA1; SDS-hydrolase, l 74.6 0.79 3.3E-05 22.8 1.0 38 191-228 370-419 (658)
208 2fmy_A COOA, carbon monoxide o 74.5 3 0.00013 19.1 3.9 27 200-226 167-193 (220)
209 1fx7_A Iron-dependent represso 74.4 3.6 0.00015 18.6 6.1 11 44-54 40-50 (230)
210 3cwr_A Transcriptional regulat 74.4 2 8.5E-05 20.2 3.0 20 183-202 188-207 (208)
211 3f0c_A TETR-molecule A, transc 74.1 2.4 0.0001 19.7 3.4 12 192-203 194-205 (216)
212 1on2_A Transcriptional regulat 74.0 3.6 0.00015 18.5 6.3 21 203-223 25-45 (142)
213 1r8d_A Transcription activator 74.0 2.3 9.5E-05 19.8 3.2 29 185-213 40-72 (109)
214 3gp4_A Transcriptional regulat 73.7 2 8.3E-05 20.2 2.8 10 200-209 59-68 (142)
215 2fq4_A Transcriptional regulat 73.7 2.5 0.00011 19.6 3.4 10 192-201 180-189 (192)
216 2a6c_A Helix-turn-helix motif; 73.6 3.7 0.00016 18.5 4.6 46 197-245 28-73 (83)
217 3mcz_A O-methyltransferase; ad 73.5 2.7 0.00011 19.4 3.5 16 230-245 316-331 (352)
218 2kpj_A SOS-response transcript 73.4 2 8.3E-05 20.2 2.8 44 197-244 19-62 (94)
219 2ahq_A Sigma-54, RNA polymeras 73.4 2.5 0.00011 19.5 3.3 28 201-232 38-70 (76)
220 2of7_A Putative TETR-family tr 73.3 2.5 0.00011 19.6 3.3 18 186-203 213-230 (260)
221 3g7r_A Putative transcriptiona 73.1 2.6 0.00011 19.5 3.3 13 45-57 40-52 (221)
222 3omt_A Uncharacterized protein 73.1 2.2 9.2E-05 19.9 3.0 43 196-242 17-59 (73)
223 2l49_A C protein; P2 bacteriop 73.0 2.9 0.00012 19.2 3.6 27 197-223 14-40 (99)
224 2ict_A Antitoxin HIGA; helix-t 73.0 2.5 0.0001 19.6 3.2 45 196-244 17-61 (94)
225 2hku_A A putative transcriptio 72.9 3.8 0.00016 18.4 4.2 17 215-231 188-204 (215)
226 1utx_A CYLR2; DNA-binding prot 72.8 2.2 9.4E-05 19.9 3.0 44 197-244 11-54 (66)
227 2id3_A Putative transcriptiona 72.8 2.3 9.8E-05 19.8 3.0 21 41-61 41-61 (225)
228 3fmy_A HTH-type transcriptiona 72.7 2.2 9.1E-05 20.0 2.9 39 184-223 9-47 (73)
229 3hta_A EBRA repressor; TETR fa 72.7 2.3 9.8E-05 19.8 3.0 13 212-224 184-196 (217)
230 1z6r_A MLC protein; transcript 72.6 3.9 0.00016 18.3 6.0 10 192-201 299-308 (406)
231 3hh0_A Transcriptional regulat 72.6 2.5 0.0001 19.6 3.1 28 186-213 43-74 (146)
232 1q06_A Transcriptional regulat 72.6 2.9 0.00012 19.1 3.5 13 198-210 55-67 (135)
233 2ppx_A AGR_C_3184P, uncharacte 72.5 3 0.00012 19.1 3.5 33 190-223 34-66 (99)
234 2g7g_A RHA04620, putative tran 72.3 2.4 0.0001 19.7 3.0 31 194-226 171-201 (213)
235 3c07_A Putative TETR-family tr 72.3 2.8 0.00012 19.3 3.3 15 44-58 45-59 (273)
236 2h09_A Transcriptional regulat 72.2 3.5 0.00015 18.6 3.8 26 201-226 55-80 (155)
237 2oz6_A Virulence factor regula 72.2 3.7 0.00016 18.4 4.0 27 201-227 165-191 (207)
238 3la7_A Global nitrogen regulat 71.9 3.9 0.00016 18.3 4.0 28 200-227 193-220 (243)
239 1mgt_A MGMT, protein (O6-methy 71.9 4.1 0.00017 18.2 4.1 40 184-223 87-132 (174)
240 2d9s_A CBL E3 ubiquitin protei 71.8 2.6 0.00011 19.5 3.1 42 190-232 10-51 (53)
241 2vz4_A Tipal, HTH-type transcr 71.6 3.1 0.00013 19.0 3.4 34 185-218 39-76 (108)
242 3op9_A PLI0006 protein; struct 71.3 4.2 0.00018 18.1 4.8 27 197-223 19-45 (114)
243 3nnr_A Transcriptional regulat 71.0 2.7 0.00011 19.4 3.0 12 186-197 198-209 (228)
244 3bru_A Regulatory protein, TET 71.0 3.2 0.00013 18.9 3.4 20 41-60 31-50 (222)
245 1ft9_A Carbon monoxide oxidati 71.0 4.2 0.00018 18.1 4.0 30 200-230 163-192 (222)
246 2rae_A Transcriptional regulat 70.9 2.9 0.00012 19.1 3.2 11 192-202 188-198 (207)
247 2gau_A Transcriptional regulat 70.8 4.1 0.00017 18.2 3.9 26 201-226 181-206 (232)
248 1r69_A Repressor protein CI; g 70.7 2.5 0.0001 19.6 2.8 28 196-223 10-37 (69)
249 2r1j_L Repressor protein C2; p 70.6 4.3 0.00018 18.0 4.6 44 197-244 15-58 (68)
250 3bjb_A Probable transcriptiona 70.4 2.8 0.00012 19.2 3.0 14 191-204 192-205 (207)
251 3bni_A Putative TETR-family tr 70.4 3.3 0.00014 18.8 3.4 21 41-61 44-64 (229)
252 3cjd_A Transcriptional regulat 70.3 2.8 0.00012 19.3 3.0 11 191-201 186-196 (198)
253 2wiu_B HTH-type transcriptiona 69.9 4.5 0.00019 17.9 4.8 45 197-245 22-66 (88)
254 2wus_R RODZ, putative uncharac 69.7 2.6 0.00011 19.4 2.7 35 197-231 17-68 (112)
255 1c9b_A General transcription f 69.0 2.6 0.00011 19.4 2.6 34 196-229 155-188 (207)
256 2f07_A YVDT; helix-turn-helix, 69.0 3.6 0.00015 18.6 3.3 10 191-200 184-193 (197)
257 3e97_A Transcriptional regulat 68.8 4.7 0.0002 17.8 4.0 26 201-226 176-201 (231)
258 1zug_A Phage 434 CRO protein; 68.8 2.9 0.00012 19.2 2.8 28 196-223 12-39 (71)
259 1adr_A P22 C2 repressor; trans 68.7 3.3 0.00014 18.8 3.1 44 197-244 15-58 (76)
260 3f52_A CLP gene regulator (CLG 68.7 4.8 0.0002 17.8 4.3 44 197-244 38-81 (117)
261 2zdb_A Transcriptional regulat 68.6 4.4 0.00019 18.0 3.7 26 201-226 140-165 (195)
262 3fx3_A Cyclic nucleotide-bindi 68.4 3.3 0.00014 18.8 3.0 27 201-227 179-205 (237)
263 1vi0_A Transcriptional regulat 68.1 3.3 0.00014 18.8 3.0 24 185-208 177-200 (206)
264 2ooa_A E3 ubiquitin-protein li 68.0 1.7 7.2E-05 20.6 1.5 37 191-228 13-49 (52)
265 3clc_A Regulatory protein; pro 67.8 5 0.00021 17.7 4.4 44 197-244 21-64 (82)
266 3by6_A Predicted transcription 67.6 5 0.00021 17.6 5.2 10 197-206 102-111 (126)
267 1b0n_A Protein (SINR protein); 67.3 3.6 0.00015 18.6 3.0 26 197-222 11-36 (111)
268 2zb9_A Putative transcriptiona 67.2 3.7 0.00015 18.5 3.1 11 214-224 187-197 (214)
269 2gfn_A HTH-type transcriptiona 67.0 3.6 0.00015 18.6 3.0 12 215-226 187-198 (209)
270 2jvl_A TRMBF1; coactivator, he 67.0 3.8 0.00016 18.4 3.1 26 198-223 47-72 (107)
271 2eby_A Putative HTH-type trans 66.3 3.2 0.00014 18.9 2.6 26 197-222 21-46 (113)
272 3g1l_A Transcriptional regulat 66.1 3.9 0.00017 18.3 3.0 14 212-225 214-227 (256)
273 3fym_A Putative uncharacterize 66.1 4.1 0.00017 18.2 3.1 20 198-217 14-33 (130)
274 2ras_A Transcriptional regulat 65.9 2.3 9.6E-05 19.8 1.8 39 194-232 160-200 (212)
275 3cz5_A Two-component response 65.9 5.4 0.00023 17.4 4.6 135 4-161 2-136 (153)
276 1q1h_A TFE, transcription fact 65.6 5.5 0.00023 17.4 4.9 39 189-227 19-60 (110)
277 3kkc_A TETR family transcripti 65.5 2.4 0.0001 19.7 1.8 14 212-225 162-175 (177)
278 2jml_A DNA binding domain/tran 65.5 2.6 0.00011 19.5 2.0 20 202-221 7-26 (81)
279 2q24_A Putative TETR family tr 65.1 4 0.00017 18.2 2.9 13 45-57 20-32 (194)
280 2ao9_A Phage protein; structur 65.0 5.6 0.00024 17.3 3.8 38 184-221 22-69 (155)
281 3dcf_A Transcriptional regulat 64.8 5 0.00021 17.6 3.4 16 186-201 197-214 (218)
282 2ewt_A BLDD, putative DNA-bind 64.2 5.3 0.00022 17.5 3.4 44 197-244 18-63 (71)
283 2zcw_A TTHA1359, transcription 63.6 6 0.00025 17.1 5.2 44 200-244 146-199 (202)
284 1x57_A Endothelial differentia 63.4 5.4 0.00023 17.4 3.3 43 197-243 23-65 (91)
285 2oo9_A E3 ubiquitin-protein li 63.4 2 8.3E-05 20.2 1.1 40 189-229 4-43 (46)
286 2ef8_A C.ECOT38IS, putative tr 63.2 6 0.00025 17.1 3.5 27 197-223 20-46 (84)
287 2g7s_A Transcriptional regulat 62.0 5.3 0.00022 17.5 3.1 20 209-228 173-192 (194)
288 1y7y_A C.AHDI; helix-turn-heli 61.3 6.5 0.00028 16.9 5.4 44 197-244 23-66 (74)
289 3eus_A DNA-binding protein; st 61.1 6.6 0.00028 16.9 3.5 37 187-223 9-50 (86)
290 3dkw_A DNR protein; CRP-FNR, H 60.9 6.7 0.00028 16.8 4.0 26 201-226 179-204 (227)
291 3dv8_A Transcriptional regulat 60.9 6.7 0.00028 16.8 4.0 27 201-227 170-196 (220)
292 1g2h_A Transcriptional regulat 60.5 6.8 0.00029 16.8 3.9 37 185-222 17-55 (61)
293 3cec_A Putative antidote prote 60.3 5.7 0.00024 17.3 3.0 37 187-223 18-54 (104)
294 3d0s_A Transcriptional regulat 60.3 6.8 0.00029 16.8 4.0 27 200-226 177-203 (227)
295 3b7h_A Prophage LP1 protein 11 59.9 6.9 0.00029 16.7 4.6 45 197-244 17-61 (78)
296 3kxa_A NGO0477 protein, putati 59.9 6.9 0.00029 16.7 3.5 45 196-244 77-121 (141)
297 2qsj_A DNA-binding response re 59.3 5.7 0.00024 17.3 2.9 132 5-158 1-132 (154)
298 1qzz_A RDMB, aclacinomycin-10- 59.1 7.2 0.0003 16.6 4.9 15 231-245 317-331 (374)
299 3kkd_A Transcriptional regulat 58.0 2.2 9.2E-05 20.0 0.5 16 211-226 217-232 (237)
300 3k69_A Putative transcription 57.7 7.5 0.00032 16.5 4.5 11 199-209 136-146 (162)
301 1neq_A DNA-binding protein NER 57.5 4.5 0.00019 17.9 2.1 37 189-225 11-47 (74)
302 1tw3_A COMT, carminomycin 4-O- 57.5 7.6 0.00032 16.5 4.3 17 185-201 261-278 (360)
303 2qvg_A Two component response 57.5 6.6 0.00028 16.9 2.9 133 1-148 1-133 (143)
304 2cmp_A G1P, terminase small su 57.4 7.6 0.00032 16.5 3.6 49 182-230 5-54 (63)
305 1x19_A CRTF-related protein; m 57.0 7.7 0.00033 16.4 4.9 17 186-202 269-286 (359)
306 3eul_A Possible nitrate/nitrit 56.6 4.1 0.00017 18.2 1.7 131 6-159 14-144 (152)
307 3f6w_A XRE-family like protein 56.5 7.9 0.00033 16.4 5.1 44 197-244 24-67 (83)
308 3gwz_A MMCR; methyltransferase 55.6 3.9 0.00017 18.3 1.5 18 186-203 281-299 (369)
309 2juj_A E3 ubiquitin-protein li 55.4 2.3 9.8E-05 19.8 0.3 40 190-230 8-47 (56)
310 3ccy_A Putative TETR-family tr 54.5 2.7 0.00012 19.3 0.6 20 184-203 178-199 (203)
311 3k7a_M Transcription initiatio 53.9 2.2 9.2E-05 19.9 0.0 35 195-229 287-321 (345)
312 3i53_A O-methyltransferase; CO 53.5 8.8 0.00037 16.1 5.2 18 41-58 50-67 (332)
313 1x2n_A Homeobox protein pknox1 53.0 9 0.00038 16.0 5.4 45 184-228 12-65 (73)
314 1b72_B Protein (PBX1); homeodo 52.5 9.1 0.00038 16.0 5.9 46 184-229 6-60 (87)
315 3mn2_A Probable ARAC family tr 51.5 9.5 0.0004 15.9 3.9 35 191-228 57-94 (108)
316 1al3_A Cys regulon transcripti 51.2 2.6 0.00011 19.5 0.0 45 184-231 278-322 (324)
317 3neu_A LIN1836 protein; struct 51.0 9.6 0.00041 15.8 5.4 13 206-218 43-55 (125)
318 2k9l_A RNA polymerase sigma fa 51.0 9.6 0.00041 15.8 4.5 40 186-225 26-73 (76)
319 2r3s_A Uncharacterized protein 50.7 9.8 0.00041 15.8 3.4 15 231-245 301-315 (335)
320 3lst_A CALO1 methyltransferase 50.5 7.9 0.00033 16.4 2.4 18 41-58 67-84 (348)
321 3eup_A Transcriptional regulat 50.2 3.9 0.00016 18.3 0.8 15 216-230 187-201 (204)
322 3g5g_A Regulatory protein; tra 50.0 10 0.00042 15.7 4.8 44 197-244 38-81 (99)
323 1zyb_A Transcription regulator 49.7 10 0.00043 15.7 4.0 41 186-227 162-213 (232)
324 1bl0_A Protein (multiple antib 49.6 10 0.00043 15.7 4.8 35 191-228 66-101 (129)
325 1v4r_A Transcriptional repress 49.5 9.1 0.00038 16.0 2.6 20 202-221 37-56 (102)
326 1umq_A Photosynthetic apparatu 48.9 10 0.00044 15.6 5.1 39 185-223 37-77 (81)
327 3a02_A Homeobox protein arista 48.9 10 0.00044 15.6 3.9 45 185-229 5-55 (60)
328 3dp7_A SAM-dependent methyltra 48.8 10 0.00044 15.6 4.7 16 230-245 319-334 (363)
329 2qco_A CMER; transcriptional r 48.1 2.1 8.7E-05 20.1 -0.9 11 193-203 197-207 (210)
330 1r7j_A Conserved hypothetical 47.6 11 0.00046 15.5 5.0 37 191-227 11-47 (95)
331 2iu5_A DHAS, hypothetical prot 47.6 4 0.00017 18.3 0.5 16 194-209 158-173 (195)
332 2ip2_A Probable phenazine-spec 47.4 11 0.00046 15.5 4.9 16 186-201 246-262 (334)
333 2z99_A Putative uncharacterize 47.2 11 0.00046 15.4 4.5 13 42-54 44-56 (219)
334 1ig7_A Homeotic protein MSX-1; 47.1 11 0.00047 15.4 3.9 44 185-228 6-55 (58)
335 2da4_A Hypothetical protein DK 47.0 11 0.00047 15.4 7.5 47 182-228 11-67 (80)
336 1jgg_A Segmentation protein EV 46.1 11 0.00048 15.3 3.9 44 185-228 7-56 (60)
337 1i3j_A I-TEVI, intron-associat 44.8 12 0.00051 15.2 2.7 24 200-223 83-106 (116)
338 2o38_A Hypothetical protein; a 44.3 12 0.00051 15.1 4.6 45 198-245 51-95 (120)
339 3oou_A LIN2118 protein; protei 43.9 12 0.00052 15.1 5.8 27 198-227 68-94 (108)
340 3nau_A Zinc fingers and homeob 43.5 13 0.00053 15.1 4.0 43 186-228 11-59 (66)
341 1kyz_A COMT, caffeic acid 3-O- 43.3 13 0.00053 15.1 2.7 17 42-58 73-89 (365)
342 2dmq_A LIM/homeobox protein LH 43.1 13 0.00054 15.0 3.9 45 184-228 12-62 (80)
343 3him_A Probable transcriptiona 43.0 3.6 0.00015 18.5 -0.3 15 219-233 190-204 (211)
344 2ofy_A Putative XRE-family tra 42.4 13 0.00055 15.0 6.0 57 186-245 6-69 (86)
345 1o5l_A Transcriptional regulat 42.2 4.3 0.00018 18.1 0.0 27 200-226 164-190 (213)
346 1b8i_A Ultrabithorax, protein 42.0 13 0.00056 14.9 3.9 46 184-229 25-76 (81)
347 2d5v_A Hepatocyte nuclear fact 41.5 13 0.00057 14.9 3.6 49 183-231 101-155 (164)
348 1y9q_A Transcriptional regulat 41.5 13 0.00057 14.9 3.4 10 49-58 56-65 (192)
349 3b2n_A Uncharacterized protein 41.1 13 0.00055 15.0 2.3 123 6-151 2-124 (133)
350 2djn_A Homeobox protein DLX-5; 41.1 14 0.00058 14.8 3.4 46 184-229 12-63 (70)
351 2vi6_A Homeobox protein nanog; 40.9 14 0.00058 14.8 3.6 26 203-228 33-58 (62)
352 1wi3_A DNA-binding protein SAT 40.9 14 0.00058 14.8 6.0 47 183-229 11-64 (71)
353 1ojl_A Transcriptional regulat 40.8 14 0.00058 14.8 3.2 37 186-222 265-303 (304)
354 3bwg_A Uncharacterized HTH-typ 40.6 14 0.00059 14.8 3.8 12 203-214 186-197 (239)
355 2qc0_A Uncharacterized protein 40.3 14 0.00059 14.8 2.6 38 189-226 298-337 (373)
356 3mkl_A HTH-type transcriptiona 40.0 14 0.0006 14.7 3.3 24 192-215 62-86 (120)
357 2da2_A Alpha-fetoprotein enhan 39.9 14 0.0006 14.7 3.8 46 184-229 12-63 (70)
358 2kt0_A Nanog, homeobox protein 39.7 14 0.00061 14.7 3.6 46 184-229 27-78 (84)
359 3heb_A Response regulator rece 39.6 14 0.00061 14.7 5.0 126 8-145 5-130 (152)
360 3dn7_A Cyclic nucleotide bindi 39.3 5.1 0.00021 17.6 0.0 26 199-228 167-192 (194)
361 2dmu_A Homeobox protein goosec 39.2 15 0.00062 14.6 3.9 45 184-228 12-62 (70)
362 1du6_A PBX1, homeobox protein 39.1 15 0.00062 14.6 3.5 44 185-228 9-61 (64)
363 3k2a_A Homeobox protein MEIS2; 38.9 15 0.00062 14.6 5.8 44 185-228 4-56 (67)
364 1akh_A Protein (mating-type pr 38.5 15 0.00063 14.6 3.8 45 184-228 10-60 (61)
365 2dmt_A Homeobox protein BARH-l 38.3 15 0.00064 14.6 4.0 46 184-229 22-73 (80)
366 2dmn_A Homeobox protein TGIF2L 37.9 15 0.00064 14.5 6.4 46 183-228 11-65 (83)
367 1hw1_A FADR, fatty acid metabo 37.9 15 0.00064 14.5 3.9 17 188-204 191-207 (239)
368 1puf_B PRE-B-cell leukemia tra 37.8 15 0.00065 14.5 3.9 46 184-229 6-60 (73)
369 2fna_A Conserved hypothetical 37.6 16 0.00065 14.5 3.9 45 182-226 284-334 (357)
370 3lsg_A Two-component response 37.5 16 0.00065 14.5 5.8 33 192-227 59-92 (103)
371 2e1o_A Homeobox protein PRH; D 36.5 16 0.00068 14.4 3.9 45 184-228 12-62 (70)
372 3gbg_A TCP pilus virulence reg 36.5 16 0.00068 14.4 3.7 46 187-237 168-217 (276)
373 3a03_A T-cell leukemia homeobo 36.4 16 0.00068 14.4 3.9 25 204-228 28-52 (56)
374 1ftt_A TTF-1 HD, thyroid trans 36.1 16 0.00069 14.3 3.9 45 184-228 7-57 (68)
375 3eet_A Putative GNTR-family tr 36.1 16 0.00069 14.3 3.9 22 29-52 56-77 (272)
376 1le8_B Mating-type protein alp 35.5 17 0.0007 14.3 5.7 46 185-230 8-62 (83)
377 2ecc_A Homeobox and leucine zi 35.1 17 0.00071 14.2 3.9 44 185-228 9-58 (76)
378 3edp_A LIN2111 protein; APC883 35.1 17 0.00071 14.2 5.3 16 201-216 185-200 (236)
379 2h1k_A IPF-1, pancreatic and d 34.5 17 0.00073 14.2 3.9 44 185-228 9-58 (63)
380 1wh5_A ZF-HD homeobox family p 34.4 17 0.00073 14.2 6.1 45 182-226 20-74 (80)
381 2dms_A Homeobox protein OTX2; 34.3 17 0.00073 14.2 3.3 44 185-228 13-62 (80)
382 2cra_A Homeobox protein HOX-B1 33.7 18 0.00075 14.1 3.6 45 184-228 12-62 (70)
383 2hdd_A Protein (engrailed home 33.7 18 0.00075 14.1 3.9 44 185-228 9-58 (61)
384 3a01_A Homeodomain-containing 33.6 18 0.00075 14.1 3.3 45 184-228 22-72 (93)
385 1zq3_P PRD-4, homeotic bicoid 33.3 18 0.00076 14.1 3.9 45 184-228 7-57 (68)
386 2ecb_A Zinc fingers and homeob 33.2 18 0.00077 14.0 3.9 46 186-231 18-69 (89)
387 3lwf_A LIN1550 protein, putati 33.0 18 0.00077 14.0 4.0 36 184-219 20-63 (159)
388 2k40_A Homeobox expressed in E 33.0 18 0.00077 14.0 3.9 46 185-230 7-58 (67)
389 2wv0_A YVOA, HTH-type transcri 32.5 19 0.00079 14.0 3.9 13 203-215 191-203 (243)
390 2dn0_A Zinc fingers and homeob 32.0 19 0.0008 13.9 3.9 46 184-229 13-64 (76)
391 1uhs_A HOP, homeodomain only p 31.6 19 0.00081 13.9 6.5 46 183-228 5-57 (72)
392 3oio_A Transcriptional regulat 30.5 20 0.00085 13.8 5.5 39 191-232 62-101 (113)
393 1nr3_A MTH0916, DNA-binding pr 30.5 2.7 0.00011 19.4 -2.6 31 199-229 4-34 (122)
394 1ahd_P Antennapedia protein mu 30.2 20 0.00086 13.7 3.9 44 185-228 8-57 (68)
395 2cue_A Paired box protein PAX6 30.1 20 0.00086 13.7 3.9 46 184-229 12-63 (80)
396 1ocp_A OCT-3; DNA-binding prot 29.7 21 0.00087 13.7 2.7 45 184-228 13-63 (67)
397 3maj_A DNA processing chain A; 29.7 21 0.00087 13.7 3.6 41 184-224 324-365 (382)
398 1nk2_P Homeobox protein VND; h 29.7 21 0.00087 13.7 3.9 45 184-228 14-64 (77)
399 1b72_A Protein (homeobox prote 29.6 21 0.00088 13.7 3.9 25 204-228 65-89 (97)
400 1au7_A Protein PIT-1, GHF-1; c 29.2 21 0.00089 13.6 4.0 45 184-228 92-142 (146)
401 2da5_A Zinc fingers and homeob 29.2 21 0.00089 13.6 2.9 45 185-229 13-63 (75)
402 1u8b_A ADA polyprotein; protei 28.7 22 0.00091 13.6 3.5 25 200-228 93-117 (133)
403 3lte_A Response regulator; str 28.6 22 0.00091 13.5 5.9 125 1-150 1-125 (132)
404 1fjl_A Paired protein; DNA-bin 28.4 22 0.00092 13.5 3.9 45 184-228 23-73 (81)
405 3nar_A ZHX1, zinc fingers and 28.4 22 0.00092 13.5 4.0 25 204-228 56-80 (96)
406 2w57_A Ferric uptake regulatio 28.3 22 0.00092 13.5 5.7 48 182-230 11-67 (150)
407 1x2m_A LAG1 longevity assuranc 28.3 22 0.00092 13.5 3.9 24 204-227 32-55 (64)
408 1hkq_A REPA, replication prote 27.5 23 0.00095 13.4 5.9 44 185-228 18-75 (132)
409 2vt3_A REX, redox-sensing tran 27.2 23 0.00097 13.4 3.4 21 202-222 35-55 (215)
410 1mnm_C Protein (MAT alpha-2 tr 27.1 23 0.00097 13.4 6.1 51 177-227 25-84 (87)
411 2cqx_A LAG1 longevity assuranc 26.8 23 0.00098 13.3 3.8 24 204-227 40-63 (72)
412 2jxj_A Histone demethylase jar 26.4 21 0.00088 13.7 1.4 25 204-228 61-86 (96)
413 2hi3_A Homeodomain-only protei 26.3 24 0.001 13.3 3.9 25 204-228 34-58 (73)
414 2heo_A Z-DNA binding protein 1 26.2 24 0.001 13.3 4.3 45 187-231 9-56 (67)
415 2dmp_A Zinc fingers and homeob 26.1 24 0.001 13.3 3.9 24 204-227 44-67 (89)
416 3f8m_A GNTR-family protein tra 26.0 24 0.001 13.3 3.8 26 202-227 38-63 (248)
417 2da7_A Zinc finger homeobox pr 25.8 24 0.001 13.2 3.9 25 204-228 36-60 (71)
418 2r5y_A Homeotic protein sex co 25.6 25 0.001 13.2 3.9 25 204-228 59-83 (88)
419 2da3_A Alpha-fetoprotein enhan 25.4 25 0.001 13.2 3.9 25 204-228 48-72 (80)
420 3cnb_A DNA-binding response re 25.2 25 0.001 13.2 4.6 135 1-156 1-136 (143)
421 2da1_A Alpha-fetoprotein enhan 25.2 25 0.001 13.2 4.0 25 204-228 38-62 (70)
422 1xmk_A Double-stranded RNA-spe 24.8 25 0.0011 13.1 3.3 41 187-227 10-53 (79)
423 1rep_C REPE54, protein (replic 24.4 26 0.0011 13.1 5.4 46 184-229 29-90 (251)
424 1i3c_A Response regulator RCP1 24.3 26 0.0011 13.1 3.2 133 1-147 1-134 (149)
425 2guz_A Mitochondrial import in 24.2 26 0.0011 13.0 2.4 28 201-228 11-39 (71)
426 1y6u_A XIS, excisionase from t 24.1 26 0.0011 13.0 2.6 23 201-223 17-39 (70)
427 2e19_A Transcription factor 8; 23.9 26 0.0011 13.0 3.6 24 204-227 34-57 (64)
428 3eyi_A Z-DNA-binding protein 1 23.8 27 0.0011 13.0 3.0 48 180-227 1-52 (72)
429 2key_A Putative phage integras 23.4 27 0.0011 12.9 4.3 27 211-246 69-95 (112)
430 1sfu_A 34L protein; protein/Z- 23.1 27 0.0011 12.9 3.3 28 199-226 28-55 (75)
431 2ys8_A RAB-related GTP-binding 23.0 27 0.0012 12.9 3.6 47 181-230 7-53 (90)
432 2xsd_C POU domain, class 3, tr 22.9 28 0.0012 12.9 3.9 25 204-228 130-154 (164)
433 1c20_A DEAD ringer protein; DN 22.9 28 0.0012 12.9 2.3 25 204-228 77-103 (128)
434 2g7h_A Methylated-DNA--protein 21.9 29 0.0012 12.8 2.4 22 202-223 98-119 (167)
435 2hl7_A Cytochrome C-type bioge 21.8 29 0.0012 12.7 2.8 20 191-210 50-69 (84)
436 2wvf_A Hpnikr, putative nickel 21.6 29 0.0012 12.7 3.4 22 221-242 25-46 (148)
437 2bnm_A Epoxidase; oxidoreducta 21.4 30 0.0012 12.7 3.0 20 198-217 21-40 (198)
438 1dw9_A Cyanate lyase; cyanate 21.3 30 0.0012 12.7 6.0 53 189-245 15-67 (156)
439 3il3_A 3-oxoacyl-[acyl-carrier 21.3 26 0.0011 13.1 1.0 25 202-233 25-49 (323)
440 3gt7_A Sensor protein; structu 21.0 30 0.0013 12.6 5.8 124 1-147 1-124 (154)
441 1puf_A HOX-1.7, homeobox prote 20.9 30 0.0013 12.6 3.9 25 204-228 44-68 (77)
442 2ezk_A Transposase; DNA-bindin 20.8 30 0.0013 12.6 5.2 34 191-224 40-77 (99)
443 2ra5_A Putative transcriptiona 20.7 17 0.00071 14.2 0.0 23 202-224 42-64 (247)
444 2jya_A AGR_C_3324P, uncharacte 20.7 25 0.0011 13.1 0.9 19 227-245 55-73 (106)
445 1k61_A Mating-type protein alp 20.7 31 0.0013 12.6 5.9 46 182-227 1-55 (60)
446 2qen_A Walker-type ATPase; unk 20.4 31 0.0013 12.6 5.7 42 186-227 280-327 (350)
447 3ff5_A PEX14P, peroxisomal bio 20.4 31 0.0013 12.6 3.3 24 187-210 28-51 (54)
448 3ic7_A Putative transcriptiona 20.3 8.3 0.00035 16.2 -1.7 23 202-224 37-59 (126)
449 1bw5_A ISL-1HD, insulin gene e 20.3 31 0.0013 12.6 4.0 30 204-233 34-63 (66)
No 1
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=99.98 E-value=2.8e-31 Score=218.28 Aligned_cols=211 Identities=16% Similarity=0.120 Sum_probs=158.3
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 37999973279999999999999871930230002666311123210006895899999996698451738999985232
Q gi|254780694|r 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC 110 (246)
Q Consensus 31 d~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 110 (246)
+++..+..+.+..++...+..+++.+||+.+.+...+. .+....+++|.+|...|...++...||++..+.....
T Consensus 9 ~li~~l~~a~~~~~l~~~l~~~~~~~Gf~~~~y~~~~~-----~~~~~~~~~p~~w~~~Y~~~~y~~~DP~~~~~~~~~~ 83 (236)
T 2q0o_A 9 SLIDMLEAAQDGHMIKIALRSFAHSCGYDRFAYLQKDG-----TQVRTFHSYPGPWESIYLGSDYFNIDPVLAEAKRRRD 83 (236)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHHHTCCEEEEEEEET-----TEEEEEECSCHHHHHHHHHTTGGGTCHHHHHHHHCCS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEECCC-----CCEEEEECCCHHHHHHHHHCCCCCCCHHHHHHHCCCC
T ss_conf 99999984899999999999999981998799983388-----7657871799999999998899207999999974899
Q ss_pred HHHCCCHH-------------HHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCH----HHHHHHHHHHHHHHHHH
Q ss_conf 44303254-------------33332144571475033736899999997178754698----99999999999999754
Q gi|254780694|r 111 PVFHTLPE-------------NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR----DRLWEIGLLAAYQANMF 173 (246)
Q Consensus 111 ~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 173 (246)
|..|.... .....++...|+..+...+.+..+.+............ .................
T Consensus 84 p~~w~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (236)
T 2q0o_A 84 VFFWTADAWPARGSSPLRRFRDEAISHGIRCGVTIPVEGSYGSAMMLTFASPERKVDISGVLDPKKAVQLLMMVHYQLKI 163 (236)
T ss_dssp CEEEESTTSCCSSCCHHHHHHHHHHHTTCCEEEEEEEECGGGCEEEEEEEESSSCCCCTTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHCCCCCHHHHHHHHHHHHCCCEEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 97767213233577799999999997698014899982378877999961587631157789999999999999999998
Q ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
Q ss_conf 2014677988888977999999998599979999994999889999999999980799889999999975898
Q gi|254780694|r 174 KSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 (246)
Q Consensus 174 ~~~~~~~~~~~~LT~RE~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~Gli 246 (246)
........+...||+||+|||+|+++|+||+|||.+|+||++||++|++|||+|||++||+|||++|+++|||
T Consensus 164 ~~~~~~~~~~~~LT~RE~evL~l~a~G~t~~eIA~~L~iS~~TV~~h~~~i~~KLgv~nr~qava~A~~~GLI 236 (236)
T 2q0o_A 164 IAAKTVLNPKQMLSPREMLCLVWASKGKTASVTANLTGINARTVQHYLDKARAKLDAESVPQLVAIAKDRGLV 236 (236)
T ss_dssp HHHTCCCCGGGSCCHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHTTCC
T ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf 7333458973439987999999986699999999996999999999999999986899999999999986899
No 2
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=99.97 E-value=1.7e-30 Score=213.31 Aligned_cols=211 Identities=13% Similarity=0.102 Sum_probs=152.7
Q ss_pred HHHHHHHHCC-CHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 3799997327-999999999999987193023000266631112321000689589999999669845173899998523
Q gi|254780694|r 31 DLLARMIPLD-CTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELF 109 (246)
Q Consensus 31 d~~~~l~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 109 (246)
|.+..+.... +...+...+..+++.+||+.|.+..... .+....++++.+|...|...++...||++..+....
T Consensus 6 ~~l~~~~~~~~~~~~l~~~l~~~~~~~Gf~~~~~~~~~~-----~~~~~~~~~p~~w~~~Y~~~~~~~~DP~~~~~~~~~ 80 (234)
T 1l3l_A 6 DKLTDLAAIEGDECILKTGLADIADHFGFTGYAYLHIQH-----RHITAVTNYHRQWQSTYFDKKFEALDPVVKRARSRK 80 (234)
T ss_dssp HHHHHHTTCCSCHHHHHHHHHHHHHHTTCSEEEEEEEET-----TEEEEEECSCHHHHHHHHHTTGGGTCHHHHHHHHCC
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC-----CCEEEECCCCHHHHHHHHHCCCHHCCHHHHHHHCCC
T ss_conf 999998853286999999999999977998799983278-----765787189989999999779612098999997489
Q ss_pred HHHHCCCHH-------------HHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCC----HHHHHHHHHHHHHHHHH
Q ss_conf 244303254-------------3333214457147503373689999999717875469----89999999999999975
Q gi|254780694|r 110 CPVFHTLPE-------------NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIIL----RDRLWEIGLLAAYQANM 172 (246)
Q Consensus 110 ~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 172 (246)
.|+.|.... ......+...|+..+.....+..+.+........... ............+....
T Consensus 81 ~p~~w~~~~~~~~~~~~~~~~~~~a~~~g~~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (234)
T 1l3l_A 81 HIFTWSGEHERPTLSKDERAFYDHASDFGIRSGITIPIKTANGFMSMFTMASDKPVIDLDREIDAVAAAATIGQIHARIS 160 (234)
T ss_dssp SCEEEEHHHHTTTCCHHHHHHHHHHHTTTCSEEEEEEEECGGGCEEEEEEEESSSSCCCSSCCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEECHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98795050200336878999999999839751588885068885699974367650356899999999999999999998
Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
Q ss_conf 42014677988888977999999998599979999994999889999999999980799889999999975898
Q gi|254780694|r 173 FKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 (246)
Q Consensus 173 ~~~~~~~~~~~~~LT~RE~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~Gli 246 (246)
.............||+||+|||+|+++|+||+|||.+|+||++||++|++|||+|||++||+|||++|+++|||
T Consensus 161 ~~~~~~~~~~~~~LT~RE~evL~~~a~G~s~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nr~qav~~A~~~glI 234 (234)
T 1l3l_A 161 FLRTTPTAEDAAWLDPKEATYLRWIAVGKTMEEIADVEGVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRKLI 234 (234)
T ss_dssp HTTCCCSEECCCCCCHHHHHHHHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHTTCC
T ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf 62168988777789989999999997699999999996989999999999999986899999999999986999
No 3
>3c3w_A Two component transcriptional regulatory protein DEVR; response regulator, two-component regulatory system, DNA- binding protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.87 E-value=8.3e-22 Score=157.46 Aligned_cols=120 Identities=16% Similarity=0.116 Sum_probs=91.5
Q ss_pred HHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 33321445714750337368999999971787546989999999999999975420146779888889779999999985
Q gi|254780694|r 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199 (246)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~RE~eVl~lia~ 199 (246)
......++.+|..+..........+..+..+...........+..- . ........+...||+||+|||+++++
T Consensus 91 ~~al~~Ga~~~l~K~~~~~~l~~~i~~v~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~LT~RE~eVL~ll~~ 163 (225)
T 3c3w_A 91 LDAILAGASGYVVKDIKGMELARAVKDVGAGRSLLDNRAAAALMAK---L----RGAAEKQDPLSGLTDQERTLLGLLSE 163 (225)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHH---H----HHHHHHSCTTTTSCHHHHHHHHHHHT
T ss_pred HHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHH---H----HHCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 9999849887740677799999999999869976897899999988---6----40233367556799999999999993
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
Q ss_conf 99979999994999889999999999980799889999999975898
Q gi|254780694|r 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 (246)
Q Consensus 200 G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~Gli 246 (246)
|+||+|||++|+||++||++|++|||+|||++||+|||.+|.+.||+
T Consensus 164 G~snkeIA~~L~iS~~TVk~h~~~I~~KLgv~nr~eav~~A~~~gl~ 210 (225)
T 3c3w_A 164 GLTNKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQAAVFATELKRS 210 (225)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCCSSCHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf 89888999997887999999999999996899999999999982998
No 4
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.86 E-value=2.3e-21 Score=154.59 Aligned_cols=122 Identities=21% Similarity=0.142 Sum_probs=95.9
Q ss_pred HHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 33321445714750337368999999971787546989999999999999975420146779888889779999999985
Q gi|254780694|r 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199 (246)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~RE~eVl~lia~ 199 (246)
......++.||+.+.........++..+..+..+.++.....+... . ..............||+||+|||+++++
T Consensus 99 ~~~~~~Ga~g~l~K~~~~~~L~~ai~~v~~G~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~LT~RE~eVL~ll~~ 173 (225)
T 3klo_A 99 LLFKWNNLAGVFYIDDDMDTLIKGMSKILQDEMWLTRKLAQEYILH---Y--RAGNSVVTSQMYAKLTKREQQIIKLLGS 173 (225)
T ss_dssp HHTTSTTEEEEEETTCCHHHHHHHHHHHHTTCCBCCHHHHHHHHHH---H--HTTCCCCCCHHHHTSCHHHHHHHHHHTT
T ss_pred HHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---H--CCCCCCCCCCCHHHHCHHHHHHHHHHHC
T ss_conf 9999869959997799999999999998479753104788888765---3--1466533232134422256543035533
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC-CCC
Q ss_conf 99979999994999889999999999980799889999999975-898
Q gi|254780694|r 200 GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN-NIV 246 (246)
Q Consensus 200 G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~-Gli 246 (246)
|+||+|||+.|+||++||++|+++||+|||++||+||+.||.++ ||.
T Consensus 174 G~snkeIA~~L~iS~~TVk~h~~~i~~KLgv~nr~el~~~A~~~~g~~ 221 (225)
T 3klo_A 174 GASNIEIADKLFVSENTVKTHLHNVFKKINAKNRLQALIWAKNNIGIE 221 (225)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHHTTTSCCSSHHHHHHHHHHHCCC-
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
T ss_conf 997999999978899999999999999868999999999999907977
No 5
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.85 E-value=1.1e-20 Score=150.34 Aligned_cols=210 Identities=14% Similarity=0.075 Sum_probs=131.6
Q ss_pred HHEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEECCCCCHH
Q ss_conf 11000221445888876553023213799997327999999999999987193023000266631112321000689589
Q gi|254780694|r 6 QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85 (246)
Q Consensus 6 ~~~~~~l~r~d~~r~~~v~~l~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 85 (246)
+..+|++..+++.-...+.++....+....+..+.+..+....+.. ..++... .+..+.+..+.+
T Consensus 4 ep~rILIvdD~~~~~~~l~~~L~~~~~~~~v~~a~~~~~~l~~~~~----~~pdlvl-----------lD~~lp~~~G~~ 68 (215)
T 1a04_A 4 EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES----LDPDLIL-----------LDLNMPGMNGLE 68 (215)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHH----HCCSEEE-----------EETTSTTSCHHH
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH----CCCCEEE-----------EECCCCCCCCCC
T ss_conf 8878999929899999999999858992899997999999999974----6996899-----------968889989862
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 99999966984517389999852324430325433332144571475033736899999997178754698999999999
Q gi|254780694|r 86 LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLL 165 (246)
Q Consensus 86 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (246)
+............- ..................++.+|+.++.........+.....+....+......+..
T Consensus 69 ~~~~~~~~~~~~~i--------ivlt~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~- 139 (215)
T 1a04_A 69 TLDKLREKSLSGRI--------VVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVLAA- 139 (215)
T ss_dssp HHHHHHHSCCCSEE--------EEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHSCCCCCTTTHHHHHH-
T ss_pred CCCCCCCCCCCCCC--------CCCCCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH-
T ss_conf 32101124566554--------344367999999999984998986025999999999999984887568567678888-
Q ss_pred HHHHHHHHH-HCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf 999997542-0146779888889779999999985999799999949998899999999999807998899999999758
Q gi|254780694|r 166 AAYQANMFK-SYDVHWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 (246)
Q Consensus 166 ~~~~~~~~~-~~~~~~~~~~~LT~RE~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~G 244 (246)
... ...........||+||.||++++++|+||++||+.|+||++||++|+++||+|||++||+|++.||.++|
T Consensus 140 ------~~~~~~~~~~~~~~~LT~rE~~vl~ll~~g~sn~~IA~~L~iS~~TV~~h~~~i~~KL~v~~r~e~~~~a~~~~ 213 (215)
T 1a04_A 140 ------SLRANRATTERDVNQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQER 213 (215)
T ss_dssp ------HC-------CCCGGGSCHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHT
T ss_pred ------HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
T ss_conf ------87624454578702089899999999998663126799978868799999999999809998899999999848
Q ss_pred C
Q ss_conf 9
Q gi|254780694|r 245 I 245 (246)
Q Consensus 245 l 245 (246)
|
T Consensus 214 l 214 (215)
T 1a04_A 214 I 214 (215)
T ss_dssp C
T ss_pred C
T ss_conf 9
No 6
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulator; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=99.79 E-value=4.2e-19 Score=140.12 Aligned_cols=65 Identities=37% Similarity=0.355 Sum_probs=62.6
Q ss_pred CCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
Q ss_conf 88888977999999998599979999994999889999999999980799889999999975898
Q gi|254780694|r 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 (246)
Q Consensus 182 ~~~~LT~RE~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~Gli 246 (246)
+.+.||+||.||+.|+++|+||+|||..|+||++||++|+++||+|||++||+|+|.+|+++|||
T Consensus 8 ~~~~LT~rE~~vl~~l~~G~s~~eIA~~L~iS~~TV~~h~~~i~~Kl~v~~r~~lv~~a~~~Gli 72 (74)
T 1fse_A 8 SKPLLTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMGEL 72 (74)
T ss_dssp CCCCCCHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHTTSC
T ss_pred CCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf 99987999999999999279999999997989999999999999995899999999999996290
No 7
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.79 E-value=4.4e-19 Score=139.97 Aligned_cols=63 Identities=35% Similarity=0.292 Sum_probs=61.6
Q ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
Q ss_conf 888977999999998599979999994999889999999999980799889999999975898
Q gi|254780694|r 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 (246)
Q Consensus 184 ~~LT~RE~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~Gli 246 (246)
..||+||.|||.|+++|+|++|||..|+||++||++|+++|++||||+|++|||++|.+.|||
T Consensus 196 ~~Ls~re~~il~~~~~G~~~~eia~~l~is~~tv~~h~~~~~~kl~~~~~~~~~~~a~~~~li 258 (258)
T 3clo_A 196 NILSEREKEILRCIRKGLSSKEIAATLYISVNTVNRHRQNILEKLSVGNSIEACRAAELMKLL 258 (258)
T ss_dssp TSSCHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf 999989999999998599999999894999999999999999985899999999999985999
No 8
>2krf_A Transcriptional regulatory protein COMA; activator, competence, DNA-binding, transcription regulation component regulatory system; NMR {Bacillus subtilis}
Probab=99.76 E-value=2.2e-18 Score=135.48 Aligned_cols=65 Identities=28% Similarity=0.342 Sum_probs=62.7
Q ss_pred CCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
Q ss_conf 88888977999999998599979999994999889999999999980799889999999975898
Q gi|254780694|r 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 (246)
Q Consensus 182 ~~~~LT~RE~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~Gli 246 (246)
....|||||.+||.|+++|+|++|||..|+||++||++|+++||+|||++||+|++++|.+.|||
T Consensus 9 ~~~~Lt~rE~~vl~~~~~G~s~~eIA~~l~iS~~TV~~~~~~i~~Kl~v~~r~elv~~A~~~Gli 73 (73)
T 2krf_A 9 EQDVLTPRECLILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL 73 (73)
T ss_dssp SSSSSCHHHHHHHHHHHTTSCHHHHHHHHTCCHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHTCC
T ss_pred CCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
T ss_conf 87888999999999999589999984161888999999999999980999999999999995799
No 9
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=99.76 E-value=1.3e-18 Score=136.93 Aligned_cols=65 Identities=32% Similarity=0.435 Sum_probs=62.3
Q ss_pred CCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
Q ss_conf 88888977999999998599979999994999889999999999980799889999999975898
Q gi|254780694|r 182 KDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 (246)
Q Consensus 182 ~~~~LT~RE~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~Gli 246 (246)
....||+||+||+.|+++|+|++|||..|+||++||++|+++||+|||++||+|++.+|.++|||
T Consensus 26 ~~~~LT~rE~evl~ll~~G~s~~eIA~~L~iS~~TV~~~~~~i~~Kl~v~~r~elv~~a~~~gli 90 (91)
T 2rnj_A 26 LYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 90 (91)
T ss_dssp TGGGCCSHHHHHHHHHHTTCCTTHHHHHHTCCHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHTCC
T ss_pred HHCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
T ss_conf 42617999999999999289999999997889999999999999990999999999999994899
No 10
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=99.75 E-value=2.6e-18 Score=135.04 Aligned_cols=63 Identities=29% Similarity=0.358 Sum_probs=61.1
Q ss_pred CCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
Q ss_conf 888897799999999859997999999499988999999999998079988999999997589
Q gi|254780694|r 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 (246)
Q Consensus 183 ~~~LT~RE~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~Gl 245 (246)
...|||||+|||.|+++|+||+|||..|+||++||++|+++||+|||++||+|++.+|.++||
T Consensus 19 ~~~LT~rE~~vl~lla~G~s~~eIA~~L~iS~~TV~~~~~~i~~Klgv~~r~elv~~a~~~~L 81 (82)
T 1je8_A 19 VNQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERI 81 (82)
T ss_dssp GGGSCHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
T ss_conf 341999999999999928999999989795999999999999998389999999999999479
No 11
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=99.75 E-value=4.8e-18 Score=133.33 Aligned_cols=66 Identities=26% Similarity=0.229 Sum_probs=62.9
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
Q ss_conf 988888977999999998599979999994999889999999999980799889999999975898
Q gi|254780694|r 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 (246)
Q Consensus 181 ~~~~~LT~RE~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~Gli 246 (246)
.+...||+||.+|+.|+++|+|++|||+.|+||++||++|+++||+|||++||+|+|.+|.+.|||
T Consensus 30 ~~~~~LT~rE~~vl~ll~~G~s~~eIA~~l~iS~~TV~~~~~~i~~KL~v~~~~elv~~a~~~Gli 95 (99)
T 1p4w_A 30 YGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVDNDIALLNYLSSVSMT 95 (99)
T ss_dssp CSSSSCCHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHTCS
T ss_pred CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
T ss_conf 888998999999999999389999997772998999999999999980999999999999996899
No 12
>3c57_A Two component transcriptional regulatory protein DEVR; response regulator, two-component regulatory system, DNA- binding protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=99.75 E-value=6.2e-19 Score=139.02 Aligned_cols=67 Identities=27% Similarity=0.306 Sum_probs=63.3
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
Q ss_conf 7988888977999999998599979999994999889999999999980799889999999975898
Q gi|254780694|r 180 WGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 (246)
Q Consensus 180 ~~~~~~LT~RE~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~Gli 246 (246)
.++...||+||.|||.|+++|+||+|||+.|+||++||++|+++||+|||++||+|+|.+|.++|++
T Consensus 22 ~~pl~~LT~rE~evl~ll~~G~s~~eIA~~L~iS~~TV~~~~~~i~~Klgv~~r~elv~~a~~~gl~ 88 (95)
T 3c57_A 22 QDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQAAVFATELKRS 88 (95)
T ss_dssp -----CCCHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCCC-----------
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf 7863304999999999999079999998794978999999999999997899999999999993999
No 13
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=99.73 E-value=5.2e-18 Score=133.09 Aligned_cols=62 Identities=27% Similarity=0.279 Sum_probs=60.8
Q ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
Q ss_conf 88977999999998599979999994999889999999999980799889999999975898
Q gi|254780694|r 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 (246)
Q Consensus 185 ~LT~RE~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~Gli 246 (246)
.||+||.+|+.|+++|+|++|||..|+||++||++|+++||+|||++||+|+|.+|++.||+
T Consensus 16 ~LT~rE~~vl~~l~~G~s~~eIA~~l~iS~~TV~~~~~~i~~Klgv~~r~elv~~a~~~Gl~ 77 (79)
T 1x3u_A 16 TLSERERQVLSAVVAGLPNKSIAYDLDISPRTVEVHRANVMAKMKAKSLPHLVRMALAGGFG 77 (79)
T ss_dssp HHCHHHHHHHHHHTTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf 59999999999999079999999997988989999999999980899999999999994999
No 14
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.71 E-value=1.4e-16 Score=123.95 Aligned_cols=112 Identities=16% Similarity=0.084 Sum_probs=82.0
Q ss_pred HHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 43333214457147503373689999999717875469899999999999999754201467798888897799999999
Q gi|254780694|r 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197 (246)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~RE~eVl~li 197 (246)
........++.+|+.++.+.......+........ ....... .... .......||+||.||++++
T Consensus 90 ~~~~al~~Ga~~yl~Kp~~~~el~~~i~~~l~~~~-----~~~~~~~-----~~~~-----~~~~~~~Lt~re~evl~ll 154 (208)
T 1yio_A 90 MTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLNA-----ERRQARE-----TQDQ-----LEQLFSSLTGREQQVLQLT 154 (208)
T ss_dssp CCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHHHH-----HHHHHHH-----HHHH-----HHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH-----HHHHHHH-----HHHH-----HCCCCCCCCHHHHHHHHHH
T ss_conf 99999977999895389999999999999997401-----3445555-----3321-----0011232246899999999
Q ss_pred HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf 85999799999949998899999999999807998899999999758
Q gi|254780694|r 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 (246)
Q Consensus 198 a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~G 244 (246)
++|+||+|||..|++|++||++|++|||+|||++||+|+|.+|.+..
T Consensus 155 ~~g~~~~eIa~~l~iS~~TV~~h~~~i~~KL~~~~~~elv~~~~~~~ 201 (208)
T 1yio_A 155 IRGLMNKQIAGELGIAEVTVKVHRHNIMQKLNVRSLANLVHLVEKYE 201 (208)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHC-
T ss_pred HCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 81564999999728768999999999999809999999999999973
No 15
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=99.68 E-value=7.8e-17 Score=125.53 Aligned_cols=58 Identities=31% Similarity=0.350 Sum_probs=57.4
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
Q ss_conf 7999999998599979999994999889999999999980799889999999975898
Q gi|254780694|r 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 (246)
Q Consensus 189 RE~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~Gli 246 (246)
||.|||.|+++|+|++|||..|+||++||++|+++||+|||++||+|++.+|.++|||
T Consensus 2 RE~evl~ll~~G~s~~eIA~~l~iS~~TV~~h~~~i~~Klgv~~r~elv~~a~~~gli 59 (61)
T 2jpc_A 2 RERQVLKLIDEGYTNHGISEKLHISIKTVETHRMNMMRKLQVHKVTELLNCARRMRLI 59 (61)
T ss_dssp HHHHHHHHHHTSCCSHHHHHHTCSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHCSCCC
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf 7999999998279999999896989999999999999881999999999999996495
No 16
>3ix3_A Transcriptional activator protein LASR; quorum sensing receptor, triphenyl mimics, DNA- binding, quorum sensing; HET: OHN; 1.40A {Pseudomonas aeruginosa} PDB: 3ix4_A* 3ix8_A* 3jpu_A* 2uv0_E*
Probab=98.79 E-value=4e-09 Score=76.05 Aligned_cols=146 Identities=11% Similarity=0.055 Sum_probs=113.7
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 37999973279999999999999871930230002666311123210006895899999996698451738999985232
Q gi|254780694|r 31 DLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFC 110 (246)
Q Consensus 31 d~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 110 (246)
|.+..+..+.+..++.+.+..+.+.+||+++.+...+..........+.++||.+|...|...++...||++..+.+...
T Consensus 5 d~f~~l~~a~~~~el~~~l~~~~~~lGf~~~~y~~~~~~~~~~~~~~~~~nyP~~W~~~Y~~~~y~~~DPv~~~~~~~~~ 84 (173)
T 3ix3_A 5 DGFLELERSSGKLEWSAILQKMASDLGFSKILFGLLPKDSQDYENAFIVGNYPAAWREHYDRAGYARVDPTVSHCTQSVL 84 (173)
T ss_dssp --CHHHHHCCHHHHHHHHHHHHHHHTTCSEEEEEEECTTCCCGGGSEEEECSCHHHHHHHHHTTGGGTCHHHHHHHHCSS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEECCCCHHHHHHHHHCCCEEECHHHHHHHCCCC
T ss_conf 99999996899999999999999984999799998528888877668975899899999998899636979998756899
Q ss_pred HHHCCCHH----------HHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCH-----HHHHHHHHHHHHHHHHHHH
Q ss_conf 44303254----------33332144571475033736899999997178754698-----9999999999999975420
Q gi|254780694|r 111 PVFHTLPE----------NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR-----DRLWEIGLLAAYQANMFKS 175 (246)
Q Consensus 111 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 175 (246)
|+.|.... ......++..|+..+.+.+.+..+.+............ .....+.++..+.++....
T Consensus 85 P~~W~~~~~~~~~~~~~~~~a~~~Gl~~G~tvP~~~~~g~~~~~s~a~~~~~~~~~~~~~~~~~~~l~lla~~~~~~~~~ 164 (173)
T 3ix3_A 85 PIFWEPSIYQTRKQHEFFEEASAAGLVYGLTMPLHGARGELGALSLSVEAENRAEANRFMESVLPTLWMLKDYALQSGAG 164 (173)
T ss_dssp CEECCGGGCCSHHHHHHHHHHHHTTCCSEEEEEEECTTCCEEEEEEECCCSSHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred CEECCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 96827641228258999999997699764499986599998999996178881189999999899999999999999984
Q ss_pred C
Q ss_conf 1
Q gi|254780694|r 176 Y 176 (246)
Q Consensus 176 ~ 176 (246)
.
T Consensus 165 l 165 (173)
T 3ix3_A 165 L 165 (173)
T ss_dssp H
T ss_pred C
T ss_conf 3
No 17
>2avx_A Regulatory protein SDIA; homoserine lactone, quorum sensing, transcription; HET: HTF; NMR {Escherichia coli}
Probab=98.77 E-value=3.4e-09 Score=76.48 Aligned_cols=147 Identities=9% Similarity=-0.040 Sum_probs=116.6
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 13799997327999999999999987193023000266631112321000689589999999669845173899998523
Q gi|254780694|r 30 SDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELF 109 (246)
Q Consensus 30 ~d~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 109 (246)
.+++.++..+.+..++...+...++.+||++|.+....+.....+...+.+++|.+|...|...++...||++..+....
T Consensus 11 ~~~l~~l~~a~s~~~l~~~l~~~~~~lGf~~~~~~~~~~~~~~~~~~~~~~nyP~~W~~~Y~~~~~~~~DPv~~~~~~~~ 90 (171)
T 2avx_A 11 RTMLLRFQRMETAEEVYHEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSYYQAKNFLAIDPVLNPENFSQ 90 (171)
T ss_dssp HHHHHHHHHTCSHHHHHHHHHHHHHTTTCSCEEEEEEECCTTSCCEEEEEECCCHHHHHHHHHTTGGGTCGGGCTTTCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEEECCCHHHHHHHHHCCCEECCHHHHHHHCCC
T ss_conf 99999999589999999999999998599889998645899888766898079989999999788845393788985579
Q ss_pred HHHHCCCH--------HHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCC---CCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 24430325--------433332144571475033736899999997178754---69899999999999999754201
Q gi|254780694|r 110 CPVFHTLP--------ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRI---ILRDRLWEIGLLAAYQANMFKSY 176 (246)
Q Consensus 110 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 176 (246)
.|+.|... .......++..|+..+.+.+.+..+.+......... ........+.+++...+....+.
T Consensus 91 ~p~~Ws~~~~~~~~~~~~~a~~~Gl~~G~tvpv~~~~g~~g~ls~a~~~~~~~~~~~~e~~~~l~~la~~ah~a~~rl 168 (171)
T 2avx_A 91 GHLMWNDDLFSEAQPLWEAARAHGLRRGVTQYLMLPERALGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMRL 168 (171)
T ss_dssp SEEECCTTTTSSCHHHHHHHHHHTCCEEEEEEECCTTCCEEEEEEEESCCCCCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 988678452440799999999849974599998879998799998537887870003889999999999999999722
No 18
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=98.19 E-value=3.2e-06 Score=57.44 Aligned_cols=44 Identities=25% Similarity=0.253 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHHH-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 8977999999998-5999799999949998899999999999807
Q gi|254780694|r 186 LTGREVECLTWIS-EGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 186 LT~RE~eVl~lia-~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
||+++++|+.|.. +|+|..|||+.|+||+.||+.|++++..||.
T Consensus 26 Lpe~qR~v~~l~~~e~ls~~EIA~~lgiS~~aV~~~l~RA~~~L~ 70 (113)
T 1xsv_A 26 LTNKQRNYLELFYLEDYSLSEIADTFNVSRQAVYDNIRRTGDLVE 70 (113)
T ss_dssp SCHHHHHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 999999999999991999999999989699999999999999999
No 19
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn- helix motif; 3.00A {Mycobacterium tuberculosis H37RV}
Probab=98.05 E-value=8.5e-06 Score=54.70 Aligned_cols=49 Identities=18% Similarity=0.142 Sum_probs=44.5
Q ss_pred CCCCCHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 88889779999999-98599979999994999889999999999980799
Q gi|254780694|r 183 DFELTGREVECLTW-ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 (246)
Q Consensus 183 ~~~LT~RE~eVl~l-ia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~ 231 (246)
...|+|.+++|+.+ .-+|+|++|||+.|++|+.||++++.++..||-..
T Consensus 13 l~~Lp~~~r~v~~l~~~~g~s~~EIA~~lgis~~tvk~~l~Ra~~~Lr~~ 62 (70)
T 2o8x_A 13 IADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLAD 62 (70)
T ss_dssp TTSSCHHHHHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC-
T ss_pred HHCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 98699999999998999099999999998979999999999999999998
No 20
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=98.02 E-value=1.2e-05 Score=53.76 Aligned_cols=44 Identities=23% Similarity=0.323 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 897799999999-85999799999949998899999999999807
Q gi|254780694|r 186 LTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 186 LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
|++++++|+.|. -+|+|.+|||..|++|+.||++|+++...||.
T Consensus 23 L~~~qR~vi~L~~~~~ls~~EIA~~lgis~~~V~~~l~Ra~~~L~ 67 (113)
T 1s7o_A 23 LTDKQMNYIELYYADDYSLAEIADEFGVSRQAVYDNIKRTEKILE 67 (113)
T ss_dssp SCHHHHHHHHHHHHTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 999999999999997312999999989799999999999999997
No 21
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative stress, transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=97.98 E-value=1.3e-05 Score=53.42 Aligned_cols=44 Identities=23% Similarity=0.310 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 8897799999999-8599979999994999889999999999980
Q gi|254780694|r 185 ELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 185 ~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
.|++++++|+.+. -+|+|++|||..|++|++||+.++.++..||
T Consensus 37 ~L~~~~r~vi~l~~~~g~s~~eIA~~lgis~~tV~~~l~Ra~~~L 81 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRAL 81 (92)
T ss_dssp TSCHHHHHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 799999999999999399999999998969999999999999999
No 22
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=97.91 E-value=2e-05 Score=52.27 Aligned_cols=44 Identities=32% Similarity=0.443 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 89779999999985999799999949998899999999999807
Q gi|254780694|r 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 186 LT~RE~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
+++.++.++.+..+|+|++|||..||||++||+.++.++..||-
T Consensus 110 ~~~~~~~~~~~~~~g~s~~EIA~~lgis~~~V~~~~~Ra~~kl~ 153 (164)
T 3mzy_A 110 FSKFEKEVLTYLIRGYSYREIATILSKNLKSIDNTIQRIRKKSE 153 (164)
T ss_dssp SCHHHHHHHHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 76999999876562389999999989199999999999999999
No 23
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=97.74 E-value=5.5e-05 Score=49.48 Aligned_cols=44 Identities=23% Similarity=0.191 Sum_probs=41.2
Q ss_pred CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 8897799999999-8599979999994999889999999999980
Q gi|254780694|r 185 ELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 185 ~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
.|++.+++|+.+. -.|+|.+|||+.|++|++||+.++.++..||
T Consensus 140 ~L~~~~r~ii~l~y~~g~s~~eIA~~lg~s~~tV~~~l~ra~~~L 184 (194)
T 1or7_A 140 SLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 184 (194)
T ss_dssp HSCHHHHHHHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 099999999999998398999999998939999999999999999
No 24
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=97.70 E-value=7.4e-05 Score=48.65 Aligned_cols=45 Identities=27% Similarity=0.270 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 88897799999999-8599979999994999889999999999980
Q gi|254780694|r 184 FELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 184 ~~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
..|++||++|+.+. .+|+|-+|||..|+||..+|+...++++.||
T Consensus 186 ~~L~~rer~Ii~~ry~~~~tl~eIA~~lgiS~~rVrqi~~~Al~kL 231 (239)
T 1rp3_A 186 SKLPEREKLVIQLIFYEELPAKEVAKILETSVSRVSQLKAKALERL 231 (239)
T ss_dssp TTSCHHHHHHHHHHHTSCCCHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 3799999999999926999999999998959999999999999999
No 25
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc binding transcription factor; 2.40A {Rhodobacter sphaeroides 2} PDB: 2z2s_A
Probab=97.63 E-value=1.4e-05 Score=53.21 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 8897799999999-8599979999994999889999999999980
Q gi|254780694|r 185 ELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 185 ~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
.|++.+++|+.+. .+|+|.+|||..|+||+.||+.++.++++||
T Consensus 135 ~L~~~~r~vl~l~~~~g~s~~eIA~~lgis~~tV~~~l~ra~~kL 179 (184)
T 2q1z_A 135 RLPEAQRALIERAFFGDLTHRELAAETGLPLGTIKSRIRLALDRL 179 (184)
T ss_dssp TSCHHHHHHHHHHHHSCCSSCCSTTTCCCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 499999999999999299999999998939999999999999999
No 26
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1
Probab=97.45 E-value=0.00016 Score=46.53 Aligned_cols=108 Identities=13% Similarity=0.134 Sum_probs=69.3
Q ss_pred HHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 43333214457147503373689999999717875469899999999999999754201467798888897799999999
Q gi|254780694|r 118 ENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWI 197 (246)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~RE~eVl~li 197 (246)
........++.+|..+++........+..+...... ....... .........-...+....||++|.++|.++
T Consensus 85 ~~~~~~~~gaddyl~KP~~~~eL~~ri~~~l~r~~~-~~~~~~~------~~ld~~~~~~~~~g~~v~LT~~E~~iL~~L 157 (220)
T 1p2f_A 85 SVLKGFEAGADDYVTKPFNPEILLARVKRFLEREKK-GLYDFGD------LKIDATGFTVFLKGKRIHLPKKEFEILLFL 157 (220)
T ss_dssp HHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHCCC-SEEEETT------EEEETTTTEEEETTEECCCCHHHHHHHHHH
T ss_pred EEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHCCC-CCEECCC------EEECCCCCEEEECCEEECCCHHHHHHHHHH
T ss_conf 367544146522243573200189999999830546-8354188------378047629999998962899999999999
Q ss_pred HCC----CCHHHHHHHHC---CCHHHHHHHHHHHHHHHCCCC
Q ss_conf 859----99799999949---998899999999999807998
Q gi|254780694|r 198 SEG----KTSDEIAVILG---ISRNTVNNYIASIMRKTATKT 232 (246)
Q Consensus 198 a~G----~t~~eIA~~L~---iS~~TV~~hl~~i~~KLgv~~ 232 (246)
+++ .|..+|...+. ++.+||+.|++++++||+...
T Consensus 158 ~~~~g~vvsr~~l~~~vw~~~~~~~tv~~~I~rLRkKL~~~~ 199 (220)
T 1p2f_A 158 AENAGKVVTREKLLETFWEDPVSPRVVDTVIKRIRKAIEDDP 199 (220)
T ss_dssp HHTTTSCEEHHHHHHHHCSSCCCTHHHHHHHHHHHHHHCSST
T ss_pred HHCCCCEECHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 848996781999987860788886679999999999730078
No 27
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H
Probab=97.33 E-value=0.00044 Score=43.70 Aligned_cols=54 Identities=20% Similarity=0.306 Sum_probs=46.1
Q ss_pred CCCCCHHHHHHHHHH-----HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC-CCHHHH
Q ss_conf 888897799999999-----859997999999499988999999999998079-988999
Q gi|254780694|r 183 DFELTGREVECLTWI-----SEGKTSDEIAVILGISRNTVNNYIASIMRKTAT-KTRSGA 236 (246)
Q Consensus 183 ~~~LT~RE~eVl~li-----a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv-~~R~ea 236 (246)
...|++||++|+.+- .+.+|.+|||..|+||...|+...+++++||-- .++.+.
T Consensus 8 l~~L~~rEr~Ii~~ryGl~~~~~~tl~eIa~~lgiS~erVrqi~~~al~kLr~~~~~~~~ 67 (73)
T 1ku3_A 8 LSKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKYHESRTRK 67 (73)
T ss_dssp TTTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 872999999999998189999987899999998969999999999999999885877899
No 28
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=97.30 E-value=0.00051 Score=43.25 Aligned_cols=109 Identities=13% Similarity=0.057 Sum_probs=69.1
Q ss_pred HHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 33332144571475033736899999997178754698999999999999997542014677988888977999999998
Q gi|254780694|r 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198 (246)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~RE~eVl~lia 198 (246)
.......++..|+.++++.......+................ +...........-...+....||++|.++|.+++
T Consensus 91 ~~~al~~Gaddyl~KP~~~~eL~ari~a~lrr~~~~~~~~~~----~~~~~~d~~~~~v~~~g~~i~LT~~E~~lL~~L~ 166 (238)
T 2gwr_A 91 VVLGLESGADDYIMKPFKPKELVARVRARLRRNDDEPAEMLS----IADVEIDVPAHKVTRNGEQISLTPLEFDLLVALA 166 (238)
T ss_dssp HHHHHHTTCCEEEEESCCHHHHHHHHHHHCCCCSSCCCCEEE----ETTEEEETTTTEEEETTEEECCCHHHHHHHHHHH
T ss_pred HHHHHHCCCCEECCCCCCHHHHHHHHHHHHCCCCCCCCCEEE----CCCEEECCHHEEEEECCEEEECCHHHHHHHHHHH
T ss_conf 999997799880218999999999999996324578763784----1885873103099889989856899999999997
Q ss_pred CC----CCHHHHHHHHC-----CCHHHHHHHHHHHHHHHCCC
Q ss_conf 59----99799999949-----99889999999999980799
Q gi|254780694|r 199 EG----KTSDEIAVILG-----ISRNTVNNYIASIMRKTATK 231 (246)
Q Consensus 199 ~G----~t~~eIA~~L~-----iS~~TV~~hl~~i~~KLgv~ 231 (246)
+- .|..+|...+. .+.+||+.|++++++||+..
T Consensus 167 ~~~g~vvsr~~l~~~vwg~~~~~~~~tld~~I~rLRkKL~~~ 208 (238)
T 2gwr_A 167 RKPRQVFTRDVLLEQVWGYRHPADTRLVNVHVQRLRAKVEKD 208 (238)
T ss_dssp HSTTCCBCHHHHHHHHTCCC--CCTHHHHHHHHHHHHHHCSS
T ss_pred HCCCCEECHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 679970859999987447766887476999999999975317
No 29
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=97.27 E-value=0.00046 Score=43.54 Aligned_cols=45 Identities=31% Similarity=0.446 Sum_probs=38.8
Q ss_pred CCCHHHHHHHHHH-----HCCC--CHHHHHHHHCC-CHHHHHHHHHHHHHHHCC
Q ss_conf 8897799999999-----8599--97999999499-988999999999998079
Q gi|254780694|r 185 ELTGREVECLTWI-----SEGK--TSDEIAVILGI-SRNTVNNYIASIMRKTAT 230 (246)
Q Consensus 185 ~LT~RE~eVl~li-----a~G~--t~~eIA~~L~i-S~~TV~~hl~~i~~KLgv 230 (246)
.||+++.+|++++ ..|. |.+|||+.+|+ |+.||..|++.+- |.|.
T Consensus 3 ~LT~kq~~il~~I~~~~~~~g~~PS~~Eia~~~GikS~s~v~~~l~~L~-~~G~ 55 (202)
T 1jhf_A 3 ALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKALA-RKGV 55 (202)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHHHH-HTTS
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHH-HCCC
T ss_conf 4599999999999999998298966999999849997289999999887-6385
No 30
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D domain swapping; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=97.21 E-value=0.00013 Score=47.06 Aligned_cols=112 Identities=8% Similarity=0.033 Sum_probs=67.8
Q ss_pred HHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 33321445714750337368999999971787546989999999999999975420146779888889779999999985
Q gi|254780694|r 120 ITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWISE 199 (246)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~RE~eVl~lia~ 199 (246)
......++.+|+.++++.......+................................-...+....||++|.++|.++++
T Consensus 91 ~~~l~~Gaddyl~KP~~~~eL~ari~~~~rr~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~g~~i~LT~~E~~lL~~L~~ 170 (230)
T 2oqr_A 91 VVGLELGADDYVTKPYSARELIARIRAVLRRGGDDDSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMR 170 (230)
T ss_dssp HHHHHHCCSCCCCSSCCHHHHHHHHHHHHTTTTCTTSTTCCSCEEETTEEEETTTTEEEESSBCCCCCHHHHHHHHHHHH
T ss_pred HHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCEEEECCCCEEEECCEEEECCHHHHHHHHHHHH
T ss_conf 88887699889969999999999999998431455555667759989999822458999899897179999999999981
Q ss_pred C----CCHHHHHHHHC-----CCHHHHHHHHHHHHHHHCCC
Q ss_conf 9----99799999949-----99889999999999980799
Q gi|254780694|r 200 G----KTSDEIAVILG-----ISRNTVNNYIASIMRKTATK 231 (246)
Q Consensus 200 G----~t~~eIA~~L~-----iS~~TV~~hl~~i~~KLgv~ 231 (246)
- .|..+|...+. .+.+||+.|++++++||+..
T Consensus 171 ~~~~vvsr~~l~~~vwg~~~~~~~~tv~~~I~rLRkKL~~~ 211 (230)
T 2oqr_A 171 NSGRVLTRGQLIDRVWGADYVGDTKTLDVHVKRLRSKIEAD 211 (230)
T ss_dssp TTTSCEEHHHHHHHHTSSCCTTHHHHHHHHHHHHHHHHCSS
T ss_pred CCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 89986269999998639776888677999999999974217
No 31
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=97.17 E-value=0.00039 Score=44.03 Aligned_cols=109 Identities=16% Similarity=0.175 Sum_probs=66.8
Q ss_pred HHHHHCCCCCEEEEECCCHHHHHHHHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf 3333214457147503373689999999717----875469899999999999999754201467798888897799999
Q gi|254780694|r 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFP----KGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECL 194 (246)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~RE~eVl 194 (246)
...+...++.+|+.++++.......+..... ........... ...........-...+....||++|.++|
T Consensus 94 ~v~al~~GAddyl~KP~~~~eL~a~i~~~~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~v~~~g~~i~LT~~E~~lL 168 (233)
T 1ys7_A 94 RVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATSSSETITV-----GPLEVDIPGRRARVNGVDVDLTKREFDLL 168 (233)
T ss_dssp CCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHHHCCCCCCCCEEEE-----TTEEEETTTTEEEETTEECCCCHHHHHHH
T ss_pred HHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC-----CCCCCCCCCCEEEECCEEEECCCHHHHHH
T ss_conf 9999977992999789987999999999998640245444322235-----87545654429999999996470478999
Q ss_pred HHHHCC----CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 999859----9979999994-----9998899999999999807998
Q gi|254780694|r 195 TWISEG----KTSDEIAVIL-----GISRNTVNNYIASIMRKTATKT 232 (246)
Q Consensus 195 ~lia~G----~t~~eIA~~L-----~iS~~TV~~hl~~i~~KLgv~~ 232 (246)
.++++. .|..+|...+ ..+.+||+.|++++++||+..+
T Consensus 169 ~~L~~~~g~vvsr~~L~~~vw~~~~~~~~rtvd~~I~rLRkKL~~~~ 215 (233)
T 1ys7_A 169 AVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGG 215 (233)
T ss_dssp HHHHHTTTCCBCHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHCC-
T ss_pred HHHHHCCCEEEEHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 99985378888199999998486778884769999999999717789
No 32
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=97.17 E-value=0.00081 Score=41.99 Aligned_cols=51 Identities=25% Similarity=0.305 Sum_probs=45.3
Q ss_pred CCCCHHHHHHHHHHH-----CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 888977999999998-----599979999994999889999999999980799889
Q gi|254780694|r 184 FELTGREVECLTWIS-----EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 (246)
Q Consensus 184 ~~LT~RE~eVl~lia-----~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~ 234 (246)
..|++||++|+.+-= +.+|.+|||..|+||..+|+.--+++++||--..+.
T Consensus 4 ~~L~~rEr~Ii~~ryGl~~~~~~tl~eia~~lgvS~erVrqie~~Al~kLr~~~~~ 59 (68)
T 2p7v_B 4 AGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRS 59 (68)
T ss_dssp CCCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSCCGG
T ss_pred HCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 34999999999998389999977899999998969999999999999998826789
No 33
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=97.17 E-value=4.7e-05 Score=49.91 Aligned_cols=45 Identities=27% Similarity=0.282 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 8889779999999-98599979999994999889999999999980
Q gi|254780694|r 184 FELTGREVECLTW-ISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 184 ~~LT~RE~eVl~l-ia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
..|+++|++|+.+ ..+|+|.+|||..|+||+.+|+...+++.+||
T Consensus 197 ~~L~~~er~Vi~l~y~~~~t~~EIA~~lgiS~~rV~qi~~~Al~kL 242 (243)
T 1l0o_C 197 EELDERERLIVYLRYYKDQTQSEVASRLGISQVQMSRLEKKILQHI 242 (243)
T ss_dssp ----------------------------------------------
T ss_pred HHCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 8599999999999806999899999998949999999999999862
No 34
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix-turn-helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1
Probab=97.08 E-value=0.00055 Score=43.07 Aligned_cols=111 Identities=14% Similarity=0.160 Sum_probs=66.5
Q ss_pred HHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 33332144571475033736899999997178754698999999999999997542014677988888977999999998
Q gi|254780694|r 119 NITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTWIS 198 (246)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~RE~eVl~lia 198 (246)
.......++.+|+.++++.......+................ ............-...+....||++|.++|.+++
T Consensus 89 ~~~~l~~Gaddyl~KP~~~~eL~a~i~~~~~~~~~~~~~~~~----~~~~~~d~~~~~~~~~~~~i~Lt~~E~~lL~~L~ 164 (225)
T 1kgs_A 89 RVKGLNMGADDYLPKPFDLRELIARVRALIRRKSESKSTKLV----CGDLILDTATKKAYRGSKEIDLTKKEYQILEYLV 164 (225)
T ss_dssp HHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHHCCSCSSEEE----ETTEEEETTTTEEEETTEEECCCHHHHHHHHHHH
T ss_pred HHHHHHCCCCEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCC----CCCCCCCHHHCCCCCCCEEEECCHHHHHHHHHHH
T ss_conf 999997799852458999999999999997113346775330----4764456655031128978626579999999987
Q ss_pred CC----CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHCCCCH
Q ss_conf 59----9979999994-----99988999999999998079988
Q gi|254780694|r 199 EG----KTSDEIAVIL-----GISRNTVNNYIASIMRKTATKTR 233 (246)
Q Consensus 199 ~G----~t~~eIA~~L-----~iS~~TV~~hl~~i~~KLgv~~R 233 (246)
+. .|..+|...+ .++.+||+.|++++++||+..+.
T Consensus 165 ~~~~~vvsr~~L~~~vwg~~~~~~~~tl~~~I~rLR~KL~~~~~ 208 (225)
T 1kgs_A 165 MNKNRVVTKEELQEHLWSFDDEVFSDVLRSHIKNLRKKVDKGFK 208 (225)
T ss_dssp HTTTSCEEHHHHHHHCC-----CHHHHHHHHHHHHHHHHHTTCS
T ss_pred HCCCEEECHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 52434442999999871777787657699999999998457799
No 35
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=96.95 E-value=0.0015 Score=40.18 Aligned_cols=54 Identities=22% Similarity=0.291 Sum_probs=47.2
Q ss_pred CCCCHHHHHHHHHH-----HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 88897799999999-----8599979999994999889999999999980799889999
Q gi|254780694|r 184 FELTGREVECLTWI-----SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 (246)
Q Consensus 184 ~~LT~RE~eVl~li-----a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav 237 (246)
..|++||++|+.+- .+.+|..|||..++||..-|+..-+++++||.-..+.+-.
T Consensus 17 ~~L~~rE~~Vi~~rfGL~~~~~~Tl~eI~~~lgiSreRVRQie~~Al~kLr~~~~~~~L 75 (87)
T 1tty_A 17 KTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKYL 75 (87)
T ss_dssp TTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTTBSSHHH
T ss_pred HCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 64999999999998078899965799999895988999999999999998670788999
No 36
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=96.84 E-value=0.002 Score=39.44 Aligned_cols=45 Identities=24% Similarity=0.302 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHHHH-----CCC--CHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf 88977999999998-----599--97999999499988999999999998079
Q gi|254780694|r 185 ELTGREVECLTWIS-----EGK--TSDEIAVILGISRNTVNNYIASIMRKTAT 230 (246)
Q Consensus 185 ~LT~RE~eVl~lia-----~G~--t~~eIA~~L~iS~~TV~~hl~~i~~KLgv 230 (246)
.||+||++|+.++. .|. |.+|||..+++|..++-.|+.. +.|.|.
T Consensus 2 ~LT~kq~~il~~I~~~~~~~G~~PS~reIa~~~Giss~s~v~~L~~-Le~kG~ 53 (196)
T 3k2z_A 2 DLTERQRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIA-LEKKGY 53 (196)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHH-HHHTTS
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHH-HHHCCC
T ss_conf 9898999999999999998498966999999829996457888999-987583
No 37
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=96.83 E-value=0.0026 Score=38.71 Aligned_cols=40 Identities=15% Similarity=0.121 Sum_probs=27.6
Q ss_pred CCCCHHHH-HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 88897799-99999985999799999949998899999999
Q gi|254780694|r 184 FELTGREV-ECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 (246)
Q Consensus 184 ~~LT~RE~-eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~ 223 (246)
-.||+-|+ +|..+..+|+|..+||..|++|..||..+++.
T Consensus 5 ~~lt~~~R~~I~~l~~~G~s~~~IAk~lg~s~stV~r~lk~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLNVSLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 87999999999999997999999999989578999999997
No 38
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=96.80 E-value=0.002 Score=39.50 Aligned_cols=53 Identities=21% Similarity=0.374 Sum_probs=45.2
Q ss_pred CCCHHHHHHHHHH-----HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC-CCHHHHH
Q ss_conf 8897799999999-----859997999999499988999999999998079-9889999
Q gi|254780694|r 185 ELTGREVECLTWI-----SEGKTSDEIAVILGISRNTVNNYIASIMRKTAT-KTRSGAI 237 (246)
Q Consensus 185 ~LT~RE~eVl~li-----a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv-~~R~eav 237 (246)
.|++||++|+.+- .+.+|-+|||..|+||...|+...+++++||-- .+|.+-.
T Consensus 375 ~L~~REr~II~~RfGl~~~~~~Tl~EIg~~lgvSreRVrQIe~kAL~KLR~~~~r~~~l 433 (438)
T 1l9z_H 375 KLSEREAMVLKLRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKYHESRTRKL 433 (438)
T ss_pred CCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_conf 59999999999707778998503999999989799999999999999988677868999
No 39
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H 1ku2_A 3lev_A* 3les_A*
Probab=96.53 E-value=0.0018 Score=39.70 Aligned_cols=45 Identities=22% Similarity=0.391 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHHH-----HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 8897799999999-----85999799999949998899999999999807
Q gi|254780694|r 185 ELTGREVECLTWI-----SEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 185 ~LT~RE~eVl~li-----a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
.|++||++|+.+- .+.+|-+|||..++||...|+..-+++++||-
T Consensus 360 ~L~~REr~II~lRfGL~~~~~~Tl~EIg~~lgvSreRVrQIe~~AL~KLR 409 (423)
T 2a6h_F 360 KLSEREAMVLKLRKGLIDGREHTLEEVGAFFGVTRERIRQIENKALRKLK 409 (423)
T ss_dssp SSCHHHHHHHHHHHHTTCC-----CHHHHSSSSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 59999999999706678998603999999989799999999999999988
No 40
>1tlh_B Sigma-70, RNA polymerase sigma factor RPOD; anti-sigma, transcription; NMR {Escherichia coli} SCOP: a.4.13.2
Probab=96.42 E-value=0.0028 Score=38.51 Aligned_cols=51 Identities=24% Similarity=0.265 Sum_probs=44.1
Q ss_pred CCCCCHHHHHHHHHHH-----CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCH
Q ss_conf 8888977999999998-----59997999999499988999999999998079988
Q gi|254780694|r 183 DFELTGREVECLTWIS-----EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 (246)
Q Consensus 183 ~~~LT~RE~eVl~lia-----~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R 233 (246)
...|++||++|+.+-= +-+|-+|||..++||...|+..-+++++||--..+
T Consensus 16 l~~L~~rEr~Il~~ryGl~~~~~~tl~eIa~~lgvSrerVRQie~~Al~kLr~~~~ 71 (81)
T 1tlh_B 16 LAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 71 (81)
T ss_dssp TTTCCHHHHHHHHHHTCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCSSCC
T ss_pred HHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHH
T ss_conf 97099999999999827899985579999999897999999999999999857067
No 41
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, protein structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=96.42 E-value=0.0045 Score=37.19 Aligned_cols=44 Identities=18% Similarity=0.214 Sum_probs=34.5
Q ss_pred CCHHH-------HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 89779-------99999998599979999994999889999999999980799
Q gi|254780694|r 186 LTGRE-------VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 (246)
Q Consensus 186 LT~RE-------~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~ 231 (246)
|||.| .+|++++.+|+|+.+||..+++|..||.. +++-. |-|..
T Consensus 37 ~T~~E~~~la~R~~va~lL~~g~syreIa~~~gvS~aTIsR-v~r~L-~~g~~ 87 (107)
T 3frw_A 37 CTINELLSLSQRFEVAKMLTDKRTYLDISEKTGASTATISR-VNRSL-NYGND 87 (107)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHH-HHHHH-HHSCS
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHH-HHHHH-HCCCC
T ss_conf 99999999999999999988699999999996987475899-99998-83895
No 42
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bonds; 2.05A {Sulfolobus tokodaii str} SCOP: a.4.5.50
Probab=96.37 E-value=0.0043 Score=37.34 Aligned_cols=45 Identities=29% Similarity=0.421 Sum_probs=38.5
Q ss_pred CCCCCHHHHHHHHHHH--CC-CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 8888977999999998--59-997999999499988999999999998
Q gi|254780694|r 183 DFELTGREVECLTWIS--EG-KTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 183 ~~~LT~RE~eVl~lia--~G-~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
.++||+.+..||..+. .| +|..|||..+++|..||..|++.+-.|
T Consensus 16 ~~gLs~~~~~iL~~L~~~~~~~t~~eia~~~~~~~~tvs~~l~~L~~~ 63 (109)
T 2d1h_A 16 CYKITDTDVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIEL 63 (109)
T ss_dssp HHTCCHHHHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 669599999999999975989899999999897885899999999988
No 43
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=96.26 E-value=0.0044 Score=37.27 Aligned_cols=40 Identities=20% Similarity=0.429 Sum_probs=33.9
Q ss_pred CCCCCCHHHH-HHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 8888897799-999999859997999999499988999999
Q gi|254780694|r 182 KDFELTGREV-ECLTWISEGKTSDEIAVILGISRNTVNNYI 221 (246)
Q Consensus 182 ~~~~LT~RE~-eVl~lia~G~t~~eIA~~L~iS~~TV~~hl 221 (246)
+...||+.+. ++.++++.|.|.++||..++||..|+..|+
T Consensus 2 Rp~kLt~~q~~~a~~l~~~G~s~~~iA~~~gVsr~TlYryl 42 (52)
T 1jko_C 2 RPRAINKHEQEQISRLLEKGHPRQQLAIIFGIGVSTLYRYF 42 (52)
T ss_dssp CCCSSCTTHHHHHHHHHHTTCCHHHHHHTTSCCHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 79879999999999999978989999999797999999985
No 44
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=96.22 E-value=0.0058 Score=36.48 Aligned_cols=37 Identities=24% Similarity=0.254 Sum_probs=31.8
Q ss_pred CCHHH-------HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 89779-------999999985999799999949998899999999
Q gi|254780694|r 186 LTGRE-------VECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 (246)
Q Consensus 186 LT~RE-------~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~ 223 (246)
||+.| .+|++++.+|+|+.+|+..+++|..||.. +++
T Consensus 54 ~T~~E~~~la~R~~Va~lL~~g~syreIa~~tgvS~aTIsR-V~r 97 (119)
T 3kor_A 54 CTVNEIQSLSQRLQVAKMIKQGYTYATIEQESGASTATISR-VKR 97 (119)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHCCCHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHH-HHH
T ss_conf 99999999999999999988599999999996987454799-999
No 45
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=96.14 E-value=0.0047 Score=37.05 Aligned_cols=38 Identities=21% Similarity=0.298 Sum_probs=31.3
Q ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 999999985999799999949998899999999999807998
Q gi|254780694|r 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 (246)
Q Consensus 191 ~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~ 232 (246)
.+|.++..+|+|.++||..|+||..||..++ +.-|+++
T Consensus 166 ~~I~~l~~~G~s~~~IA~~l~is~~Tv~R~l----~~~Gl~~ 203 (209)
T 2r0q_C 166 HRVVEMLEEGQAISKIAKEVNITRQTVYRIK----HDNGLSS 203 (209)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHH----TTCC---
T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH----HHCCCCC
T ss_conf 9999999875999999999896999999999----9779972
No 46
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structural genomics; 1.99A {Neisseria meningitidis MC58} PDB: 2p6s_A 2p6t_A
Probab=96.08 E-value=0.014 Score=34.08 Aligned_cols=47 Identities=13% Similarity=0.164 Sum_probs=42.2
Q ss_pred CCCCCCCHHHHHHHHHHHCC--CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 98888897799999999859--997999999499988999999999998
Q gi|254780694|r 181 GKDFELTGREVECLTWISEG--KTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 181 ~~~~~LT~RE~eVl~lia~G--~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
.+...|.+.+++|++.+.+- .|+.+||+.+++|+.||+..++++..+
T Consensus 3 m~~~~LD~~D~~Il~~L~~d~R~s~~eiA~~~gls~~tv~~Ri~rLe~~ 51 (162)
T 2p5v_A 3 MPQLTLDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDA 51 (162)
T ss_dssp --CCCCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 8989808999999999998379999999999892999999999999857
No 47
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=95.97 E-value=0.016 Score=33.73 Aligned_cols=47 Identities=23% Similarity=0.261 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 888977999999998--599979999994999889999999999980799
Q gi|254780694|r 184 FELTGREVECLTWIS--EGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 (246)
Q Consensus 184 ~~LT~RE~eVl~lia--~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~ 231 (246)
.+||..|.+||..+. .|.|..|||+.+++|..||..+++.+-.| |.-
T Consensus 148 ~~ls~~~~~iL~~L~~~~~~s~~ela~~l~~s~~tv~r~l~~Le~~-GlV 196 (244)
T 2wte_A 148 RDYSREEMKLLNVLYETKGTGITELAKMLDKSEKTLINKIAELKKF-GIL 196 (244)
T ss_dssp SCCCHHHHHHHHHHHHHTCBCHHHHHHHHTCCHHHHHHHHHHHHHT-TSE
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-CCE
T ss_conf 2999999999999997799899999999797988999999999988-999
No 48
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.4.5.5
Probab=95.93 E-value=0.018 Score=33.37 Aligned_cols=40 Identities=15% Similarity=0.302 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9779999999985999799999949998899999999999
Q gi|254780694|r 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 (246)
Q Consensus 187 T~RE~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~ 226 (246)
.|.=++||.++.+|++..|||..|++|..||.+|++.+..
T Consensus 30 ~p~R~~IL~~L~~~~~~~eLa~~lg~s~stvs~HL~~L~~ 69 (96)
T 1y0u_A 30 NPVRRKILRMLDKGRSEEEIMQTLSLSKKQLDYHLKVLEA 69 (96)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9899999998357997999999989199899999999998
No 49
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii OT3} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=95.90 E-value=0.014 Score=33.96 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=12.2
Q ss_pred HHHHHHHHCC-CCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9999999859-99799999949998899999999
Q gi|254780694|r 191 VECLTWISEG-KTSDEIAVILGISRNTVNNYIAS 223 (246)
Q Consensus 191 ~eVl~lia~G-~t~~eIA~~L~iS~~TV~~hl~~ 223 (246)
++||.++.+| +|..|||+.|++|+.||..|++.
T Consensus 23 ~~IL~~L~~~~~t~~ela~~l~~s~~~v~~HL~~ 56 (192)
T 1uly_A 23 RKILKLLRNKEMTISQLSEILGKTPQTIYHHIEK 56 (192)
T ss_dssp HHHHHHHTTCCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999999829967999999989198899999999
No 50
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=95.89 E-value=0.049 Score=30.55 Aligned_cols=43 Identities=21% Similarity=0.328 Sum_probs=34.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 779888889779999999985999799999949998899999999
Q gi|254780694|r 179 HWGKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 (246)
Q Consensus 179 ~~~~~~~LT~RE~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~ 223 (246)
..++...+.+ .+|.++..+|+|..+||..|++|..||..+++.
T Consensus 139 ~~Gr~~~~~~--~~i~~l~~~g~s~~~Ia~~l~vs~sTv~R~l~~ 181 (183)
T 1gdt_A 139 VFGRKRKIDR--DAVLNMWQQGLGASHISKTMNIARSTVYKVINE 181 (183)
T ss_dssp CCSSCCCSCH--HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred CCCCCCCCCH--HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 6399998899--999999986999999999989399999999873
No 51
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=95.78 E-value=0.02 Score=33.03 Aligned_cols=50 Identities=20% Similarity=0.287 Sum_probs=42.8
Q ss_pred CCCCCCCHHHHHHHHHHH--CCCCHHHHHHHH----CCCHHHHHHHHHHHHHHHCC
Q ss_conf 988888977999999998--599979999994----99988999999999998079
Q gi|254780694|r 181 GKDFELTGREVECLTWIS--EGKTSDEIAVIL----GISRNTVNNYIASIMRKTAT 230 (246)
Q Consensus 181 ~~~~~LT~RE~eVl~lia--~G~t~~eIA~~L----~iS~~TV~~hl~~i~~KLgv 230 (246)
+..+.||+.|.+||..+= .+.|.+||+..| +++..||.+-++++..|==+
T Consensus 3 ~k~~~lt~~E~~VM~~LW~~~~~t~~ei~~~l~~~~~~~~~Tv~t~L~RL~~KG~v 58 (123)
T 1okr_A 3 NKTYEISSAEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFI 58 (123)
T ss_dssp -CCCCCCHHHHHHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSE
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCE
T ss_conf 87899899999999999837997999999997512387542499999999988987
No 52
>1j5y_A Transcriptional regulator, biotin repressor family; structural genomics, TM1602, JCSG, conserved hypothetical protein, PSI; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=95.68 E-value=0.014 Score=34.10 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHC--C-CCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf 9779999999985--9-997999999499988999999999998079
Q gi|254780694|r 187 TGREVECLTWISE--G-KTSDEIAVILGISRNTVNNYIASIMRKTAT 230 (246)
Q Consensus 187 T~RE~eVl~lia~--G-~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv 230 (246)
++|..+|+.++.+ + .|..|+|+.|++|+.||+..++.+ ++-|.
T Consensus 20 ~eR~~~Il~~L~~~~~~vs~~eLa~~l~vS~~TIrrdi~~L-~~~G~ 65 (187)
T 1j5y_A 20 QERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYL-RSLGY 65 (187)
T ss_dssp HHHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHH-HHHTC
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHH-HHCCC
T ss_conf 99999999999985996769999999798999999999999-97799
No 53
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA binding protein; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: a.4.5.39
Probab=95.61 E-value=0.017 Score=33.49 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=40.1
Q ss_pred CCCCCCHHHHHHHHHHHC-C--CCHHHHHHHH----CCCHHHHHHHHHHHHHHH
Q ss_conf 888889779999999985-9--9979999994----999889999999999980
Q gi|254780694|r 182 KDFELTGREVECLTWISE-G--KTSDEIAVIL----GISRNTVNNYIASIMRKT 228 (246)
Q Consensus 182 ~~~~LT~RE~eVl~lia~-G--~t~~eIA~~L----~iS~~TV~~hl~~i~~KL 228 (246)
....||+-|.+|++.+=+ | .|.+||.+.| +++..||.+.++++..|=
T Consensus 3 k~~~L~~~E~~IM~ilW~~~~~~t~~eI~~~l~~~~~~~~sTV~t~L~rL~~KG 56 (138)
T 2g9w_A 3 KLTRLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKN 56 (138)
T ss_dssp CGGGCCHHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
T ss_conf 668788999999999984899927999999871047994879999999999779
No 54
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=95.60 E-value=0.031 Score=31.85 Aligned_cols=45 Identities=13% Similarity=0.234 Sum_probs=38.2
Q ss_pred CCCCCHHHHHHHHHHHCC--CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 888897799999999859--997999999499988999999999998
Q gi|254780694|r 183 DFELTGREVECLTWISEG--KTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 183 ~~~LT~RE~eVl~lia~G--~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
.+.|.+-.+++++.+.+- .|+.+||+.|++|+.||..+++++..+
T Consensus 3 ~~~lD~~D~~Il~~L~~d~R~s~~~ia~~lg~s~~tv~~Ri~rL~~~ 49 (152)
T 2cg4_A 3 NYLIDNLDRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQA 49 (152)
T ss_dssp -CCCCHHHHHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 55568999999999998489999999999891999999999999736
No 55
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymerase, holoenzyme, sigma70, open complex, CAP, CRP, CAMP-dependent; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=95.55 E-value=0.0027 Score=38.57 Aligned_cols=52 Identities=25% Similarity=0.335 Sum_probs=46.7
Q ss_pred CCCCHHHHHHHHHH-----HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 88897799999999-----85999799999949998899999999999807998899
Q gi|254780694|r 184 FELTGREVECLTWI-----SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSG 235 (246)
Q Consensus 184 ~~LT~RE~eVl~li-----a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~e 235 (246)
..|++||++|+.+- .+++|-+|||..++||..-|+.-.+.+.+||--.+|.+
T Consensus 549 ~~L~~re~~vi~~r~~~~~~~~~t~~ei~~~~~vs~~rv~qi~~~al~kLr~~~~~~ 605 (613)
T 3iyd_F 549 AGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSE 605 (613)
T ss_dssp TSSCHHHHHHHHHHHTSSSCCCCSTTGGGTTTSSCSSHHHHHHHHHHTTTTSCSSSC
T ss_pred HCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 279999999999981899999845999999989599999999999999975277999
No 56
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, symmetric dimer, signaling protein; NMR {Helicobacter pylori J99}
Probab=95.40 E-value=0.007 Score=35.97 Aligned_cols=107 Identities=11% Similarity=0.130 Sum_probs=62.8
Q ss_pred HHHHHHCCCCCEEEEECCCHHH-HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 4333321445714750337368-999999971787546989999999999999975420146779888889779999999
Q gi|254780694|r 118 ENITPPAGMDNRYCSLTFDVAR-IRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTGREVECLTW 196 (246)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~RE~eVl~l 196 (246)
........++.+|+.++++... ................. .... .........-...+....||++|.++|.+
T Consensus 82 ~~~~~l~~Gaddyl~KP~~~~~~l~~~~~~~~r~~~~~~~-~~~~------~~~d~~~~~~~~~~~~i~Lt~~E~~lL~~ 154 (223)
T 2hqr_A 82 EEVHAFEQGADDYIAKPYRSIKALVARIEARLRFWGSNVI-EIGD------LTISPDEEKIIYKGREVEVKGKPFEVLTH 154 (223)
T ss_dssp HHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSSCCCCSE-EETT------EEEETTTTEEEETTEEECCCSTTTHHHHH
T ss_pred HHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCCC-CCCC------CCCCCCCEEEEECCEEEECCCCHHHHHHH
T ss_conf 9999875399707872422025689999999720456621-1365------33555306999899996058606788999
Q ss_pred HHCC----CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHCCC
Q ss_conf 9859----9979999994-----999889999999999980799
Q gi|254780694|r 197 ISEG----KTSDEIAVIL-----GISRNTVNNYIASIMRKTATK 231 (246)
Q Consensus 197 ia~G----~t~~eIA~~L-----~iS~~TV~~hl~~i~~KLgv~ 231 (246)
+++- .|..+|...+ ..+.+||+.|++++++||...
T Consensus 155 L~~~~g~vvsr~~L~~~vw~~~~~~~~~tld~~I~rLRkKL~~~ 198 (223)
T 2hqr_A 155 LARHRDQIVSKEQLLDAIWEEPEMVTPNVIEVAINQIRQKMDKP 198 (223)
T ss_dssp HHHTCSEEEEHHHHHHHHCCSSCSCGGGTHHHHHHHHHHHHHTT
T ss_pred HHHCCCEEEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 98789927829999888418877888677999999999985276
No 57
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH motif, PSI, protein structure initiative; 1.55A {Archaeoglobus fulgidus dsm 4304} SCOP: a.4.5.50
Probab=95.37 E-value=0.033 Score=31.65 Aligned_cols=45 Identities=20% Similarity=0.345 Sum_probs=39.5
Q ss_pred CCCCCHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 88889779999999985--9997999999499988999999999998
Q gi|254780694|r 183 DFELTGREVECLTWISE--GKTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 183 ~~~LT~RE~eVl~lia~--G~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
.++||+.|..|+..+.+ +.|..+||..++++..||...+.+...|
T Consensus 15 ~~glt~~e~~v~~~L~~~~~~t~~eia~~~~~~~~~v~~~l~~L~~~ 61 (109)
T 1sfx_A 15 KLSFKPSDVRIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLLKR 61 (109)
T ss_dssp HTCCCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHC
T ss_conf 85999999999999980488879999999756701899999999959
No 58
>2ia0_A Putative HTH-type transcriptional regulator PF0864; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=95.34 E-value=0.038 Score=31.23 Aligned_cols=46 Identities=15% Similarity=0.217 Sum_probs=40.3
Q ss_pred CCCCCCHHHHHHHHHHHCC--CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 8888897799999999859--997999999499988999999999998
Q gi|254780694|r 182 KDFELTGREVECLTWISEG--KTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 182 ~~~~LT~RE~eVl~lia~G--~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
....|.+-.++|++.+.+- .|..+||+.+++|+.||..+++++...
T Consensus 11 ~~i~LD~~D~~IL~~Lq~d~R~s~~eIA~~lgls~~tv~~Ri~rLe~~ 58 (171)
T 2ia0_A 11 SEIHLDDLDRNILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQER 58 (171)
T ss_dssp ---CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 657749999999999998489999999999890999999999999978
No 59
>1jhg_A Trp operon repressor; complex (regulatory protein/peptide), DNA-binding regulatory protein; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 1trr_A* 1tro_A*
Probab=95.33 E-value=0.022 Score=32.71 Aligned_cols=36 Identities=22% Similarity=0.193 Sum_probs=31.0
Q ss_pred CCCHHHH-------HHHHHHHCC-CCHHHHHHHHCCCHHHHHHH
Q ss_conf 8897799-------999999859-99799999949998899999
Q gi|254780694|r 185 ELTGREV-------ECLTWISEG-KTSDEIAVILGISRNTVNNY 220 (246)
Q Consensus 185 ~LT~RE~-------eVl~lia~G-~t~~eIA~~L~iS~~TV~~h 220 (246)
-|||.|+ +|++++.+| +|.++|+..+++|..||..-
T Consensus 35 LlT~~E~~~la~R~~ia~~L~~g~~s~reI~~~~gvS~aTItR~ 78 (101)
T 1jhg_A 35 MLTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRG 78 (101)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 19999999999999999999908957999999969865777898
No 60
>2e1c_A Putative HTH-type transcriptional regulator PH1519; DNA-binding; HET: DNA; 2.10A {Pyrococcus horikoshii OT3} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=95.32 E-value=0.035 Score=31.50 Aligned_cols=44 Identities=16% Similarity=0.277 Sum_probs=40.7
Q ss_pred CCCCHHHHHHHHHHHCC--CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 88897799999999859--997999999499988999999999998
Q gi|254780694|r 184 FELTGREVECLTWISEG--KTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 184 ~~LT~RE~eVl~lia~G--~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
..|.+-.++||..+.+. .|..+||+.+++|+.||...++++..+
T Consensus 23 ~~LD~~D~~IL~~L~~d~R~s~~~iA~~lglS~~tV~~Ri~rL~~~ 68 (171)
T 2e1c_A 23 VPLDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRES 68 (171)
T ss_dssp -CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 8865999999999998389999999999891999999999999847
No 61
>2dbb_A Putative HTH-type transcriptional regulator PH0061; ASNC family, helix-turn-helix (HTH) domain, structural genomics, NPPSFA; 2.00A {Pyrococcus horikoshii OT3}
Probab=95.25 E-value=0.044 Score=30.82 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=39.0
Q ss_pred CCCCHHHHHHHHHHHCC--CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 88897799999999859--997999999499988999999999998
Q gi|254780694|r 184 FELTGREVECLTWISEG--KTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 184 ~~LT~RE~eVl~lia~G--~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
..|.+..++|++.+.+- .|..+||+.+|+|+.||..+++++...
T Consensus 5 ~~LD~~D~~Il~~L~~d~R~s~~eia~~lgls~~tv~~Ri~~L~~~ 50 (151)
T 2dbb_A 5 RKLDRVDMQLVKILSENSRLTYRELADILNTTRQRIARRIDKLKKL 50 (151)
T ss_dssp -CCCHHHHHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 6761999999999988599999999999896999999999999967
No 62
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=95.20 E-value=0.038 Score=31.22 Aligned_cols=41 Identities=20% Similarity=0.227 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 9779999999985--9997999999499988999999999998
Q gi|254780694|r 187 TGREVECLTWISE--GKTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 187 T~RE~eVl~lia~--G~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
-+-.++|+..+.+ ..|+.|||+.+++|+.||..+++++..+
T Consensus 2 D~~D~~Il~~L~~d~R~s~~eia~~lg~s~~tv~~Ri~~L~~~ 44 (150)
T 2pn6_A 2 DEIDLRILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLEKD 44 (150)
T ss_dssp CHHHHHHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 8899999999998489999999999893999999999999968
No 63
>2jzy_A Transcriptional regulatory protein PCOR; two-component-system response regulator, effector domain, DNA-binding, phosphoprotein, plasmid; NMR {Klebsiella pneumoniae}
Probab=94.95 E-value=0.036 Score=31.38 Aligned_cols=52 Identities=19% Similarity=0.248 Sum_probs=44.1
Q ss_pred CCCCCCCHHHHHHHHHHHCC----CCHHHHHHHHC-----CCHHHHHHHHHHHHHHHCCCC
Q ss_conf 98888897799999999859----99799999949-----998899999999999807998
Q gi|254780694|r 181 GKDFELTGREVECLTWISEG----KTSDEIAVILG-----ISRNTVNNYIASIMRKTATKT 232 (246)
Q Consensus 181 ~~~~~LT~RE~eVl~lia~G----~t~~eIA~~L~-----iS~~TV~~hl~~i~~KLgv~~ 232 (246)
+....||++|.++|.++++- .|-.+|.+.+. .+.+||+.|++++.+||+-.+
T Consensus 24 g~~i~Lt~~E~~lL~~L~~~~g~vvsr~~L~~~vw~~~~~~~~~~l~~~I~rLRkkL~~~~ 84 (112)
T 2jzy_A 24 GKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWNMNFDSDTNVIDVAVRRLRSKIDDDF 84 (112)
T ss_dssp TEECCCCHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCCSSCSTTHHHHHHHHHHTTTTTTS
T ss_pred CEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 9998659999999999984889874399999861488756541129999999999856758
No 64
>1gxq_A PHOB, phosphate regulon transcriptional regulatory protein; transcriptional activator, helix-winged-helix, sensory transduction; 2.0A {Escherichia coli} SCOP: a.4.6.1 PDB: 1gxp_A 1qqi_A 2z33_A
Probab=94.93 E-value=0.039 Score=31.15 Aligned_cols=53 Identities=11% Similarity=0.149 Sum_probs=45.2
Q ss_pred CCCCCCCHHHHHHHHHHHCC----CCHHHHHHHHC-----CCHHHHHHHHHHHHHHHCCCCH
Q ss_conf 98888897799999999859----99799999949-----9988999999999998079988
Q gi|254780694|r 181 GKDFELTGREVECLTWISEG----KTSDEIAVILG-----ISRNTVNNYIASIMRKTATKTR 233 (246)
Q Consensus 181 ~~~~~LT~RE~eVl~lia~G----~t~~eIA~~L~-----iS~~TV~~hl~~i~~KLgv~~R 233 (246)
+....||++|.++|.++++- .|-.+|.+.+. .+.+|++.|++++.+||+..+.
T Consensus 27 ~~~i~Lt~~E~~lL~~L~~~~g~vvsr~~l~~~vw~~~~~~~~~~l~~~I~rLRkkl~~~~~ 88 (106)
T 1gxq_A 27 EEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGH 88 (106)
T ss_dssp TEECCCCHHHHHHHHHHHHSCSSEECHHHHHHHHTCSSSCCCTHHHHHHHHHHHHHHGGGTG
T ss_pred CEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 99987599999999999867676776999999873877689987799999999998512599
No 65
>2oqg_A Possible transcriptional regulator, ARSR family protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=94.92 E-value=0.043 Score=30.91 Aligned_cols=40 Identities=18% Similarity=0.278 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHCC-CCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 97799999999859-99799999949998899999999999
Q gi|254780694|r 187 TGREVECLTWISEG-KTSDEIAVILGISRNTVNNYIASIMR 226 (246)
Q Consensus 187 T~RE~eVl~lia~G-~t~~eIA~~L~iS~~TV~~hl~~i~~ 226 (246)
.|.=++|+.++++| +|..+||..|++|..||..|++.+..
T Consensus 20 dp~Rl~Il~~L~~~~~~v~eLa~~l~is~s~vS~HL~~L~~ 60 (114)
T 2oqg_A 20 DETRWEILTELGRADQSASSLATRLPVSRQAIAKHLNALQA 60 (114)
T ss_dssp CHHHHHHHHHHHHSCBCHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999999819928999998888898899999999998
No 66
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=94.92 E-value=0.052 Score=30.37 Aligned_cols=42 Identities=26% Similarity=0.343 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHCC--CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 897799999999859--997999999499988999999999998
Q gi|254780694|r 186 LTGREVECLTWISEG--KTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 186 LT~RE~eVl~lia~G--~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
|.+..++||..+.+. .|+.+||+.+++|+.||...+++.-.+
T Consensus 2 lD~~D~~Il~~L~~d~r~s~~~ia~~~gls~~tv~~Ri~rL~~~ 45 (141)
T 1i1g_A 2 IDERDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEK 45 (141)
T ss_dssp CCSHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCC
T ss_conf 87799999999998489899999999892999999999997339
No 67
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix DNA binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=94.87 E-value=0.14 Score=27.61 Aligned_cols=46 Identities=15% Similarity=0.336 Sum_probs=40.5
Q ss_pred CCCCCCHHHHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 88888977999999998--59997999999499988999999999998
Q gi|254780694|r 182 KDFELTGREVECLTWIS--EGKTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 182 ~~~~LT~RE~eVl~lia--~G~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
..++||+.|..||..+. .|.|..+||+.+++|..||...+++.-.|
T Consensus 36 ~~~~lt~~q~~vL~~l~~~~~~t~~~La~~l~~~~~~vs~~l~~L~~~ 83 (150)
T 2rdp_A 36 TNYPITPPQFVALQWLLEEGDLTVGELSNKMYLACSTTTDLVDRMERN 83 (150)
T ss_dssp TTSSSCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCC
T ss_conf 777979999999999997799599999999896887899999999718
No 68
>2hwv_A DNA-binding response regulator VICR; essential response regulator, C-terminal domain, DNA- binding domain, transcription; 1.90A {Enterococcus faecalis V583}
Probab=94.80 E-value=0.065 Score=29.73 Aligned_cols=49 Identities=22% Similarity=0.243 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHCC----CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHCCC
Q ss_conf 888897799999999859----9979999994-----999889999999999980799
Q gi|254780694|r 183 DFELTGREVECLTWISEG----KTSDEIAVIL-----GISRNTVNNYIASIMRKTATK 231 (246)
Q Consensus 183 ~~~LT~RE~eVl~lia~G----~t~~eIA~~L-----~iS~~TV~~hl~~i~~KLgv~ 231 (246)
...||++|.++|.++++- .|-.+|.+.+ ..+.+|++.|+.++++||+-.
T Consensus 41 ~i~Lt~~E~~lL~~L~~~~g~vvsr~~L~~~vWg~~~~~~~~sl~~~I~rLRkKl~~~ 98 (121)
T 2hwv_A 41 KIELTHREFELLYYLAKHIGQVMTREHLLQTVWGYDYFGDVRTVDVTVRRLREKIEDS 98 (121)
T ss_dssp EEECCHHHHHHHHHHHHTTTCCBCHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHHCSS
T ss_pred EEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHC
T ss_conf 9876999999999998788998899999999719876678507856999999987616
No 69
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=94.75 E-value=0.17 Score=27.15 Aligned_cols=38 Identities=29% Similarity=0.364 Sum_probs=33.8
Q ss_pred CCCHHHH--HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 8897799--9999998599979999994999889999999
Q gi|254780694|r 185 ELTGREV--ECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 (246)
Q Consensus 185 ~LT~RE~--eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~ 222 (246)
.|||-|. -+.++...|.|..+||..+++|+.+|+.+++
T Consensus 117 ~lsp~e~a~~~~~l~~~g~t~~~iA~~lg~s~~~V~~~l~ 156 (230)
T 1vz0_A 117 DLSPVEEARGYQALLEMGLTQEEVARRVGKARSTVANALR 156 (230)
T ss_dssp TCCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 8988999999999988418999999880999999999998
No 70
>2cyy_A Putative HTH-type transcriptional regulator PH1519; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=94.63 E-value=0.091 Score=28.83 Aligned_cols=44 Identities=16% Similarity=0.277 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHHHHHCC--CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 88897799999999859--997999999499988999999999998
Q gi|254780694|r 184 FELTGREVECLTWISEG--KTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 184 ~~LT~RE~eVl~lia~G--~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
..|.+-.++++..+.+- .|+.+||+.+|+|+.||...++++..+
T Consensus 3 ~~lD~~D~~IL~~L~~d~R~s~~~iA~~lglS~~tv~~Ri~rL~~~ 48 (151)
T 2cyy_A 3 VPLDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRES 48 (151)
T ss_dssp CCCCHHHHHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 8772899999999998489999999999891999999999999845
No 71
>2pmu_A Response regulator PHOP; winged helix-TUN-HELX, transcription regulation; 1.78A {Mycobacterium tuberculosis H37RV}
Probab=94.57 E-value=0.047 Score=30.64 Aligned_cols=52 Identities=21% Similarity=0.240 Sum_probs=44.2
Q ss_pred CCCCCCCHHHHHHHHHHHCC----CCHHHHHHHHC-----CCHHHHHHHHHHHHHHHCCCC
Q ss_conf 98888897799999999859----99799999949-----998899999999999807998
Q gi|254780694|r 181 GKDFELTGREVECLTWISEG----KTSDEIAVILG-----ISRNTVNNYIASIMRKTATKT 232 (246)
Q Consensus 181 ~~~~~LT~RE~eVl~lia~G----~t~~eIA~~L~-----iS~~TV~~hl~~i~~KLgv~~ 232 (246)
+....||++|.++|.++++- .|-.+|.+.+. .+.+||+.|+.++.+||+..+
T Consensus 30 ~~~i~Lt~~E~~lL~~L~~~~g~vvsr~~L~~~vw~~~~~~~~~~l~~~I~rLRkkL~~~~ 90 (110)
T 2pmu_A 30 GQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGE 90 (110)
T ss_dssp TEEECCCHHHHHHHHHHHHTTTSCBCHHHHHHHHSCTTCCSSSCHHHHHHHHHHHHHCCSS
T ss_pred CEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 9997568999999999997799765799998512577778884889999999999737799
No 72
>2k4j_A Putative transcriptional regulator; response regulator, acid resistance, DNA-binding, phosphoprotein, transcription regulation; NMR {Helicobacter pylori J99}
Probab=94.53 E-value=0.045 Score=30.77 Aligned_cols=50 Identities=24% Similarity=0.333 Sum_probs=42.4
Q ss_pred CCCCCCHHHHHHHHHHHC--C--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHCCC
Q ss_conf 888889779999999985--9--9979999994-----999889999999999980799
Q gi|254780694|r 182 KDFELTGREVECLTWISE--G--KTSDEIAVIL-----GISRNTVNNYIASIMRKTATK 231 (246)
Q Consensus 182 ~~~~LT~RE~eVl~lia~--G--~t~~eIA~~L-----~iS~~TV~~hl~~i~~KLgv~ 231 (246)
....||++|.++|.++++ | .|-.+|...+ ..+.+||+.|++++.+||+..
T Consensus 38 ~~i~Lt~~E~~lL~~L~~~~g~vvsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkl~~~ 96 (115)
T 2k4j_A 38 KKLDLTRAEYEILSLLISKKGYVFSRESIAIESESINPESSNKSIDVIIGRLRSKIEKN 96 (115)
T ss_dssp EEECSCHHHHHHHHHHHHHCCCEECHHHHHHHTCCSSCTTCHHHHHHHHHHHHHHHHHS
T ss_pred EEEECCHHHHHHHHHHHHCCCEEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 99727999999999998579937869999999716786778320999999999985315
No 73
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=94.45 E-value=0.085 Score=29.00 Aligned_cols=34 Identities=15% Similarity=0.219 Sum_probs=20.0
Q ss_pred HHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9999985999799999949998899999999999
Q gi|254780694|r 193 CLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 (246)
Q Consensus 193 Vl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~ 226 (246)
|+.++.+|++..+||..++||..||..-++.-.+
T Consensus 41 IV~~~~~G~s~r~IArrf~VS~stV~kii~r~re 74 (149)
T 1k78_A 41 IVELAHQGVRPCDISRQLRVSHGCVSKILGRYYE 74 (149)
T ss_dssp HHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999996999999999889499999999999998
No 74
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=94.45 E-value=0.088 Score=28.90 Aligned_cols=43 Identities=9% Similarity=0.138 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 889779999999985--9997999999499988999999999998
Q gi|254780694|r 185 ELTGREVECLTWISE--GKTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 185 ~LT~RE~eVl~lia~--G~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
.|-+-.+++|..+.+ -.|+.|||+.+++|+.||..+++++..+
T Consensus 2 ~lD~~D~~Il~~L~~n~R~s~~eiA~~~g~s~~tv~~Ri~rL~~~ 46 (144)
T 2cfx_A 2 KLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESF 46 (144)
T ss_dssp CCCHHHHHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 868899999999998389999999999892989999999999858
No 75
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=94.42 E-value=0.072 Score=29.46 Aligned_cols=39 Identities=15% Similarity=0.323 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHCC-CCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 7799999999859-99799999949998899999999999
Q gi|254780694|r 188 GREVECLTWISEG-KTSDEIAVILGISRNTVNNYIASIMR 226 (246)
Q Consensus 188 ~RE~eVl~lia~G-~t~~eIA~~L~iS~~TV~~hl~~i~~ 226 (246)
|.=.+|+.++++| ++..||+..|++|..||-.|++.+..
T Consensus 46 p~Rl~Il~~L~~~~~~v~ela~~l~~s~stvS~HL~~L~~ 85 (122)
T 1r1t_A 46 PNRLRLLSLLARSELCVGDLAQAIGVSESAVSHQLRSLRN 85 (122)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999999999829976999999989198889999999998
No 76
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=94.36 E-value=0.1 Score=28.51 Aligned_cols=39 Identities=28% Similarity=0.298 Sum_probs=32.8
Q ss_pred CCCCHHHH--HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 88897799--9999998599979999994999889999999
Q gi|254780694|r 184 FELTGREV--ECLTWISEGKTSDEIAVILGISRNTVNNYIA 222 (246)
Q Consensus 184 ~~LT~RE~--eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~ 222 (246)
..|||-|. -+-+++.+|.|-++||..||.|..+|..|++
T Consensus 34 ~~l~~~e~A~~~~~l~~~g~t~~~iA~~lg~s~~~V~~~l~ 74 (178)
T 1r71_A 34 NELTPREIADFIGRELAKGKKKGDIAKEIGKSPAFITQHVT 74 (178)
T ss_dssp TCCCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHG
T ss_pred CCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 68999999999999998178899999996999999999999
No 77
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=94.29 E-value=0.097 Score=28.65 Aligned_cols=45 Identities=18% Similarity=0.220 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHHC-C-CCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf 889779999999985-9-997999999499988999999999998079
Q gi|254780694|r 185 ELTGREVECLTWISE-G-KTSDEIAVILGISRNTVNNYIASIMRKTAT 230 (246)
Q Consensus 185 ~LT~RE~eVl~lia~-G-~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv 230 (246)
.|.+-.++|+..+.+ | .|+.+||+.+++|+.||...++++. |-|+
T Consensus 4 ~lD~~D~~Il~~L~~n~R~s~~~ia~~~gls~~tv~~Ri~rL~-~~Gi 50 (150)
T 2w25_A 4 ALDDIDRILVRELAADGRATLSELATRAGLSVSAVQSRVRRLE-SRGV 50 (150)
T ss_dssp CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHH-HTTS
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH-HCCC
T ss_conf 5709999999999983899999999998929899999999998-6898
No 78
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=94.29 E-value=0.043 Score=30.91 Aligned_cols=46 Identities=22% Similarity=0.308 Sum_probs=38.3
Q ss_pred CCCCCCHHHHHHHHHHHC----CC---CHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 888889779999999985----99---97999999499988999999999998
Q gi|254780694|r 182 KDFELTGREVECLTWISE----GK---TSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 182 ~~~~LT~RE~eVl~lia~----G~---t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
...+||+.|.-|+-.+.. |. |...||..+++|++||..+++++..|
T Consensus 26 ~~lgLs~~e~~vll~l~~~~~~~~~~PS~~~La~~~g~s~~~v~~~l~~L~~~ 78 (128)
T 2vn2_A 26 KQLGLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRLLQK 78 (128)
T ss_dssp TTTTCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHHHT
T ss_pred HHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 88398999999999999998759999999999989594999999999999988
No 79
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=94.23 E-value=0.089 Score=28.88 Aligned_cols=46 Identities=28% Similarity=0.297 Sum_probs=37.8
Q ss_pred CCCCCCHHHHHHHHHH------HCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 8888897799999999------859997999999499988999999999998
Q gi|254780694|r 182 KDFELTGREVECLTWI------SEGKTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 182 ~~~~LT~RE~eVl~li------a~G~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
....||.+|.+.|.-| ..+-+..+||..|++|+.||..-++++-.|
T Consensus 7 ~m~~ls~~ee~YL~aI~~l~~~~~~v~~~~iA~~L~vs~~svt~~l~~L~~~ 58 (139)
T 2x4h_A 7 QMSNLSRREFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEEK 58 (139)
T ss_dssp ----CCHHHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHC
T ss_conf 2303788999999999999975998669999999688907999999999988
No 80
>2v79_A DNA replication protein DNAD; primosome, DNA remodelling, oligomerization domain, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=94.20 E-value=0.036 Score=31.42 Aligned_cols=44 Identities=23% Similarity=0.274 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHHHHHC----C---CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 8889779999999985----9---997999999499988999999999998
Q gi|254780694|r 184 FELTGREVECLTWISE----G---KTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 184 ~~LT~RE~eVl~lia~----G---~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
.+||+.|.-|+-.+.. | -|...||..+++|++||..+++++..|
T Consensus 28 lgLs~~e~~vll~l~~~~~~g~~fPS~~~La~~~g~s~~~v~~~l~~L~~k 78 (135)
T 2v79_A 28 LGLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQK 78 (135)
T ss_dssp HTCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 399989999999999988769979899999989594999999999999988
No 81
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=94.20 E-value=0.062 Score=29.87 Aligned_cols=43 Identities=19% Similarity=0.387 Sum_probs=37.2
Q ss_pred CCCCHHH-HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 8889779-999999985999799999949998899999999999
Q gi|254780694|r 184 FELTGRE-VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 (246)
Q Consensus 184 ~~LT~RE-~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~ 226 (246)
-.+|+-| .+|++++-.|+|..+||+.++|++.|+..-+++--.
T Consensus 21 r~~t~e~K~~iv~~~e~G~s~~~vAre~gi~~stl~~W~k~~~~ 64 (87)
T 2elh_A 21 RSLTPRDKIHAIQRIHDGESKASVARDIGVPESTLRGWCKNEDK 64 (87)
T ss_dssp SSCCHHHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 71899999999999987999999999979799899999999999
No 82
>3cuo_A Uncharacterized HTH-type transcriptional regulator YGAV; DNA-binding transcriptional regulator, structural genomics, PSI, MCSG; 2.00A {Escherichia coli K12}
Probab=94.18 E-value=0.079 Score=29.21 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHCC--CCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 7799999999859--99799999949998899999999999
Q gi|254780694|r 188 GREVECLTWISEG--KTSDEIAVILGISRNTVNNYIASIMR 226 (246)
Q Consensus 188 ~RE~eVl~lia~G--~t~~eIA~~L~iS~~TV~~hl~~i~~ 226 (246)
|.=.+|+.++++| ++..||++.|++|..||-.|++.+..
T Consensus 24 p~Rl~Il~~L~~~~~~~v~eLa~~l~~s~stvS~HL~~L~~ 64 (99)
T 3cuo_A 24 PKRLLILCMLSGSPGTSAGELTRITGLSASATSQHLARMRD 64 (99)
T ss_dssp HHHHHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999985899907999774558598799999999998
No 83
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=94.18 E-value=0.084 Score=29.03 Aligned_cols=45 Identities=16% Similarity=0.059 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHHHHH---CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 8888977999999998---59997999999499988999999999998
Q gi|254780694|r 183 DFELTGREVECLTWIS---EGKTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 183 ~~~LT~RE~eVl~lia---~G~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
..+||+.+..|+.++. +++|-.|||+.+++|..||...++.+-.|
T Consensus 21 ~~Gl~~~~~~il~~L~~~~~p~t~~eLa~~l~is~s~vs~~l~~L~~~ 68 (152)
T 1ku9_A 21 IHGLNKSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEEL 68 (152)
T ss_dssp HTTCCHHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 829899999999999976989299999999896885799999999988
No 84
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=94.17 E-value=0.11 Score=28.28 Aligned_cols=46 Identities=22% Similarity=0.280 Sum_probs=40.7
Q ss_pred CCCCCCHHHHHHHHHHHC---CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 888889779999999985---9997999999499988999999999998
Q gi|254780694|r 182 KDFELTGREVECLTWISE---GKTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 182 ~~~~LT~RE~eVl~lia~---G~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
..++||..+..||..+.+ |.|..+||+.++++..||...++++-+|
T Consensus 47 ~~~gLt~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~stvsr~v~~L~~~ 95 (166)
T 3deu_A 47 KPLELTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDK 95 (166)
T ss_dssp TTTTCCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 8769899999999999976989799999999798998999999999858
No 85
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genomics, protein structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=94.14 E-value=0.1 Score=28.45 Aligned_cols=40 Identities=15% Similarity=0.172 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 779999999985--9997999999499988999999999998
Q gi|254780694|r 188 GREVECLTWISE--GKTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 188 ~RE~eVl~lia~--G~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
+--++||+.+.+ -.|+.+||+.+|+|+.||+..++++..+
T Consensus 3 ~~D~~IL~~L~~d~R~s~~eiA~~lglS~~tv~~Ri~rL~~~ 44 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEED 44 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 799999999998489999999999892999999999999847
No 86
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=94.12 E-value=0.095 Score=28.68 Aligned_cols=39 Identities=13% Similarity=0.207 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHCC-CCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 7799999999859-99799999949998899999999999
Q gi|254780694|r 188 GREVECLTWISEG-KTSDEIAVILGISRNTVNNYIASIMR 226 (246)
Q Consensus 188 ~RE~eVl~lia~G-~t~~eIA~~L~iS~~TV~~hl~~i~~ 226 (246)
|.=.+|+.++++| ++..||+..|++|..||..|++....
T Consensus 26 p~Rl~Il~~L~~~~~~v~el~~~l~~s~s~vS~HL~~L~~ 65 (106)
T 1r1u_A 26 YNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKS 65 (106)
T ss_dssp HHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999999999829967999999876586589999999998
No 87
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=94.06 E-value=0.046 Score=30.72 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHCC-CCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 7799999999859-99799999949998899999999999
Q gi|254780694|r 188 GREVECLTWISEG-KTSDEIAVILGISRNTVNNYIASIMR 226 (246)
Q Consensus 188 ~RE~eVl~lia~G-~t~~eIA~~L~iS~~TV~~hl~~i~~ 226 (246)
|.=++|+.++++| +|..+||..+++|..||..|++.+..
T Consensus 18 p~R~~Il~~L~~~~~~v~ela~~l~~s~~tvS~HL~~L~~ 57 (118)
T 3f6o_A 18 PTRRAVLGRLSRGPATVSELAKPFDMALPSFMKHIHFLED 57 (118)
T ss_dssp HHHHHHHHHHHTCCEEHHHHHTTCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999999999809947999999989199999999999998
No 88
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=94.02 E-value=0.15 Score=27.39 Aligned_cols=46 Identities=24% Similarity=0.309 Sum_probs=41.3
Q ss_pred CCCCCCHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 888889779999999985--9997999999499988999999999998
Q gi|254780694|r 182 KDFELTGREVECLTWISE--GKTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 182 ~~~~LT~RE~eVl~lia~--G~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
..++||+.|..||..+.+ |.|-.+||..++++..||...+++.-+|
T Consensus 31 ~~~glt~~q~~iL~~l~~~~~~t~~~La~~l~i~~~~vs~~i~~L~~~ 78 (143)
T 3oop_A 31 ASYDVTPEQWSVLEGIEANEPISQKEIALWTKKDTPTVNRIVDVLLRK 78 (143)
T ss_dssp TTSSSCHHHHHHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 866999999999999986899799999999896997999999999756
No 89
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=93.97 E-value=0.16 Score=27.17 Aligned_cols=51 Identities=18% Similarity=0.138 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHHHC------CCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 88889779999999985------99979999994999889999999999980799889999
Q gi|254780694|r 183 DFELTGREVECLTWISE------GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 (246)
Q Consensus 183 ~~~LT~RE~eVl~lia~------G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav 237 (246)
...||+.|+.|++++-+ -+|-.++|+..++|+.||- +..+|||-.+=.+.-
T Consensus 16 ~~~Lt~~E~~Ia~yil~n~~~v~~~si~elA~~~~vS~aTI~----Rf~kklGf~gf~efk 72 (111)
T 2o3f_A 16 XHXLPPSERKLADYILAHPHXAIESTVNEISALANSSDAAVI----RLCXSLGLKGFQDLX 72 (111)
T ss_dssp GGGSCHHHHHHHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHH----HHHHHTTCSSHHHHH
T ss_pred HCCCCHHHHHHHHHHHHCHHHHHHCCHHHHHHHHCCCHHHHH----HHHHHHCCCCHHHHH
T ss_conf 341799999999999959247643789999989798987999----999992779899999
No 90
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, PSI, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=93.93 E-value=0.11 Score=28.32 Aligned_cols=46 Identities=15% Similarity=0.262 Sum_probs=38.8
Q ss_pred CCCCCCHHHHHHHHHHH---CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 88888977999999998---59997999999499988999999999998
Q gi|254780694|r 182 KDFELTGREVECLTWIS---EGKTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 182 ~~~~LT~RE~eVl~lia---~G~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
...+||+.+..||..+. +|.|..+|+..++++..||...+++.-+|
T Consensus 31 ~~~glt~~q~~iL~~l~~~~~~~t~~eL~~~~~~~~~~vs~~i~~L~~~ 79 (146)
T 2fbh_A 31 SHLGLSQARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLESQ 79 (146)
T ss_dssp GGGCCTTTHHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 8859899999999999867999999999999896898999999999639
No 91
>2z9m_A Response regulator YYCF; two-component system, YYCG, helix-turn- helix motif, DNA-binding domain, phosphorylation, transcription; 1.87A {Staphylococcus aureus} PDB: 2zxj_A 2d1v_A
Probab=93.92 E-value=0.09 Score=28.86 Aligned_cols=51 Identities=29% Similarity=0.404 Sum_probs=42.6
Q ss_pred CCCCCCCHHHHHHHHHHHC--CC--CHHHHHHHHC-----CCHHHHHHHHHHHHHHHCCC
Q ss_conf 9888889779999999985--99--9799999949-----99889999999999980799
Q gi|254780694|r 181 GKDFELTGREVECLTWISE--GK--TSDEIAVILG-----ISRNTVNNYIASIMRKTATK 231 (246)
Q Consensus 181 ~~~~~LT~RE~eVl~lia~--G~--t~~eIA~~L~-----iS~~TV~~hl~~i~~KLgv~ 231 (246)
+....||++|..+|.++++ |. |-.+|...+. .+.+|++.|+.++.+||+..
T Consensus 32 g~~i~Lt~~E~~lL~~L~~~~g~vvsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~~ 91 (120)
T 2z9m_A 32 GEDIELTHREFELFHYLSKHMGQVMTREHLLQTVWGYDYFGDVRTVDVTIRRLREKIEDD 91 (120)
T ss_dssp TEEECCCHHHHHHHHHHHTTTTCCEEHHHHHHHHHCTTCCSCTHHHHHHHHHHHHHHCSS
T ss_pred CEEEECCHHHHHHHHHHHHCCCCEEEHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHHHC
T ss_conf 999976999999999999789963756896665037777898877035899999997507
No 92
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=93.88 E-value=0.062 Score=29.88 Aligned_cols=40 Identities=18% Similarity=0.297 Sum_probs=33.2
Q ss_pred CHHHHHHHHHHHCC-CCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 97799999999859-99799999949998899999999999
Q gi|254780694|r 187 TGREVECLTWISEG-KTSDEIAVILGISRNTVNNYIASIMR 226 (246)
Q Consensus 187 T~RE~eVl~lia~G-~t~~eIA~~L~iS~~TV~~hl~~i~~ 226 (246)
.|.=.+|+.++.+| ++..||+..|++|..||-.|++....
T Consensus 22 ~p~Rl~Il~~L~~~~~~v~ela~~l~~s~~tvS~HL~~L~~ 62 (98)
T 3jth_A 22 NERRLQILCMLHNQELSVGELCAKLQLSQSALSQHLAWLRR 62 (98)
T ss_dssp SHHHHHHHHHTTTSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999999729937999999988595678899999998
No 93
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=93.86 E-value=0.25 Score=25.96 Aligned_cols=51 Identities=18% Similarity=0.322 Sum_probs=42.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 46779888889779999999985--9997999999499988999999999998
Q gi|254780694|r 177 DVHWGKDFELTGREVECLTWISE--GKTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 177 ~~~~~~~~~LT~RE~eVl~lia~--G~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
.......++||+.|..||..+++ |.|..+||+.++++..||..-++.+-+|
T Consensus 29 ~~~~~~~~glt~~q~~vL~~L~~~~~~t~~~la~~l~i~~~~vsr~l~~L~~~ 81 (148)
T 3nrv_A 29 STAYTQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
T ss_dssp ---CCGGGTCCHHHHHHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCC
T ss_conf 99999884989999999999997799799999999896998999999998507
No 94
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=93.85 E-value=0.13 Score=27.72 Aligned_cols=46 Identities=15% Similarity=0.156 Sum_probs=40.0
Q ss_pred CCCCCCHHHHHHHHHHH--CC-CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 88888977999999998--59-997999999499988999999999998
Q gi|254780694|r 182 KDFELTGREVECLTWIS--EG-KTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 182 ~~~~LT~RE~eVl~lia--~G-~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
...+||..+..||..+. .| .|..+||+.++++..||...++++-+|
T Consensus 29 ~~~~ls~~q~~vL~~i~~~~g~~t~~ela~~~~~~~~tvs~~l~~L~~~ 77 (147)
T 2hr3_A 29 QADPVQFSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERG 77 (147)
T ss_dssp CCCHHHHHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 4659899999999999976999899999999897987999999999867
No 95
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=93.69 E-value=0.12 Score=28.03 Aligned_cols=44 Identities=18% Similarity=0.122 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 77999999998599979999994999889999999999980799
Q gi|254780694|r 188 GREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 (246)
Q Consensus 188 ~RE~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~ 231 (246)
+|..|++.-+++=.|-..-|+.|++|..+|-.+++++=..||++
T Consensus 22 ~r~l~~~~av~~~gS~t~AA~~L~iSq~avS~~I~~LE~~lG~~ 65 (265)
T 1b9m_A 22 PRRISLLKHIALSGSISQGAKDAGISYKSAWDAINEMNQLSEHI 65 (265)
T ss_dssp HHHHHHHHHHHHHSSHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf 79999999999979999999997989999999999998762996
No 96
>2nyx_A Probable transcriptional regulatory protein, RV1404; alpha/beta, structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium tuberculosis H37RV}
Probab=93.68 E-value=0.12 Score=28.15 Aligned_cols=44 Identities=14% Similarity=0.213 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 888977999999998--59997999999499988999999999998
Q gi|254780694|r 184 FELTGREVECLTWIS--EGKTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 184 ~~LT~RE~eVl~lia--~G~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
.+||..|..||..+. .|.+..+||+.++++..||...++....|
T Consensus 41 ~~LT~~q~~vL~~l~~~~~~~~~eLa~~l~i~~~~vs~~l~~Le~~ 86 (168)
T 2nyx_A 41 ENITIPQFRTLVILSNHGPINLATLATLLGVQPSATGRMVDRLVGA 86 (168)
T ss_dssp SSCCHHHHHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCC
T ss_conf 9989999999999996799699999999896988999999998164
No 97
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=93.59 E-value=0.077 Score=29.28 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHHHC--CCCHHHHHHHHCC--CHHHHHHHHHHHHHH
Q ss_conf 89779999999985--9997999999499--988999999999998
Q gi|254780694|r 186 LTGREVECLTWISE--GKTSDEIAVILGI--SRNTVNNYIASIMRK 227 (246)
Q Consensus 186 LT~RE~eVl~lia~--G~t~~eIA~~L~i--S~~TV~~hl~~i~~K 227 (246)
.++....||..+.+ ..|.++||..++| |+.+|..|++.+..+
T Consensus 11 M~~~D~rILE~L~e~g~~t~~eIA~~lgi~~S~~~Vs~rl~~L~~~ 56 (111)
T 3b73_A 11 MTIWDDRILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLADH 56 (111)
T ss_dssp CCHHHHHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHC
T ss_conf 4601999999999849999999999868884799999999999878
No 98
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=93.58 E-value=0.13 Score=27.72 Aligned_cols=19 Identities=11% Similarity=0.083 Sum_probs=8.6
Q ss_pred CHHHHHHHHHHHHHHHCCCE
Q ss_conf 99999999999998719302
Q gi|254780694|r 41 CTVSWTMRMYALTEYVGASH 60 (246)
Q Consensus 41 ~~~~~~~~~~~~~~~~g~~~ 60 (246)
+...+...+..+ +..|+..
T Consensus 32 SR~aVwk~i~~L-~~~G~~I 50 (321)
T 1bia_A 32 SRAAINKHIQTL-RDWGVDV 50 (321)
T ss_dssp CHHHHHHHHHHH-HHTTCCC
T ss_pred CHHHHHHHHHHH-HHCCCCE
T ss_conf 999999999999-9779729
No 99
>1opc_A OMPR, OMPRC; transcription regulation, response regulator, winged helix, osmoregulation; 1.95A {Escherichia coli} SCOP: a.4.6.1 PDB: 1odd_A 2jpb_A
Probab=93.54 E-value=0.073 Score=29.44 Aligned_cols=52 Identities=13% Similarity=0.189 Sum_probs=43.6
Q ss_pred CCCCCCCHHHHHHHHHHHCC----CCHHHHHHHHC-----CCHHHHHHHHHHHHHHHCCCC
Q ss_conf 98888897799999999859----99799999949-----998899999999999807998
Q gi|254780694|r 181 GKDFELTGREVECLTWISEG----KTSDEIAVILG-----ISRNTVNNYIASIMRKTATKT 232 (246)
Q Consensus 181 ~~~~~LT~RE~eVl~lia~G----~t~~eIA~~L~-----iS~~TV~~hl~~i~~KLgv~~ 232 (246)
+....||++|.++|.++++- .|..+|...+. .+.+||+.|+.++.+||+-..
T Consensus 27 ~~~i~Lt~~E~~lL~~L~~~~g~vvsr~~L~~~vw~~~~~~~~~~i~~~I~rLRkkl~~~~ 87 (110)
T 1opc_A 27 DEPMPLTSGEFAVLKALVSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDP 87 (110)
T ss_dssp TEEECCCHHHHHHHHHHHHSTTCCEEHHHHHHHHCCSSSCTTSSCHHHHHHHHHHHHCSCT
T ss_pred CEEEECCHHHHHHHHHHHHCCCEEECHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 9999759999999999986477764199998784386557674789999999999875368
No 100
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=93.51 E-value=0.18 Score=26.97 Aligned_cols=46 Identities=17% Similarity=0.186 Sum_probs=39.7
Q ss_pred CCCCCCHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 888889779999999985--9997999999499988999999999998
Q gi|254780694|r 182 KDFELTGREVECLTWISE--GKTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 182 ~~~~LT~RE~eVl~lia~--G~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
..++||+.|..||..+.+ |.|..+||+.++++..||...+++.-+|
T Consensus 41 ~~~gLt~~q~~vL~~l~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~ 88 (153)
T 2pex_A 41 KALDLTYPQYLVMLVLWETDERSVSEIGERLYLDSATLTPLLKRLQAA 88 (153)
T ss_dssp TTTTCCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 776979999999999984799899999999896886899999999988
No 101
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=93.50 E-value=0.048 Score=30.58 Aligned_cols=40 Identities=13% Similarity=0.261 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHHCC-CCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 97799999999859-99799999949998899999999999
Q gi|254780694|r 187 TGREVECLTWISEG-KTSDEIAVILGISRNTVNNYIASIMR 226 (246)
Q Consensus 187 T~RE~eVl~lia~G-~t~~eIA~~L~iS~~TV~~hl~~i~~ 226 (246)
-|.=++|+.++++| +|..|||+.|++|..||..|++.+..
T Consensus 57 dPtRl~IL~~L~~g~~tv~eLa~~l~is~stvS~HL~~L~~ 97 (151)
T 3f6v_A 57 EPTRRRLVQLLTSGEQTVNNLAAHFPASRSAISQHLRVLTE 97 (151)
T ss_dssp SHHHHHHHHHGGGCCEEHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999999809938999999989199999999998998
No 102
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=93.48 E-value=0.054 Score=30.28 Aligned_cols=35 Identities=14% Similarity=0.218 Sum_probs=25.0
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99999985999799999949998899999999999
Q gi|254780694|r 192 ECLTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 (246)
Q Consensus 192 eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~ 226 (246)
.|+.++.+|.+..+||..|+||..||..-+++...
T Consensus 33 rIv~l~~~G~s~r~IArrl~VS~stV~kil~R~re 67 (159)
T 2k27_A 33 RIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYE 67 (159)
T ss_dssp HHHHHHHHTCCHHHHHHHHTCCSHHHHHHHCCSST
T ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999986999999999889599999999999986
No 103
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=93.44 E-value=0.16 Score=27.17 Aligned_cols=44 Identities=14% Similarity=0.175 Sum_probs=32.4
Q ss_pred CCHHH-HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 89779-999999985999799999949998899999999999807
Q gi|254780694|r 186 LTGRE-VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 186 LT~RE-~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
|+.-. ..|+.+...|.+..+||..|++|..||...+++-+..=.
T Consensus 18 Ls~~~R~rIv~l~~~G~s~~~Iar~l~Vs~~~V~kil~r~~etG~ 62 (128)
T 1pdn_C 18 LPNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQETGS 62 (128)
T ss_dssp CCHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf 989999999999986999999999889689999999999873598
No 104
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, structural genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=93.43 E-value=0.22 Score=26.39 Aligned_cols=47 Identities=21% Similarity=0.174 Sum_probs=41.4
Q ss_pred CCCCCCCHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 9888889779999999985--9997999999499988999999999998
Q gi|254780694|r 181 GKDFELTGREVECLTWISE--GKTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 181 ~~~~~LT~RE~eVl~lia~--G~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
-..++||..|..||..+.+ |.|..+||..++++..||...++++-.|
T Consensus 41 lk~~gLt~~q~~iL~~L~~~~~~s~~ela~~~~~~~stvs~~i~~Le~~ 89 (207)
T 2fxa_A 41 LKPYDLNINEHHILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLEER 89 (207)
T ss_dssp TGGGTCCHHHHHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 2547999999999999997699499999999886987999999999968
No 105
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=93.34 E-value=0.11 Score=28.41 Aligned_cols=45 Identities=16% Similarity=0.139 Sum_probs=40.1
Q ss_pred CCCCCHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 88889779999999985--9997999999499988999999999998
Q gi|254780694|r 183 DFELTGREVECLTWISE--GKTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 183 ~~~LT~RE~eVl~lia~--G~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
..+||+.|..||..+.+ |.|..+||..+++|..||...+++..+|
T Consensus 32 ~~glt~~q~~vL~~l~~~~~~t~~ela~~~~~~~~~vs~~l~~L~~~ 78 (155)
T 1s3j_A 32 KQGVTPAQLFVLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLEQK 78 (155)
T ss_dssp HTTCCHHHHHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 85989999999999998699799999999896998999999999862
No 106
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, structural genomics; NMR {Mycobacterium tuberculosis H37RV}
Probab=93.31 E-value=0.091 Score=28.80 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHCC-CCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 7799999999859-99799999949998899999999999
Q gi|254780694|r 188 GREVECLTWISEG-KTSDEIAVILGISRNTVNNYIASIMR 226 (246)
Q Consensus 188 ~RE~eVl~lia~G-~t~~eIA~~L~iS~~TV~~hl~~i~~ 226 (246)
|.-++|+.++.+| ++..+|+..|++|..||..|++.+..
T Consensus 21 ptRl~Il~~L~~~~~~v~ela~~lgis~stvS~HL~~L~~ 60 (118)
T 2jsc_A 21 PTRCRILVALLDGVCYPGQLAAHLGLTRSNVSNHLSCLRG 60 (118)
T ss_dssp HHHHHHHHHHHTTCCSTTTHHHHHSSCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999999999819928999999989299999999999998
No 107
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa}
Probab=93.24 E-value=0.32 Score=25.30 Aligned_cols=44 Identities=9% Similarity=0.185 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 888977999999998--59997999999499988999999999998
Q gi|254780694|r 184 FELTGREVECLTWIS--EGKTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 184 ~~LT~RE~eVl~lia--~G~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
.+||+.|..||..+. .|.|..+||+.++++..||...+++.-+|
T Consensus 34 ~glt~~q~~vL~~l~~~~~~t~~eLa~~~~~~~~~vs~~i~~L~~~ 79 (140)
T 2nnn_A 34 NGLTPTQWAALVRLGETGPCPQNQLGRLTAMDAATIKGVVERLDKR 79 (140)
T ss_dssp SCCCHHHHHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHC
T ss_conf 8989999999999998799099999998785735299999999738
No 108
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=93.23 E-value=0.049 Score=30.53 Aligned_cols=45 Identities=22% Similarity=0.285 Sum_probs=40.1
Q ss_pred CCCCCHHHHHHHHHHH-----CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 8888977999999998-----59997999999499988999999999998
Q gi|254780694|r 183 DFELTGREVECLTWIS-----EGKTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 183 ~~~LT~RE~eVl~lia-----~G~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
.++||+.|..||..+. .|+|..+||+.+++|..||...+++..+|
T Consensus 64 ~~GLt~~q~~vL~~L~~~~~~~~lt~~eLa~~l~~s~~~vs~~l~~Le~~ 113 (181)
T 2fbk_A 64 ASGLNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEK 113 (181)
T ss_dssp TTTCCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 86979999999999985099999099999999787875799999999987
No 109
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=93.01 E-value=0.25 Score=25.94 Aligned_cols=46 Identities=22% Similarity=0.409 Sum_probs=40.0
Q ss_pred CCCCCCHHHHHHHHHHHCC--CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 8888897799999999859--997999999499988999999999998
Q gi|254780694|r 182 KDFELTGREVECLTWISEG--KTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 182 ~~~~LT~RE~eVl~lia~G--~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
...+||+.|..||..+.+. .|..+||..+++|..||...++..-.|
T Consensus 23 ~~~~lt~~q~~vL~~i~~~~~~t~~eLa~~~~~~~~~vs~~v~~L~~~ 70 (138)
T 3bpv_A 23 GHLNLTDAQVACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLEES 70 (138)
T ss_dssp GGGTCCHHHHHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 657989999999999985899799999999897987999999999968
No 110
>1qbj_A Protein (double-stranded RNA specific adenosine deaminase (ADAR1)); protein/Z-DNA complex, hydrolase/DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A
Probab=92.95 E-value=0.18 Score=26.97 Aligned_cols=45 Identities=18% Similarity=0.372 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHH-----CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 977999999998-----599979999994999889999999999980799
Q gi|254780694|r 187 TGREVECLTWIS-----EGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 (246)
Q Consensus 187 T~RE~eVl~lia-----~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~ 231 (246)
.+.|..||+.+- .+.|..+||..|+++.++|+.+|-++.++-.|.
T Consensus 9 ~d~e~~Il~~L~~~g~g~~~tA~~LAk~lg~~Kk~vN~~LY~L~k~g~v~ 58 (81)
T 1qbj_A 9 QDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQ 58 (81)
T ss_dssp HHHHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
T ss_conf 37999999999973799752199999996988889899999999879864
No 111
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=92.95 E-value=0.11 Score=28.22 Aligned_cols=31 Identities=32% Similarity=0.438 Sum_probs=27.3
Q ss_pred HHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9999985999799999949998899999999
Q gi|254780694|r 193 CLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 (246)
Q Consensus 193 Vl~lia~G~t~~eIA~~L~iS~~TV~~hl~~ 223 (246)
+-+|.++|.|..+||..|++|.+-|+.|+.+
T Consensus 24 ~hELa~~gysvqqIa~~LGVsvrKv~~YLEs 54 (55)
T 2x48_A 24 AHELAKMGYTVQQIANALGVSERKVRRYLES 54 (55)
T ss_dssp HHHHHHTTCCHHHHHHHHTSCHHHHHHHHTC
T ss_pred HHHHHHCCCCHHHHHHHHCHHHHHHHHHHHC
T ss_conf 9999984872999998846119999998745
No 112
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=92.92 E-value=0.21 Score=26.51 Aligned_cols=41 Identities=15% Similarity=0.098 Sum_probs=27.8
Q ss_pred CCCCCCHHHHH--HHHHHHC--CCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 88888977999--9999985--99979999994999889999999
Q gi|254780694|r 182 KDFELTGREVE--CLTWISE--GKTSDEIAVILGISRNTVNNYIA 222 (246)
Q Consensus 182 ~~~~LT~RE~e--Vl~lia~--G~t~~eIA~~L~iS~~TV~~hl~ 222 (246)
..-.||+-|+- +.+++.+ |+|-.+||..+|+|..+|.++++
T Consensus 20 ~~r~lS~~E~a~~y~rlL~~~~~~tq~eLA~~lG~Srs~VS~~L~ 64 (189)
T 3mky_B 20 HYRPTSAYERGQRYASRLQNEFAGNISALADAENISRKIITRCIN 64 (189)
T ss_dssp ---CCCHHHHHHHHHHHHHTTTTTCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 889899999999999999864388899999997979999999998
No 113
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=92.86 E-value=0.11 Score=28.18 Aligned_cols=35 Identities=17% Similarity=0.405 Sum_probs=30.7
Q ss_pred HHHHHHHHCC-CCHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 9999999859-9979999994999889999999999
Q gi|254780694|r 191 VECLTWISEG-KTSDEIAVILGISRNTVNNYIASIM 225 (246)
Q Consensus 191 ~eVl~lia~G-~t~~eIA~~L~iS~~TV~~hl~~i~ 225 (246)
.+|+.++++| ++..||+..+++|..||..|++.+.
T Consensus 28 l~Il~~L~~~~~~v~eLa~~l~is~s~vS~HL~~L~ 63 (108)
T 2kko_A 28 LQILDLLAQGERAVEAIATATGMNLTTASANLQALK 63 (108)
T ss_dssp HHHHHHHTTCCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 999999980995799999998909888999999999
No 114
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding protein; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=92.85 E-value=0.12 Score=28.13 Aligned_cols=47 Identities=23% Similarity=0.408 Sum_probs=39.8
Q ss_pred CCCCCCHHHHHHHHHH--HCCCCHHHHHHHH----CCCHHHHHHHHHHHHHHH
Q ss_conf 8888897799999999--8599979999994----999889999999999980
Q gi|254780694|r 182 KDFELTGREVECLTWI--SEGKTSDEIAVIL----GISRNTVNNYIASIMRKT 228 (246)
Q Consensus 182 ~~~~LT~RE~eVl~li--a~G~t~~eIA~~L----~iS~~TV~~hl~~i~~KL 228 (246)
....||+.|.+|+..+ -.+.|.++|...| +++..||.+-++++..|=
T Consensus 4 k~~~Lt~~E~~VM~~lW~~~~~t~~ei~~~l~~~~~~~~~Tv~t~L~RL~~Kg 56 (126)
T 1sd4_A 4 KQVEISMAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKE 56 (126)
T ss_dssp -CCCCCHHHHHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 67998999999999998689977999999853346885606999999999789
No 115
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structural genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=92.77 E-value=0.33 Score=25.25 Aligned_cols=22 Identities=18% Similarity=0.132 Sum_probs=14.7
Q ss_pred CCCCCHHHHHHHHHHHCCCCHH
Q ss_conf 8888977999999998599979
Q gi|254780694|r 183 DFELTGREVECLTWISEGKTSD 204 (246)
Q Consensus 183 ~~~LT~RE~eVl~lia~G~t~~ 204 (246)
.-.+++..+..+.++.+=..+.
T Consensus 275 ~~~~~~~~~~f~d~l~e~l~~~ 296 (306)
T 3hhg_A 275 DKAVNLRLRVFLDFLVEELGNN 296 (306)
T ss_dssp GGGGCHHHHHHHHHHHHHCC--
T ss_pred CCCCCHHHHHHHHHHHHHHCCC
T ss_conf 9878999999999999985711
No 116
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=92.76 E-value=0.28 Score=25.70 Aligned_cols=45 Identities=16% Similarity=0.249 Sum_probs=39.4
Q ss_pred CCCCCHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 88889779999999985--9997999999499988999999999998
Q gi|254780694|r 183 DFELTGREVECLTWISE--GKTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 183 ~~~LT~RE~eVl~lia~--G~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
..+||+-|..||..+.. |.|..+||..+++|..||...+++.-+|
T Consensus 29 ~~~lt~~q~~vL~~l~~~~~~t~~ela~~~~~~~~~vs~~l~~L~~~ 75 (138)
T 1jgs_A 29 PLDITAAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCK 75 (138)
T ss_dssp TTTSCHHHHHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 85969999999999987799899999999897887999999999868
No 117
>3onq_A Regulator of polyketide synthase expression; structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Bifidobacterium adolescentis}
Probab=92.72 E-value=0.24 Score=26.08 Aligned_cols=43 Identities=19% Similarity=0.198 Sum_probs=38.8
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999985999799999949998899999999999807998
Q gi|254780694|r 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 (246)
Q Consensus 190 E~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~ 232 (246)
-.-+-.|+..|.+.++.|+.|+|-+|||++-+++|-+.+|..=
T Consensus 199 l~TL~ayl~~~~s~~~tA~~L~vHrNTlrYRL~Ri~eltG~dl 241 (262)
T 3onq_A 199 YLTVSTFLKYGSSLENTAKELNVHPNTVRYRLKRAAETTGWDA 241 (262)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHTSCHHHHHHHHHHHHHHHSCCT
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 9999999984999999999849788899999999999978097
No 118
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR), structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=92.69 E-value=0.15 Score=27.50 Aligned_cols=45 Identities=13% Similarity=0.211 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 88889779999999985--9997999999499988999999999998
Q gi|254780694|r 183 DFELTGREVECLTWISE--GKTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 183 ~~~LT~RE~eVl~lia~--G~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
..+||+.|..||..+.+ |.|..+||..+++|..||...++++-.|
T Consensus 36 ~~glt~~q~~vL~~L~~~~~~t~~~La~~l~~~~~tvs~~v~~L~~~ 82 (154)
T 2qww_A 36 SLGLTIQQLAMINVIYSTPGISVADLTKRLIITGSSAAANVDGLISL 82 (154)
T ss_dssp HHTCCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 76989999999999997799899999999797875799999999978
No 119
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=92.69 E-value=0.18 Score=26.87 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=39.4
Q ss_pred CCCCCHHHHHHHHHHHC--CCCHHHHHHHH----CCCHHHHHHHHHHHHHHHC
Q ss_conf 88889779999999985--99979999994----9998899999999999807
Q gi|254780694|r 183 DFELTGREVECLTWISE--GKTSDEIAVIL----GISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 183 ~~~LT~RE~eVl~lia~--G~t~~eIA~~L----~iS~~TV~~hl~~i~~KLg 229 (246)
...||+.|.+|++.+=+ ..|.+||...| +.+..||.+.++++..|==
T Consensus 4 ~~~Lt~~E~~VM~~lW~~~~~t~~ei~~~l~~~~~~~~sTv~T~L~RL~~Kg~ 56 (82)
T 1p6r_A 4 IPQISDAELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGA 56 (82)
T ss_dssp CCCCCHHHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 89999999999999981799789999998602369728579999999998898
No 120
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structural genomics, protein structure initiative; HET: GOL; 2.00A {Rhodococcus jostii RHA1}
Probab=92.66 E-value=0.2 Score=26.63 Aligned_cols=45 Identities=16% Similarity=0.279 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHHHHHH---CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 8888977999999998---59997999999499988999999999998
Q gi|254780694|r 183 DFELTGREVECLTWIS---EGKTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 183 ~~~LT~RE~eVl~lia---~G~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
..+||+.+..||..+. .|.|..+||..++++..||...+++.-+|
T Consensus 34 ~~gls~~q~~iL~~l~~~~~~~t~~ela~~l~~~~~~vsr~v~~L~~~ 81 (150)
T 3fm5_A 34 PTGLRVRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEER 81 (150)
T ss_dssp GGTCCHHHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTT
T ss_pred HCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 849799999999999985989899999999788787788999989764
No 121
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=92.66 E-value=0.22 Score=26.38 Aligned_cols=44 Identities=14% Similarity=0.307 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 8889779999999985--9997999999499988999999999998
Q gi|254780694|r 184 FELTGREVECLTWISE--GKTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 184 ~~LT~RE~eVl~lia~--G~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
++||+.+..||..+.+ |.|..+||..++|+..||...+++.-.|
T Consensus 45 ~glt~~q~~iL~~l~~~~~~t~~~La~~l~i~~~~vs~~v~~L~~~ 90 (162)
T 2fa5_A 45 YGMAIPEWRVITILALYPGSSASEVSDRTAMDKVAVSRAVARLLER 90 (162)
T ss_dssp HCCCHHHHHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 4979999999999986799899999999787871599999999857
No 122
>2eth_A Transcriptional regulator, putative, MAR family; TM0816, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=92.51 E-value=0.23 Score=26.28 Aligned_cols=44 Identities=20% Similarity=0.365 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 8889779999999985--9997999999499988999999999998
Q gi|254780694|r 184 FELTGREVECLTWISE--GKTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 184 ~~LT~RE~eVl~lia~--G~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
.+||.-|..||..+++ +.|..+||..+++|..||..-++++-.|
T Consensus 40 ~~ls~~q~~vL~~l~~~~~~t~~eLa~~l~i~~~tvs~~i~~L~~~ 85 (154)
T 2eth_A 40 SDMKTTELYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLEKR 85 (154)
T ss_dssp HHSBHHHHHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 6999999999999998699499999999897988999999999988
No 123
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genomics, transcription; 2.05A {Pyrococcus horikoshii OT3} SCOP: a.4.5.28
Probab=92.51 E-value=0.14 Score=27.52 Aligned_cols=41 Identities=10% Similarity=0.222 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 977999999998--59997999999499988999999999998
Q gi|254780694|r 187 TGREVECLTWIS--EGKTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 187 T~RE~eVl~lia--~G~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
+|.+..||..+. .+.|..|||+.+++|..||..|++..-.+
T Consensus 15 ~p~r~~IL~~L~~~~~~t~~eLa~~l~is~~~vs~~l~~Le~~ 57 (100)
T 1ub9_A 15 NPVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERN 57 (100)
T ss_dssp SHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 9999999999851899839999999891998999999999858
No 124
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=92.48 E-value=0.28 Score=25.70 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHCC-CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 888897799999999859-997999999499988999999999998
Q gi|254780694|r 183 DFELTGREVECLTWISEG-KTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 183 ~~~LT~RE~eVl~lia~G-~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
..++|+-+.-||..+.+| .|..+||..+++|..||...+++.-+|
T Consensus 32 ~~~lt~~q~~vL~~i~~~~~t~~ela~~~~i~~~~vs~~i~~L~~~ 77 (146)
T 2gxg_A 32 ELNLSYLDFLVLRATSDGPKTMAYLANRYFVTQSAITASVDKLEEM 77 (146)
T ss_dssp TTTCCHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 7697999999999998599199999999897986999999999868
No 125
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=92.07 E-value=0.35 Score=25.07 Aligned_cols=43 Identities=26% Similarity=0.353 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHHC----CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 889779999999985----9997999999499988999999999998
Q gi|254780694|r 185 ELTGREVECLTWISE----GKTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 185 ~LT~RE~eVl~lia~----G~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
.||..+..||..+.. |.|..+||..+++|..||..-+++.-.|
T Consensus 38 ~Lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~i~~stvs~~v~~Le~~ 84 (189)
T 3nqo_A 38 ILTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKN 84 (189)
T ss_dssp SSCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 99999999999998478999099999999896886999999999987
No 126
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, DNA binding protein/DNA complex, transferase; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=92.07 E-value=0.24 Score=26.16 Aligned_cols=16 Identities=6% Similarity=0.052 Sum_probs=8.6
Q ss_pred CCCCCCHHHHHHHHHH
Q ss_conf 8888897799999999
Q gi|254780694|r 182 KDFELTGREVECLTWI 197 (246)
Q Consensus 182 ~~~~LT~RE~eVl~li 197 (246)
-.+.|-|-|..+-.++
T Consensus 276 ySPdLNPIE~~~W~~l 291 (345)
T 3hot_A 276 YSPDLAPSDYHLFASM 291 (345)
T ss_dssp TCGGGCHHHHTHHHHH
T ss_pred CCCCCCCHHHHHHHHH
T ss_conf 9977674559999999
No 127
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=92.06 E-value=0.073 Score=29.42 Aligned_cols=48 Identities=21% Similarity=0.286 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHHHHH--HCCCCHHHHHHHHC----CCHHHHHHHHHHHHHHHCC
Q ss_conf 888897799999999--85999799999949----9988999999999998079
Q gi|254780694|r 183 DFELTGREVECLTWI--SEGKTSDEIAVILG----ISRNTVNNYIASIMRKTAT 230 (246)
Q Consensus 183 ~~~LT~RE~eVl~li--a~G~t~~eIA~~L~----iS~~TV~~hl~~i~~KLgv 230 (246)
...||+.|.+|+..+ ..+.|.+||.+.|. ++..||.+.++++..|==+
T Consensus 30 ~~~LS~~E~~VM~iLW~~~~~t~~eI~~~l~~~~~~~~sTv~T~L~RL~~KG~l 83 (99)
T 2k4b_A 30 EFNVSNAELIVMRVIWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEML 83 (99)
T ss_dssp -CCCCCSCSHHHHHHHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSC
T ss_pred CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCE
T ss_conf 169999999999999907995899999998501386556699999999988987
No 128
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, structural genomics, PSI-2; 2.01A {Silicibacter pomeroyi dss-3}
Probab=92.04 E-value=0.24 Score=26.13 Aligned_cols=44 Identities=18% Similarity=0.239 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 8889779999999985--9997999999499988999999999998
Q gi|254780694|r 184 FELTGREVECLTWISE--GKTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 184 ~~LT~RE~eVl~lia~--G~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
.+||+.+..||..+++ |.|-.+||..++++..||...++++-.|
T Consensus 36 ~glt~~q~~vL~~l~~~~~~t~~~La~~l~~~~~~is~~l~~L~~~ 81 (152)
T 3bj6_A 36 EGVTVGQRAILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQRA 81 (152)
T ss_dssp TTCCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 6979999999999998799899999999896987999999999988
No 129
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis 89}
Probab=91.97 E-value=0.33 Score=25.22 Aligned_cols=45 Identities=11% Similarity=0.062 Sum_probs=39.3
Q ss_pred CCCCCHHHHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 8888977999999998--59997999999499988999999999998
Q gi|254780694|r 183 DFELTGREVECLTWIS--EGKTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 183 ~~~LT~RE~eVl~lia--~G~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
..+||..+..||..+. .|.|.++||+.+++|..||...+++.-.|
T Consensus 26 ~~glt~~q~~vL~~l~~~~~~t~~~la~~l~i~~~tvs~~v~~L~~~ 72 (142)
T 3bdd_A 26 QLGISLTRYSILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLEES 72 (142)
T ss_dssp HHSSCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 84969999999999987799899999999896986899999999858
No 130
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} PDB: 1lnw_A 3mex_A
Probab=91.90 E-value=0.29 Score=25.59 Aligned_cols=45 Identities=18% Similarity=0.299 Sum_probs=39.4
Q ss_pred CCCCCHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 88889779999999985--9997999999499988999999999998
Q gi|254780694|r 183 DFELTGREVECLTWISE--GKTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 183 ~~~LT~RE~eVl~lia~--G~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
..+||+-|..||..+.+ |.|..+||..+++|..||...++++-.|
T Consensus 32 ~~~lt~~q~~iL~~l~~~~~~t~~~La~~l~i~~~~vsr~l~~L~~~ 78 (142)
T 3ech_A 32 RLDLTPPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEGR 78 (142)
T ss_dssp TCCCCHHHHHHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 68979999999999997799899999999896987999999999987
No 131
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MARR), structural genomics, PSI-2; HET: MSE; 2.04A {Oenococcus oeni psu-1} SCOP: a.4.5.28
Probab=91.86 E-value=0.35 Score=25.09 Aligned_cols=46 Identities=17% Similarity=0.361 Sum_probs=38.5
Q ss_pred CCCCCCHHHHHHHHHHHC--C--CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 888889779999999985--9--997999999499988999999999998
Q gi|254780694|r 182 KDFELTGREVECLTWISE--G--KTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 182 ~~~~LT~RE~eVl~lia~--G--~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
..++||+-+..||..+++ | .|.++||+.++++..||..-++.+-.|
T Consensus 28 ~~~glt~~q~~vL~~l~~~~~~~~t~~~La~~l~i~~~~vs~~v~~L~~~ 77 (141)
T 3bro_A 28 KKYDLTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIK 77 (141)
T ss_dssp HTTTCCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 88698999999999998489999599999999897885899999999887
No 132
>3boq_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=91.81 E-value=0.13 Score=27.74 Aligned_cols=45 Identities=9% Similarity=0.297 Sum_probs=39.4
Q ss_pred CCCCCHHHHHHHHHHHC---CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 88889779999999985---9997999999499988999999999998
Q gi|254780694|r 183 DFELTGREVECLTWISE---GKTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 183 ~~~LT~RE~eVl~lia~---G~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
.++||+.+..||..+.+ |.|..+||..+++|..||...+++.-.|
T Consensus 42 ~~glt~~q~~vL~~L~~~~~~~t~~~La~~~~v~~~~vs~~i~~Le~~ 89 (160)
T 3boq_A 42 ETGLSLAKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIKD 89 (160)
T ss_dssp HHSCCHHHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 819299999999999868999989999999896885899999999867
No 133
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=91.76 E-value=0.18 Score=26.87 Aligned_cols=33 Identities=12% Similarity=0.124 Sum_probs=20.4
Q ss_pred HCCCHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHCCCC
Q ss_conf 4999889999999999980799---889999999975898
Q gi|254780694|r 210 LGISRNTVNNYIASIMRKTATK---TRSGAIAYAVRNNIV 246 (246)
Q Consensus 210 L~iS~~TV~~hl~~i~~KLgv~---~R~eav~~A~~~Gli 246 (246)
.+++... ++++-.+.++. ++++++.=|.+.|+|
T Consensus 265 i~i~l~~----lr~i~~~I~vA~G~~K~~AI~aAL~gg~i 300 (315)
T 2w48_A 265 LSIEMAK----LRQARYSIGIAMGEEKYSGILGALHGRYI 300 (315)
T ss_dssp CBCCHHH----HHTSSEEEEECCCGGGHHHHHHHHHTTSC
T ss_pred ECCCHHH----HCCCCCEEEEECCCHHHHHHHHHHHCCCC
T ss_conf 2378799----72689789996684559999999836999
No 134
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=91.73 E-value=0.2 Score=26.66 Aligned_cols=34 Identities=29% Similarity=0.465 Sum_probs=27.1
Q ss_pred HHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99999998--59997999999499988999999999
Q gi|254780694|r 191 VECLTWIS--EGKTSDEIAVILGISRNTVNNYIASI 224 (246)
Q Consensus 191 ~eVl~lia--~G~t~~eIA~~L~iS~~TV~~hl~~i 224 (246)
.++++++- +|.|.++||..+|||+.||..-++..
T Consensus 12 ~~aV~l~~~~~g~s~~~vA~~~GIs~~tl~~W~k~~ 47 (97)
T 2jn6_A 12 RDAVALYENSDGASLQQIANDLGINRVTLKNWIIKY 47 (97)
T ss_dssp HHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 999999998499859999999789957446899998
No 135
>1u2w_A CADC repressor, cadmium efflux system accessory protein; zinc, LEAD, SOFT metal ION resistance, ARSR/SMTB family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=91.71 E-value=0.29 Score=25.62 Aligned_cols=40 Identities=13% Similarity=0.203 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHH-CC-CCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 977999999998-59-99799999949998899999999999
Q gi|254780694|r 187 TGREVECLTWIS-EG-KTSDEIAVILGISRNTVNNYIASIMR 226 (246)
Q Consensus 187 T~RE~eVl~lia-~G-~t~~eIA~~L~iS~~TV~~hl~~i~~ 226 (246)
.|.=.+|+..++ .| .+..|||..|++|..||..|++.+..
T Consensus 41 dp~Rl~Il~~L~~~~~~~v~ela~~l~~s~s~vS~HL~~L~~ 82 (122)
T 1u2w_A 41 DENRAKITYALCQDEELCVCDIANILGVTIANASHHLRTLYK 82 (122)
T ss_dssp SHHHHHHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999999999998788927999999988873269999999998
No 136
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus}
Probab=91.71 E-value=0.29 Score=25.61 Aligned_cols=45 Identities=29% Similarity=0.476 Sum_probs=39.0
Q ss_pred CCCCCHHHHHHHHHHH----CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 8888977999999998----59997999999499988999999999998
Q gi|254780694|r 183 DFELTGREVECLTWIS----EGKTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 183 ~~~LT~RE~eVl~lia----~G~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
..+||..+..||..++ .|.|..|||..++++..||..-++.+-.|
T Consensus 26 ~~glt~~q~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~v~~L~~~ 74 (139)
T 3eco_A 26 QFDITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERK 74 (139)
T ss_dssp GGTCCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 7698999999999998359999699999999896887899999999978
No 137
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=91.69 E-value=0.23 Score=26.28 Aligned_cols=45 Identities=13% Similarity=0.093 Sum_probs=38.4
Q ss_pred CCCCCHHHHHHHHHHHCC-CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 888897799999999859-997999999499988999999999998
Q gi|254780694|r 183 DFELTGREVECLTWISEG-KTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 183 ~~~LT~RE~eVl~lia~G-~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
..+||..+..||..++++ .|..+||..+++|..||...+++.-.|
T Consensus 32 ~~~lt~~q~~iL~~i~~~~~t~~~la~~~~~~~~tvs~~i~~L~~~ 77 (144)
T 3f3x_A 32 LMNLSYLDFSILKATSEEPRSMVYLANRYFVTQSAITAAVDKLEAK 77 (144)
T ss_dssp HHSCCHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 6499999999999999199699999999897886899999999988
No 138
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structural genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=91.61 E-value=0.25 Score=25.98 Aligned_cols=45 Identities=9% Similarity=0.102 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 88889779999999985--9997999999499988999999999998
Q gi|254780694|r 183 DFELTGREVECLTWISE--GKTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 183 ~~~LT~RE~eVl~lia~--G~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
..+||..|..||..+.. |.|..|||..++++..||...++++-.|
T Consensus 38 ~~gLt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~v~~L~~~ 84 (155)
T 3cdh_A 38 AQGLRVPEWRVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDAR 84 (155)
T ss_dssp HTTCCHHHHHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 82969999999999985799699999999896998899999999968
No 139
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=91.43 E-value=0.21 Score=26.52 Aligned_cols=46 Identities=24% Similarity=0.299 Sum_probs=40.4
Q ss_pred CCCCCCHHHHHHHHHHHC--C--CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 888889779999999985--9--997999999499988999999999998
Q gi|254780694|r 182 KDFELTGREVECLTWISE--G--KTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 182 ~~~~LT~RE~eVl~lia~--G--~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
..++||.-|..||..+.+ | .|-.+||..++++..||...+++...|
T Consensus 31 ~~~~lt~~q~~iL~~l~~~~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~ 80 (127)
T 2frh_A 31 KEFSISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQE 80 (127)
T ss_dssp HTTCCCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHT
T ss_pred HHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 88597999999999998289998789999999798873699999999978
No 140
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=91.24 E-value=0.43 Score=24.51 Aligned_cols=46 Identities=26% Similarity=0.456 Sum_probs=39.0
Q ss_pred CCCCCCHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 888889779999999985--9997999999499988999999999998
Q gi|254780694|r 182 KDFELTGREVECLTWISE--GKTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 182 ~~~~LT~RE~eVl~lia~--G~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
..++||+.|..||..+.. |.|.++||..+++|..||..-+++.-.|
T Consensus 27 ~~~gLt~~q~~vL~~i~~~~~~t~~ela~~~~~~~~~vs~~v~~L~~~ 74 (145)
T 2a61_A 27 RDFGITPAQFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEAD 74 (145)
T ss_dssp HHHTCCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCC
T ss_conf 885979999999999987799899999999897987899999998528
No 141
>3hef_A Gene 1 protein; bacteriophage SF6, terminase small subunit GP1, GP1 octameric assembly, GP1 channel, DNA recognition, DNA packaging; 1.65A {Enterobacteria phage SF6}
Probab=91.23 E-value=0.11 Score=28.20 Aligned_cols=44 Identities=16% Similarity=0.256 Sum_probs=35.5
Q ss_pred CCCCCCCCHH-HHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHHH
Q ss_conf 7988888977-99999999859997999999499-98899999999
Q gi|254780694|r 180 WGKDFELTGR-EVECLTWISEGKTSDEIAVILGI-SRNTVNNYIAS 223 (246)
Q Consensus 180 ~~~~~~LT~R-E~eVl~lia~G~t~~eIA~~L~i-S~~TV~~hl~~ 223 (246)
.++...+|+. .-+|+.+++.|+|..+|+...+| |..||...+++
T Consensus 10 ~GRPtk~t~e~~e~I~~~l~~G~sl~~i~~~~gvps~sT~~~Wl~~ 55 (143)
T 3hef_A 10 AGRPSDYMPEVADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAK 55 (143)
T ss_dssp ---CCSCCHHHHHHHHHHHHTTCCHHHHHTSTTCCCHHHHHHHTTT
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 9998657999999999999889859999870799968999999971
No 142
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DNA-binding, plasmid, transcription regulation; 2.00A {Bacillus anthracis}
Probab=90.95 E-value=0.27 Score=25.80 Aligned_cols=37 Identities=14% Similarity=0.219 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 779999999985--9997999999499988999999999
Q gi|254780694|r 188 GREVECLTWISE--GKTSDEIAVILGISRNTVNNYIASI 224 (246)
Q Consensus 188 ~RE~eVl~lia~--G~t~~eIA~~L~iS~~TV~~hl~~i 224 (246)
|.=.+|+.++.+ +++..||+..+++|..||-+|++..
T Consensus 27 p~Rl~Il~~L~~~~~~~v~el~~~l~~s~stvS~HL~~L 65 (99)
T 2zkz_A 27 PMRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKM 65 (99)
T ss_dssp HHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999999999977899279998998884976999999999
No 143
>3cjn_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=90.77 E-value=0.34 Score=25.10 Aligned_cols=45 Identities=11% Similarity=0.285 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 8888977999999998--59997999999499988999999999998
Q gi|254780694|r 183 DFELTGREVECLTWIS--EGKTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 183 ~~~LT~RE~eVl~lia--~G~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
..+||+-|..||..+. .|.|..+||..++++..||...++++-+|
T Consensus 47 ~~gLt~~q~~iL~~l~~~~~~t~~~La~~~~~~~~~vsr~v~~L~~~ 93 (162)
T 3cjn_A 47 ALGLSTAKMRALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQAD 93 (162)
T ss_dssp HHTCCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 85959999999999984799899999999897988999999999868
No 144
>2hqn_A Putative transcriptional regulator; phosporylation-independent response regulator, signaling protein; NMR {Helicobacter pylori J99}
Probab=90.75 E-value=0.11 Score=28.18 Aligned_cols=50 Identities=20% Similarity=0.381 Sum_probs=41.8
Q ss_pred CCCCCCCHHHHHHHHHHHCC----CCHHHHHHHHC-----CCHHHHHHHHHHHHHHHCC
Q ss_conf 98888897799999999859----99799999949-----9988999999999998079
Q gi|254780694|r 181 GKDFELTGREVECLTWISEG----KTSDEIAVILG-----ISRNTVNNYIASIMRKTAT 230 (246)
Q Consensus 181 ~~~~~LT~RE~eVl~lia~G----~t~~eIA~~L~-----iS~~TV~~hl~~i~~KLgv 230 (246)
+....||++|.++|.++++- .|-.+|...+. .+.+||+.|++++.+||.-
T Consensus 25 ~~~v~Lt~~E~~lL~~L~~~~g~vvsr~~L~~~vw~~~~~~~~~~l~~~I~rLRkkl~~ 83 (109)
T 2hqn_A 25 GREVEVKGKPFEVLTHLARHRDQIVSKEQLLDAIWEEPEMVTPNVIEVAINQIRQKMDK 83 (109)
T ss_dssp TEEEECCCSTHHHHHHHHHHTCSEEEHHHHHHHHCCSCGGGCTTHHHHHHHHHHHHTTT
T ss_pred CEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 99996499999999999967999878999999860977776744099999999998605
No 145
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A
Probab=90.61 E-value=0.3 Score=25.45 Aligned_cols=44 Identities=14% Similarity=0.318 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHHHHHC-CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 8889779999999985-9997999999499988999999999998
Q gi|254780694|r 184 FELTGREVECLTWISE-GKTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 184 ~~LT~RE~eVl~lia~-G~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
++||..|..||..++. |.|..+||..++++..||...++..-.|
T Consensus 34 ~glt~~q~~iL~~l~~~~~t~~~la~~l~i~~~~vs~~i~~L~~~ 78 (151)
T 3kp7_A 34 YGISAEQSHVLNMLSIEALTVGQITEKQGVNKAAVSRRVKKLLNA 78 (151)
T ss_dssp HTCCHHHHHHHHHHHHSCBCHHHHHHHHCSCSSHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 599999999999986289999999999896888999999999888
No 146
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=90.52 E-value=0.55 Score=23.81 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=26.2
Q ss_pred CHHH--HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9779--999999985999799999949998899999999
Q gi|254780694|r 187 TGRE--VECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 (246)
Q Consensus 187 T~RE--~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~ 223 (246)
+=+| ..+..+...|+|-++||..|++|..||.++++=
T Consensus 9 ~~~E~g~~~~~l~~~g~tQ~elAe~lg~Srs~Vsr~lrl 47 (192)
T 1zx4_A 9 SIREIGLRLMRMKNDGMSQKDIAAKEGLSQAKVTRALQA 47 (192)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 699999999999985999999999988799999999999
No 147
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- plasmid, transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A
Probab=90.50 E-value=0.47 Score=24.25 Aligned_cols=15 Identities=20% Similarity=0.499 Sum_probs=9.2
Q ss_pred CCCCHHHHHHHHHHH
Q ss_conf 888977999999998
Q gi|254780694|r 184 FELTGREVECLTWIS 198 (246)
Q Consensus 184 ~~LT~RE~eVl~lia 198 (246)
..+++.....++++-
T Consensus 278 ~~~~~~~~~fi~~i~ 292 (305)
T 3fxq_A 278 LPVTPAAAGLIRWIQ 292 (305)
T ss_dssp SCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
T ss_conf 988999999999999
No 148
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structural genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=90.37 E-value=0.48 Score=24.20 Aligned_cols=45 Identities=13% Similarity=0.178 Sum_probs=39.3
Q ss_pred CCCCCHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 88889779999999985--9997999999499988999999999998
Q gi|254780694|r 183 DFELTGREVECLTWISE--GKTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 183 ~~~LT~RE~eVl~lia~--G~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
..+||..|.-||..+.+ |.|..+||..++++..||...++++-.|
T Consensus 26 ~~gls~~~~~iL~~l~~~~~~t~~~la~~l~~~~~~vs~~i~~L~~~ 72 (145)
T 3g3z_A 26 QQDLNYNLFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQ 72 (145)
T ss_dssp TTTCCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 86989999999999998799499999999896988999999999857
No 149
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=90.25 E-value=0.085 Score=29.00 Aligned_cols=44 Identities=16% Similarity=0.236 Sum_probs=32.7
Q ss_pred CHHHHHHH-HHHHCC-CCHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 97799999-999859-9979999994999889999999999980799
Q gi|254780694|r 187 TGREVECL-TWISEG-KTSDEIAVILGISRNTVNNYIASIMRKTATK 231 (246)
Q Consensus 187 T~RE~eVl-~lia~G-~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~ 231 (246)
|..|++++ .++..| .+..++|+.|++++..|+.-+.++ .++|+-
T Consensus 163 ~~~~~~ll~~~l~~~~~~~dela~~l~l~~~eV~~~l~~l-~~~g~v 208 (232)
T 2qlz_A 163 DMTQLAILHYLLLNGRATVEELSDRLNLKEREVREKISEM-ARFVPV 208 (232)
T ss_dssp CTTHHHHHHHHHHSSEEEHHHHHHHHTCCHHHHHHHHHHH-TTTSCE
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHH-HHHCCE
T ss_conf 6999999987761699889999978493999999999999-864302
No 150
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=90.19 E-value=0.47 Score=24.26 Aligned_cols=45 Identities=11% Similarity=0.200 Sum_probs=38.5
Q ss_pred CCCCCHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 88889779999999985--9997999999499988999999999998
Q gi|254780694|r 183 DFELTGREVECLTWISE--GKTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 183 ~~~LT~RE~eVl~lia~--G~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
..+||..+..||..+.+ |.|..+||+.+++|..||...+++.-+|
T Consensus 41 ~~glt~~q~~vL~~l~~~~~~t~~~La~~l~~~~~~vs~~l~~L~~~ 87 (162)
T 3k0l_A 41 ALEISLPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLAN 87 (162)
T ss_dssp TTTCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHHT
T ss_pred HCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 75979999999999997799899999999896886999999999988
No 151
>1z91_A Organic hydroperoxide resistance transcriptional regulator; OHRR, MARR family, bacterial transcription factor, DNA binding protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=90.17 E-value=0.55 Score=23.80 Aligned_cols=46 Identities=13% Similarity=0.146 Sum_probs=39.4
Q ss_pred CCCCCCHHHHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 88888977999999998--59997999999499988999999999998
Q gi|254780694|r 182 KDFELTGREVECLTWIS--EGKTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 182 ~~~~LT~RE~eVl~lia--~G~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
...+||+-|..||..+. .|.|..+||..++++..||..-++++-+|
T Consensus 34 ~~~glt~~q~~vL~~l~~~~~~t~~eLa~~~~i~~~tit~~i~~L~~~ 81 (147)
T 1z91_A 34 DKLNITYPQYLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQQ 81 (147)
T ss_dssp TTTCCCHHHHHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 886989999999999997799499999999797887899999999988
No 152
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural genomics, DNA-binding protein, PSI-2; 2.30A {Agrobacterium tumefaciens str}
Probab=90.13 E-value=0.53 Score=23.92 Aligned_cols=49 Identities=12% Similarity=0.065 Sum_probs=45.1
Q ss_pred CCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 8888977999999998599979999994999889999999999980799
Q gi|254780694|r 183 DFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 (246)
Q Consensus 183 ~~~LT~RE~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~ 231 (246)
...+.+.-.+++.-|++=.|-..-|+.|++|..+|..+++.+=.+||+.
T Consensus 21 ~~~~~~~~~~ll~aV~~~GSit~AA~~L~iSq~avs~~i~~LE~~lg~~ 69 (135)
T 2ijl_A 21 GERLGHGKVELMQLIAETGSISAAGRAMDMSYRRAWLLVDALNHMFRQP 69 (135)
T ss_dssp TEEESHHHHHHHHHHHHHSCHHHHHHHTTCCHHHHHHHHHHHHHHBSSC
T ss_pred CCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCE
T ss_conf 6654978999999999969999999997889889999999999982985
No 153
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=90.09 E-value=0.45 Score=24.38 Aligned_cols=43 Identities=16% Similarity=0.052 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHHHCC--CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 8897799999999859--997999999499988999999999998
Q gi|254780694|r 185 ELTGREVECLTWISEG--KTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 185 ~LT~RE~eVl~lia~G--~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
.|+.+|..||..+.+. .|+++++..|++|..|++.+++++-.|
T Consensus 427 ~l~~~~~~iL~~l~~~~~it~~ela~~l~~s~~~~~~~L~~L~~~ 471 (583)
T 3lmm_A 427 QDDYRIAIVLYLLFQRPFITIDVVARGLQSGKEAARNALEAARQT 471 (583)
T ss_dssp TTCHHHHHHHHHHHHSSSBCHHHHHHHHTSCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 676678999999986888789999988688999999999999977
No 154
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum}
Probab=89.91 E-value=0.28 Score=25.70 Aligned_cols=45 Identities=13% Similarity=0.361 Sum_probs=39.0
Q ss_pred CCCCCHHHHHHHHHHH----CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 8888977999999998----59997999999499988999999999998
Q gi|254780694|r 183 DFELTGREVECLTWIS----EGKTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 183 ~~~LT~RE~eVl~lia----~G~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
.++||+.|..||..+. .|.|-.+||..++++..||..-++++-.|
T Consensus 36 ~~glt~~q~~vL~~L~~~~~~~it~~eLa~~l~~~~~~~sr~l~~L~~~ 84 (148)
T 3jw4_A 36 ELGLNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKK 84 (148)
T ss_dssp HTTCCHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHT
T ss_pred HCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 7598999999999999379999399999999897785899999999988
No 155
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomics, PSI, protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=89.85 E-value=0.54 Score=23.86 Aligned_cols=45 Identities=18% Similarity=0.192 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 8888977999999998--59997999999499988999999999998
Q gi|254780694|r 183 DFELTGREVECLTWIS--EGKTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 183 ~~~LT~RE~eVl~lia--~G~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
..+||.-|..||..+. .|.+..+||..++++..||...++++-.|
T Consensus 31 ~~glt~~q~~vL~~l~~~~~~~~~~la~~l~i~~~~vs~~i~~L~~~ 77 (142)
T 2fbi_A 31 QHGLTEQQWRVIRILRQQGEMESYQLANQACILRPSMTGVLARLERD 77 (142)
T ss_dssp HHTCCHHHHHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 84989999999999998799799999999798988999999999958
No 156
>1s8n_A Putative antiterminator; structural genomics, transcriptional antiterminator, two component system, PSI; 1.48A {Mycobacterium tuberculosis H37RV} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=89.71 E-value=0.86 Score=22.55 Aligned_cols=188 Identities=9% Similarity=-0.030 Sum_probs=90.5
Q ss_pred EEEEECCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEECCCCCHHHH
Q ss_conf 00022144588887655302321379999732799999999999998719302300026663111232100068958999
Q gi|254780694|r 8 VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87 (246)
Q Consensus 8 ~~~~l~r~d~~r~~~v~~l~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 87 (246)
.+|++..+|+.....+..++...++ .-+..+.+..+....+... .+.....++.+.+..+.++.
T Consensus 14 ~rILIVDDd~~~r~~l~~~L~~~G~-~vv~~a~~g~eal~~~~~~---------------~pDlillDi~MP~mdGle~~ 77 (205)
T 1s8n_A 14 RRVLIAEDEALIRMDLAEMLREEGY-EIVGEAGDGQEAVELAELH---------------KPDLVIMDVKMPRRDGIDAA 77 (205)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHH---------------CCSEEEEESSCSSSCHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHC---------------CCCEEEEECCCCCCCHHHHH
T ss_conf 8899982989999999999998699-7999989999999999837---------------99999996404586079999
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 99996698451738999985232443032543333214457147503373689999999717875469899999999999
Q gi|254780694|r 88 RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAA 167 (246)
Q Consensus 88 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (246)
+.+..... -|++ .............+...++.+|+.+++........+................. .
T Consensus 78 ~~ir~~~~---~pii------ilTa~~~~~~~~~al~~Ga~dyl~KP~~~~~l~~~i~~~l~~~~~~~~~~~~~-~---- 143 (205)
T 1s8n_A 78 SEIASKRI---APIV------VLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRFREITALEGEV-A---- 143 (205)
T ss_dssp HHHHHTTC---SCEE------EEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHHHHHHHHHHHC-S----
T ss_pred HHHHHCCC---CCEE------EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH-H----
T ss_conf 99985699---9989------99567889999999982984214389999999999999998644310247787-6----
Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHH----CCCHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 9997542014677988888977999999998599979999994----999889999999999980799889
Q gi|254780694|r 168 YQANMFKSYDVHWGKDFELTGREVECLTWISEGKTSDEIAVIL----GISRNTVNNYIASIMRKTATKTRS 234 (246)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~LT~RE~eVl~lia~G~t~~eIA~~L----~iS~~TV~~hl~~i~~KLgv~~R~ 234 (246)
...... ....+..++.+++ ....+.+..++-..+ .....|++.+...|+.|||..+.|
T Consensus 144 ~~~~~~--------~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~dt 205 (205)
T 1s8n_A 144 TLSERL--------ETRKLVERAKGLL-QTKHGMTEPDAFKWIQRAAMDRRTTMKRVAEVVLETLGTPKDT 205 (205)
T ss_dssp SHHHHH--------HHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHC-----
T ss_pred HHHHHH--------HHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 655317--------8877889899999-7753047489999999970061337999999999970897799
No 157
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=89.51 E-value=0.25 Score=26.03 Aligned_cols=44 Identities=16% Similarity=0.216 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 8889779999999985--9997999999499988999999999998
Q gi|254780694|r 184 FELTGREVECLTWISE--GKTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 184 ~~LT~RE~eVl~lia~--G~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
.+||+-|..||..+.. |.|..+||..+++|..||...+++.-+|
T Consensus 33 ~glt~~q~~vL~~i~~~~~~t~~~la~~l~~~~~~vs~~l~~L~~~ 78 (142)
T 2bv6_A 33 YNLTYPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQV 78 (142)
T ss_dssp HTCCHHHHHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 6979999999999997799899999999897987999999999988
No 158
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, structural genomics; 2.38A {Bacillus cereus atcc 10987}
Probab=89.49 E-value=0.38 Score=24.81 Aligned_cols=45 Identities=7% Similarity=0.222 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 88889779999999985--9997999999499988999999999998
Q gi|254780694|r 183 DFELTGREVECLTWISE--GKTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 183 ~~~LT~RE~eVl~lia~--G~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
.++||+-|..||..+.+ |.|..+||+.+++|..||...++.+-.|
T Consensus 28 ~~~lt~~q~~vL~~l~~~~~~t~~~La~~l~~~~~tvs~~l~~L~~~ 74 (139)
T 3bja_A 28 QYDISYVQFGVIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQRMKRD 74 (139)
T ss_dssp GGTCCHHHHHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHHHT
T ss_pred HCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf 86989999999999998699899999847086888999999999988
No 159
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, domain, PSI, MCSG, structural genomics; 1.40A {Staphylococcus epidermidis atcc 12228}
Probab=89.46 E-value=0.73 Score=23.01 Aligned_cols=49 Identities=22% Similarity=0.159 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHC------CCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 8889779999999985------9997999999499988999999999998079988999
Q gi|254780694|r 184 FELTGREVECLTWISE------GKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGA 236 (246)
Q Consensus 184 ~~LT~RE~eVl~lia~------G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~ea 236 (246)
..||+.|+.|++++-+ -+|-.+||...++|+.||- +..+|||-.+=.+.
T Consensus 13 ~~ls~se~~Ia~yil~~~~~i~~~si~elA~~~~VS~aTi~----Rf~kklGf~gf~df 67 (107)
T 3iwf_A 13 PYFTKNEKKIAQFILNYPHKVVNMTSQEIANQLETSSTSII----RLSKKVTPGGFNEL 67 (107)
T ss_dssp GGSCHHHHHHHHHHHHCHHHHTTCCHHHHHHHHTSCHHHHH----HHHHHHSTTHHHHH
T ss_pred HHCCHHHHHHHHHHHHCHHHHHHCCHHHHHHHHCCCHHHHH----HHHHHHCCCCHHHH
T ss_conf 66399999999999959999977659999989798998999----99999588989999
No 160
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcriptional regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A
Probab=89.45 E-value=0.29 Score=25.55 Aligned_cols=45 Identities=13% Similarity=0.177 Sum_probs=39.3
Q ss_pred CCCCCHHHHHHHHHHHCC--CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 888897799999999859--997999999499988999999999998
Q gi|254780694|r 183 DFELTGREVECLTWISEG--KTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 183 ~~~LT~RE~eVl~lia~G--~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
.++||..+..||..+.+. .|..+||..+++++.||..-+++.-.|
T Consensus 31 ~~glt~~q~~vL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~L~~~ 77 (140)
T 3hsr_A 31 EYDLTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKK 77 (140)
T ss_dssp GGTCCHHHHHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 85999999999999986799899999999897864799999999727
No 161
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=89.22 E-value=0.75 Score=22.94 Aligned_cols=46 Identities=11% Similarity=0.070 Sum_probs=40.5
Q ss_pred CCCCCCHHHHHHHHHHHC----CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 888889779999999985----9997999999499988999999999998
Q gi|254780694|r 182 KDFELTGREVECLTWISE----GKTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 182 ~~~~LT~RE~eVl~lia~----G~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
..++||..|..||..+.+ +.|-++||+.+++|..||...++++..|
T Consensus 152 k~~~Ls~~e~~vL~~L~~~~~~~~~~~~la~~l~~~~~~vs~~i~~L~~~ 201 (250)
T 1p4x_A 152 KHLTLSFVEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQ 201 (250)
T ss_dssp HHCSSCHHHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 87498999999999998699996769999999788850699999999988
No 162
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=88.88 E-value=0.69 Score=23.16 Aligned_cols=44 Identities=23% Similarity=0.447 Sum_probs=35.7
Q ss_pred HHHHHHHHHH---HCC--CCHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 7799999999---859--9979999994999889999999999980799
Q gi|254780694|r 188 GREVECLTWI---SEG--KTSDEIAVILGISRNTVNNYIASIMRKTATK 231 (246)
Q Consensus 188 ~RE~eVl~li---a~G--~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~ 231 (246)
+.|..|+..+ .+| -|..+||..|+++-++|+.++-++.++-.+.
T Consensus 14 d~e~kIl~~L~~~g~g~~~tA~~LAk~lg~~Kk~vN~~LY~L~k~g~v~ 62 (77)
T 1qgp_A 14 DQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQ 62 (77)
T ss_dssp HHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEE
T ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
T ss_conf 8899999999965898760299999996988888899999999878953
No 163
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=87.86 E-value=0.63 Score=23.43 Aligned_cols=44 Identities=14% Similarity=0.187 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 8889779999999985--9997999999499988999999999998
Q gi|254780694|r 184 FELTGREVECLTWISE--GKTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 184 ~~LT~RE~eVl~lia~--G~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
.+||..|.-||..+.+ +.|..+||..++++..||...++.+-.|
T Consensus 49 ~gLt~~q~~vL~~l~~~~~~t~~~la~~l~i~~~~vs~~i~~L~~~ 94 (161)
T 3e6m_A 49 EKLPTPKLRLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLVDE 94 (161)
T ss_dssp HTCCHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 6979999999999997799899999999897887999999999838
No 164
>1stz_A Heat-inducible transcription repressor HRCA homolog; circe element, structural genomics, BSGC structure funded by NIH; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=87.08 E-value=0.65 Score=23.31 Aligned_cols=16 Identities=25% Similarity=0.349 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHHCC
Q ss_conf 99999999999987193
Q gi|254780694|r 42 TVSWTMRMYALTEYVGA 58 (246)
Q Consensus 42 ~~~~~~~~~~~~~~~g~ 58 (246)
.+.+...+ +-.+..|+
T Consensus 52 sATIRN~M-a~LE~~G~ 67 (338)
T 1stz_A 52 SATIRNDM-KKLEYLGY 67 (338)
T ss_dssp HHHHHHHH-HHHHHTTS
T ss_pred CHHHHHHH-HHHHHCCC
T ss_conf 08899999-99997867
No 165
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=86.95 E-value=0.81 Score=22.71 Aligned_cols=50 Identities=18% Similarity=0.244 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 888977999999998599979999994999889999999999980799889
Q gi|254780694|r 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRS 234 (246)
Q Consensus 184 ~~LT~RE~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~ 234 (246)
...+.|.++|.+-. .|.+..+.|.+-++|+++|...++...+.--.+++.
T Consensus 77 ~~~~~Rn~~I~~ef-~G~n~~eLArkY~LS~r~I~~Ii~~~rk~~~~r~Q~ 126 (129)
T 1rr7_A 77 LDSLIRDLRIWNDF-NGRNVSELTTRYGVTFNTVYKAIRRMRRLKYRQYQP 126 (129)
T ss_dssp HHHHHHHHHHHHHC-CSSCHHHHHHHHTCCHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHHHC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999990-899899999998978999999999999999984234
No 166
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transcription regulation; NMR {Escherichia coli K12} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=86.87 E-value=0.31 Score=25.39 Aligned_cols=45 Identities=29% Similarity=0.335 Sum_probs=31.2
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHCCC
Q ss_conf 997999999499988999999999998--079988999999997589
Q gi|254780694|r 201 KTSDEIAVILGISRNTVNNYIASIMRK--TATKTRSGAIAYAVRNNI 245 (246)
Q Consensus 201 ~t~~eIA~~L~iS~~TV~~hl~~i~~K--Lgv~~R~eav~~A~~~Gl 245 (246)
.|-+|||+.+|+|..||...+++=-.+ ..-.+|...-..|.+.|.
T Consensus 1 vTlkdIA~~aGVS~sTVSrvLng~~~~~~Vs~~Tr~rV~~~a~~lgY 47 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNY 47 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 97999999988599999999859998787799999999999999888
No 167
>2o0m_A Transcriptional regulator, SORC family; structural genomics, PSI-2, protein structure initiative; 1.60A {Enterococcus faecalis V583} SCOP: c.124.1.8
Probab=86.38 E-value=0.11 Score=28.27 Aligned_cols=14 Identities=29% Similarity=0.283 Sum_probs=7.0
Q ss_pred CHHHHHHHHHHCCC
Q ss_conf 88999999997589
Q gi|254780694|r 232 TRSGAIAYAVRNNI 245 (246)
Q Consensus 232 ~R~eav~~A~~~Gl 245 (246)
.+++|+.-|.+.|+
T Consensus 311 ~Ka~AI~aAL~gg~ 324 (345)
T 2o0m_A 311 TKAKAIRAYMKNAP 324 (345)
T ss_dssp GGHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHCCC
T ss_conf 78999999995799
No 168
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=86.11 E-value=0.83 Score=22.66 Aligned_cols=109 Identities=8% Similarity=-0.166 Sum_probs=57.9
Q ss_pred HHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 97327999999999999987193023000266631112321000689589999999669845173899998523244303
Q gi|254780694|r 36 MIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHT 115 (246)
Q Consensus 36 l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 115 (246)
+..+++.......+.......|+...............++.++.+..++.. ..+........+|-. ..........
T Consensus 15 vLvvdd~~~~~~~l~~~L~~~G~~v~~~~~~~~al~~~~D~vl~D~~mp~~-~~~~~~~~~~~~~~~---pvI~lt~~~~ 90 (196)
T 1qo0_D 15 VLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAFDVPVDVVFTSIFQNRH-HDEIAALLAAGTPRT---TLVALVEYES 90 (196)
T ss_dssp EEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSCSSCCSEEEEECCSSTH-HHHHHHHHHHSCTTC---EEEEEECCCS
T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEECCCCHHHHCCCCCCEEEEECCCCCC-CHHHHHHHHHCCCCC---CEEEEECCCC
T ss_conf 999957999999999999986998871699799848899989984899998-599999998649999---8899845799
Q ss_pred CHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 254333321445714750337368999999971
Q gi|254780694|r 116 LPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148 (246)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (246)
..........++.+|+.+++........+....
T Consensus 91 ~~~~~~a~~~Ga~~yl~KP~~~~~L~~~l~~~~ 123 (196)
T 1qo0_D 91 PAVLSQIIELECHGVITQPLDAHRVLPVLVSAR 123 (196)
T ss_dssp HHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHH
T ss_conf 999999998599986559999899999999999
No 169
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=85.88 E-value=1.2 Score=21.68 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=31.1
Q ss_pred HHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf 999859997999999499988999999999998079
Q gi|254780694|r 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 (246)
Q Consensus 195 ~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv 230 (246)
++...+.|-++||...++|+.|++...+.++..|+.
T Consensus 160 ~~~~~~~t~~~Ia~~~~vs~~TI~k~~kel~~~l~~ 195 (200)
T 1ais_B 160 LLEGEKRTQREVAEVARVTEVTVRNRYKELVEKLKI 195 (200)
T ss_dssp HHTTCCCCHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred HHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
T ss_conf 985899899999989698898899999999988454
No 170
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Rhodococcus SP}
Probab=84.90 E-value=0.7 Score=23.12 Aligned_cols=14 Identities=21% Similarity=0.240 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHCC
Q ss_conf 999999999987193
Q gi|254780694|r 44 SWTMRMYALTEYVGA 58 (246)
Q Consensus 44 ~~~~~~~~~~~~~g~ 58 (246)
.+.+.+..+.+ .|+
T Consensus 52 t~~RlL~tL~~-~G~ 65 (265)
T 2ia2_A 52 TARRFLLTLVE-LGY 65 (265)
T ss_dssp HHHHHHHHHHH-HTS
T ss_pred HHHHHHHHHHH-CCC
T ss_conf 99999999998-799
No 171
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=84.46 E-value=0.74 Score=22.97 Aligned_cols=13 Identities=15% Similarity=0.189 Sum_probs=4.9
Q ss_pred CCH-HHHHHHHHHH
Q ss_conf 897-7999999998
Q gi|254780694|r 186 LTG-REVECLTWIS 198 (246)
Q Consensus 186 LT~-RE~eVl~lia 198 (246)
+++ +..+++..+-
T Consensus 232 ~~~~~~~~~~~~l~ 245 (260)
T 2o0y_A 232 FTEDRTPHYIECTR 245 (260)
T ss_dssp SCTTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
T ss_conf 89989999999999
No 172
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli}
Probab=84.13 E-value=0.092 Score=28.79 Aligned_cols=44 Identities=14% Similarity=0.186 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHHHHCC--CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 88897799999999859--997999999499988999999999998
Q gi|254780694|r 184 FELTGREVECLTWISEG--KTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 184 ~~LT~RE~eVl~lia~G--~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
..|-+--++|++.+.+- .|+.+||+.+++|+.||...++++..+
T Consensus 9 ~~lD~~D~~Il~~L~~d~R~s~~~IA~~lg~S~~tV~~Ri~rL~~~ 54 (163)
T 2gqq_A 9 KDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQ 54 (163)
T ss_dssp --CCSHHHHHHHHHHHCSSCCTTGGGTSSSCCTTTSSSTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 2244999999999998589999999999890999999999999957
No 173
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein structure initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=83.65 E-value=1.8 Score=20.43 Aligned_cols=18 Identities=6% Similarity=0.056 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHCCCE
Q ss_conf 999999999998719302
Q gi|254780694|r 43 VSWTMRMYALTEYVGASH 60 (246)
Q Consensus 43 ~~~~~~~~~~~~~~g~~~ 60 (246)
..+-+.+..+-+.+|..-
T Consensus 39 ~avS~~i~~LE~~lG~~L 56 (310)
T 2esn_A 39 SAFSHALGRLRQGLDDEL 56 (310)
T ss_dssp HHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHCCEE
T ss_conf 999999999999959948
No 174
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, MCSG, PSI, protein structure initiative, midwest center for structural genomics; 2.30A {Rhodococcus SP}
Probab=83.53 E-value=1.2 Score=21.67 Aligned_cols=26 Identities=8% Similarity=0.176 Sum_probs=10.3
Q ss_pred CCCHHH--HHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 889779--9999999859997999999499
Q gi|254780694|r 185 ELTGRE--VECLTWISEGKTSDEIAVILGI 212 (246)
Q Consensus 185 ~LT~RE--~eVl~lia~G~t~~eIA~~L~i 212 (246)
.+++-+ .+++..+-+ ..++|...||-
T Consensus 228 r~~~~~~~~~~~~~l~~--~a~~IS~~LG~ 255 (257)
T 2g7u_A 228 RNTPAQFREQAVPCVLA--AAAALSADMGF 255 (257)
T ss_dssp TCCHHHHHHHHHHHHHH--HHHHHHHHTTC
T ss_pred HCCHHHHHHHHHHHHHH--HHHHHHHHHCC
T ss_conf 38988999999999997--48999997289
No 175
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, protein structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=83.46 E-value=1.7 Score=20.61 Aligned_cols=13 Identities=15% Similarity=0.141 Sum_probs=6.8
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 8897799999999
Q gi|254780694|r 185 ELTGREVECLTWI 197 (246)
Q Consensus 185 ~LT~RE~eVl~li 197 (246)
.+++.-+..++++
T Consensus 282 ~~~~~~~~fi~~l 294 (306)
T 3fzv_A 282 QLTKPARLFVDYC 294 (306)
T ss_dssp CCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
T ss_conf 8999999999999
No 176
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=83.24 E-value=1.3 Score=21.30 Aligned_cols=39 Identities=26% Similarity=0.292 Sum_probs=27.5
Q ss_pred CCCHHH-HHHHHHHHCC--CCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 889779-9999999859--99799999949998899999999
Q gi|254780694|r 185 ELTGRE-VECLTWISEG--KTSDEIAVILGISRNTVNNYIAS 223 (246)
Q Consensus 185 ~LT~RE-~eVl~lia~G--~t~~eIA~~L~iS~~TV~~hl~~ 223 (246)
.||..| .+|+..+-.| .+..+||...+|+..||+..+++
T Consensus 7 ~~t~~~K~~vi~~~~~~~~~~~~~iAk~fgv~~sTi~~~~k~ 48 (131)
T 1hlv_A 7 QLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKN 48 (131)
T ss_dssp CCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 189999999999999778888999999989199999999924
No 177
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=82.31 E-value=2.1 Score=20.10 Aligned_cols=43 Identities=16% Similarity=0.196 Sum_probs=35.1
Q ss_pred CCCCCCHHHHHHHHHHH-CCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 88888977999999998-59997999999499988999999999
Q gi|254780694|r 182 KDFELTGREVECLTWIS-EGKTSDEIAVILGISRNTVNNYIASI 224 (246)
Q Consensus 182 ~~~~LT~RE~eVl~lia-~G~t~~eIA~~L~iS~~TV~~hl~~i 224 (246)
+...||..|+.-+.-+. -|.|--|||+.+.-|.+-|+.|+++=
T Consensus 2 R~~~L~~~e~aqlDVm~~L~~slhemaR~i~rSR~~ir~Yl~~P 45 (51)
T 1tc3_C 2 RGSALSDTERAQLDVMKLLNVSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp CSCCCCHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCH
T ss_conf 72043078999889999948769999999988599999995692
No 178
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=82.01 E-value=2 Score=20.17 Aligned_cols=45 Identities=22% Similarity=0.358 Sum_probs=38.1
Q ss_pred CCCCCHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 88889779999999985--9997999999499988999999999998
Q gi|254780694|r 183 DFELTGREVECLTWISE--GKTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 183 ~~~LT~RE~eVl~lia~--G~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
..+||..+..||..+++ |.|-.+||+.++++..||...++++-.|
T Consensus 24 ~~glt~~q~~vL~~l~~~~~~t~~~La~~l~i~~~~vs~~v~~L~~~ 70 (144)
T 1lj9_A 24 ELSLTRGQYLYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLEEQ 70 (144)
T ss_dssp GGTCTTTHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 77989999999999984899799999999897888999999999968
No 179
>3bqy_A Putative TETR family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.95A {Streptomyces coelicolor A3}
Probab=81.39 E-value=0.92 Score=22.36 Aligned_cols=12 Identities=17% Similarity=-0.030 Sum_probs=4.2
Q ss_pred HHHCCCCHHHHH
Q ss_conf 998599979999
Q gi|254780694|r 196 WISEGKTSDEIA 207 (246)
Q Consensus 196 lia~G~t~~eIA 207 (246)
......+...++
T Consensus 166 ~~l~~~~~~~l~ 177 (209)
T 3bqy_A 166 EAVAAGTYPHLA 177 (209)
T ss_dssp HHCCTTTCHHHH
T ss_pred HHHCCCCCHHHH
T ss_conf 752556468999
No 180
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein structure initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=81.09 E-value=1.1 Score=21.83 Aligned_cols=38 Identities=24% Similarity=0.220 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 889779999999985999799999949998899999999
Q gi|254780694|r 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 (246)
Q Consensus 185 ~LT~RE~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~ 223 (246)
..|+.+..-++ -..|+|-++.|+.|+||.+||..+=+.
T Consensus 89 ~~~~e~i~~~R-~~~glsQ~~lA~~lGvs~~ti~~~E~G 126 (170)
T 2auw_A 89 EVSHEMFGDWM-HRNNLSLTTAAEALGISRRMVSYYRTA 126 (170)
T ss_dssp CCCHHHHHHHH-HHTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCCHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 68899999999-986999999999959999999999779
No 181
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=80.69 E-value=2.2 Score=19.88 Aligned_cols=34 Identities=29% Similarity=0.415 Sum_probs=17.3
Q ss_pred HHHHHHHHHHCC-CCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 799999999859-9979999994999889999999
Q gi|254780694|r 189 REVECLTWISEG-KTSDEIAVILGISRNTVNNYIA 222 (246)
Q Consensus 189 RE~eVl~lia~G-~t~~eIA~~L~iS~~TV~~hl~ 222 (246)
|-+.||.++|+| +|..-|++.|++|..-.+.-+.
T Consensus 12 r~~~il~lladgCktts~I~~~Lg~sh~~A~~~ly 46 (165)
T 2vxz_A 12 RLRDILALLADGCKTTSLIQQRLGLSHGRAKALIY 46 (165)
T ss_dssp HHHHHHHHHTTCCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 99999999975450899999982650899999999
No 182
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=80.33 E-value=1 Score=22.10 Aligned_cols=37 Identities=16% Similarity=0.169 Sum_probs=29.3
Q ss_pred HHHHHHHH--------CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 99999998--------59997999999499988999999999998
Q gi|254780694|r 191 VECLTWIS--------EGKTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 191 ~eVl~lia--------~G~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
.++.+++. +|.+..+||..||||+.|+..-++..-..
T Consensus 13 ~~AV~lv~e~~~~~~s~g~~~~~va~~Lgi~~~tl~~Wv~~~~~~ 57 (108)
T 2rn7_A 13 QRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHERD 57 (108)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 999999998543455455519999999797999999999997230
No 183
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=80.12 E-value=2.2 Score=19.89 Aligned_cols=44 Identities=18% Similarity=0.184 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHH---------HCCCCHHHHHHHHHHC
Q ss_conf 9997999999499988999999999998---------0799889999999975
Q gi|254780694|r 200 GKTSDEIAVILGISRNTVNNYIASIMRK---------TATKTRSGAIAYAVRN 243 (246)
Q Consensus 200 G~t~~eIA~~L~iS~~TV~~hl~~i~~K---------Lgv~~R~eav~~A~~~ 243 (246)
-.|.++||..+|+|+.||..-++...++ +-+.|..++...|-+.
T Consensus 177 ~lt~~~LA~~lgisr~tvsR~l~~L~~~giI~~~~~~i~I~d~~~L~~~a~~~ 229 (250)
T 3e6c_C 177 PLSQKSIGEITGVHHVTVSRVLASLKRENILDKKKNKIIVYNLGELKHLSEQT 229 (250)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSSEEEESCHHHHHHHHTSS
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCEEEECCHHHHHHHHCCC
T ss_conf 86899999897999999999999999889899649999987899999987575
No 184
>2vke_A Tetracycline repressor protein class D; transcription, metal-binding, helix-turn-helix, transcription regulator, transcription regulation; HET: TAC; 1.62A {Escherichia coli} SCOP: a.4.1.9 a.121.1.1 PDB: 1bjy_A* 1bj0_A 1du7_A* 1ork_A* 2fj1_A* 1bjz_A* 2o7o_A* 2tct_A* 2trt_A* 1qpi_A* 1a6i_A 2vkv_A* 3fk7_A* 3fk6_A* 2ns7_A 2ns8_A
Probab=79.81 E-value=1.1 Score=21.75 Aligned_cols=16 Identities=6% Similarity=0.067 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHC
Q ss_conf 8899999999999807
Q gi|254780694|r 214 RNTVNNYIASIMRKTA 229 (246)
Q Consensus 214 ~~TV~~hl~~i~~KLg 229 (246)
+..++..+..+..+|.
T Consensus 186 ~~~l~~~L~Gl~a~~~ 201 (207)
T 2vke_A 186 LHGLESLIRGFEVQLT 201 (207)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999999998
No 185
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=79.70 E-value=1.8 Score=20.55 Aligned_cols=40 Identities=18% Similarity=0.260 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHHH---------HCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 88897799999999---------85999799999949998899999999
Q gi|254780694|r 184 FELTGREVECLTWI---------SEGKTSDEIAVILGISRNTVNNYIAS 223 (246)
Q Consensus 184 ~~LT~RE~eVl~li---------a~G~t~~eIA~~L~iS~~TV~~hl~~ 223 (246)
-.||+-+.|+.+-+ ..|+|-+++|+.+|+|..||..+.++
T Consensus 5 ~~~~~~~~~~~~rLk~l~~~~r~e~Glsq~elA~~~Gis~~tis~~e~G 53 (236)
T 3bdn_A 5 KPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNG 53 (236)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHTTTTTCCSHHHHHHHTSCHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 9899999999999999999999983999999999979799999888728
No 186
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=78.89 E-value=1.5 Score=21.09 Aligned_cols=10 Identities=20% Similarity=0.175 Sum_probs=3.9
Q ss_pred HHHHHHHHCC
Q ss_conf 9999999859
Q gi|254780694|r 191 VECLTWISEG 200 (246)
Q Consensus 191 ~eVl~lia~G 200 (246)
..++..+..|
T Consensus 210 ~~~l~~~l~G 219 (231)
T 2zcx_A 210 NRVLGALLRG 219 (231)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 187
>1z05_A Transcriptional regulator, ROK family; structural genomics, PSI, protein structure initiative; 2.00A {Vibrio cholerae o1 biovar eltor str} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=78.41 E-value=2.6 Score=19.47 Aligned_cols=16 Identities=13% Similarity=0.150 Sum_probs=7.3
Q ss_pred CCCCHHHHHHHHHHHCCC
Q ss_conf 888977999999998599
Q gi|254780694|r 184 FELTGREVECLTWISEGK 201 (246)
Q Consensus 184 ~~LT~RE~eVl~lia~G~ 201 (246)
..+|-+ ++++...+|-
T Consensus 316 ~~~~~~--~i~~~a~~gD 331 (429)
T 1z05_A 316 EEISIE--DICAAAADGD 331 (429)
T ss_dssp SSCCHH--HHHHHHHTTC
T ss_pred CCCCHH--HHHHHHHCCC
T ss_conf 338999--9999998398
No 188
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=78.09 E-value=2.8 Score=19.22 Aligned_cols=37 Identities=16% Similarity=0.191 Sum_probs=18.0
Q ss_pred HHHHHHHHHHH----CC-CCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 77999999998----59-997999999499988999999999
Q gi|254780694|r 188 GREVECLTWIS----EG-KTSDEIAVILGISRNTVNNYIASI 224 (246)
Q Consensus 188 ~RE~eVl~lia----~G-~t~~eIA~~L~iS~~TV~~hl~~i 224 (246)
+|=.+++.+|- +. .|..++|..+++|++|.....+..
T Consensus 3 ~ri~~~~~~i~~~~~~~~~~l~~lA~~~~~s~~~l~r~fk~~ 44 (107)
T 2k9s_A 3 NRVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQ 44 (107)
T ss_dssp HHHHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 899999999997567999799999999892999999999999
No 189
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B*
Probab=77.76 E-value=2.6 Score=19.42 Aligned_cols=38 Identities=16% Similarity=0.106 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 889779999999985999799999949998899999999
Q gi|254780694|r 185 ELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 (246)
Q Consensus 185 ~LT~RE~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~ 223 (246)
.++|.|..-++. ..|+|-+++|..|++|..|+..+-+.
T Consensus 70 ~~~~e~ir~~R~-~~glsQ~elA~~lg~~~~ti~~~E~G 107 (133)
T 3o9x_A 70 TVAPEFIVKVRK-KLSLTQKEASEIFGGGVNAFSRYEKG 107 (133)
T ss_dssp TCCHHHHHHHHH-HTTCCHHHHHHHHCSCTTHHHHHHHT
T ss_pred CCCHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 899999999999-84999999999959999999999869
No 190
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=77.39 E-value=3 Score=19.10 Aligned_cols=45 Identities=20% Similarity=0.338 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 8897799999999-85999799999949998899999999999807
Q gi|254780694|r 185 ELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 185 ~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
.++++=.+|.+.+ .+|++..++|..+|+|...|..-+++++.-+.
T Consensus 18 ~~~~~t~~iAr~VLV~G~~~~evA~~~Glskq~V~~~V~rv~~~~~ 63 (101)
T 2w7n_A 18 EVGQQTIEIARGVLVDGKPQATFATSLGLTRGAVSQAVHRVWAAFE 63 (101)
T ss_dssp CCCHHHHHHHHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 5218999999999848840999999968038899999999999987
No 191
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=77.37 E-value=2.1 Score=20.01 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=23.5
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 985999799999949998899999999
Q gi|254780694|r 197 ISEGKTSDEIAVILGISRNTVNNYIAS 223 (246)
Q Consensus 197 ia~G~t~~eIA~~L~iS~~TV~~hl~~ 223 (246)
...|+|-+++|+.|+||+.||..+-++
T Consensus 33 ~~~glTq~elA~~lgvs~~tis~~E~G 59 (111)
T 3mlf_A 33 TDYGLTQKELGDLFKVSSRTIQNMEKD 59 (111)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHHHC
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 985999999999969899999999849
No 192
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=76.89 E-value=1.8 Score=20.45 Aligned_cols=45 Identities=11% Similarity=0.124 Sum_probs=30.4
Q ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf 9985999799999949998899999999999807998899999999758
Q gi|254780694|r 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 (246)
Q Consensus 196 lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~G 244 (246)
....|+|-+++|..++||+.||..+.+.- ...+-..+..+|...|
T Consensus 19 R~~~gltq~~lA~~~gvs~~~i~~~E~g~----~~ps~~~l~~la~~l~ 63 (77)
T 2b5a_A 19 RTQKGVSQEELADLAGLHRTYISEVERGD----RNISLINIHKICAALD 63 (77)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHTTC----SCCBHHHHHHHHHHTT
T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHCCC----CCCCHHHHHHHHHHHC
T ss_conf 99819999999989796999999998799----8999999999999979
No 193
>3dew_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=76.20 E-value=1.7 Score=20.66 Aligned_cols=12 Identities=8% Similarity=0.185 Sum_probs=6.0
Q ss_pred HHHHHHHHCCCC
Q ss_conf 999999985999
Q gi|254780694|r 191 VECLTWISEGKT 202 (246)
Q Consensus 191 ~eVl~lia~G~t 202 (246)
.+.+.++.+|..
T Consensus 187 ~~~~~~~l~gl~ 198 (206)
T 3dew_A 187 RQYVAIFTRGIM 198 (206)
T ss_dssp HHHHHHHHHCSC
T ss_pred HHHHHHHHHHHC
T ss_conf 999999997728
No 194
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcriptional regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=76.08 E-value=0.44 Score=24.43 Aligned_cols=12 Identities=8% Similarity=-0.244 Sum_probs=4.7
Q ss_pred CCHHHHHHHHHH
Q ss_conf 897799999999
Q gi|254780694|r 186 LTGREVECLTWI 197 (246)
Q Consensus 186 LT~RE~eVl~li 197 (246)
.++.....+.++
T Consensus 278 ~~~~~~~~~~~~ 289 (312)
T 2h9b_A 278 ESTYIYSLYETI 289 (312)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
T ss_conf 998999999999
No 195
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum sensing, DNA-binding; 2.30A {Xanthomonas campestris PV}
Probab=76.07 E-value=2.7 Score=19.37 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999799999949998899999999999
Q gi|254780694|r 200 GKTSDEIAVILGISRNTVNNYIASIMR 226 (246)
Q Consensus 200 G~t~~eIA~~L~iS~~TV~~hl~~i~~ 226 (246)
.+|.++||..+++|+.||..-++...+
T Consensus 187 ~lt~~~lA~~lg~sr~tv~R~l~~l~~ 213 (230)
T 3iwz_A 187 RVSRQELARLVGCSREMAGRVLKKLQA 213 (230)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 789999999979989999999999997
No 196
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, protein structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=76.00 E-value=3.2 Score=18.86 Aligned_cols=13 Identities=0% Similarity=0.102 Sum_probs=4.1
Q ss_pred HHHHHHHHHHHHC
Q ss_conf 9999999999807
Q gi|254780694|r 217 VNNYIASIMRKTA 229 (246)
Q Consensus 217 V~~hl~~i~~KLg 229 (246)
|+..+...++.+|
T Consensus 194 ~~~av~~fL~~~g 206 (221)
T 3c2b_A 194 AKKAVVAFLTLYG 206 (221)
T ss_dssp HHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999999858
No 197
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=75.98 E-value=3.2 Score=18.85 Aligned_cols=55 Identities=18% Similarity=0.161 Sum_probs=35.9
Q ss_pred CCHHHHHHHHH---------HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf 89779999999---------985999799999949998899999999999807998899999999758
Q gi|254780694|r 186 LTGREVECLTW---------ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 (246)
Q Consensus 186 LT~RE~eVl~l---------ia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~G 244 (246)
+|+.+.+..+- -..|+|-+++|..+|||..+|..+.++- ...+-..+...|.-.|
T Consensus 7 ~~~~~~~~~~~l~~~l~~~R~~~glTQ~~lA~~lgis~~~is~~E~G~----~~~s~~~l~~la~~l~ 70 (92)
T 1lmb_3 7 LTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGI----NALNAYNAALLAKILK 70 (92)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTS----SCCCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCC----CCCCHHHHHHHHHHHC
T ss_conf 998999999999999999999929999999998847898999997799----8999999999999989
No 198
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. RHA1, structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=75.85 E-value=1.9 Score=20.29 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=11.0
Q ss_pred CCCHHH--HHHHHHHHCCCC
Q ss_conf 889779--999999985999
Q gi|254780694|r 185 ELTGRE--VECLTWISEGKT 202 (246)
Q Consensus 185 ~LT~RE--~eVl~lia~G~t 202 (246)
.+|+.| ..++.++-+|+.
T Consensus 181 ~~~~~~~~~~~~~~~l~Gl~ 200 (204)
T 2ibd_A 181 SVTVDTVAKQYLSIVLDGLA 200 (204)
T ss_dssp SSCHHHHHHHHHHHHHHCSB
T ss_pred CCCHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999998827
No 199
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=75.77 E-value=1.8 Score=20.54 Aligned_cols=10 Identities=10% Similarity=0.112 Sum_probs=4.1
Q ss_pred HHHHHHCCCC
Q ss_conf 9999985999
Q gi|254780694|r 193 CLTWISEGKT 202 (246)
Q Consensus 193 Vl~lia~G~t 202 (246)
+++++..|..
T Consensus 201 ~~~ll~~Gl~ 210 (218)
T 3gzi_A 201 NTRLLQRGLM 210 (218)
T ss_dssp HHHHHHHHHB
T ss_pred HHHHHHHHCC
T ss_conf 9999997669
No 200
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structural genomics, PSI; NMR {Pyrococcus furiosus dsm 3638} SCOP: a.4.5.82
Probab=75.76 E-value=1.4 Score=21.26 Aligned_cols=44 Identities=20% Similarity=0.206 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHCC----CHHHHHHHHHHHHHHHC
Q ss_conf 897799999999859997999999499----98899999999999807
Q gi|254780694|r 186 LTGREVECLTWISEGKTSDEIAVILGI----SRNTVNNYIASIMRKTA 229 (246)
Q Consensus 186 LT~RE~eVl~lia~G~t~~eIA~~L~i----S~~TV~~hl~~i~~KLg 229 (246)
=|.||+=+-.|.-.-+|..|||..|++ +++-|..|+..|-+-+.
T Consensus 10 ~T~RerIi~lL~~~~~s~~eia~~l~l~~~~~~k~v~~hL~Hiaks~k 57 (105)
T 2gmg_A 10 ATRREKIIELLLEGDYSPSELARILDMRGKGSKKVILEDLKVISKIAK 57 (105)
T ss_dssp HHHHHHHHHHTTTSCBCTTHHHHSSCCCSSCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 239999999998399999999999576655527899999999997662
No 201
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} SCOP: a.4.1.9 a.121.1.1 PDB: 3loc_A*
Probab=75.65 E-value=2 Score=20.24 Aligned_cols=10 Identities=30% Similarity=0.255 Sum_probs=4.2
Q ss_pred HHHHHHHCCC
Q ss_conf 9999998599
Q gi|254780694|r 192 ECLTWISEGK 201 (246)
Q Consensus 192 eVl~lia~G~ 201 (246)
.+..++.+|.
T Consensus 200 ~~~~~il~Gl 209 (212)
T 1pb6_A 200 NVQRIIIEGI 209 (212)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHHHHHC
T ss_conf 9999999775
No 202
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=75.27 E-value=1.1 Score=21.75 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=18.6
Q ss_pred CHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9799999949998899999999
Q gi|254780694|r 202 TSDEIAVILGISRNTVNNYIAS 223 (246)
Q Consensus 202 t~~eIA~~L~iS~~TV~~hl~~ 223 (246)
+-+++|+.+++|++||...++.
T Consensus 4 Nk~qlA~~fgVS~~TI~~W~~~ 25 (68)
T 1j9i_A 4 NKKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp EHHHHHHHTTCCHHHHHHHTTT
T ss_pred CHHHHHHHHCCCHHHHHHHHHC
T ss_conf 8999999979888999999987
No 203
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA- binding, nucleotide-binding, transcription; HET: CMP; 1.66A {Escherichia coli k-12} PDB: 3fwe_A 1g6n_A* 2cgp_A* 3hif_A 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 1hw5_A* 1ruo_A* 1i6x_A* 1cgp_A* 1o3t_A* ...
Probab=75.23 E-value=2.9 Score=19.14 Aligned_cols=27 Identities=33% Similarity=0.442 Sum_probs=22.9
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 997999999499988999999999998
Q gi|254780694|r 201 KTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 201 ~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
.|..+||..|++|+.||..-++...++
T Consensus 218 lt~~~LA~~lG~sr~tvsR~l~~L~~~ 244 (260)
T 3kcc_A 218 ITRQEIGQIVGCSRETVGRILKMLEDQ 244 (260)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 899999999799899999999999979
No 204
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=75.03 E-value=3.4 Score=18.70 Aligned_cols=26 Identities=15% Similarity=0.311 Sum_probs=22.7
Q ss_pred HCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 85999799999949998899999999
Q gi|254780694|r 198 SEGKTSDEIAVILGISRNTVNNYIAS 223 (246)
Q Consensus 198 a~G~t~~eIA~~L~iS~~TV~~hl~~ 223 (246)
..|+|-+++|..+|+|..||..+.++
T Consensus 23 ~~gltq~elA~~lgvs~~~is~~E~G 48 (80)
T 3kz3_A 23 ELGLSYESVADKMGMGQSAVAALFNG 48 (80)
T ss_dssp HHTCCHHHHHHHTTSCHHHHHHHHTT
T ss_pred HCCCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 93999999966209889889999879
No 205
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis nctc 9343}
Probab=74.87 E-value=2.2 Score=19.91 Aligned_cols=29 Identities=21% Similarity=0.291 Sum_probs=24.7
Q ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99859997999999499988999999999
Q gi|254780694|r 196 WISEGKTSDEIAVILGISRNTVNNYIASI 224 (246)
Q Consensus 196 lia~G~t~~eIA~~L~iS~~TV~~hl~~i 224 (246)
.-..|+|-+++|..+|+|..||..+.++.
T Consensus 19 r~~~gltq~~lA~~~gvs~~tis~~e~g~ 47 (76)
T 3bs3_A 19 LAEKQRTNRWLAEQMGKSENTISRWCSNK 47 (76)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHTTS
T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHCCC
T ss_conf 99909989999999888999999998599
No 206
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=74.58 E-value=3.5 Score=18.62 Aligned_cols=42 Identities=14% Similarity=0.074 Sum_probs=28.0
Q ss_pred HCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf 8599-9799999949998899999999999807998899999999758
Q gi|254780694|r 198 SEGK-TSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 (246)
Q Consensus 198 a~G~-t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~G 244 (246)
+.|. |-+|.|+.++||..||..+.++- .....-+...|...|
T Consensus 17 ~~g~~sq~eLA~~lGvs~stis~~e~~~-----~~p~~~l~~ia~~~g 59 (189)
T 2fjr_A 17 AYGFSQKIQLANHFDIASSSLSNRYTRG-----AISYDFAAHCALETG 59 (189)
T ss_dssp HHTCSSHHHHHHHTTCCHHHHHHHHHSS-----SCCHHHHHHHHHHHC
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHCC-----CCCHHHHHHHHHHHC
T ss_conf 8299879999999797999999998289-----997789999998809
No 207
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=74.57 E-value=0.79 Score=22.78 Aligned_cols=38 Identities=13% Similarity=0.232 Sum_probs=34.3
Q ss_pred HHHHHHHHCCCCHHHHHHHHCCCH------------HHHHHHHHHHHHHH
Q ss_conf 999999985999799999949998------------89999999999980
Q gi|254780694|r 191 VECLTWISEGKTSDEIAVILGISR------------NTVNNYIASIMRKT 228 (246)
Q Consensus 191 ~eVl~lia~G~t~~eIA~~L~iS~------------~TV~~hl~~i~~KL 228 (246)
-++++++-+|+|-.||++.+.+.+ .||++++++||.+.
T Consensus 370 Dqtlr~~N~G~t~~EI~e~i~LP~~l~~~~~~~~~YG~~~~~vraiy~~y 419 (658)
T 2cfu_A 370 DQTLHLANQGVTIGQVHNRLRLPPSLDQEWYDRGYHGSVSHNARAVLNRY 419 (658)
T ss_dssp HHHHHHHTTTCCTTTGGGTCCCCHHHHTCGGGSCSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99999998799999998624089656527321201674124599999984
No 208
>2fmy_A COOA, carbon monoxide oxidation system transcription regulator COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=74.53 E-value=3 Score=19.09 Aligned_cols=27 Identities=33% Similarity=0.621 Sum_probs=23.4
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999799999949998899999999999
Q gi|254780694|r 200 GKTSDEIAVILGISRNTVNNYIASIMR 226 (246)
Q Consensus 200 G~t~~eIA~~L~iS~~TV~~hl~~i~~ 226 (246)
..|.++||..+++|+.||...++...+
T Consensus 167 ~lt~~~lA~~lg~sr~tvsr~l~~l~~ 193 (220)
T 2fmy_A 167 GLNTEEIALMLGTTRQTVSVLLNDFKK 193 (220)
T ss_dssp SSCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 724999999979999999999999998
No 209
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=74.40 E-value=3.6 Score=18.60 Aligned_cols=11 Identities=0% Similarity=0.045 Sum_probs=3.8
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999998
Q gi|254780694|r 44 SWTMRMYALTE 54 (246)
Q Consensus 44 ~~~~~~~~~~~ 54 (246)
.+...+.++.+
T Consensus 40 sv~~~l~~L~~ 50 (230)
T 1fx7_A 40 TVSQTVSRMER 50 (230)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999988
No 210
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=74.36 E-value=2 Score=20.18 Aligned_cols=20 Identities=15% Similarity=0.478 Sum_probs=12.5
Q ss_pred CCCCCHHHHHHHHHHHCCCC
Q ss_conf 88889779999999985999
Q gi|254780694|r 183 DFELTGREVECLTWISEGKT 202 (246)
Q Consensus 183 ~~~LT~RE~eVl~lia~G~t 202 (246)
...+.+.=.++++++..|+.
T Consensus 188 ~~~~~~~~~~~v~~~l~Gl~ 207 (208)
T 3cwr_A 188 AWDIAPRVADAVRLIAPGRE 207 (208)
T ss_dssp SSCCHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999835278
No 211
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii atcc 33406}
Probab=74.14 E-value=2.4 Score=19.71 Aligned_cols=12 Identities=0% Similarity=-0.092 Sum_probs=5.8
Q ss_pred HHHHHHHCCCCH
Q ss_conf 999999859997
Q gi|254780694|r 192 ECLTWISEGKTS 203 (246)
Q Consensus 192 eVl~lia~G~t~ 203 (246)
.++.++.+|...
T Consensus 194 ~~~~~~l~g~~~ 205 (216)
T 3f0c_A 194 KVAGMFLKEIQT 205 (216)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHCCC
T ss_conf 999999977168
No 212
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D
Probab=74.05 E-value=3.6 Score=18.54 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=6.9
Q ss_pred HHHHHHHHCCCHHHHHHHHHH
Q ss_conf 799999949998899999999
Q gi|254780694|r 203 SDEIAVILGISRNTVNNYIAS 223 (246)
Q Consensus 203 ~~eIA~~L~iS~~TV~~hl~~ 223 (246)
+.+||..|++|+.||...+++
T Consensus 25 ~~dlA~~L~vs~~sv~~~lk~ 45 (142)
T 1on2_A 25 VSDIAEALAVHPSSVTKMVQK 45 (142)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999969887899999999
No 213
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=74.00 E-value=2.3 Score=19.85 Aligned_cols=29 Identities=24% Similarity=0.265 Sum_probs=18.4
Q ss_pred CCCHHHHHHHH----HHHCCCCHHHHHHHHCCC
Q ss_conf 88977999999----998599979999994999
Q gi|254780694|r 185 ELTGREVECLT----WISEGKTSDEIAVILGIS 213 (246)
Q Consensus 185 ~LT~RE~eVl~----lia~G~t~~eIA~~L~iS 213 (246)
.-|+...+-+. +-..|.|-++|...|..+
T Consensus 40 ~Y~~~~v~~l~~I~~lr~~G~sl~ei~~~l~~~ 72 (109)
T 1r8d_A 40 LYSDADLERLQQILFFKEIGFRLDEIKEMLDHP 72 (109)
T ss_dssp EBCHHHHHHHHHHHHHHHTTCCHHHHHHHHHCT
T ss_pred ECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC
T ss_conf 066999999999999999699999999998355
No 214
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA- binding, transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=73.71 E-value=2 Score=20.24 Aligned_cols=10 Identities=10% Similarity=0.179 Sum_probs=3.5
Q ss_pred CCCHHHHHHH
Q ss_conf 9997999999
Q gi|254780694|r 200 GKTSDEIAVI 209 (246)
Q Consensus 200 G~t~~eIA~~ 209 (246)
|.|.++|...
T Consensus 59 G~sL~eIk~~ 68 (142)
T 3gp4_A 59 GLSIEALIDY 68 (142)
T ss_dssp TCCHHHHHHH
T ss_pred CCCHHHHHHH
T ss_conf 9989999999
No 215
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=73.69 E-value=2.5 Score=19.58 Aligned_cols=10 Identities=20% Similarity=0.112 Sum_probs=3.9
Q ss_pred HHHHHHHCCC
Q ss_conf 9999998599
Q gi|254780694|r 192 ECLTWISEGK 201 (246)
Q Consensus 192 eVl~lia~G~ 201 (246)
+++..+-+|+
T Consensus 180 ~~v~~~l~gl 189 (192)
T 2fq4_A 180 DLVINAFEGI 189 (192)
T ss_dssp HHHHHHHHCS
T ss_pred HHHHHHHHHC
T ss_conf 9999999761
No 216
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=73.61 E-value=3.7 Score=18.47 Aligned_cols=46 Identities=17% Similarity=0.210 Sum_probs=33.9
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
Q ss_conf 9859997999999499988999999999998079988999999997589
Q gi|254780694|r 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 (246)
Q Consensus 197 ia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~Gl 245 (246)
-..|+|-.|+|..+++|..||....+. |..-.+-..+..+|-..|+
T Consensus 28 ~~~glTQ~elA~~~gvs~~~is~iE~G---~~~~~s~~~L~~ia~aLg~ 73 (83)
T 2a6c_A 28 RNSGLTQFKAAELLGVTQPRVSDLMRG---KIDLFSLESLIDMITSIGL 73 (83)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHHHHHTT---CGGGCCHHHHHHHHHHTTC
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHCC---CCCCCCHHHHHHHHHHHCC
T ss_conf 995999999999987789999999879---9999899999999999299
No 217
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=73.51 E-value=2.7 Score=19.37 Aligned_cols=16 Identities=0% Similarity=-0.120 Sum_probs=7.9
Q ss_pred CCCHHHHHHHHHHCCC
Q ss_conf 9988999999997589
Q gi|254780694|r 230 TKTRSGAIAYAVRNNI 245 (246)
Q Consensus 230 v~~R~eav~~A~~~Gl 245 (246)
..+..+...+..+.|+
T Consensus 316 ~~t~~e~~~ll~~aGf 331 (352)
T 3mcz_A 316 LHPTPWIAGVVRDAGL 331 (352)
T ss_dssp CCCHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHCCC
T ss_conf 2899999999997799
No 218
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=73.38 E-value=2 Score=20.24 Aligned_cols=44 Identities=32% Similarity=0.253 Sum_probs=30.1
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf 985999799999949998899999999999807998899999999758
Q gi|254780694|r 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 (246)
Q Consensus 197 ia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~G 244 (246)
-..|+|-+++|..+|||+.||..+.+.- ...+-..+...|-..|
T Consensus 19 ~~~~lsq~elA~~lgvs~~~is~~e~G~----~~ps~~~l~~la~~l~ 62 (94)
T 2kpj_A 19 AKSEKTQLEIAKSIGVSPQTFNTWCKGI----AIPRMGKVQALADYFN 62 (94)
T ss_dssp TTSSSCHHHHHHHHTCCHHHHHHHHTTS----CCCCHHHHHHHHHHHT
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHCCC----CCCCHHHHHHHHHHHC
T ss_conf 9949989999998892883699997376----7999999999999989
No 219
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=73.38 E-value=2.5 Score=19.55 Aligned_cols=28 Identities=32% Similarity=0.413 Sum_probs=22.1
Q ss_pred CCHHHHHHHHC-----CCHHHHHHHHHHHHHHHCCCC
Q ss_conf 99799999949-----998899999999999807998
Q gi|254780694|r 201 KTSDEIAVILG-----ISRNTVNNYIASIMRKTATKT 232 (246)
Q Consensus 201 ~t~~eIA~~L~-----iS~~TV~~hl~~i~~KLgv~~ 232 (246)
+|+.+|+..|. ||.+||-.|.. +||..+
T Consensus 38 lSD~~i~~~L~~~Gi~IaRRTVaKYR~----~L~Ips 70 (76)
T 2ahq_A 38 YSDQEIANILKEKGFKVARRTVAKYRE----MLGIPS 70 (76)
T ss_dssp CCHHHHHHHHTTTSSCCCHHHHHHHHH----HTC---
T ss_pred CCHHHHHHHHHHCCCCEEHHHHHHHHH----HCCCCC
T ss_conf 769999999998699553161999999----809996
No 220
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=73.31 E-value=2.5 Score=19.55 Aligned_cols=18 Identities=17% Similarity=0.145 Sum_probs=10.0
Q ss_pred CCHHHHHHHHHHHCCCCH
Q ss_conf 897799999999859997
Q gi|254780694|r 186 LTGREVECLTWISEGKTS 203 (246)
Q Consensus 186 LT~RE~eVl~lia~G~t~ 203 (246)
+..--.+++.++..|...
T Consensus 213 ~~~~~~~~~~~l~~gl~a 230 (260)
T 2of7_A 213 LAELVDRALDALENGLPA 230 (260)
T ss_dssp HHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHCCC
T ss_conf 999999999999976526
No 221
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=73.11 E-value=2.6 Score=19.50 Aligned_cols=13 Identities=8% Similarity=-0.215 Sum_probs=4.1
Q ss_pred HHHHHHHHHHHHC
Q ss_conf 9999999998719
Q gi|254780694|r 45 WTMRMYALTEYVG 57 (246)
Q Consensus 45 ~~~~~~~~~~~~g 57 (246)
+......+....|
T Consensus 40 IL~AA~~l~~~~G 52 (221)
T 3g7r_A 40 LLGTATRIFYAEG 52 (221)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999999829
No 222
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=73.10 E-value=2.2 Score=19.94 Aligned_cols=43 Identities=16% Similarity=0.143 Sum_probs=30.1
Q ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 99859997999999499988999999999998079988999999997
Q gi|254780694|r 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 (246)
Q Consensus 196 lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~ 242 (246)
....|+|-+++|..|++|+.||..+.+... ..+-..+...|.-
T Consensus 17 r~~~g~tq~~lA~~lgis~~~is~~e~G~~----~p~~~~l~~ia~~ 59 (73)
T 3omt_A 17 LAEKGKTNLWLTETLDKNKTTVSKWCTNDV----QPSLETLFDIAEA 59 (73)
T ss_dssp HHHHTCCHHHHHHHTTCCHHHHHHHHTTSS----CCCHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHCCCC----CCCHHHHHHHHHH
T ss_conf 999399899999985998667899984988----9986799999999
No 223
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=73.04 E-value=2.9 Score=19.19 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=23.7
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 985999799999949998899999999
Q gi|254780694|r 197 ISEGKTSDEIAVILGISRNTVNNYIAS 223 (246)
Q Consensus 197 ia~G~t~~eIA~~L~iS~~TV~~hl~~ 223 (246)
-..|+|-++.|+.++||..||..+-+.
T Consensus 14 ~~~gltq~elA~~~Gis~~tis~~E~g 40 (99)
T 2l49_A 14 KSEYLSRQQLADLTGVPYGTLSYYESG 40 (99)
T ss_dssp HHTTCCHHHHHHHHCCCHHHHHHHTTT
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 993999999999969899999999879
No 224
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli CFT073} SCOP: a.35.1.3 PDB: 2icp_A
Probab=73.03 E-value=2.5 Score=19.62 Aligned_cols=45 Identities=20% Similarity=0.097 Sum_probs=29.8
Q ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf 9985999799999949998899999999999807998899999999758
Q gi|254780694|r 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 (246)
Q Consensus 196 lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~G 244 (246)
.-..|+|-.+.|..+|||..||..+.+.- ...+-..+...|.-.|
T Consensus 17 r~~~gltq~~lA~~lgvs~~~is~~e~G~----~~~s~~~~~~la~~lg 61 (94)
T 2ict_A 17 LDELNVSLREFARAMEIAPSTASRLLTGK----AALTPEMAIKLSVVIG 61 (94)
T ss_dssp HHHHTCCHHHHHHHHTCCHHHHHHHHHTS----SCCCHHHHHHHHHHTC
T ss_pred HHHCCCCHHHHHHHCCCCHHHHHHHHCCC----CCCCHHHHHHHHHHHC
T ss_conf 99969999999998496389986987276----4472999999999999
No 225
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TETR family, rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=72.89 E-value=3.8 Score=18.40 Aligned_cols=17 Identities=12% Similarity=0.180 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHCCC
Q ss_conf 89999999999980799
Q gi|254780694|r 215 NTVNNYIASIMRKTATK 231 (246)
Q Consensus 215 ~TV~~hl~~i~~KLgv~ 231 (246)
.+.+..+..++..+.+.
T Consensus 188 ~~~~~~~~~~~~~l~~p 204 (215)
T 2hku_A 188 YSLEEAVAVIFANLQIP 204 (215)
T ss_dssp CSHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHHCCCCC
T ss_conf 77999999998678897
No 226
>1utx_A CYLR2; DNA-binding protein, transcriptional repressor, regulation of cytolysin operon, helix-turn-helix; 1.90A {Enterococcus faecalis} SCOP: a.35.1.3 PDB: 2gzu_A
Probab=72.81 E-value=2.2 Score=19.88 Aligned_cols=44 Identities=23% Similarity=0.193 Sum_probs=31.2
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf 985999799999949998899999999999807998899999999758
Q gi|254780694|r 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 (246)
Q Consensus 197 ia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~G 244 (246)
...|+|-.+.|..+++|+.||..+-++- .-.+-..+...|.-.|
T Consensus 11 ~~~g~tq~~lA~~~gis~~~is~~e~g~----~~ps~~~l~~ia~~l~ 54 (66)
T 1utx_A 11 EKKKISQSELAALLEVSRQTINGIEKNK----YNPSLQLALKIAYYLN 54 (66)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHHTTS----CCCCHHHHHHHHHHTT
T ss_pred HHCCCCHHHHHHHCCCCHHHHHHHHCCC----CCCCHHHHHHHHHHHC
T ss_conf 9849999999887299899999998799----8999999999999989
No 227
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=72.76 E-value=2.3 Score=19.78 Aligned_cols=21 Identities=5% Similarity=-0.162 Sum_probs=9.4
Q ss_pred CHHHHHHHHHHHHHHHCCCEE
Q ss_conf 999999999999987193023
Q gi|254780694|r 41 CTVSWTMRMYALTEYVGASHF 61 (246)
Q Consensus 41 ~~~~~~~~~~~~~~~~g~~~~ 61 (246)
+...+......+....|+...
T Consensus 41 tR~~Il~Aa~~l~~e~G~~~~ 61 (225)
T 2id3_A 41 IREAVLLAAGDALAADGFDAL 61 (225)
T ss_dssp HHHHHHHHHHHHHHHHCGGGC
T ss_pred HHHHHHHHHHHHHHHHCCCCC
T ss_conf 999999999999998493407
No 228
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=72.74 E-value=2.2 Score=19.99 Aligned_cols=39 Identities=15% Similarity=0.082 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 8889779999999985999799999949998899999999
Q gi|254780694|r 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 (246)
Q Consensus 184 ~~LT~RE~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~ 223 (246)
..++|-+..-++ -..|+|-++.|..++||..||..+=+.
T Consensus 9 ~~~~p~~ik~~R-~~~gltQ~elA~~lgvs~~ti~~~E~G 47 (73)
T 3fmy_A 9 ETVAPEFIVKVR-KKLSLTQKEASEIFGGGVNAFSRYEKG 47 (73)
T ss_dssp CCCCHHHHHHHH-HHTTCCHHHHHHHHCSCTTHHHHHHTT
T ss_pred CCCCHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 215999999999-985999999999989799999999979
No 229
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=72.71 E-value=2.3 Score=19.77 Aligned_cols=13 Identities=0% Similarity=0.140 Sum_probs=4.6
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 9988999999999
Q gi|254780694|r 212 ISRNTVNNYIASI 224 (246)
Q Consensus 212 iS~~TV~~hl~~i 224 (246)
.++..+...+..+
T Consensus 184 ~~~e~~~~~~~~~ 196 (217)
T 3hta_A 184 YDEEYAREVLTRL 196 (217)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
T ss_conf 9999999999999
No 230
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding protein, helix-turn-helix, phosphotransferase system, metalloprotein; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=72.64 E-value=3.9 Score=18.33 Aligned_cols=10 Identities=10% Similarity=-0.057 Sum_probs=4.6
Q ss_pred HHHHHHHCCC
Q ss_conf 9999998599
Q gi|254780694|r 192 ECLTWISEGK 201 (246)
Q Consensus 192 eVl~lia~G~ 201 (246)
+++....+|-
T Consensus 299 ~l~~~~~~gd 308 (406)
T 1z6r_A 299 SLCQAALRGD 308 (406)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHCCC
T ss_conf 9999998699
No 231
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=72.63 E-value=2.5 Score=19.60 Aligned_cols=28 Identities=21% Similarity=0.165 Sum_probs=14.2
Q ss_pred CCHHHHHHHH----HHHCCCCHHHHHHHHCCC
Q ss_conf 8977999999----998599979999994999
Q gi|254780694|r 186 LTGREVECLT----WISEGKTSDEIAVILGIS 213 (246)
Q Consensus 186 LT~RE~eVl~----lia~G~t~~eIA~~L~iS 213 (246)
-|+...+.+. +-.-|.|-++|...|.-.
T Consensus 43 Yt~~dl~~l~~I~~lr~~G~sl~eIk~ll~~~ 74 (146)
T 3hh0_A 43 YTKDDLYVLQQIQSFKHLGFSLGEIQNIILQR 74 (146)
T ss_dssp BCHHHHHHHHHHHHHHHTTCCHHHHHHHHTSS
T ss_pred CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC
T ss_conf 68999999999999999699999999998745
No 232
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=72.56 E-value=2.9 Score=19.13 Aligned_cols=13 Identities=15% Similarity=0.199 Sum_probs=4.9
Q ss_pred HCCCCHHHHHHHH
Q ss_conf 8599979999994
Q gi|254780694|r 198 SEGKTSDEIAVIL 210 (246)
Q Consensus 198 a~G~t~~eIA~~L 210 (246)
.-|+|.++|...+
T Consensus 55 ~~G~sl~~I~~~l 67 (135)
T 1q06_A 55 QVGFNLEESGELV 67 (135)
T ss_dssp HTTCCHHHHHHHH
T ss_pred HCCCCHHHHHHHH
T ss_conf 8399999999998
No 233
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=72.53 E-value=3 Score=19.10 Aligned_cols=33 Identities=12% Similarity=0.185 Sum_probs=26.7
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9999999985999799999949998899999999
Q gi|254780694|r 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 (246)
Q Consensus 190 E~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~ 223 (246)
+..-++. ..|+|-++.|..++||..||..+=+.
T Consensus 34 ~ik~~R~-~~gltq~~lA~~lgvs~~ti~~~E~G 66 (99)
T 2ppx_A 34 RIKIIRR-ALKLTQEEFSARYHIPLGTLRDWEQG 66 (99)
T ss_dssp HHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 9999999-95999999999969889999999889
No 234
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structure initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=72.27 E-value=2.4 Score=19.70 Aligned_cols=31 Identities=10% Similarity=-0.051 Sum_probs=11.6
Q ss_pred HHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999985999799999949998899999999999
Q gi|254780694|r 194 LTWISEGKTSDEIAVILGISRNTVNNYIASIMR 226 (246)
Q Consensus 194 l~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~ 226 (246)
..++..+....+.....+ +.+++.-+..+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~--~~~l~~ll~Gl~~ 201 (213)
T 2g7g_A 171 TRALAAAPRGPERAEQAF--ELGLAALLAGFHH 201 (213)
T ss_dssp HHHHHHSCCTTHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCHHHHH--HHHHHHHHHHHHH
T ss_conf 999984435788879999--9999999999999
No 235
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural genomics, PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=72.26 E-value=2.8 Score=19.30 Aligned_cols=15 Identities=13% Similarity=-0.124 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHHCC
Q ss_conf 999999999987193
Q gi|254780694|r 44 SWTMRMYALTEYVGA 58 (246)
Q Consensus 44 ~~~~~~~~~~~~~g~ 58 (246)
.+......+...-|+
T Consensus 45 ~IldaA~~lf~~~G~ 59 (273)
T 3c07_A 45 LILETAMRLFQERGY 59 (273)
T ss_dssp HHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 999999999997294
No 236
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=72.24 E-value=3.5 Score=18.65 Aligned_cols=26 Identities=23% Similarity=0.370 Sum_probs=15.4
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99799999949998899999999999
Q gi|254780694|r 201 KTSDEIAVILGISRNTVNNYIASIMR 226 (246)
Q Consensus 201 ~t~~eIA~~L~iS~~TV~~hl~~i~~ 226 (246)
-+..+||..|++|+.||..-++++-.
T Consensus 55 vr~~dIA~~L~vs~~sVs~~l~~L~~ 80 (155)
T 2h09_A 55 ARQVDMAARLGVSQPTVAKMLKRLAT 80 (155)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 70999999969897899999999977
No 237
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP- binding proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=72.19 E-value=3.7 Score=18.45 Aligned_cols=27 Identities=33% Similarity=0.446 Sum_probs=22.7
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 997999999499988999999999998
Q gi|254780694|r 201 KTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 201 ~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
.|-++||..+++|+.||...+++..++
T Consensus 165 ~t~~~iA~~lg~sr~tvsr~l~~L~~~ 191 (207)
T 2oz6_A 165 ITRQEIGRIVGCSREMVGRVLKSLEEQ 191 (207)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 789999988799999999999999988
No 238
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=71.93 E-value=3.9 Score=18.32 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 9997999999499988999999999998
Q gi|254780694|r 200 GKTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 200 G~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
-.|..+||..+++|+.||..-++...++
T Consensus 193 ~lt~~~LA~~lGisr~tvsR~L~~L~~~ 220 (243)
T 3la7_A 193 KLSHQAIAEAIGSTRVTVTRLLGDLREK 220 (243)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 5259999888799999999999999978
No 239
>1mgt_A MGMT, protein (O6-methylguanine-DNA methyltransferase); DNA repair protein, suicidal enzyme, hyperthermostability; 1.80A {Thermococcus kodakarensis KOD1} SCOP: a.4.2.1 c.55.7.1
Probab=71.89 E-value=4.1 Score=18.23 Aligned_cols=40 Identities=23% Similarity=0.312 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHHH----CC--CCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 888977999999998----59--99799999949998899999999
Q gi|254780694|r 184 FELTGREVECLTWIS----EG--KTSDEIAVILGISRNTVNNYIAS 223 (246)
Q Consensus 184 ~~LT~RE~eVl~lia----~G--~t~~eIA~~L~iS~~TV~~hl~~ 223 (246)
.++|+-++.|.+.+. .| .|+.+||..++-+++.|-+.+++
T Consensus 87 ~g~t~Fq~~V~~~l~~~IP~G~v~TYg~iA~~~g~~~RaVG~a~~~ 132 (174)
T 1mgt_A 87 EGVTPFEKKVYEWLTKNVKRGSVITYGDLAKALNTSPRAVGGAMKR 132 (174)
T ss_dssp TTCCHHHHHHHHHHHHHSCTTCCEEHHHHHHHTTSCHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHCCCCCEECHHHHHHHCCCCCHHHHHHHHH
T ss_conf 7999899999999996689973576999998829870899999840
No 240
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=71.77 E-value=2.6 Score=19.49 Aligned_cols=42 Identities=21% Similarity=0.284 Sum_probs=34.5
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999985999799999949998899999999999807998
Q gi|254780694|r 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 (246)
Q Consensus 190 E~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~ 232 (246)
-.||.+|+.+|.|..+|-+.|+|+.+.|+.- ++|.+.+-..+
T Consensus 10 ~~eI~~Lm~~GYs~~~v~~AL~Ia~NniemA-~~ILrEF~~~s 51 (53)
T 2d9s_A 10 SSEIERLMSQGYSYQDIQKALVIAHNNIEMA-KNILREFSGPS 51 (53)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTTCHHHH-HHHHHHHTSCS
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHCCHHHH-HHHHHHHCCCC
T ss_conf 1899999985544999999999986119999-99999973546
No 241
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=71.60 E-value=3.1 Score=19.02 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=18.5
Q ss_pred CCCHHHHHHH----HHHHCCCCHHHHHHHHCCCHHHHH
Q ss_conf 8897799999----999859997999999499988999
Q gi|254780694|r 185 ELTGREVECL----TWISEGKTSDEIAVILGISRNTVN 218 (246)
Q Consensus 185 ~LT~RE~eVl----~lia~G~t~~eIA~~L~iS~~TV~ 218 (246)
.-|+...+-+ .+-..|.|-++|.+.|.-+...+.
T Consensus 39 ~Y~~~~~~~l~~I~~lr~~G~sl~eI~~~l~~~~~~~~ 76 (108)
T 2vz4_A 39 RYSDADLDRLQQILFYRELGFPLDEVAALLDDPAADPR 76 (108)
T ss_dssp EBCHHHHHHHHHHHHHHHTTCCHHHHHHHHTC-----C
T ss_pred EECHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHH
T ss_conf 47879899999999999969999999999827874499
No 242
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=71.30 E-value=4.2 Score=18.13 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=21.5
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 985999799999949998899999999
Q gi|254780694|r 197 ISEGKTSDEIAVILGISRNTVNNYIAS 223 (246)
Q Consensus 197 ia~G~t~~eIA~~L~iS~~TV~~hl~~ 223 (246)
-..|+|-++.|+.++||..||..+-++
T Consensus 19 ~~~gltq~elA~~~gvs~~~vs~~E~g 45 (114)
T 3op9_A 19 KEHGLKNHQIAELLNVQTRTVAYYMSG 45 (114)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHCCCCHHHHHHHHCCCCCHHHHHHCC
T ss_conf 985999999976108873279999658
No 243
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=70.99 E-value=2.7 Score=19.36 Aligned_cols=12 Identities=25% Similarity=0.050 Sum_probs=4.5
Q ss_pred CCHHHHHHHHHH
Q ss_conf 897799999999
Q gi|254780694|r 186 LTGREVECLTWI 197 (246)
Q Consensus 186 LT~RE~eVl~li 197 (246)
|||.-++.+.-+
T Consensus 198 lt~~~r~~~~~l 209 (228)
T 3nnr_A 198 LTPEYRERVLAL 209 (228)
T ss_dssp BCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
T ss_conf 899999999999
No 244
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structure initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=70.96 E-value=3.2 Score=18.93 Aligned_cols=20 Identities=15% Similarity=-0.122 Sum_probs=8.4
Q ss_pred CHHHHHHHHHHHHHHHCCCE
Q ss_conf 99999999999998719302
Q gi|254780694|r 41 CTVSWTMRMYALTEYVGASH 60 (246)
Q Consensus 41 ~~~~~~~~~~~~~~~~g~~~ 60 (246)
+...+......+....|+..
T Consensus 31 tr~~Il~AA~~l~~~~G~~~ 50 (222)
T 3bru_A 31 AHQSLIRAGLEHLTEKGYSS 50 (222)
T ss_dssp HHHHHHHHHHHHHHHSCTTT
T ss_pred HHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999859040
No 245
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=70.95 E-value=4.2 Score=18.13 Aligned_cols=30 Identities=33% Similarity=0.393 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf 9997999999499988999999999998079
Q gi|254780694|r 200 GKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 (246)
Q Consensus 200 G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv 230 (246)
.+|-.+||..||+|+.||...++.. +|-|.
T Consensus 163 ~lt~~~lA~~lg~sr~tvsr~l~~L-~~~g~ 192 (222)
T 1ft9_A 163 DFTVEEIANLIGSSRQTTSTALNSL-IKEGY 192 (222)
T ss_dssp CCCHHHHHHHHCSCHHHHHHHHHHH-HHTTS
T ss_pred CCHHHHHHHHHCCCHHHHHHHHHHH-HHCCC
T ss_conf 8469999999799899999999999-98899
No 246
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genomics, PSI-2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=70.87 E-value=2.9 Score=19.13 Aligned_cols=11 Identities=9% Similarity=0.223 Sum_probs=4.8
Q ss_pred HHHHHHHCCCC
Q ss_conf 99999985999
Q gi|254780694|r 192 ECLTWISEGKT 202 (246)
Q Consensus 192 eVl~lia~G~t 202 (246)
.++..+..|++
T Consensus 188 ~~~~~l~~gl~ 198 (207)
T 2rae_A 188 SGMQSLYDGLS 198 (207)
T ss_dssp HHHHHHHHCST
T ss_pred HHHHHHHHHCC
T ss_conf 99999997666
No 247
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, PSI; 1.90A {Porphyromonas gingivalis W83} SCOP: a.4.5.4 b.82.3.2
Probab=70.83 E-value=4.1 Score=18.22 Aligned_cols=26 Identities=8% Similarity=0.241 Sum_probs=22.8
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99799999949998899999999999
Q gi|254780694|r 201 KTSDEIAVILGISRNTVNNYIASIMR 226 (246)
Q Consensus 201 ~t~~eIA~~L~iS~~TV~~hl~~i~~ 226 (246)
.|.++||..+|+|+.||...++..-+
T Consensus 181 ~t~~~lA~~~G~sr~tvsr~l~~l~~ 206 (232)
T 2gau_A 181 LSREELATLSNMTVSNAIRTLSTFVS 206 (232)
T ss_dssp CCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 05999998879899999999999998
No 248
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=70.69 E-value=2.5 Score=19.59 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=24.8
Q ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9985999799999949998899999999
Q gi|254780694|r 196 WISEGKTSDEIAVILGISRNTVNNYIAS 223 (246)
Q Consensus 196 lia~G~t~~eIA~~L~iS~~TV~~hl~~ 223 (246)
....|+|-.++|..+++|..|+..+.++
T Consensus 10 R~~~gltq~elA~~~gis~~~~~~~e~g 37 (69)
T 1r69_A 10 RIQLGLNQAELAQKVGTTQQSIEQLENG 37 (69)
T ss_dssp HHHTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHCCCCHHHHHHHCCCCHHHHHHHHCC
T ss_conf 9994999999988639899999999869
No 249
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=70.63 E-value=4.3 Score=18.04 Aligned_cols=44 Identities=9% Similarity=0.106 Sum_probs=31.4
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf 985999799999949998899999999999807998899999999758
Q gi|254780694|r 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 (246)
Q Consensus 197 ia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~G 244 (246)
-..|+|-+++|+.+++|+.|+..+.+.- ...+...+...|...|
T Consensus 15 ~~~glsq~~la~~~gvs~~~i~~~e~g~----~~p~~~~l~~la~~l~ 58 (68)
T 2r1j_L 15 KKLKIRQAALGKMVGVSNVAISQWERSE----TEPNGENLLALSKALQ 58 (68)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHTTS----SCCBHHHHHHHHHHTT
T ss_pred HHCCCCHHHHHHHCCCCHHHHHHHHCCC----CCCCHHHHHHHHHHHC
T ss_conf 9859999999887399999999998799----8999999999999979
No 250
>3bjb_A Probable transcriptional regulator, TETR family protein; APC7331, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodococcus SP}
Probab=70.39 E-value=2.8 Score=19.23 Aligned_cols=14 Identities=0% Similarity=-0.121 Sum_probs=9.0
Q ss_pred HHHHHHHHCCCCHH
Q ss_conf 99999998599979
Q gi|254780694|r 191 VECLTWISEGKTSD 204 (246)
Q Consensus 191 ~eVl~lia~G~t~~ 204 (246)
.+++.++..|++++
T Consensus 192 ~~~~~~ll~~l~~r 205 (207)
T 3bjb_A 192 RRACDLLLVNLSHR 205 (207)
T ss_dssp HHHHHHHTTTCC--
T ss_pred HHHHHHHHHCCCCC
T ss_conf 99999998506457
No 251
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281, TETR transcriptional regulator, PSI-2; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=70.36 E-value=3.3 Score=18.79 Aligned_cols=21 Identities=14% Similarity=-0.023 Sum_probs=8.9
Q ss_pred CHHHHHHHHHHHHHHHCCCEE
Q ss_conf 999999999999987193023
Q gi|254780694|r 41 CTVSWTMRMYALTEYVGASHF 61 (246)
Q Consensus 41 ~~~~~~~~~~~~~~~~g~~~~ 61 (246)
+...+......+....|+..+
T Consensus 44 tr~~Il~AA~~l~~~~G~~~~ 64 (229)
T 3bni_A 44 RLTRILDACADLLDEVGYDAL 64 (229)
T ss_dssp HHHHHHHHHHHHHHHHCTTTC
T ss_pred HHHHHHHHHHHHHHHHCCCCC
T ss_conf 999999999999998490106
No 252
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, structural genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=70.32 E-value=2.8 Score=19.28 Aligned_cols=11 Identities=9% Similarity=0.027 Sum_probs=5.6
Q ss_pred HHHHHHHHCCC
Q ss_conf 99999998599
Q gi|254780694|r 191 VECLTWISEGK 201 (246)
Q Consensus 191 ~eVl~lia~G~ 201 (246)
.++++.+.+|+
T Consensus 186 ~~~i~~ll~~l 196 (198)
T 3cjd_A 186 KTMIRLLLEQV 196 (198)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHC
T ss_conf 99999999768
No 253
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, bacterial persistence, serine kinase, mercury derivative, SAD; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=69.88 E-value=4.5 Score=17.94 Aligned_cols=45 Identities=20% Similarity=0.241 Sum_probs=32.8
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
Q ss_conf 9859997999999499988999999999998079988999999997589
Q gi|254780694|r 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 (246)
Q Consensus 197 ia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~Gl 245 (246)
-..|+|-++.|..+|+|..||..+-+.. ...+-..+...|...|+
T Consensus 22 ~~~glsq~~lA~~~gvs~~~is~~E~g~----~~ps~~~l~~ia~~lgv 66 (88)
T 2wiu_B 22 QQNGWTQSELAKKIGIKQATISNFENNP----DNTTLTTFFKILQSLEL 66 (88)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHHCG----GGCBHHHHHHHHHHTTC
T ss_pred HHCCCCHHHHHHHCCCCHHHHHHHHCCC----CCCCHHHHHHHHHHHCC
T ss_conf 9859999999786399899999998799----99999999999999699
No 254
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=69.72 E-value=2.6 Score=19.43 Aligned_cols=35 Identities=9% Similarity=-0.005 Sum_probs=26.2
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHH-----------------HHHHHHHHCCC
Q ss_conf 985999799999949998899999-----------------99999980799
Q gi|254780694|r 197 ISEGKTSDEIAVILGISRNTVNNY-----------------IASIMRKTATK 231 (246)
Q Consensus 197 ia~G~t~~eIA~~L~iS~~TV~~h-----------------l~~i~~KLgv~ 231 (246)
...|+|-.++|..|+||..++... ++++-+-||+.
T Consensus 17 ~~~glS~~elA~~l~Is~~~l~~iE~g~~~~~~~~~~~~g~lr~ya~~Lgld 68 (112)
T 2wus_R 17 EERRITLLDASLFTNINPSKLKRIEEGDLKGLDAEVYIKSYIKRYSEFLELS 68 (112)
T ss_dssp HTTTCCHHHHHHHSSCCHHHHHHHHHTCCTTSSCHHHHHHHHHHHHHHSSCC
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 9969999999999856899999988789533765228999999999996979
No 255
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=69.03 E-value=2.6 Score=19.44 Aligned_cols=34 Identities=24% Similarity=0.278 Sum_probs=27.4
Q ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 9985999799999949998899999999999807
Q gi|254780694|r 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 196 lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
+.-...|-++||...+||+.|++...+.++..+.
T Consensus 155 ~~~~~~t~~~Ia~~~~vs~~TI~~~yk~l~~~~~ 188 (207)
T 1c9b_A 155 ASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAP 188 (207)
T ss_dssp TSSSCCCHHHHHHHHTCCHHHHHHHHHHHGGGHH
T ss_pred HHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 9789999999999979889999999999999998
No 256
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=68.99 E-value=3.6 Score=18.56 Aligned_cols=10 Identities=20% Similarity=0.421 Sum_probs=4.2
Q ss_pred HHHHHHHHCC
Q ss_conf 9999999859
Q gi|254780694|r 191 VECLTWISEG 200 (246)
Q Consensus 191 ~eVl~lia~G 200 (246)
.++...+..|
T Consensus 184 ~~~~~~l~~~ 193 (197)
T 2f07_A 184 KEIFTFLKRS 193 (197)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999988
No 257
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=68.82 E-value=4.7 Score=17.80 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=22.7
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99799999949998899999999999
Q gi|254780694|r 201 KTSDEIAVILGISRNTVNNYIASIMR 226 (246)
Q Consensus 201 ~t~~eIA~~L~iS~~TV~~hl~~i~~ 226 (246)
.|..+||..+++|+.||..-++...+
T Consensus 176 lt~~~iA~~lg~sr~tvsR~l~~l~~ 201 (231)
T 3e97_A 176 LGTQDIMARTSSSRETVSRVLKRLEA 201 (231)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 69999998869989999999999997
No 258
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=68.79 E-value=2.9 Score=19.17 Aligned_cols=28 Identities=21% Similarity=0.241 Sum_probs=25.0
Q ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9985999799999949998899999999
Q gi|254780694|r 196 WISEGKTSDEIAVILGISRNTVNNYIAS 223 (246)
Q Consensus 196 lia~G~t~~eIA~~L~iS~~TV~~hl~~ 223 (246)
....|+|-+|+|..++||+.||..+.++
T Consensus 12 r~~~gltq~elA~~~gis~~~is~~e~g 39 (71)
T 1zug_A 12 RIALKMTQTELATKAGVKQQSIQLIEAG 39 (71)
T ss_dssp HHHTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHCCCCHHHHHHHCCCCHHHHHHHHCC
T ss_conf 9993999999978419899999999879
No 259
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=68.70 E-value=3.3 Score=18.82 Aligned_cols=44 Identities=9% Similarity=0.106 Sum_probs=30.6
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf 985999799999949998899999999999807998899999999758
Q gi|254780694|r 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 (246)
Q Consensus 197 ia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~G 244 (246)
...|+|-++.|+.+++|..||..+.+.- ...+..-+...|...|
T Consensus 15 ~~~glsq~~la~~~gvs~~~i~~~e~G~----~~p~~~~l~~ia~~~~ 58 (76)
T 1adr_A 15 KKLKIRQAALGKMVGVSNVAISQWERSE----TEPNGENLLALSKALQ 58 (76)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHTTS----SCCCHHHHHHHHHHTT
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHCCC----CCCCHHHHHHHHHHHC
T ss_conf 9939999999999796999999998799----8999999999999969
No 260
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional activator, human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=68.67 E-value=4.8 Score=17.78 Aligned_cols=44 Identities=11% Similarity=-0.010 Sum_probs=29.9
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf 985999799999949998899999999999807998899999999758
Q gi|254780694|r 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 (246)
Q Consensus 197 ia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~G 244 (246)
-..|+|-+++|..++||..||..+.++. ...+-.-+..+|...|
T Consensus 38 ~~~glSq~~lA~~~gis~~~ls~~E~g~----~~ps~~~l~~ia~~l~ 81 (117)
T 3f52_A 38 ADKGVTLRELAEASRVSPGYLSELERGR----KEVSSELLASVCHALG 81 (117)
T ss_dssp HHHTCCHHHHHHHTTSCHHHHHHHHTTS----SCCCHHHHHHHHHHHT
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCCC----CCCCHHHHHHHHHHHC
T ss_conf 9819999999988533399999998699----8999999999999989
No 261
>2zdb_A Transcriptional regulator, CRP family; CAMP-binding domain, winged helix-turn-helix, thermus thermophilus DNA-binding, plasmid; 2.00A {Thermus thermophilus}
Probab=68.58 E-value=4.4 Score=17.97 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=23.2
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99799999949998899999999999
Q gi|254780694|r 201 KTSDEIAVILGISRNTVNNYIASIMR 226 (246)
Q Consensus 201 ~t~~eIA~~L~iS~~TV~~hl~~i~~ 226 (246)
.|..+||..|++|+.||..-++...+
T Consensus 140 lt~~~lA~~lg~sr~tvsR~l~~L~~ 165 (195)
T 2zdb_A 140 VSHEEIADATASIRESVSKVLADLRR 165 (195)
T ss_dssp CCHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 87999998879979999999999998
No 262
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=68.39 E-value=3.3 Score=18.79 Aligned_cols=27 Identities=15% Similarity=0.134 Sum_probs=22.5
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 997999999499988999999999998
Q gi|254780694|r 201 KTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 201 ~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
.|..+||..+++|..||...++...++
T Consensus 179 ~t~~~iA~~lgisr~tvsR~l~~L~~~ 205 (237)
T 3fx3_A 179 YDKMLIAGRLGMKPESLSRAFSRLKAA 205 (237)
T ss_dssp SCTHHHHHHTTCCHHHHHHHHHHHGGG
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 899999988699899999999999979
No 263
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=68.07 E-value=3.3 Score=18.79 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=15.7
Q ss_pred CCCHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 889779999999985999799999
Q gi|254780694|r 185 ELTGREVECLTWISEGKTSDEIAV 208 (246)
Q Consensus 185 ~LT~RE~eVl~lia~G~t~~eIA~ 208 (246)
.+.+-=..+..++..|+.+++=+.
T Consensus 177 ~~~~~~~~~~~~~l~gl~~~~g~~ 200 (206)
T 1vi0_A 177 DLVALSNSVLELLVSGIHNKEGGS 200 (206)
T ss_dssp CGGGGHHHHHHHHHHCSBCC----
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 999999999999997578999986
No 264
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=68.04 E-value=1.7 Score=20.62 Aligned_cols=37 Identities=27% Similarity=0.357 Sum_probs=30.6
Q ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 99999998599979999994999889999999999980
Q gi|254780694|r 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 191 ~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
.||.+|+.+|.|..+|-+.|.|+.+.|+.- ++|.+.+
T Consensus 13 ~eI~~Lm~~GYs~~dv~rAL~Ia~NniemA-~~ILrEF 49 (52)
T 2ooa_A 13 AKIAKLMGEGYAFEEVKRALEIAQNNVEVA-RSILREF 49 (52)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTCHHHH-HHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHCCHHHH-HHHHHHH
T ss_conf 799999986655999999999986229999-9999985
No 265
>3clc_A Regulatory protein; protein-DNA complex, transcriptional regulator, helix-turn- helix, DNA-bending, plasmid, transcription regulator/DNA complex; 2.80A {Enterobacter SP}
Probab=67.83 E-value=5 Score=17.67 Aligned_cols=44 Identities=11% Similarity=0.086 Sum_probs=30.8
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf 985999799999949998899999999999807998899999999758
Q gi|254780694|r 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 (246)
Q Consensus 197 ia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~G 244 (246)
-..|+|-+++|..+++|..||..+-+.- ...+-..+...|...|
T Consensus 21 ~~~glsq~~lA~~~gis~~~i~~~E~G~----~~ps~~~l~~la~~l~ 64 (82)
T 3clc_A 21 LEKGMTQEDLAYKSNLDRTYISGIERNS----RNLTIKSLELIMKGLE 64 (82)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHHTTC----CCCBHHHHHHHHHHHT
T ss_pred HHCCCCHHHHHHCCCCCHHHHHHHHCCC----CCCCHHHHHHHHHHHC
T ss_conf 9839999999570399887999998599----8999999999999979
No 266
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; 2.20A {Oenococcus oeni psu-1}
Probab=67.64 E-value=5 Score=17.64 Aligned_cols=10 Identities=30% Similarity=0.561 Sum_probs=3.4
Q ss_pred HHCCCCHHHH
Q ss_conf 9859997999
Q gi|254780694|r 197 ISEGKTSDEI 206 (246)
Q Consensus 197 ia~G~t~~eI 206 (246)
...|.+..+|
T Consensus 102 ~~~g~~~eei 111 (126)
T 3by6_A 102 IKSGVKGERI 111 (126)
T ss_dssp HHTTCCHHHH
T ss_pred HHCCCCHHHH
T ss_conf 9959899999
No 267
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3
Probab=67.27 E-value=3.6 Score=18.59 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=16.9
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 98599979999994999889999999
Q gi|254780694|r 197 ISEGKTSDEIAVILGISRNTVNNYIA 222 (246)
Q Consensus 197 ia~G~t~~eIA~~L~iS~~TV~~hl~ 222 (246)
-..|+|-.+.|..+|||+.|+..+.+
T Consensus 11 ~~~g~tq~~lA~~~Gvs~~~is~~E~ 36 (111)
T 1b0n_A 11 KEKGYSLSELAEKAGVAKSYLSSIER 36 (111)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf 98399999998784988999999987
No 268
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=67.22 E-value=3.7 Score=18.52 Aligned_cols=11 Identities=9% Similarity=0.250 Sum_probs=3.6
Q ss_pred HHHHHHHHHHH
Q ss_conf 88999999999
Q gi|254780694|r 214 RNTVNNYIASI 224 (246)
Q Consensus 214 ~~TV~~hl~~i 224 (246)
+.+++.-+..+
T Consensus 187 ~~~~~~lv~~~ 197 (214)
T 2zb9_A 187 DAFVTALVTNL 197 (214)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 269
>2gfn_A HTH-type transcriptional regulator PKSA related protein; transcriptional regulator TETR, PSI-2, regulatory protein, structural genomics; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=66.98 E-value=3.6 Score=18.60 Aligned_cols=12 Identities=8% Similarity=0.329 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q ss_conf 899999999999
Q gi|254780694|r 215 NTVNNYIASIMR 226 (246)
Q Consensus 215 ~TV~~hl~~i~~ 226 (246)
..+..++..+.+
T Consensus 187 ~~~~~~l~~~l~ 198 (209)
T 2gfn_A 187 DAAARCVDAAVR 198 (209)
T ss_dssp THHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999997
No 270
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=66.98 E-value=3.8 Score=18.41 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=22.5
Q ss_pred HCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 85999799999949998899999999
Q gi|254780694|r 198 SEGKTSDEIAVILGISRNTVNNYIAS 223 (246)
Q Consensus 198 a~G~t~~eIA~~L~iS~~TV~~hl~~ 223 (246)
..|+|-++.|..++||..||..+-++
T Consensus 47 ~kglTQ~eLA~~lgvs~~~is~~E~G 72 (107)
T 2jvl_A 47 EPTMTQAELGKEIGETAATVASYERG 72 (107)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHTTT
T ss_pred HCCCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 86998999999988789999999859
No 271
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=66.28 E-value=3.2 Score=18.86 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=21.7
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 98599979999994999889999999
Q gi|254780694|r 197 ISEGKTSDEIAVILGISRNTVNNYIA 222 (246)
Q Consensus 197 ia~G~t~~eIA~~L~iS~~TV~~hl~ 222 (246)
-..|+|-.+.|..||||+.|+...++
T Consensus 21 ~~~gisq~~LA~~lgvs~~~is~i~~ 46 (113)
T 2eby_A 21 EPLDLKINELAELLHVHRNSVSALIN 46 (113)
T ss_dssp TTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 76699999999996989999999993
No 272
>3g1l_A Transcriptional regulatory repressor protein (TETR-family) EThr; DNA-binding, transcription regulation; HET: RF2; 1.70A {Mycobacterium tuberculosis} PDB: 3g1o_A*
Probab=66.08 E-value=3.9 Score=18.32 Aligned_cols=14 Identities=14% Similarity=0.235 Sum_probs=5.3
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 99889999999999
Q gi|254780694|r 212 ISRNTVNNYIASIM 225 (246)
Q Consensus 212 iS~~TV~~hl~~i~ 225 (246)
++...+-.++.+++
T Consensus 214 ~~~~~~~~~l~~l~ 227 (256)
T 3g1l_A 214 VPEARVLDTLVHIW 227 (256)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
T ss_conf 99999999999999
No 273
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=66.05 E-value=4.1 Score=18.19 Aligned_cols=20 Identities=30% Similarity=0.356 Sum_probs=8.3
Q ss_pred HCCCCHHHHHHHHCCCHHHH
Q ss_conf 85999799999949998899
Q gi|254780694|r 198 SEGKTSDEIAVILGISRNTV 217 (246)
Q Consensus 198 a~G~t~~eIA~~L~iS~~TV 217 (246)
++|+|-.|+|..++||..++
T Consensus 14 ~~glSi~eva~~l~I~~~~l 33 (130)
T 3fym_A 14 RLGMTLTELEQRTGIKREML 33 (130)
T ss_dssp HTTCCHHHHHHHHCCCHHHH
T ss_pred HCCCCHHHHHHHHCCCHHHH
T ss_conf 96999999999975149999
No 274
>2ras_A Transcriptional regulator, TETR family; YP_495839.1, predicted transcriptional regulator of TETR/ACRR family; 1.80A {Novosphingobium aromaticivorans DSM12444}
Probab=65.91 E-value=2.3 Score=19.82 Aligned_cols=39 Identities=3% Similarity=0.072 Sum_probs=17.0
Q ss_pred HHHHHCCCCHHHHHHH--HCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999859997999999--49998899999999999807998
Q gi|254780694|r 194 LTWISEGKTSDEIAVI--LGISRNTVNNYIASIMRKTATKT 232 (246)
Q Consensus 194 l~lia~G~t~~eIA~~--L~iS~~TV~~hl~~i~~KLgv~~ 232 (246)
+..+..|......... -..+...++..+..++.-|....
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~~~~ 200 (212)
T 2ras_A 160 VNQMCAPYCALNTMTTFMERLSEDKLARIVDAVFDGLSAQD 200 (212)
T ss_dssp HHHHSGGGTSHHHHHHHGGGCCHHHHHHHHHHHHHHCCSSC
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999985145877799999999999998735788
No 275
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=65.86 E-value=5.4 Score=17.42 Aligned_cols=135 Identities=10% Similarity=-0.010 Sum_probs=74.2
Q ss_pred CHHHEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEECCCCC
Q ss_conf 10110002214458888765530232137999973279999999999999871930230002666311123210006895
Q gi|254780694|r 4 EIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWP 83 (246)
Q Consensus 4 ~~~~~~~~l~r~d~~r~~~v~~l~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~ 83 (246)
-+.+.+|++-.+++.-...+..++........+..+.+..+....+. .. .+.....+..+.+..+
T Consensus 2 ~ms~~RVLIVDD~~~~r~~l~~~L~~~~~~~vv~~a~~~~eal~~~~----~~-----------~pDlvllDi~mP~~~G 66 (153)
T 3cz5_A 2 SLSTARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYR----ET-----------TPDIVVMDLTLPGPGG 66 (153)
T ss_dssp --CCEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHH----TT-----------CCSEEEECSCCSSSCH
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH----CC-----------CCCEEEEECCCCCCCH
T ss_conf 98887799992999999999999985899189999899999999975----46-----------9968999645799878
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 899999996698451738999985232443032543333214457147503373689999999717875469899999
Q gi|254780694|r 84 FDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWE 161 (246)
Q Consensus 84 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (246)
.+..+........ .|+ ..............+...++.+|+.++.+......++..+..+....++.....
T Consensus 67 ~e~~~~ir~~~~~--~~i------ivlt~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~ai~~v~~g~~~~~~~~~~~ 136 (153)
T 3cz5_A 67 IEATRHIRQWDGA--ARI------LIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGRRAMSPDIAQE 136 (153)
T ss_dssp HHHHHHHHHHCTT--CCE------EEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTCCEECHHHHHH
T ss_pred HHHHHHHHHHCCC--CCE------EEEEEECCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 9999999985899--968------999814899999999986998389689999999999999984997799899999
No 276
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=65.63 E-value=5.5 Score=17.39 Aligned_cols=39 Identities=26% Similarity=0.366 Sum_probs=32.1
Q ss_pred HHHHHHHHH-HCC--CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 799999999-859--997999999499988999999999998
Q gi|254780694|r 189 REVECLTWI-SEG--KTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 189 RE~eVl~li-a~G--~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
.-..|+..+ ..| .+..+||..++++.+.|+..+..++..
T Consensus 19 ~a~~i~~~L~~~~~~l~ee~la~~~~i~~k~vR~iL~~L~~~ 60 (110)
T 1q1h_A 19 DVIDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQ 60 (110)
T ss_dssp TTHHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 899999999985887789999989499999999999999987
No 277
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=65.51 E-value=2.4 Score=19.70 Aligned_cols=14 Identities=7% Similarity=0.335 Sum_probs=5.9
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 99889999999999
Q gi|254780694|r 212 ISRNTVNNYIASIM 225 (246)
Q Consensus 212 iS~~TV~~hl~~i~ 225 (246)
+|+..+..++..+.
T Consensus 162 ~s~eei~~~~~~li 175 (177)
T 3kkc_A 162 MTVEDLLKYYLTMV 175 (177)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
T ss_conf 99999999999986
No 278
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus dk 1622}
Probab=65.45 E-value=2.6 Score=19.50 Aligned_cols=20 Identities=25% Similarity=0.325 Sum_probs=9.2
Q ss_pred CHHHHHHHHCCCHHHHHHHH
Q ss_conf 97999999499988999999
Q gi|254780694|r 202 TSDEIAVILGISRNTVNNYI 221 (246)
Q Consensus 202 t~~eIA~~L~iS~~TV~~hl 221 (246)
+-+|+|..++||++|+++|-
T Consensus 7 ~I~eva~~~gvs~~tlR~ye 26 (81)
T 2jml_A 7 RIRTIARMTGIREATLRAWE 26 (81)
T ss_dssp EHHHHHHTTSTTHHHHHHHH
T ss_pred EHHHHHHHHCCCHHHHHHHH
T ss_conf 59999999885999999999
No 279
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=65.12 E-value=4 Score=18.24 Aligned_cols=13 Identities=8% Similarity=-0.125 Sum_probs=4.1
Q ss_pred HHHHHHHHHHHHC
Q ss_conf 9999999998719
Q gi|254780694|r 45 WTMRMYALTEYVG 57 (246)
Q Consensus 45 ~~~~~~~~~~~~g 57 (246)
+......+....|
T Consensus 20 Il~aa~~l~~~~G 32 (194)
T 2q24_A 20 ILAAAVRVFSEEG 32 (194)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999999869
No 280
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Bacillus cereus atcc 14579} SCOP: a.4.1.17
Probab=64.97 E-value=5.6 Score=17.31 Aligned_cols=38 Identities=29% Similarity=0.441 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHHHH------C----CCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 888977999999998------5----9997999999499988999999
Q gi|254780694|r 184 FELTGREVECLTWIS------E----GKTSDEIAVILGISRNTVNNYI 221 (246)
Q Consensus 184 ~~LT~RE~eVl~lia------~----G~t~~eIA~~L~iS~~TV~~hl 221 (246)
..||...++-.++++ . -+|-++||+.+|||..|.-.-.
T Consensus 22 a~Lt~qQr~AA~llv~nEi~~~n~g~k~T~~eiAeEvGvsr~TLy~Wk 69 (155)
T 2ao9_A 22 QKLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWR 69 (155)
T ss_dssp TTSCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHH
T ss_conf 986099999999999875434677336479999999574699999886
No 281
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=64.78 E-value=5 Score=17.63 Aligned_cols=16 Identities=19% Similarity=0.250 Sum_probs=7.6
Q ss_pred CCHHH--HHHHHHHHCCC
Q ss_conf 89779--99999998599
Q gi|254780694|r 186 LTGRE--VECLTWISEGK 201 (246)
Q Consensus 186 LT~RE--~eVl~lia~G~ 201 (246)
+++.| ..++.++..|+
T Consensus 197 ~~~~~~~~~~~~~~l~gl 214 (218)
T 3dcf_A 197 LSADEVVEQITRLLLNGY 214 (218)
T ss_dssp SCHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHHHH
T ss_conf 999999999999999887
No 282
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor A3}
Probab=64.23 E-value=5.3 Score=17.49 Aligned_cols=44 Identities=11% Similarity=-0.047 Sum_probs=29.9
Q ss_pred HHCCCCHHHHHHHHC--CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf 985999799999949--998899999999999807998899999999758
Q gi|254780694|r 197 ISEGKTSDEIAVILG--ISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 (246)
Q Consensus 197 ia~G~t~~eIA~~L~--iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~G 244 (246)
...|+|-+|.|+.+| ||..|+..+-+.- ...+-..+...|...|
T Consensus 18 ~~~gltq~elA~~~g~~is~~~is~~E~G~----~~ps~~~l~~la~~l~ 63 (71)
T 2ewt_A 18 TQQGLSLHGVEEKSQGRWKAVVVGSYERGD----RAVTVQRLAELADFYG 63 (71)
T ss_dssp HHTTCCHHHHHHHTTTSSCHHHHHHHHHTC----SCCCHHHHHHHHHHHT
T ss_pred HHCCCCHHHHHHHHCCCCCHHHHHHHHCCC----CCCCHHHHHHHHHHHC
T ss_conf 884998999998988874799999998599----6676899999999989
No 283
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=63.56 E-value=6 Score=17.15 Aligned_cols=44 Identities=25% Similarity=0.302 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHC----------CCCHHHHHHHHHHCC
Q ss_conf 999799999949998899999999999807----------998899999999758
Q gi|254780694|r 200 GKTSDEIAVILGISRNTVNNYIASIMRKTA----------TKTRSGAIAYAVRNN 244 (246)
Q Consensus 200 G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg----------v~~R~eav~~A~~~G 244 (246)
..|.++||..|++|+.||...++... +.| +.|...+-.+|...|
T Consensus 146 ~~t~~~iA~~lg~sr~tv~r~l~~L~-~~g~I~~~~~~i~I~d~~~L~~~a~~~g 199 (202)
T 2zcw_A 146 KATHDELAAAVGSVRETVTKVIGELA-REGYIRSGYGKIQLLDLKGLKELAESRG 199 (202)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHH-HTTSEEEETTEEEESCHHHHHHHHTSCC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH-HCCCEEECCCEEEECCHHHHHHHHHHCC
T ss_conf 88799999897988999999999999-8899997499999988999999998628
No 284
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=63.44 E-value=5.4 Score=17.45 Aligned_cols=43 Identities=14% Similarity=0.090 Sum_probs=29.5
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC
Q ss_conf 98599979999994999889999999999980799889999999975
Q gi|254780694|r 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRN 243 (246)
Q Consensus 197 ia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~ 243 (246)
...|+|-+|.|..++||..||..+-++- ...+-.-+...|...
T Consensus 23 ~~~glsq~elA~~~gvs~~~is~~E~G~----~~p~~~~l~kia~~L 65 (91)
T 1x57_A 23 QSKGLTQKDLATKINEKPQVIADYESGR----AIPNNQVLGKIERAI 65 (91)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHHHHHHTC----SCCCHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHCCC----CCCCHHHHHHHHHHH
T ss_conf 9819989999987198999999998799----889999999999994
No 285
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=63.37 E-value=2 Score=20.23 Aligned_cols=40 Identities=25% Similarity=0.306 Sum_probs=32.5
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 79999999985999799999949998899999999999807
Q gi|254780694|r 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 189 RE~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
-..||.+|+.+|.|-.+|-+.|+|+.+.|+.- ++|.+.+-
T Consensus 4 ~~~eI~~Lm~~GYs~~~v~rAL~Ia~NniemA-~~ILrEF~ 43 (46)
T 2oo9_A 4 LSSEIENLMSQGYSYQDIQKALVIAQNNIEMA-KNILREFA 43 (46)
T ss_dssp HHHHHHHHHHTTBCHHHHHHHHHHTTTCHHHH-HHHHHHHC
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHH-HHHHHHHC
T ss_conf 03899999986776999999999986219999-99999871
No 286
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=63.21 E-value=6 Score=17.14 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=23.5
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 985999799999949998899999999
Q gi|254780694|r 197 ISEGKTSDEIAVILGISRNTVNNYIAS 223 (246)
Q Consensus 197 ia~G~t~~eIA~~L~iS~~TV~~hl~~ 223 (246)
...|+|-++.|+.+++|..||..+-++
T Consensus 20 ~~~gltq~elA~~~gvs~~~is~~E~G 46 (84)
T 2ef8_A 20 KEASLSQSELAIFLGLSQSDISKIESF 46 (84)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 994999999999974799999999879
No 287
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=61.95 E-value=5.3 Score=17.50 Aligned_cols=20 Identities=5% Similarity=-0.012 Sum_probs=8.6
Q ss_pred HHCCCHHHHHHHHHHHHHHH
Q ss_conf 94999889999999999980
Q gi|254780694|r 209 ILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 209 ~L~iS~~TV~~hl~~i~~KL 228 (246)
...-++.+.+..++.+.+.|
T Consensus 173 ~~~~d~~~~~~~~~~ll~~L 192 (194)
T 2g7s_A 173 RAHGDAATFGAITRPMLERI 192 (194)
T ss_dssp HSSCCTTHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC
T ss_conf 77399999999999999756
No 288
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=61.33 E-value=6.5 Score=16.89 Aligned_cols=44 Identities=14% Similarity=0.213 Sum_probs=31.9
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf 985999799999949998899999999999807998899999999758
Q gi|254780694|r 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 (246)
Q Consensus 197 ia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~G 244 (246)
...|+|-+++|..+++|..|+..+-+.- ...+-..+...|...|
T Consensus 23 ~~~gltq~~lA~~~gis~~~i~~~E~g~----~~p~~~~l~~ia~~l~ 66 (74)
T 1y7y_A 23 TAKGLSQETLAFLSGLDRSYVGGVERGQ----RNVSLVNILKLATALD 66 (74)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHTTC----SCCBHHHHHHHHHHTT
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHCCC----CCCCHHHHHHHHHHHC
T ss_conf 9819999999989697999999998799----8999999999999989
No 289
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomics; 1.80A {Silicibacter pomeroyi}
Probab=61.05 E-value=6.6 Score=16.86 Aligned_cols=37 Identities=19% Similarity=0.135 Sum_probs=26.7
Q ss_pred CHHHHHHHHH-----HHCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9779999999-----985999799999949998899999999
Q gi|254780694|r 187 TGREVECLTW-----ISEGKTSDEIAVILGISRNTVNNYIAS 223 (246)
Q Consensus 187 T~RE~eVl~l-----ia~G~t~~eIA~~L~iS~~TV~~hl~~ 223 (246)
||....+-+. ...|+|-++.|..+++|..||..+-+.
T Consensus 9 t~~~~~lg~~lk~~R~~~gltq~elA~~lgvs~~~is~~E~G 50 (86)
T 3eus_A 9 TPEHVYLCQRLRQARLDAGLTQADLAERLDKPQSFVAKVETR 50 (86)
T ss_dssp SHHHHHHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 979999999999999984999999999979699999999889
No 290
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=60.89 E-value=6.7 Score=16.84 Aligned_cols=26 Identities=15% Similarity=0.121 Sum_probs=22.7
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99799999949998899999999999
Q gi|254780694|r 201 KTSDEIAVILGISRNTVNNYIASIMR 226 (246)
Q Consensus 201 ~t~~eIA~~L~iS~~TV~~hl~~i~~ 226 (246)
+|..+||..|++|+.||..-++..-+
T Consensus 179 ~t~~~lA~~lg~sr~tv~r~l~~L~~ 204 (227)
T 3dkw_A 179 VAKQLVAGHLSIQPETFSRIMHRLGD 204 (227)
T ss_dssp SCTHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 05999988869989999999999997
No 291
>3dv8_A Transcriptional regulator, CRP/FNR family; RER070207001219, structural genomics, joint center for structural genomics, JCSG; 2.55A {Eubacterium rectale atcc 33656}
Probab=60.88 E-value=6.7 Score=16.84 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=23.3
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 997999999499988999999999998
Q gi|254780694|r 201 KTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 201 ~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
.|.++||..|++|+.||...++...++
T Consensus 170 ~t~~~lA~~lg~sr~tvsr~l~~L~~~ 196 (220)
T 3dv8_A 170 ITHETIANHLGSHREVITRMLRYFQVE 196 (220)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 999999999798999999999999988
No 292
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=60.46 E-value=6.8 Score=16.79 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=27.1
Q ss_pred CCCHHHHHHHHHH--HCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 8897799999999--8599979999994999889999999
Q gi|254780694|r 185 ELTGREVECLTWI--SEGKTSDEIAVILGISRNTVNNYIA 222 (246)
Q Consensus 185 ~LT~RE~eVl~li--a~G~t~~eIA~~L~iS~~TV~~hl~ 222 (246)
.+..-|++++... ..| +..+.|..|+||..|...-++
T Consensus 17 ~~~~~Ek~~I~~aL~~~g-~~~~aA~~Lgisr~tL~rKlk 55 (61)
T 1g2h_A 17 IIGFYEAQVLKLFYAEYP-STRKLAQRLGVSHTAIANKLK 55 (61)
T ss_dssp SCSHHHHHHHHHHHHHSC-SHHHHHHHTTSCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCC-CHHHHHHHHCCCHHHHHHHHH
T ss_conf 999999999999999968-999999997978999999999
No 293
>3cec_A Putative antidote protein of plasmid maintenance system; ZP_00107635.1, structural genomics, joint center for structural genomics; HET: MSE; 1.60A {Nostoc punctiforme pcc 73102}
Probab=60.33 E-value=5.7 Score=17.29 Aligned_cols=37 Identities=24% Similarity=0.215 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9779999999985999799999949998899999999
Q gi|254780694|r 187 TGREVECLTWISEGKTSDEIAVILGISRNTVNNYIAS 223 (246)
Q Consensus 187 T~RE~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~ 223 (246)
+|-|.=-=.+-..|+|-.+.|..++||+.|+..++++
T Consensus 18 hPGe~Lke~~~~~gisq~eLA~~lGvs~~~is~~e~G 54 (104)
T 3cec_A 18 HPGEVIADILDDLDINTANFAEILGVSNQTIQEVING 54 (104)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCCHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 8349999999987998999999978378999999758
No 294
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded) form, allostery, DNA binding; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3h3u_A*
Probab=60.27 E-value=6.8 Score=16.78 Aligned_cols=27 Identities=41% Similarity=0.556 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999799999949998899999999999
Q gi|254780694|r 200 GKTSDEIAVILGISRNTVNNYIASIMR 226 (246)
Q Consensus 200 G~t~~eIA~~L~iS~~TV~~hl~~i~~ 226 (246)
-.|-.+||..+++|+.||...+++..+
T Consensus 177 ~~t~~~lA~~lg~s~~tvsr~l~~L~~ 203 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVNKALADFAH 203 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 789999998879899999999999998
No 295
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=59.92 E-value=6.9 Score=16.74 Aligned_cols=45 Identities=16% Similarity=0.198 Sum_probs=31.1
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf 985999799999949998899999999999807998899999999758
Q gi|254780694|r 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 (246)
Q Consensus 197 ia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~G 244 (246)
-.+|+|-.+.|...|||..|+..+.++ |-.-.+...+...|.-.|
T Consensus 17 ~~~gls~~~LA~~~Gis~~tis~~e~g---~~~~p~~~~l~kia~~l~ 61 (78)
T 3b7h_A 17 TQQNLTINRVATLAGLNQSTVNAMFEG---RSKRPTITTIRKVCGTLG 61 (78)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHCT---TCCCCCHHHHHHHHHHHT
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHCC---CCCCCHHHHHHHHHHHHC
T ss_conf 993998999999889399999999869---988968999999999989
No 296
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=59.90 E-value=6.9 Score=16.73 Aligned_cols=45 Identities=16% Similarity=0.121 Sum_probs=31.6
Q ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf 9985999799999949998899999999999807998899999999758
Q gi|254780694|r 196 WISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 (246)
Q Consensus 196 lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~G 244 (246)
-...|+|-+++|..++||..|+..+-++- .-.+-..+..+|...|
T Consensus 77 R~~~glTQ~elA~~~gis~~~is~iE~G~----~~ps~~~l~kia~~lg 121 (141)
T 3kxa_A 77 RMKKGFTQSELATAAGLPQPYLSRIENSK----QSLQDKTVQKLANALG 121 (141)
T ss_dssp HHHTTCCHHHHHHHTTCCHHHHHHHHHTC----SCCCHHHHHHHHHHHT
T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHCCC----CCCCHHHHHHHHHHHC
T ss_conf 99829989999999896999999998799----7899999999999949
No 297
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=59.33 E-value=5.7 Score=17.28 Aligned_cols=132 Identities=8% Similarity=-0.080 Sum_probs=67.8
Q ss_pred HHHEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEECCCCCH
Q ss_conf 01100022144588887655302321379999732799999999999998719302300026663111232100068958
Q gi|254780694|r 5 IQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPF 84 (246)
Q Consensus 5 ~~~~~~~l~r~d~~r~~~v~~l~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~ 84 (246)
|...+|++..+++.-...+..++........+..+.+..+....+.. ..++.....+..+.+..+.
T Consensus 1 M~~~~VLIvDD~~~~r~~l~~~L~~~~~~~~v~~a~~~~eal~~l~~--------------~~~~DlvllD~~mP~~~G~ 66 (154)
T 2qsj_A 1 MSLTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEA--------------DNTVDLILLDVNLPDAEAI 66 (154)
T ss_dssp --CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHT--------------TCCCSEEEECC------CH
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH--------------CCCCCEEEECCCCCCCCHH
T ss_conf 99999999949999999999999728998499996689999999974--------------5999789980888998889
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 99999996698451738999985232443032543333214457147503373689999999717875469899
Q gi|254780694|r 85 DLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDR 158 (246)
Q Consensus 85 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (246)
+..+.+..... ..|+ ..................++.+|+.++.+......++..+..+....+...
T Consensus 67 e~l~~ir~~~p--~~~i------ivlT~~~~~~~~~~a~~~Ga~gyl~K~~~~~~L~~aI~~v~~g~~~~~~~~ 132 (154)
T 2qsj_A 67 DGLVRLKRFDP--SNAV------ALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGEIFLPRSY 132 (154)
T ss_dssp HHHHHHHHHCT--TSEE------EEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTCCBCCGGG
T ss_pred HHHHHHHHHCC--CCCE------EEEEEECCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCHHH
T ss_conf 99999998788--9979------999802899999999985998899799999999999999987998279999
No 298
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in europe; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=59.07 E-value=7.2 Score=16.64 Aligned_cols=15 Identities=20% Similarity=0.319 Sum_probs=7.6
Q ss_pred CCHHHHHHHHHHCCC
Q ss_conf 988999999997589
Q gi|254780694|r 231 KTRSGAIAYAVRNNI 245 (246)
Q Consensus 231 ~~R~eav~~A~~~Gl 245 (246)
++..|.-.+..+-|+
T Consensus 317 rt~~e~~~ll~~AGf 331 (374)
T 1qzz_A 317 RTRDEVVDLAGSAGL 331 (374)
T ss_dssp CCHHHHHHHHHTTTE
T ss_pred CCHHHHHHHHHHCCC
T ss_conf 899999999998699
No 299
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=57.97 E-value=2.2 Score=19.95 Aligned_cols=16 Identities=0% Similarity=0.175 Sum_probs=8.3
Q ss_pred CCCHHHHHHHHHHHHH
Q ss_conf 9998899999999999
Q gi|254780694|r 211 GISRNTVNNYIASIMR 226 (246)
Q Consensus 211 ~iS~~TV~~hl~~i~~ 226 (246)
.++...++..++++.+
T Consensus 217 ~~~~~~l~~~~~~~~~ 232 (237)
T 3kkd_A 217 QLAVDEMRAILRRYLN 232 (237)
T ss_dssp GCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
T ss_conf 8999999999999999
No 300
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum}
Probab=57.70 E-value=7.5 Score=16.50 Aligned_cols=11 Identities=9% Similarity=-0.043 Sum_probs=3.8
Q ss_pred CCCCHHHHHHH
Q ss_conf 59997999999
Q gi|254780694|r 199 EGKTSDEIAVI 209 (246)
Q Consensus 199 ~G~t~~eIA~~ 209 (246)
+..|-.++.+.
T Consensus 136 ~~~TL~dL~~~ 146 (162)
T 3k69_A 136 HQFTMADLQAD 146 (162)
T ss_dssp HTCBHHHHHHH
T ss_pred CCCCHHHHHHH
T ss_conf 17979999998
No 301
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=57.52 E-value=4.5 Score=17.93 Aligned_cols=37 Identities=11% Similarity=0.043 Sum_probs=29.9
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 7999999998599979999994999889999999999
Q gi|254780694|r 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIM 225 (246)
Q Consensus 189 RE~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~ 225 (246)
++.=+..|--+|.|-.+|+...|+|.+|+++-+.+=+
T Consensus 11 ~adI~AaL~krG~sLa~lsr~~Gls~~tl~nal~rp~ 47 (74)
T 1neq_A 11 RADVIAGLKKRKLSLSALSRQFGYAPTTLANALERHW 47 (74)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHHSSCHHHHHHTTTSSC
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCC
T ss_conf 9999999999689699999990998899999882778
No 302
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=57.50 E-value=7.6 Score=16.48 Aligned_cols=17 Identities=24% Similarity=0.263 Sum_probs=9.5
Q ss_pred CCCHHH-HHHHHHHHCCC
Q ss_conf 889779-99999998599
Q gi|254780694|r 185 ELTGRE-VECLTWISEGK 201 (246)
Q Consensus 185 ~LT~RE-~eVl~lia~G~ 201 (246)
..++.+ .++|+-+.+-+
T Consensus 261 ~~~d~~~~~iL~~~~~aL 278 (360)
T 1tw3_A 261 NWPDHDAVRILTRCAEAL 278 (360)
T ss_dssp GSCHHHHHHHHHHHHHTE
T ss_pred CCCHHHHHHHHHHHHHHH
T ss_conf 398799999999999971
No 303
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=57.48 E-value=6.6 Score=16.87 Aligned_cols=133 Identities=11% Similarity=-0.029 Sum_probs=67.1
Q ss_pred CCCCHHHEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEECC
Q ss_conf 97210110002214458888765530232137999973279999999999999871930230002666311123210006
Q gi|254780694|r 1 MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80 (246)
Q Consensus 1 ~~~~~~~~~~~l~r~d~~r~~~v~~l~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~ 80 (246)
|++...+.+|++-.+++.-...+............+..+.+..+....+.... .....++.....+..+..
T Consensus 1 m~~~~~~~~ILiVDD~~~~~~~l~~~L~~~g~~~~v~~a~~g~eAl~~l~~~~---------~~~~~~~dliilD~~mP~ 71 (143)
T 2qvg_A 1 MSLAADKVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRN---------KENKIHPKLILLDINIPK 71 (143)
T ss_dssp ------CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCT---------TCCCCCCSEEEEETTCTT
T ss_pred CCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH---------HHCCCCCCEEEECCCCCC
T ss_conf 99888899899997999999999999997699849999899999999998412---------330379878996487889
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 89589999999669845173899998523244303254333321445714750337368999999971
Q gi|254780694|r 81 DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLF 148 (246)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (246)
..+.+..+.+........-|++ .................++.+|+.++++.......+....
T Consensus 72 ~~G~el~~~ir~~~~~~~ipiI------~lS~~~~~~~~~~a~~~G~~~~l~KPv~~~~ll~~~~~~~ 133 (143)
T 2qvg_A 72 MNGIEFLKELRDDSSFTDIEVF------VLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQ 133 (143)
T ss_dssp SCHHHHHHHHTTSGGGTTCEEE------EEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCEEE------EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf 9727999999857777999199------9978899999999998799899989799999999999999
No 304
>2cmp_A G1P, terminase small subunit; DNA packaging, DNA binding domain; 1.58A {Bacteriophage SF6}
Probab=57.42 E-value=7.6 Score=16.47 Aligned_cols=49 Identities=18% Similarity=0.225 Sum_probs=39.4
Q ss_pred CCCCCCHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf 888889779999999-9859997999999499988999999999998079
Q gi|254780694|r 182 KDFELTGREVECLTW-ISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 (246)
Q Consensus 182 ~~~~LT~RE~eVl~l-ia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv 230 (246)
....||+++..-+.. +..|.+..+.|..=|.|+.|.+..-..++++-.|
T Consensus 5 k~~~LT~kQ~~F~~~yv~~~~n~t~Aa~~AGYs~~~a~~~as~Ll~~p~V 54 (63)
T 2cmp_A 5 KEPKLSPKQERFIEEYFINDMNATKAAIAAGYSKNSASAIGAENLQKPAI 54 (63)
T ss_dssp ---CCCHHHHHHHHHHHHTTTCHHHHHHHTTCCTTTHHHHHHHHHHSHHH
T ss_pred CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHCCHHH
T ss_conf 45332899999999999769989999999848806199999999775599
No 305
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, S-adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum tls} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=57.04 E-value=7.7 Score=16.43 Aligned_cols=17 Identities=0% Similarity=-0.257 Sum_probs=7.9
Q ss_pred CCHHH-HHHHHHHHCCCC
Q ss_conf 89779-999999985999
Q gi|254780694|r 186 LTGRE-VECLTWISEGKT 202 (246)
Q Consensus 186 LT~RE-~eVl~lia~G~t 202 (246)
.++.+ ..+|+-+.+-+.
T Consensus 269 ~~d~~~~~lL~~~~~~L~ 286 (359)
T 1x19_A 269 ANEQLSTIMCKKAFDAMR 286 (359)
T ss_dssp SCHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHHCC
T ss_conf 998999999999997308
No 306
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=56.56 E-value=4.1 Score=18.19 Aligned_cols=131 Identities=9% Similarity=-0.078 Sum_probs=67.5
Q ss_pred HHEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEECCCCCHH
Q ss_conf 11000221445888876553023213799997327999999999999987193023000266631112321000689589
Q gi|254780694|r 6 QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85 (246)
Q Consensus 6 ~~~~~~l~r~d~~r~~~v~~l~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 85 (246)
.+++|++..+++.-...+..+.........+..+.+..+....+.. ..+ .....+..+.+..+.+
T Consensus 14 ~~irVLIvDD~~~~r~~l~~~L~~~~~~~vv~~a~~~~eal~~~~~----~~p-----------DvvllDl~mp~~~G~e 78 (152)
T 3eul_A 14 EKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKA----HLP-----------DVALLDYRMPGMDGAQ 78 (152)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHH----HCC-----------SEEEEETTCSSSCHHH
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH----CCC-----------CEEEECCCCCCCCHHH
T ss_conf 9888999949999999999999859895799998999999999984----699-----------9999818999989999
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 99999966984517389999852324430325433332144571475033736899999997178754698999
Q gi|254780694|r 86 LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRL 159 (246)
Q Consensus 86 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (246)
+.+........ .++ ..................++.+|+.++...+....++..+..++...++...
T Consensus 79 l~~~ir~~~~~--~~v------ivlS~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~aI~~~~~g~~~~~~~~~ 144 (152)
T 3eul_A 79 VAAAVRSYELP--TRV------LLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRDVVAPSLV 144 (152)
T ss_dssp HHHHHHHTTCS--CEE------EEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHCCC--CEE------EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCHHHH
T ss_conf 99999975899--859------9996869999999999869989997999999999999999879997799999
No 307
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response element family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=56.51 E-value=7.9 Score=16.37 Aligned_cols=44 Identities=16% Similarity=0.124 Sum_probs=28.9
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf 985999799999949998899999999999807998899999999758
Q gi|254780694|r 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 (246)
Q Consensus 197 ia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~G 244 (246)
-..|+|-+++|..+++|..||..+-+. -...+-..+..+|.-.|
T Consensus 24 ~~~gltq~elA~~~gvs~~~is~~E~g----~~~~~~~~l~~la~~l~ 67 (83)
T 3f6w_A 24 SAAGITQKELAARLGRPQSFVSKTENA----ERRLDVIEFMDFCRGIG 67 (83)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHTT----SSCCCHHHHHHHHHHHT
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHCC----CCCCCHHHHHHHHHHHC
T ss_conf 982999999998973899999999879----98999999999999959
No 308
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=55.58 E-value=3.9 Score=18.31 Aligned_cols=18 Identities=17% Similarity=0.211 Sum_probs=11.3
Q ss_pred CCHHH-HHHHHHHHCCCCH
Q ss_conf 89779-9999999859997
Q gi|254780694|r 186 LTGRE-VECLTWISEGKTS 203 (246)
Q Consensus 186 LT~RE-~eVl~lia~G~t~ 203 (246)
.++.+ .+||+-+.+-+..
T Consensus 281 ~~d~~~~~iL~~~~~aL~p 299 (369)
T 3gwz_A 281 WDDDDVVRILRRIATAMKP 299 (369)
T ss_dssp SCHHHHHHHHHHHHTTCCT
T ss_pred CCHHHHHHHHHHHHHHCCC
T ss_conf 8828999999999996599
No 309
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=55.44 E-value=2.3 Score=19.78 Aligned_cols=40 Identities=23% Similarity=0.317 Sum_probs=32.6
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf 99999999859997999999499988999999999998079
Q gi|254780694|r 190 EVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 (246)
Q Consensus 190 E~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv 230 (246)
..||.+|+.+|.|-.+|-+.|+|+.+.|+.- ++|.+.+-.
T Consensus 8 ~~eI~~Lm~~GYs~~~v~rAL~Ia~NniemA-~~ILrEFvs 47 (56)
T 2juj_A 8 SSEIENLMSQGYSYQDIQKALVIAQNNIEMA-KNILREFVS 47 (56)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTTTCSHHH-HHHHHHSCC
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHCCHHHH-HHHHHHHCC
T ss_conf 2899999985544999999999987119999-999999826
No 310
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=54.48 E-value=2.7 Score=19.32 Aligned_cols=20 Identities=5% Similarity=0.084 Sum_probs=12.8
Q ss_pred CCCCHHHH--HHHHHHHCCCCH
Q ss_conf 88897799--999999859997
Q gi|254780694|r 184 FELTGREV--ECLTWISEGKTS 203 (246)
Q Consensus 184 ~~LT~RE~--eVl~lia~G~t~ 203 (246)
..+|+.|. .++.++..|..+
T Consensus 178 ~~~s~e~la~~~~~~~l~G~~~ 199 (203)
T 3ccy_A 178 GSVSPDALAERTVQLFLDGYLN 199 (203)
T ss_dssp SSSCHHHHHHHHHHHHHHCGGG
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999998
No 311
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=53.94 E-value=2.2 Score=19.94 Aligned_cols=35 Identities=9% Similarity=0.104 Sum_probs=28.9
Q ss_pred HHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 99985999799999949998899999999999807
Q gi|254780694|r 195 TWISEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 195 ~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
++.-...|-++||...++|+.|++...+.|+..+.
T Consensus 287 ~~~~~~~t~~~Ia~~~~vs~~TI~~~ykeL~~~~~ 321 (345)
T 3k7a_M 287 LLFQIPITAAKVGQTLQVTEGTIKSGYKILYEHRD 321 (345)
T ss_dssp -----------------------------------
T ss_pred HHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 99687989999998859879999999999999999
No 312
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=53.51 E-value=8.8 Score=16.06 Aligned_cols=18 Identities=17% Similarity=0.032 Sum_probs=7.9
Q ss_pred CHHHHHHHHHHHHHHHCC
Q ss_conf 999999999999987193
Q gi|254780694|r 41 CTVSWTMRMYALTEYVGA 58 (246)
Q Consensus 41 ~~~~~~~~~~~~~~~~g~ 58 (246)
...+..+.+.+..-..|+
T Consensus 50 ~~~~~l~rlLr~L~~~gi 67 (332)
T 3i53_A 50 AHADSLDRLLRHLVAVGL 67 (332)
T ss_dssp CCHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHCCE
T ss_conf 098999999999997896
No 313
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=52.95 E-value=9 Score=16.01 Aligned_cols=45 Identities=16% Similarity=0.112 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHHHHCCCC-----H----HHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 8889779999999985999-----7----9999994999889999999999980
Q gi|254780694|r 184 FELTGREVECLTWISEGKT-----S----DEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 184 ~~LT~RE~eVl~lia~G~t-----~----~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
..||+...+||+-.-.-.. + .+||..+++|...|++-..|-.+|.
T Consensus 12 ~~~~~~~~~~L~~~f~~~~~nPYPs~~ek~~La~~~gl~~~qV~~WF~N~R~R~ 65 (73)
T 1x2n_A 12 GVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRI 65 (73)
T ss_dssp CCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 979999999999999987427996999999999998819999899899999985
No 314
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=52.53 E-value=9.1 Score=15.96 Aligned_cols=46 Identities=17% Similarity=0.249 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHH-HHHCCC--------CHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 888977999999-998599--------9799999949998899999999999807
Q gi|254780694|r 184 FELTGREVECLT-WISEGK--------TSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 184 ~~LT~RE~eVl~-lia~G~--------t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
..+|+...+||+ |+.+.. .-.+||..+++|+..|++--.|...|..
T Consensus 6 ~~~s~~q~~~L~~~f~~~~~~pyP~~~~~~~La~~~gl~~~qV~~WF~N~R~r~k 60 (87)
T 1b72_B 6 RNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 60 (87)
T ss_dssp CCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999838889979999999999988298899899999998873
No 315
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=51.49 E-value=9.5 Score=15.86 Aligned_cols=35 Identities=23% Similarity=0.215 Sum_probs=18.8
Q ss_pred HHHHHHHHCC---CCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 9999999859---9979999994999889999999999980
Q gi|254780694|r 191 VECLTWISEG---KTSDEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 191 ~eVl~lia~G---~t~~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
..+..++.+| +|..+||...|.+-. .|..+.|+|.
T Consensus 57 ~~a~~lL~~~~~~~si~~Ia~~~Gf~~~---s~F~r~Fk~~ 94 (108)
T 3mn2_A 57 QHAHNLLSDGATPTTVTAAALSCGFSNL---GHFARDYRDM 94 (108)
T ss_dssp HHHHHHHHSSSSCCCHHHHHHHTTCCCH---HHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHCCCCH---HHHHHHHHHH
T ss_conf 9999998765888639999999289988---9999999998
No 316
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=51.24 E-value=2.6 Score=19.49 Aligned_cols=45 Identities=11% Similarity=0.132 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 888977999999998599979999994999889999999999980799
Q gi|254780694|r 184 FELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 (246)
Q Consensus 184 ~~LT~RE~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~ 231 (246)
..+|+.-++.++++++-++-..+........ +..++.++.++...
T Consensus 278 ~~~s~~~~~fi~~~~~~l~r~~~~~~~~~~~---~~~~~~~~~~~~~~ 322 (324)
T 1al3_A 278 TFLRSYMYDFIQRFAPHLTRDVVDTAVALRS---NEDIEAMFKDIKLP 322 (324)
T ss_dssp CCCCHHHHHHHHHHCTTCCHHHHHHHHHCCC---HHHHHHHHHHSCCC
T ss_pred CCCCHHHHHHHHHHHHHHCHHHHHHHHCCCC---HHHHHHHHCCCCCC
T ss_conf 8569999999999998747998987750799---79999875447889
No 317
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=51.04 E-value=9.6 Score=15.81 Aligned_cols=13 Identities=38% Similarity=0.577 Sum_probs=4.4
Q ss_pred HHHHHCCCHHHHH
Q ss_conf 9999499988999
Q gi|254780694|r 206 IAVILGISRNTVN 218 (246)
Q Consensus 206 IA~~L~iS~~TV~ 218 (246)
+|..+++|+.||+
T Consensus 43 La~~~~VSr~tVr 55 (125)
T 3neu_A 43 MGVKLAVNPNTVS 55 (125)
T ss_dssp HHHHHTCCHHHHH
T ss_pred HHHHHCCCHHHHH
T ss_conf 9999392889999
No 318
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=51.03 E-value=9.6 Score=15.81 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHC--------CCCHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 89779999999985--------99979999994999889999999999
Q gi|254780694|r 186 LTGREVECLTWISE--------GKTSDEIAVILGISRNTVNNYIASIM 225 (246)
Q Consensus 186 LT~RE~eVl~lia~--------G~t~~eIA~~L~iS~~TV~~hl~~i~ 225 (246)
|+++|+.|+..+.. ..+..+||..+++|...|+.-++.+.
T Consensus 26 l~~~e~~Ia~~iI~~LD~~GyL~~~~eeia~~l~~~~~~ve~vL~~lQ 73 (76)
T 2k9l_A 26 LEGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVEELEKVRQKVL 73 (76)
T ss_dssp CCTTSHHHHHHHHHHCTTSSTTCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 999999999999973597888188999999997909999999999986
No 319
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG; HET: MSE; 2.15A {Nostoc punctiforme pcc 73102}
Probab=50.65 E-value=9.8 Score=15.78 Aligned_cols=15 Identities=7% Similarity=-0.184 Sum_probs=6.6
Q ss_pred CCHHHHHHHHHHCCC
Q ss_conf 988999999997589
Q gi|254780694|r 231 KTRSGAIAYAVRNNI 245 (246)
Q Consensus 231 ~~R~eav~~A~~~Gl 245 (246)
.+..|.-.+..+.|+
T Consensus 301 ~t~~e~~~ll~~aGf 315 (335)
T 2r3s_A 301 YTFAEYESMFSNAGF 315 (335)
T ss_dssp CCHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHCCC
T ss_conf 999999999997799
No 320
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=50.50 E-value=7.9 Score=16.38 Aligned_cols=18 Identities=11% Similarity=-0.016 Sum_probs=8.4
Q ss_pred CHHHHHHHHHHHHHHHCC
Q ss_conf 999999999999987193
Q gi|254780694|r 41 CTVSWTMRMYALTEYVGA 58 (246)
Q Consensus 41 ~~~~~~~~~~~~~~~~g~ 58 (246)
...+..+.+.+.....|+
T Consensus 67 ~~~~~l~rlLr~L~~~Gl 84 (348)
T 3lst_A 67 TDADALRRVLRLLAVRDV 84 (348)
T ss_dssp CCHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHCCC
T ss_conf 098999999999997898
No 321
>3eup_A Transcriptional regulator, TETR family; structural genomics, PSI2, MCSG, protein structure initiative; 1.99A {Cytophaga hutchinsonii atcc 33406}
Probab=50.23 E-value=3.9 Score=18.34 Aligned_cols=15 Identities=7% Similarity=0.084 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHCC
Q ss_conf 999999999998079
Q gi|254780694|r 216 TVNNYIASIMRKTAT 230 (246)
Q Consensus 216 TV~~hl~~i~~KLgv 230 (246)
++..++.++..=+.+
T Consensus 187 ~~~~~l~~~l~gl~~ 201 (204)
T 3eup_A 187 YVFESLEDLIAGIEV 201 (204)
T ss_dssp HHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 999999999976371
No 322
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=49.99 E-value=10 Score=15.71 Aligned_cols=44 Identities=11% Similarity=0.086 Sum_probs=30.6
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf 985999799999949998899999999999807998899999999758
Q gi|254780694|r 197 ISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNN 244 (246)
Q Consensus 197 ia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~G 244 (246)
-..|+|-.++|..+++|+.||..+-++- .-.+-..+...|...|
T Consensus 38 ~~~glsq~elA~~~gis~~~is~iE~G~----~~ps~~~l~~ia~~l~ 81 (99)
T 3g5g_A 38 LEKGMTQEDLAYKSNLDRTYISGIERNS----RNLTIKSLELIMKGLE 81 (99)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHTTC----SCCBHHHHHHHHHHTT
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHCCC----CCCCHHHHHHHHHHHC
T ss_conf 9819999999999797898899998699----8999999999999969
No 323
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structural genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.4.5.4 b.82.3.2
Probab=49.66 E-value=10 Score=15.68 Aligned_cols=41 Identities=12% Similarity=0.183 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHC-----------CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 89779999999985-----------9997999999499988999999999998
Q gi|254780694|r 186 LTGREVECLTWISE-----------GKTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 186 LT~RE~eVl~lia~-----------G~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
.|.+++ |+.++.+ -.+..+||..+|+|+.||..-++....+
T Consensus 162 ~~~~~r-i~~~L~~~~~~~~~~~~~~~~~~~lA~~~g~sr~tv~R~L~~L~~~ 213 (232)
T 1zyb_A 162 LDLKSK-IIRFFLSHCEKPQGEKTFKVKMDDLARCLDDTRLNISKTLNELQDN 213 (232)
T ss_dssp CSHHHH-HHHHHHTTCSSSSSCEEEECCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCHHHH-HHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 899999-9999998603423343467899999989798999999999999988
No 324
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=49.55 E-value=10 Score=15.67 Aligned_cols=35 Identities=11% Similarity=0.110 Sum_probs=19.6
Q ss_pred HHHHHHHHC-CCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 999999985-99979999994999889999999999980
Q gi|254780694|r 191 VECLTWISE-GKTSDEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 191 ~eVl~lia~-G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
.++..++.. +++-.+||..+|-+-. .|..+.|+|.
T Consensus 66 ~~a~~~L~~~~~si~~IA~~~Gf~~~---s~F~r~Fk~~ 101 (129)
T 1bl0_A 66 TEIAQKLKESNEPILYLAERYGFESQ---QTLTRTFKNY 101 (129)
T ss_dssp HHHHHHHHHCCCCHHHHHHHTTCSCH---HHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCH---HHHHHHHHHH
T ss_conf 99999987679999999999689987---8999999999
No 325
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=49.48 E-value=9.1 Score=15.96 Aligned_cols=20 Identities=20% Similarity=0.421 Sum_probs=16.3
Q ss_pred CHHHHHHHHCCCHHHHHHHH
Q ss_conf 97999999499988999999
Q gi|254780694|r 202 TSDEIAVILGISRNTVNNYI 221 (246)
Q Consensus 202 t~~eIA~~L~iS~~TV~~hl 221 (246)
|-+++|..+++|..||+.=+
T Consensus 37 ser~La~~~~vSr~tvr~Al 56 (102)
T 1v4r_A 37 SVADIRAQFGVAAKTVSRAL 56 (102)
T ss_dssp CHHHHHHHSSSCTTHHHHHT
T ss_pred CHHHHHHHHCCCHHHHHHHH
T ss_conf 79999999798779999999
No 326
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=48.94 E-value=10 Score=15.61 Aligned_cols=39 Identities=18% Similarity=0.184 Sum_probs=26.7
Q ss_pred CCCHHHHHHHH--HHHCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 88977999999--9985999799999949998899999999
Q gi|254780694|r 185 ELTGREVECLT--WISEGKTSDEIAVILGISRNTVNNYIAS 223 (246)
Q Consensus 185 ~LT~RE~eVl~--lia~G~t~~eIA~~L~iS~~TV~~hl~~ 223 (246)
.|-+-|++.+. |-..|---.+.|+.|+||.+|....++.
T Consensus 37 ~L~~~Er~~I~~aL~~~~GN~s~AAr~LGIsR~TLyrklkk 77 (81)
T 1umq_A 37 SADRVRWEHIQRIYEMCDRNVSETARRLNMHRRTLQRILAK 77 (81)
T ss_dssp CHHHHHHHHHHHHHHHTTSCHHHHHHHHTSCHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999999999997277999999979899999999997
No 327
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=48.89 E-value=10 Score=15.60 Aligned_cols=45 Identities=18% Similarity=0.186 Sum_probs=30.1
Q ss_pred CCCHHHHHHHHHHHC------CCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 889779999999985------999799999949998899999999999807
Q gi|254780694|r 185 ELTGREVECLTWISE------GKTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 185 ~LT~RE~eVl~lia~------G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
.+|+-+.++|+-.=+ ...-++||..|++|+++|+.--.|=..|+-
T Consensus 5 ~FT~~Ql~~Le~~F~~n~~Ps~~~~~~LA~~lgls~~~V~~WFqNrR~k~k 55 (60)
T 3a02_A 5 TFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWR 55 (60)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 869999999999998669979999999999919899993582088889899
No 328
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research, nysgxrc; 2.33A {Bacteroides vulgatus atcc 8482}
Probab=48.85 E-value=10 Score=15.60 Aligned_cols=16 Identities=6% Similarity=-0.031 Sum_probs=9.1
Q ss_pred CCCHHHHHHHHHHCCC
Q ss_conf 9988999999997589
Q gi|254780694|r 230 TKTRSGAIAYAVRNNI 245 (246)
Q Consensus 230 v~~R~eav~~A~~~Gl 245 (246)
..+..|...+..+.|+
T Consensus 319 ~~s~~e~~~~l~~aGF 334 (363)
T 3dp7_A 319 MFHSDDLIRCIENAGL 334 (363)
T ss_dssp SCCHHHHHHHHHTTTE
T ss_pred CCCHHHHHHHHHHCCC
T ss_conf 7899999999997799
No 329
>2qco_A CMER; transcriptional regulator protein; 2.25A {Campylobacter jejuni} PDB: 3hgg_A* 3hgy_A*
Probab=48.09 E-value=2.1 Score=20.10 Aligned_cols=11 Identities=18% Similarity=0.205 Sum_probs=5.4
Q ss_pred HHHHHHCCCCH
Q ss_conf 99999859997
Q gi|254780694|r 193 CLTWISEGKTS 203 (246)
Q Consensus 193 Vl~lia~G~t~ 203 (246)
++.++-.|.+.
T Consensus 197 ~v~~~l~Gi~~ 207 (210)
T 2qco_A 197 VVNVFLNGINS 207 (210)
T ss_dssp HHHHHHTCSCC
T ss_pred HHHHHHCCCCC
T ss_conf 99999766486
No 330
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled coil, structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=47.59 E-value=11 Score=15.47 Aligned_cols=37 Identities=19% Similarity=0.165 Sum_probs=31.9
Q ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 9999999859997999999499988999999999998
Q gi|254780694|r 191 VECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 191 ~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
.+||.-+..|.+-..|+...++|.++++.|+..+..+
T Consensus 11 ~dIL~~~~~~~~~T~i~~~~nLs~~~~~~yl~~L~~~ 47 (95)
T 1r7j_A 11 QAILEACKSGSPKTRIMYGANLSYALTGRYIKMLMDL 47 (95)
T ss_dssp HHHHHHHTTCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf 9999997669977599998199999999999999988
No 331
>2iu5_A DHAS, hypothetical protein YCEG; synthase, activator, TETR family, dihydroxyacetone; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=47.56 E-value=4 Score=18.28 Aligned_cols=16 Identities=13% Similarity=0.115 Sum_probs=7.2
Q ss_pred HHHHHCCCCHHHHHHH
Q ss_conf 9999859997999999
Q gi|254780694|r 194 LTWISEGKTSDEIAVI 209 (246)
Q Consensus 194 l~lia~G~t~~eIA~~ 209 (246)
..|+.+|.+..++.+.
T Consensus 158 ~~~l~~~~~~e~~~~~ 173 (195)
T 2iu5_A 158 RESIIRGNSLEKLYSQ 173 (195)
T ss_dssp HHHHHHTCCSGGGHHH
T ss_pred HHHHHCCCCHHHHHHH
T ss_conf 9998839697899999
No 332
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1- carboxylic acid, PHZM; 1.80A {Pseudomonas aeruginosa PAO1}
Probab=47.44 E-value=11 Score=15.46 Aligned_cols=16 Identities=19% Similarity=0.086 Sum_probs=8.3
Q ss_pred CCHHH-HHHHHHHHCCC
Q ss_conf 89779-99999998599
Q gi|254780694|r 186 LTGRE-VECLTWISEGK 201 (246)
Q Consensus 186 LT~RE-~eVl~lia~G~ 201 (246)
+++.+ .++|+-+.+-+
T Consensus 246 ~~d~~~~~iL~~~~~aL 262 (334)
T 2ip2_A 246 LDEAASLRLLGNCREAM 262 (334)
T ss_dssp CCHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHH
T ss_conf 89789999999999860
No 333
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=47.20 E-value=11 Score=15.43 Aligned_cols=13 Identities=0% Similarity=0.123 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999998
Q gi|254780694|r 42 TVSWTMRMYALTE 54 (246)
Q Consensus 42 ~~~~~~~~~~~~~ 54 (246)
...+...+..+.+
T Consensus 44 ~~~v~~~l~~L~~ 56 (219)
T 2z99_A 44 VYRVAAKLQLMAD 56 (219)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 8999999999999
No 334
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=47.07 E-value=11 Score=15.42 Aligned_cols=44 Identities=14% Similarity=0.139 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHHHCC------CCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 8897799999999859------9979999994999889999999999980
Q gi|254780694|r 185 ELTGREVECLTWISEG------KTSDEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 185 ~LT~RE~eVl~lia~G------~t~~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
.+|+.+.++|+-.=+- ..-.+||..|++++.+|+..-.|=..|+
T Consensus 6 ~ft~~Q~~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~~V~~WFqNrR~k~ 55 (58)
T 1ig7_A 6 PFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKA 55 (58)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 89999999999999867997999999999995969888669717468776
No 335
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.96 E-value=11 Score=15.41 Aligned_cols=47 Identities=21% Similarity=0.323 Sum_probs=36.8
Q ss_pred CCCCCCHHHHHHHHH-HHCCCC---------HHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 888889779999999-985999---------79999994999889999999999980
Q gi|254780694|r 182 KDFELTGREVECLTW-ISEGKT---------SDEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 182 ~~~~LT~RE~eVl~l-ia~G~t---------~~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
....+|+.++++|+- ..+.+. -.+||..++++++.|+.--.|-..|+
T Consensus 11 ~Rt~ft~eQ~~~Le~~F~~n~~~~~~P~~e~~~~La~~~gl~~~~v~~WF~NrR~k~ 67 (80)
T 2da4_A 11 DRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKY 67 (80)
T ss_dssp SSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 999899999999999999827788898999999999998969999999999999998
No 336
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=46.13 E-value=11 Score=15.33 Aligned_cols=44 Identities=16% Similarity=0.108 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHHHC------CCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 889779999999985------99979999994999889999999999980
Q gi|254780694|r 185 ELTGREVECLTWISE------GKTSDEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 185 ~LT~RE~eVl~lia~------G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
.+|+.+.++|.-.=+ ...-++||..|++|+.+|+..-.|=..|.
T Consensus 7 ~ft~~Ql~~Le~~F~~~~yP~~~~r~~La~~l~l~~~qV~vWFqNrR~k~ 56 (60)
T 1jgg_A 7 AFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKD 56 (60)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHCCCCCHHHHH
T ss_conf 89999999999999867998989999999990998326110374266787
No 337
>1i3j_A I-TEVI, intron-associated endonuclease 1; protein-DNA complex, extended structure, Zn-finger, minor groove helix, helix-turn-helix; 2.20A {Enterobacteria phage T4} SCOP: d.285.1.1 PDB: 1t2t_A
Probab=44.75 E-value=12 Score=15.20 Aligned_cols=24 Identities=21% Similarity=0.104 Sum_probs=21.3
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 999799999949998899999999
Q gi|254780694|r 200 GKTSDEIAVILGISRNTVNNYIAS 223 (246)
Q Consensus 200 G~t~~eIA~~L~iS~~TV~~hl~~ 223 (246)
=-|..|.|+.|+++..|+...+++
T Consensus 83 Y~S~~EAAr~Lgis~~TI~~RiKs 106 (116)
T 1i3j_A 83 FDCAADAARHFKISSGLVTYRVKS 106 (116)
T ss_dssp ESSHHHHHHHHTCCHHHHHHHHHC
T ss_pred ECCHHHHHHHHCCCHHHHHHHHHC
T ss_conf 628999999968983778998708
No 338
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.83A {Rhodopseudomonas palustris CGA009} SCOP: a.35.1.13
Probab=44.26 E-value=12 Score=15.15 Aligned_cols=45 Identities=13% Similarity=0.035 Sum_probs=34.8
Q ss_pred HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
Q ss_conf 859997999999499988999999999998079988999999997589
Q gi|254780694|r 198 SEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 (246)
Q Consensus 198 a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~Gl 245 (246)
..|+|-+|.|..|+||..+|..-.+. |+.--+-..++.++...|.
T Consensus 51 ~~glTQ~eaA~~lGisq~~iS~l~~G---k~~~~Sld~L~~~~~~LG~ 95 (120)
T 2o38_A 51 RARLSQAAAAARLGINQPKVSALRNY---KLEGFSVERLMTLLNALDQ 95 (120)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTT---CCTTCCHHHHHHHHHHTTE
T ss_pred HCCCCHHHHHHHHCCCHHHHHHHHCC---CCCCCCHHHHHHHHHHCCC
T ss_conf 86996755655508888998999758---8678889999999998599
No 339
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=43.95 E-value=12 Score=15.12 Aligned_cols=27 Identities=19% Similarity=0.134 Sum_probs=13.7
Q ss_pred HCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 859997999999499988999999999998
Q gi|254780694|r 198 SEGKTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 198 a~G~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
-.+++-.+||..+|-+- ..|..+.|+|
T Consensus 68 ~~~~~i~~IA~~~Gf~~---~s~F~~~Fk~ 94 (108)
T 3oou_A 68 QTKDNLTIIAGKSGYTD---MAYFYRQFKK 94 (108)
T ss_dssp HCCCCHHHHHHHTTCCC---HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCC---HHHHHHHHHH
T ss_conf 45545999999929998---8999999999
No 340
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=43.50 E-value=13 Score=15.07 Aligned_cols=43 Identities=9% Similarity=0.144 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHC------CCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 89779999999985------99979999994999889999999999980
Q gi|254780694|r 186 LTGREVECLTWISE------GKTSDEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 186 LT~RE~eVl~lia~------G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
+|+-+.++|+-.=. ...-.+||..|++|+..|+.--.|-..|+
T Consensus 11 ~T~eQl~~Le~~F~~~~yP~~~~~~~LA~~lgls~~qV~~WFqNrR~r~ 59 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRC 59 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 9999999999999982899899999999998899999899899999986
No 341
>1kyz_A COMT, caffeic acid 3-O-methyltransferase; lignin, ferulic acid, methylation; HET: SAH FER; 2.20A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1kyw_A*
Probab=43.30 E-value=13 Score=15.05 Aligned_cols=17 Identities=18% Similarity=-0.062 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHCC
Q ss_conf 99999999999987193
Q gi|254780694|r 42 TVSWTMRMYALTEYVGA 58 (246)
Q Consensus 42 ~~~~~~~~~~~~~~~g~ 58 (246)
...+..++.+.....|+
T Consensus 73 ~~~lL~rlLr~L~~~gl 89 (365)
T 1kyz_A 73 APVMLDRMLRLLACYII 89 (365)
T ss_dssp HHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHCCC
T ss_conf 58999999999996583
No 342
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.14 E-value=13 Score=15.04 Aligned_cols=45 Identities=9% Similarity=0.164 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHH-HCC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 88897799999999-859-----9979999994999889999999999980
Q gi|254780694|r 184 FELTGREVECLTWI-SEG-----KTSDEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 184 ~~LT~RE~eVl~li-a~G-----~t~~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
..+|+-+.++|+-. ... ..-.+||..|++++++|+..-.|-..|.
T Consensus 12 t~~t~~Q~~~Le~~F~~~~~P~~~~~~~La~~l~l~~~qV~~WFqNrR~k~ 62 (80)
T 2dmq_A 12 TSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKF 62 (80)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 999999999999999876997999999999996959999689769889999
No 343
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural genomics, midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=43.01 E-value=3.6 Score=18.55 Aligned_cols=15 Identities=20% Similarity=0.417 Sum_probs=6.5
Q ss_pred HHHHHHHHHHCCCCH
Q ss_conf 999999998079988
Q gi|254780694|r 219 NYIASIMRKTATKTR 233 (246)
Q Consensus 219 ~hl~~i~~KLgv~~R 233 (246)
.+..-+++=+|...+
T Consensus 190 ~~~~~~l~~l~~~~~ 204 (211)
T 3him_A 190 RYVELALRMVGCADR 204 (211)
T ss_dssp HHHHHHHHHTTCCC-
T ss_pred HHHHHHHHHHCCCCC
T ss_conf 999999987088889
No 344
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PSI, protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=42.44 E-value=13 Score=14.97 Aligned_cols=57 Identities=25% Similarity=0.146 Sum_probs=36.9
Q ss_pred CCHHHHH-------HHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
Q ss_conf 8977999-------99999859997999999499988999999999998079988999999997589
Q gi|254780694|r 186 LTGREVE-------CLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 (246)
Q Consensus 186 LT~RE~e-------Vl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~Gl 245 (246)
+|+-|.+ .++-+.+|+|-.|.|..++||..|+..+-+. |....+-..+...|...|+
T Consensus 6 ~t~~~~~~~~~lG~~lr~~R~~~s~~elA~~~gis~~~is~iE~G---~~~~~s~~~l~~ia~~L~v 69 (86)
T 2ofy_A 6 LTAEELERGQRLGELLRSARGDMSMVTVAFDAGISVETLRKIETG---RIATPAFFTIAAVARVLDL 69 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHTCCHHHHHHHHTT---CCSSCBHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHCC---CCCCCHHHHHHHHHHHHCC
T ss_conf 888999999999999999998789999999979799999999869---9788759999999999897
No 345
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural genomics, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=42.24 E-value=4.3 Score=18.06 Aligned_cols=27 Identities=19% Similarity=0.366 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999799999949998899999999999
Q gi|254780694|r 200 GKTSDEIAVILGISRNTVNNYIASIMR 226 (246)
Q Consensus 200 G~t~~eIA~~L~iS~~TV~~hl~~i~~ 226 (246)
-.|..+||..+++|+.||..-++..-+
T Consensus 164 ~~t~~~iA~~lg~sr~tvsr~l~~L~~ 190 (213)
T 1o5l_A 164 PVTLEELSRLFGCARPALSRVFQELER 190 (213)
T ss_dssp ---------------------------
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 568999999979899999999999997
No 346
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=42.03 E-value=13 Score=14.93 Aligned_cols=46 Identities=13% Similarity=0.026 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHHHHHCC------CCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 88897799999999859------99799999949998899999999999807
Q gi|254780694|r 184 FELTGREVECLTWISEG------KTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 184 ~~LT~RE~eVl~lia~G------~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
..+|+-+.++|+-.=+- ..-++||..|+++++.|+.--.|=..|+-
T Consensus 25 t~ft~~Q~~~Le~~F~~~~yP~~~~r~~LA~~lgl~~~~V~vWFQNrR~k~k 76 (81)
T 1b8i_A 25 QTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLK 76 (81)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHCHHHHHHHH
T ss_conf 6689999999999998779989999999999959898881242342367788
No 347
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription/DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=41.53 E-value=13 Score=14.88 Aligned_cols=49 Identities=22% Similarity=0.268 Sum_probs=34.3
Q ss_pred CCCCCHHHHHHHHHHHCC------CCHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 888897799999999859------9979999994999889999999999980799
Q gi|254780694|r 183 DFELTGREVECLTWISEG------KTSDEIAVILGISRNTVNNYIASIMRKTATK 231 (246)
Q Consensus 183 ~~~LT~RE~eVl~lia~G------~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~ 231 (246)
...+|+-+.++|.-.=+- ..-.+||..|++++++|++.-.|-.++..-.
T Consensus 101 R~~~t~~q~~~L~~~f~~~~~P~~~~~~~la~~l~l~~~~V~~WF~N~R~r~~~~ 155 (164)
T 2d5v_A 101 RLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDK 155 (164)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC
T ss_pred CEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHH
T ss_conf 1127899999999998727998999999999996929899999899751661456
No 348
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=41.49 E-value=13 Score=14.88 Aligned_cols=10 Identities=10% Similarity=0.318 Sum_probs=4.1
Q ss_pred HHHHHHHHCC
Q ss_conf 9999987193
Q gi|254780694|r 49 MYALTEYVGA 58 (246)
Q Consensus 49 ~~~~~~~~g~ 58 (246)
+..+++.+|.
T Consensus 56 l~~ia~~l~v 65 (192)
T 1y9q_A 56 LWKIASGLEA 65 (192)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHCC
T ss_conf 9999988556
No 349
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative; 2.04A {Staphylococcus aureus}
Probab=41.10 E-value=13 Score=14.97 Aligned_cols=123 Identities=6% Similarity=-0.051 Sum_probs=64.0
Q ss_pred HHEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEECCCCCHH
Q ss_conf 11000221445888876553023213799997327999999999999987193023000266631112321000689589
Q gi|254780694|r 6 QQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFD 85 (246)
Q Consensus 6 ~~~~~~l~r~d~~r~~~v~~l~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 85 (246)
...+|++-.+++.-...+..+......+.-+..+.+..+....+.. . .|.....+..+.+..+.+
T Consensus 2 ~m~~ILIvDD~~~~r~~l~~~L~~~~~~~vv~~a~~g~eal~~~~~----~-----------~pDlvllDi~mP~~~G~e 66 (133)
T 3b2n_A 2 SLTSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEE----Y-----------NPNVVILDIEMPGMTGLE 66 (133)
T ss_dssp -CEEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHH----H-----------CCSEEEECSSCSSSCHHH
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHH----C-----------CCCEEEEECCCCCCCHHH
T ss_conf 9999999929999999999999868996999998999999999985----6-----------999999957789998899
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCC
Q ss_conf 999999669845173899998523244303254333321445714750337368999999971787
Q gi|254780694|r 86 LVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKG 151 (246)
Q Consensus 86 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (246)
+.+....... .-|+ ..................++.+|+.++.+......++..+..+.
T Consensus 67 ~~~~ir~~~~--~~~v------I~lT~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~I~~v~~g~ 124 (133)
T 3b2n_A 67 VLAEIRKKHL--NIKV------IIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGE 124 (133)
T ss_dssp HHHHHHHTTC--SCEE------EEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC--
T ss_pred HHHHHHHHCC--CCCE------EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
T ss_conf 9999998689--9968------99967899999999998799789979999999999999999718
No 350
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.07 E-value=14 Score=14.84 Aligned_cols=46 Identities=15% Similarity=0.180 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHHHCCC------CHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 888977999999998599------9799999949998899999999999807
Q gi|254780694|r 184 FELTGREVECLTWISEGK------TSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 184 ~~LT~RE~eVl~lia~G~------t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
..+|+.+.++|+-.=+=. .-.+||..|+++++.|+.--.|=..|.-
T Consensus 12 t~ft~~Ql~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 63 (70)
T 2djn_A 12 TIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIK 63 (70)
T ss_dssp CSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCS
T ss_pred CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 9899999999999999869989999999999978786674674340265761
No 351
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription factor, alternative splicing, developmental protein; 2.6A {Mus musculus}
Probab=40.93 E-value=14 Score=14.82 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=21.1
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 79999994999889999999999980
Q gi|254780694|r 203 SDEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 203 ~~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
-.+||..|++|+..|+..-.|=..|.
T Consensus 33 r~~LA~~lgl~~~qV~~WFqNrR~k~ 58 (62)
T 2vi6_A 33 MQELSSILNLSYKQVKTWFQNQRMKC 58 (62)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCCHHHHHHCCHHHHHHH
T ss_conf 99999991988778232255577778
No 352
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=40.85 E-value=14 Score=14.81 Aligned_cols=47 Identities=11% Similarity=0.202 Sum_probs=36.9
Q ss_pred CCCCCHHHHHHHHH-HHC-CC-----CHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 88889779999999-985-99-----9799999949998899999999999807
Q gi|254780694|r 183 DFELTGREVECLTW-ISE-GK-----TSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 183 ~~~LT~RE~eVl~l-ia~-G~-----t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
...+|+-+.++|+- ..+ .. .-.+||..|+++++.|+.--.|-..|.-
T Consensus 11 R~~~t~~q~~~Le~~F~~~n~~P~~~~~~~LA~~lgl~~~qV~~WF~NrR~k~k 64 (71)
T 1wi3_A 11 RTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
T ss_conf 986999999999999998479959999999999959998996784087676541
No 353
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=40.85 E-value=14 Score=14.81 Aligned_cols=37 Identities=30% Similarity=0.313 Sum_probs=26.8
Q ss_pred CCHHHHHHHHH--HHCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 89779999999--98599979999994999889999999
Q gi|254780694|r 186 LTGREVECLTW--ISEGKTSDEIAVILGISRNTVNNYIA 222 (246)
Q Consensus 186 LT~RE~eVl~l--ia~G~t~~eIA~~L~iS~~TV~~hl~ 222 (246)
|.+-|++++.. -..|..-...|+.||||..|...+++
T Consensus 265 L~~~E~~~I~~aL~~~~gn~~~aA~~LGisR~tLyrklk 303 (304)
T 1ojl_A 265 LVDVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 303 (304)
T ss_dssp HHHHHHHHHHHHHHTTTTCHHHHHHHHTSCHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf 999999999999999299899999998889999999867
No 354
>3bwg_A Uncharacterized HTH-type transcriptional regulator YYDK; APC85486, structural genomics, PSI-2, protein structure initiative; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=40.58 E-value=14 Score=14.79 Aligned_cols=12 Identities=33% Similarity=0.481 Sum_probs=4.9
Q ss_pred HHHHHHHHCCCH
Q ss_conf 799999949998
Q gi|254780694|r 203 SDEIAVILGISR 214 (246)
Q Consensus 203 ~~eIA~~L~iS~ 214 (246)
+.++|+.|++++
T Consensus 186 ~~~~a~~L~i~~ 197 (239)
T 3bwg_A 186 NEEEAEYLGLEA 197 (239)
T ss_dssp CHHHHHHHTSCT
T ss_pred CHHHHHHCCCCC
T ss_conf 999998619599
No 355
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=40.34 E-value=14 Score=14.76 Aligned_cols=38 Identities=16% Similarity=0.063 Sum_probs=29.7
Q ss_pred HHHHHHHHHHCC--CCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 799999999859--99799999949998899999999999
Q gi|254780694|r 189 REVECLTWISEG--KTSDEIAVILGISRNTVNNYIASIMR 226 (246)
Q Consensus 189 RE~eVl~lia~G--~t~~eIA~~L~iS~~TV~~hl~~i~~ 226 (246)
...+++.++-+. .|.++++..+++|..|++..++....
T Consensus 298 ~~~~ll~~l~~~p~~t~~~~~~~~~vs~~Ta~~~l~~L~~ 337 (373)
T 2qc0_A 298 YSHELVQVIFEQPYCRIQNLVESGLAKRQTASVYLKQLCD 337 (373)
T ss_dssp CCHHHHHHHHHCSEEEHHHHHHTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 8999999999789843999999869899999999999997
No 356
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=39.95 E-value=14 Score=14.72 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=12.6
Q ss_pred HHHHHHHC-CCCHHHHHHHHCCCHH
Q ss_conf 99999985-9997999999499988
Q gi|254780694|r 192 ECLTWISE-GKTSDEIAVILGISRN 215 (246)
Q Consensus 192 eVl~lia~-G~t~~eIA~~L~iS~~ 215 (246)
.+..++.. +++..+||..+|-+-.
T Consensus 62 ~A~~lL~~~~~~i~~IA~~~Gf~~~ 86 (120)
T 3mkl_A 62 RALQLIVIHGFSIKRVAVSCGYHSV 86 (120)
T ss_dssp HHHHHHTSTTCCHHHHHHHTTCSCH
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCCH
T ss_conf 9999860565839999999789988
No 357
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=39.86 E-value=14 Score=14.72 Aligned_cols=46 Identities=9% Similarity=0.190 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHHHHHC-C-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 8889779999999985-9-----99799999949998899999999999807
Q gi|254780694|r 184 FELTGREVECLTWISE-G-----KTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 184 ~~LT~RE~eVl~lia~-G-----~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
..+|+.+.++|+-.=+ . ..-.+||..|++++++|+.--.|-..|+-
T Consensus 12 ~~ft~~q~~~Le~~F~~~~~P~~~~~~~La~~~~l~~~qV~~WF~N~R~r~k 63 (70)
T 2da2_A 12 TRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKAR 63 (70)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 9899999999999999869989999999999949598893783297788874
No 358
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=39.67 E-value=14 Score=14.70 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHHHHHCC------CCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 88897799999999859------99799999949998899999999999807
Q gi|254780694|r 184 FELTGREVECLTWISEG------KTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 184 ~~LT~RE~eVl~lia~G------~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
..+|+.+.++|+-.=+- ..-.+||..|+++++.|+..-.|=..|+-
T Consensus 27 t~ft~~Q~~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~~V~~WFqNrR~k~k 78 (84)
T 2kt0_A 27 TVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSK 78 (84)
T ss_dssp SCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 8889999999999999879999899999999847987574686288888888
No 359
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, protein structure initiative; 2.40A {Rhodospirillum rubrum atcc 11170}
Probab=39.58 E-value=14 Score=14.69 Aligned_cols=126 Identities=13% Similarity=0.024 Sum_probs=64.8
Q ss_pred EEEEECCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEECCCCCHHHH
Q ss_conf 00022144588887655302321379999732799999999999998719302300026663111232100068958999
Q gi|254780694|r 8 VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSSDWPFDLV 87 (246)
Q Consensus 8 ~~~~l~r~d~~r~~~v~~l~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 87 (246)
++|++-.+|+.-...+.......+.-..+..+.+..+....+.. ..........++.....+..+....+.+..
T Consensus 5 ~~ILiVDDd~~~~~~l~~~L~~~g~~~~v~~a~~g~eAl~~l~~------~~~~~~~~~~~~dlIilD~~mP~~dG~el~ 78 (152)
T 3heb_A 5 VTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFG------DDKSGRVSAGRAQLVLLDLNLPDMTGIDIL 78 (152)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHC------TTSSSGGGTTCBEEEEECSBCSSSBHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC------CHHHHHHHCCCCCEEEEECCCCCCCHHHHH
T ss_conf 65999979999999999999977996389997888999999843------204556650699989986899999889999
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHH
Q ss_conf 9999669845173899998523244303254333321445714750337368999999
Q gi|254780694|r 88 RCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLM 145 (246)
Q Consensus 88 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (246)
+.+........-|++- ................++.+|+.++++.......+.
T Consensus 79 ~~ir~~~~~~~iPvI~------lTa~~~~~~~~~a~~~G~~~yl~KP~~~~~L~~~i~ 130 (152)
T 3heb_A 79 KLVKENPHTRRSPVVI------LTTTDDQREIQRCYDLGANVYITKPVNYENFANAIR 130 (152)
T ss_dssp HHHHHSTTTTTSCEEE------EESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHH
T ss_pred HHHHHCCCCCCCCEEE------EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
T ss_conf 9998487779995899------977699999999998699899979899999999999
No 360
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, PSI-2, protein structure initiative; 1.80A {Cytophaga hutchinsonii atcc 33406}
Probab=39.32 E-value=5.1 Score=17.59 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=20.2
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 599979999994999889999999999980
Q gi|254780694|r 199 EGKTSDEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 199 ~G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
.-.|.++||..||+|+.|+.. |++||
T Consensus 167 ~~~t~~~iA~~lG~sr~tlSR----i~k~l 192 (194)
T 3dn7_A 167 QRVPQYLLASYLGFTPEYLSE----IRKKY 192 (194)
T ss_dssp ------------------------------
T ss_pred CCCCHHHHHHHHCCCHHHHHH----HHHHH
T ss_conf 697999999997998999999----99986
No 361
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.16 E-value=15 Score=14.65 Aligned_cols=45 Identities=16% Similarity=0.152 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHHHC------CCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 8889779999999985------99979999994999889999999999980
Q gi|254780694|r 184 FELTGREVECLTWISE------GKTSDEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 184 ~~LT~RE~eVl~lia~------G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
..+|+.+.++|+-.=+ ...-.+||..|++++..|+.--.|=..|.
T Consensus 12 t~ft~~Ql~~Le~~F~~~~yP~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~ 62 (70)
T 2dmu_A 12 TIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKW 62 (70)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 999999999999999987999989999999995989899478427626766
No 362
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=39.07 E-value=15 Score=14.64 Aligned_cols=44 Identities=18% Similarity=0.290 Sum_probs=33.5
Q ss_pred CCCHHHHHHHH-HHHCCC--------CHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 88977999999-998599--------979999994999889999999999980
Q gi|254780694|r 185 ELTGREVECLT-WISEGK--------TSDEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 185 ~LT~RE~eVl~-lia~G~--------t~~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
.+|+...+||+ |+.+-. .-.+||..+++|+..|+.-..|-..|.
T Consensus 9 ~f~~~~~~iL~~wf~~~~~nPyP~~~~k~~La~~~~l~~~qV~~WF~N~R~r~ 61 (64)
T 1du6_A 9 HMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRY 61 (64)
T ss_dssp SSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTS
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999999981679996999999999998919999799899988766
No 363
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens}
Probab=38.90 E-value=15 Score=14.62 Aligned_cols=44 Identities=16% Similarity=0.296 Sum_probs=31.4
Q ss_pred CCCHHHHHHH-HHHHCCC--------CHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 8897799999-9998599--------979999994999889999999999980
Q gi|254780694|r 185 ELTGREVECL-TWISEGK--------TSDEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 185 ~LT~RE~eVl-~lia~G~--------t~~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
.|++...+|| .|+.+=. .-.++|..+++|+.-|++-..|...|.
T Consensus 4 ~fp~e~~~iL~~wf~~h~~~PYPs~~ek~~La~~~~ls~~qV~~WF~N~R~R~ 56 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRI 56 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 29899999999999986638998999999999998909999989999989761
No 364
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=38.47 E-value=15 Score=14.58 Aligned_cols=45 Identities=16% Similarity=0.161 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHHHHCC------CCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 88897799999999859------9979999994999889999999999980
Q gi|254780694|r 184 FELTGREVECLTWISEG------KTSDEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 184 ~~LT~RE~eVl~lia~G------~t~~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
..+|+.+.++|.-.=.= ..-.+||..||+|+..|+.--.|=..|.
T Consensus 10 t~~s~~q~~~Le~~F~~~~yP~~~~~~~LA~~~gl~~~qV~~WF~NrR~r~ 60 (61)
T 1akh_A 10 SSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRS 60 (61)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCC
T ss_conf 889999999999999886999999999999997869888248304004256
No 365
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.31 E-value=15 Score=14.56 Aligned_cols=46 Identities=20% Similarity=0.094 Sum_probs=34.3
Q ss_pred CCCCHHHHHHHHHHHCCC------CHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 888977999999998599------9799999949998899999999999807
Q gi|254780694|r 184 FELTGREVECLTWISEGK------TSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 184 ~~LT~RE~eVl~lia~G~------t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
..+|+-+.++|+-.=+-- .-.+||..|++++..|+.--.|=..|+-
T Consensus 22 t~ft~~Q~~~Le~~F~~~~yP~~~~r~~LA~~lgl~~~qV~vWFqNrR~k~k 73 (80)
T 2dmt_A 22 TVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWK 73 (80)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 9989999999999998769999999999999978498884798398899998
No 366
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=37.93 E-value=15 Score=14.52 Aligned_cols=46 Identities=15% Similarity=0.283 Sum_probs=36.8
Q ss_pred CCCCCHHHHHHHH-HHHCCCC--------HHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 8888977999999-9985999--------79999994999889999999999980
Q gi|254780694|r 183 DFELTGREVECLT-WISEGKT--------SDEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 183 ~~~LT~RE~eVl~-lia~G~t--------~~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
...||+-..++|. |+.+-.. -.+||..+++|+.-|+.-..|...|+
T Consensus 11 r~~~~~~~~~~L~~wf~~~~~nPyPs~~~~~~La~~~~l~~~qv~~WF~N~R~r~ 65 (83)
T 2dmn_A 11 KGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRI 65 (83)
T ss_dssp CSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 9999999999999999983648997999999999998819999789789999986
No 367
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=37.88 E-value=15 Score=14.52 Aligned_cols=17 Identities=24% Similarity=0.163 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHCCCCHH
Q ss_conf 77999999998599979
Q gi|254780694|r 188 GREVECLTWISEGKTSD 204 (246)
Q Consensus 188 ~RE~eVl~lia~G~t~~ 204 (246)
....+++..+..|....
T Consensus 191 ~~h~~i~~ai~~~d~~~ 207 (239)
T 1hw1_A 191 GFYHKLSALCSEGAHDQ 207 (239)
T ss_dssp HHHHHHHHHHHHTCSHH
T ss_pred HHHHHHHHHHHCCCHHH
T ss_conf 99999999998699999
No 368
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=37.85 E-value=15 Score=14.52 Aligned_cols=46 Identities=17% Similarity=0.173 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHHHHC-C--------CCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 8889779999999985-9--------99799999949998899999999999807
Q gi|254780694|r 184 FELTGREVECLTWISE-G--------KTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 184 ~~LT~RE~eVl~lia~-G--------~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
..+|+-..++|+-.-. - ..-.+||..+++|+..|+.--.|...|+-
T Consensus 6 ~~~t~~q~~~L~~~f~~~~~~pYPs~~~~~~La~~~~ls~~qV~~WF~N~R~r~k 60 (73)
T 1puf_B 6 RNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 60 (73)
T ss_dssp CCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
T ss_conf 9999999999999999737789989999999999988299998899999998742
No 369
>2fna_A Conserved hypothetical protein; 13814777, structural genomics, joint center for structural genomics, JCSG; HET: MSE ADP; 2.00A {Sulfolobus solfataricus P2} SCOP: a.4.5.11 c.37.1.20
Probab=37.55 E-value=16 Score=14.49 Aligned_cols=45 Identities=16% Similarity=0.173 Sum_probs=35.2
Q ss_pred CCCCCCHHHHHHHHHHHCCCCHH------HHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 88888977999999998599979------9999949998899999999999
Q gi|254780694|r 182 KDFELTGREVECLTWISEGKTSD------EIAVILGISRNTVNNYIASIMR 226 (246)
Q Consensus 182 ~~~~LT~RE~eVl~lia~G~t~~------eIA~~L~iS~~TV~~hl~~i~~ 226 (246)
....+++.+.+||..++.+.+.. +++...+++..+|..+++++..
T Consensus 284 ~~~~~~~~~~~iL~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~ 334 (357)
T 2fna_A 284 GREIARKRYLNIMRTLSKCGKWSDVKRALELEEGIEISDSEIYNYLTQLTK 334 (357)
T ss_dssp TCGGGHHHHHHHHHHHTTCBCHHHHHHHHHHHHCSCCCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 863188999999999866798323989999974279999999999999997
No 370
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=37.49 E-value=16 Score=14.48 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=17.8
Q ss_pred HHHHHHHCC-CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 999999859-997999999499988999999999998
Q gi|254780694|r 192 ECLTWISEG-KTSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 192 eVl~lia~G-~t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
.+..++..+ ++..|||..+|.+-. .|..+.|+|
T Consensus 59 ~a~~lL~~~~~si~~IA~~~Gf~~~---~~f~r~Fk~ 92 (103)
T 3lsg_A 59 KAKLLLLTTELKNYEIAEQVGFEDV---NYFITKFKK 92 (103)
T ss_dssp HHHHHHHHCCCCHHHHHHHTTCSCH---HHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHCCCH---HHHHHHHHH
T ss_conf 9988987789639999999857998---999999999
No 371
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=36.54 E-value=16 Score=14.39 Aligned_cols=45 Identities=16% Similarity=0.134 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHHHC------CCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 8889779999999985------99979999994999889999999999980
Q gi|254780694|r 184 FELTGREVECLTWISE------GKTSDEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 184 ~~LT~RE~eVl~lia~------G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
..+|+.+.++|+-.=+ ...-.+||..|++++++|+.--.|=..|.
T Consensus 12 ~~ft~~Q~~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 62 (70)
T 2e1o_A 12 VRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKW 62 (70)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 768999999999999985999999999999995989889568507666898
No 372
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, cytoplasm, binding, transcription; HET: PAM; 1.90A {Vibrio cholerae O395}
Probab=36.48 E-value=16 Score=14.38 Aligned_cols=46 Identities=9% Similarity=-0.025 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHH----CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 977999999998----599979999994999889999999999980799889999
Q gi|254780694|r 187 TGREVECLTWIS----EGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAI 237 (246)
Q Consensus 187 T~RE~eVl~lia----~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav 237 (246)
.+.-.+|..++- +-.|-+++|+.+++|++ |+.+++++.|. +=.|-+
T Consensus 168 ~~~~~~v~~~I~~~~~~~~~l~~lA~~~~~S~~----~l~r~fK~~g~-s~~~yi 217 (276)
T 3gbg_A 168 LDAMEKISCLVKSDITRNWRWADICGELRTNRM----ILKKELESRGV-KFRELI 217 (276)
T ss_dssp TCHHHHHHHHHHHTTTSCCCHHHHHHHHTCCHH----HHHHHHHTTTC-CHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHH----HHHHHHHHHCC-CHHHHH
T ss_conf 899999999998473799999999999798999----99999999698-899999
No 373
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=36.42 E-value=16 Score=14.37 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=20.8
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 9999994999889999999999980
Q gi|254780694|r 204 DEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 204 ~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
++||..|++|++.|+.--.|=..|.
T Consensus 28 ~~LA~~l~l~~~qV~vWFqNrRak~ 52 (56)
T 3a03_A 28 AALAKALRMTDAQVKTWFQNRRTKW 52 (56)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 9999986698678679647778667
No 374
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=36.15 E-value=16 Score=14.35 Aligned_cols=45 Identities=11% Similarity=0.118 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHHHHHC------CCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 8889779999999985------99979999994999889999999999980
Q gi|254780694|r 184 FELTGREVECLTWISE------GKTSDEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 184 ~~LT~RE~eVl~lia~------G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
..+|+.+.++|.-+=+ ...-.+||..||++++.|+.--.|=..|.
T Consensus 7 t~ft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgl~~~qV~~WFqNrR~k~ 57 (68)
T 1ftt_A 7 VLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKM 57 (68)
T ss_dssp SSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHEECCCHHHHHHH
T ss_conf 989999999999999867997999999999981988788000256588898
No 375
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=36.12 E-value=16 Score=14.34 Aligned_cols=22 Identities=5% Similarity=-0.168 Sum_probs=7.9
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 213799997327999999999999
Q gi|254780694|r 29 RSDLLARMIPLDCTVSWTMRMYAL 52 (246)
Q Consensus 29 ~~d~~~~l~~~~~~~~~~~~~~~~ 52 (246)
-.++..++.. +..-+.+++..+
T Consensus 56 ereLA~~~gV--SR~TVR~Al~~L 77 (272)
T 3eet_A 56 QARIREEYGV--SDTVALEARKVL 77 (272)
T ss_dssp HHHHHHHHTC--CHHHHHHHHHHH
T ss_pred HHHHHHHHCC--CHHHHHHHHHHH
T ss_conf 9999999894--999999999999
No 376
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=35.51 E-value=17 Score=14.28 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHH-HHCCCC--------HHHHHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf 889779999999-985999--------7999999499988999999999998079
Q gi|254780694|r 185 ELTGREVECLTW-ISEGKT--------SDEIAVILGISRNTVNNYIASIMRKTAT 230 (246)
Q Consensus 185 ~LT~RE~eVl~l-ia~G~t--------~~eIA~~L~iS~~TV~~hl~~i~~KLgv 230 (246)
.+|+-..+||+- ..+... -.+||..+++|+..|+.-..|-.+|.--
T Consensus 8 rft~~q~~~Le~~f~~~~~~PYPs~~~~~~La~~~gL~~~qV~~WF~N~R~r~k~ 62 (83)
T 1le8_B 8 RFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKT 62 (83)
T ss_dssp CCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
T ss_conf 7999999999999997489899699999999999788999988979998640054
No 377
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=35.14 E-value=17 Score=14.24 Aligned_cols=44 Identities=11% Similarity=0.177 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHH-HHC-----CCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 889779999999-985-----99979999994999889999999999980
Q gi|254780694|r 185 ELTGREVECLTW-ISE-----GKTSDEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 185 ~LT~RE~eVl~l-ia~-----G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
.+|+-+.++|+- ... ...-.+||..|++++..|+.--.|-..|+
T Consensus 9 r~T~~Q~~~Le~~F~~~~~P~~~~~~~La~~~gl~~~qV~~WF~NrR~k~ 58 (76)
T 2ecc_A 9 RKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYAL 58 (76)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 89999999999999986999899999999998859999999999999999
No 378
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural genomics, PSI-2, protein structure initiative; 2.09A {Listeria innocua}
Probab=35.09 E-value=17 Score=14.24 Aligned_cols=16 Identities=13% Similarity=0.144 Sum_probs=9.8
Q ss_pred CCHHHHHHHHCCCHHH
Q ss_conf 9979999994999889
Q gi|254780694|r 201 KTSDEIAVILGISRNT 216 (246)
Q Consensus 201 ~t~~eIA~~L~iS~~T 216 (246)
..+.++|..|+++.+|
T Consensus 185 ~~~~~~a~~L~i~~~~ 200 (236)
T 3edp_A 185 LAGNEQIKNMHLNEND 200 (236)
T ss_dssp ECCHHHHHHHTCCTTC
T ss_pred ECCHHHHHHCCCCCCC
T ss_conf 4999999861939998
No 379
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=34.53 E-value=17 Score=14.18 Aligned_cols=44 Identities=16% Similarity=0.081 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHHHC------CCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 889779999999985------99979999994999889999999999980
Q gi|254780694|r 185 ELTGREVECLTWISE------GKTSDEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 185 ~LT~RE~eVl~lia~------G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
.+|+-+.++|.-.=+ ...-.+||..|++|+.+|+.--.|=..|.
T Consensus 9 ~ft~~Ql~~Le~~F~~~~yP~~~~r~~La~~l~l~~~~V~vWFqNrR~k~ 58 (63)
T 2h1k_A 9 AYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKW 58 (63)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999999877998999999999993979789467308776688
No 380
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=34.40 E-value=17 Score=14.17 Aligned_cols=45 Identities=13% Similarity=0.220 Sum_probs=35.2
Q ss_pred CCCCCCHHHHHHHHHHHC--CC--------CHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 888889779999999985--99--------9799999949998899999999999
Q gi|254780694|r 182 KDFELTGREVECLTWISE--GK--------TSDEIAVILGISRNTVNNYIASIMR 226 (246)
Q Consensus 182 ~~~~LT~RE~eVl~lia~--G~--------t~~eIA~~L~iS~~TV~~hl~~i~~ 226 (246)
....+|+-+.+.|+-..+ +. .-.+||..|+|++++|+.-..|-..
T Consensus 20 ~Rt~~t~~Q~~~L~~~fe~~~~~~~~p~~~~~~~la~~~gl~~~~v~vWF~N~R~ 74 (80)
T 1wh5_A 20 HRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKH 74 (80)
T ss_dssp CSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSS
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHEEEECCCCCC
T ss_conf 7621799999999999998424456989999999999978988894344644776
No 381
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=34.27 E-value=17 Score=14.16 Aligned_cols=44 Identities=14% Similarity=0.193 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHHC------CCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 889779999999985------99979999994999889999999999980
Q gi|254780694|r 185 ELTGREVECLTWISE------GKTSDEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 185 ~LT~RE~eVl~lia~------G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
.+|+-+.++|+-.=+ ...-.+||..|++++..|+.--.|=..|.
T Consensus 13 ~ft~~Q~~~Le~~F~~n~~P~~~~r~~LA~~lgl~~~qV~~WFqNrR~k~ 62 (80)
T 2dms_A 13 TFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKC 62 (80)
T ss_dssp SCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 89999999999999986999889999999990998888779755427874
No 382
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=33.73 E-value=18 Score=14.10 Aligned_cols=45 Identities=9% Similarity=0.087 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHHHHC------CCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 8889779999999985------99979999994999889999999999980
Q gi|254780694|r 184 FELTGREVECLTWISE------GKTSDEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 184 ~~LT~RE~eVl~lia~------G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
..+|+.+.++|+-.=+ ...-.+||..|+++++.|+.--.|=..|.
T Consensus 12 t~ft~~Q~~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 62 (70)
T 2cra_A 12 IPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKE 62 (70)
T ss_dssp CCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 989999999999999986999999999999990999888258648777888
No 383
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=33.65 E-value=18 Score=14.09 Aligned_cols=44 Identities=9% Similarity=0.207 Sum_probs=29.9
Q ss_pred CCCHHHHHHHHHHHC------CCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 889779999999985------99979999994999889999999999980
Q gi|254780694|r 185 ELTGREVECLTWISE------GKTSDEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 185 ~LT~RE~eVl~lia~------G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
.+|+.+.++|+-.=+ ...-.+||..||+|++.|+.--.|=..|.
T Consensus 9 ~ft~~Ql~~Le~~F~~n~~Ps~~~r~~LA~~lgl~~~~V~~WFqNrR~k~ 58 (61)
T 2hdd_A 9 AFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKI 58 (61)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHCCHHHHHHH
T ss_conf 89999999999999867997999999999997968788023055456476
No 384
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=33.57 E-value=18 Score=14.08 Aligned_cols=45 Identities=16% Similarity=0.059 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHHHHCCCC------HHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 8889779999999985999------79999994999889999999999980
Q gi|254780694|r 184 FELTGREVECLTWISEGKT------SDEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 184 ~~LT~RE~eVl~lia~G~t------~~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
..+|+.+.++|+-.=+--. -.+||..|++++.+|+.--.|=..|.
T Consensus 22 t~ft~~Ql~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~~V~vWFqNrR~k~ 72 (93)
T 3a01_A 22 TSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKW 72 (93)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 999999999999999877999999999999996888778899879789999
No 385
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=33.26 E-value=18 Score=14.05 Aligned_cols=45 Identities=11% Similarity=0.115 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHHCC------CCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 88897799999999859------9979999994999889999999999980
Q gi|254780694|r 184 FELTGREVECLTWISEG------KTSDEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 184 ~~LT~RE~eVl~lia~G------~t~~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
..+|+-+.++|+-.=+= ..-.+||..|+||++.|+.--.|=..|.
T Consensus 7 t~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgl~~~qV~~WFQNRR~k~ 57 (68)
T 1zq3_P 7 TTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRH 57 (68)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 999999999999999866998999999999997997568778525488888
No 386
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=33.16 E-value=18 Score=14.04 Aligned_cols=46 Identities=11% Similarity=0.159 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHC------CCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 89779999999985------99979999994999889999999999980799
Q gi|254780694|r 186 LTGREVECLTWISE------GKTSDEIAVILGISRNTVNNYIASIMRKTATK 231 (246)
Q Consensus 186 LT~RE~eVl~lia~------G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~ 231 (246)
.|+-+.++|+-.=. -..-.+||..|++|++.|+..-.|-..|....
T Consensus 18 ~T~~Q~~~Le~~F~~~~~P~~~~~~~LA~~~gl~~~~V~~WFqNrR~k~k~~ 69 (89)
T 2ecb_A 18 KTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALK 69 (89)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999986999999999999998819999998089998877765
No 387
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=33.02 E-value=18 Score=14.03 Aligned_cols=36 Identities=11% Similarity=0.118 Sum_probs=17.8
Q ss_pred CCCCHHH---HHHHHHHHC---C--CCHHHHHHHHCCCHHHHHH
Q ss_conf 8889779---999999985---9--9979999994999889999
Q gi|254780694|r 184 FELTGRE---VECLTWISE---G--KTSDEIAVILGISRNTVNN 219 (246)
Q Consensus 184 ~~LT~RE---~eVl~lia~---G--~t~~eIA~~L~iS~~TV~~ 219 (246)
..||.+. ..+|-.+|. + .|.++||+.++||+..++.
T Consensus 20 Mkls~k~~YAlr~L~~LA~~~~~~~vs~~eIAe~~~ip~~~L~k 63 (159)
T 3lwf_A 20 MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQ 63 (159)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEECHHHHHHHHCCCHHHHHH
T ss_conf 87876586999999999808899819599999878909999999
No 388
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=32.98 E-value=18 Score=14.02 Aligned_cols=46 Identities=13% Similarity=0.185 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHHHCC------CCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf 8897799999999859------997999999499988999999999998079
Q gi|254780694|r 185 ELTGREVECLTWISEG------KTSDEIAVILGISRNTVNNYIASIMRKTAT 230 (246)
Q Consensus 185 ~LT~RE~eVl~lia~G------~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv 230 (246)
.+|+.+.++|+-.=+= ..-.+||..|++++..|+.--.|=..|.--
T Consensus 7 ~ft~~Ql~~Le~~F~~~~yP~~~~r~~LA~~lgl~~~~V~~WFqNrR~k~kk 58 (67)
T 2k40_A 7 AFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKR 58 (67)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHH
T ss_conf 8999999999999987799998999999999495988955816988999987
No 389
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=32.45 E-value=19 Score=13.97 Aligned_cols=13 Identities=46% Similarity=0.629 Sum_probs=5.7
Q ss_pred HHHHHHHHCCCHH
Q ss_conf 7999999499988
Q gi|254780694|r 203 SDEIAVILGISRN 215 (246)
Q Consensus 203 ~~eIA~~L~iS~~ 215 (246)
+.+.++.|++.++
T Consensus 191 ~~~~a~~L~i~~g 203 (243)
T 2wv0_A 191 TTEEANILGIQKG 203 (243)
T ss_dssp CHHHHHHHTSCTT
T ss_pred CHHHHHHHCCCCC
T ss_conf 9999997195999
No 390
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.04 E-value=19 Score=13.92 Aligned_cols=46 Identities=9% Similarity=0.191 Sum_probs=35.2
Q ss_pred CCCCHHHHHHHHH-HHCCC-----CHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 8889779999999-98599-----9799999949998899999999999807
Q gi|254780694|r 184 FELTGREVECLTW-ISEGK-----TSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 184 ~~LT~RE~eVl~l-ia~G~-----t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
..+|+.+.++|+- ..... .-.+||..|+++++.|+..-.|-..|.-
T Consensus 13 ~~~t~~Ql~~Le~~f~~~~~P~~~~~~~LA~~~gl~~~~V~~WF~nrR~~~k 64 (76)
T 2dn0_A 13 NKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCR 64 (76)
T ss_dssp CCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 9899999999999999868999999999999949799999998998899886
No 391
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=31.63 E-value=19 Score=13.88 Aligned_cols=46 Identities=17% Similarity=0.225 Sum_probs=34.6
Q ss_pred CCCCCHHHHHHHHH-HHCCC------CHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 88889779999999-98599------979999994999889999999999980
Q gi|254780694|r 183 DFELTGREVECLTW-ISEGK------TSDEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 183 ~~~LT~RE~eVl~l-ia~G~------t~~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
...+|+-+.++|+- ..+.- .-.+||..|++|++.|+.--.|=..|.
T Consensus 5 r~~fT~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~lgL~~~~V~vWFqNrRak~ 57 (72)
T 1uhs_A 5 AATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEW 57 (72)
T ss_dssp CCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 78889999999999999857998999999999995898888888079888998
No 392
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=30.46 E-value=20 Score=13.76 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=26.5
Q ss_pred HHHHHHHH-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999998-5999799999949998899999999999807998
Q gi|254780694|r 191 VECLTWIS-EGKTSDEIAVILGISRNTVNNYIASIMRKTATKT 232 (246)
Q Consensus 191 ~eVl~lia-~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~ 232 (246)
..+..++. .+++..+||..+|.+-. .|..+.|+|.==.+
T Consensus 62 ~~a~~lL~~~~~~i~~IA~~~Gf~~~---~~f~r~Fk~~~G~s 101 (113)
T 3oio_A 62 NRARQLLQQTSKSIVQIGLACGFSSG---PHFSSTYRNHFNIT 101 (113)
T ss_dssp HHHHHHHHHCCCCHHHHHHHTTCSCH---HHHHHHHHHHHSSC
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCH---HHHHHHHHHHHCCC
T ss_conf 99999977789999999998199988---99999999998919
No 393
>1nr3_A MTH0916, DNA-binding protein TFX; northeast structural genomics consortium, reduced- dimensionality PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.236.1.1
Probab=30.45 E-value=2.7 Score=19.40 Aligned_cols=31 Identities=23% Similarity=0.244 Sum_probs=15.2
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 5999799999949998899999999999807
Q gi|254780694|r 199 EGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 199 ~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
+|+|-.|||..|+-|...|..--++++.+..
T Consensus 4 kG~tQ~eIA~~LgTSraNVs~IEk~A~eNIe 34 (122)
T 1nr3_A 4 RGWSQKKIARELKTTRQNVSAIERKAMENIE 34 (122)
T ss_dssp CSCSSCSTHHHHHHCCSSSCCHHHHHHTTCS
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 5787999999977758899999999999999
No 394
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=30.23 E-value=20 Score=13.73 Aligned_cols=44 Identities=16% Similarity=0.046 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHHHC------CCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 889779999999985------99979999994999889999999999980
Q gi|254780694|r 185 ELTGREVECLTWISE------GKTSDEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 185 ~LT~RE~eVl~lia~------G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
.+|+-+.++|+-+=+ ...-.+||..|++|+..|+.--.|=..|.
T Consensus 8 ~ft~~Ql~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~~V~vWFqNrRak~ 57 (68)
T 1ahd_P 8 TYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKW 57 (68)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 89999999999998608999999999999996999889789648888999
No 395
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=30.08 E-value=20 Score=13.71 Aligned_cols=46 Identities=13% Similarity=0.177 Sum_probs=34.6
Q ss_pred CCCCHHHHHHHHHHHCCC------CHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 888977999999998599------9799999949998899999999999807
Q gi|254780694|r 184 FELTGREVECLTWISEGK------TSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 184 ~~LT~RE~eVl~lia~G~------t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
..+|+-+.++|+-.=+-- +-.+||..|++++..|+.--.|=..|.-
T Consensus 12 t~ft~~Q~~~Le~~F~~~~yP~~~~r~~LA~~lgL~~~~V~~WFqNrR~k~r 63 (80)
T 2cue_A 12 TSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWR 63 (80)
T ss_dssp CCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCHHHHH
T ss_conf 9989999999999998669989999999999979888783361403008898
No 396
>1ocp_A OCT-3; DNA-binding protein; NMR {Mus musculus} SCOP: a.4.1.1
Probab=29.74 E-value=21 Score=13.68 Aligned_cols=45 Identities=18% Similarity=0.167 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHHHHCC------CCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 88897799999999859------9979999994999889999999999980
Q gi|254780694|r 184 FELTGREVECLTWISEG------KTSDEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 184 ~~LT~RE~eVl~lia~G------~t~~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
..+|+-+.++|.-.=+= ..-.+||..|++|+..|+.--.|-..|.
T Consensus 13 t~~t~~q~~~Le~~F~~~~~P~~~~~~~LA~~~~l~~~~V~~WFqNrR~k~ 63 (67)
T 1ocp_A 13 TSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRRQKG 63 (67)
T ss_dssp SSCCHHHHHHHHHHHSSCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHSSS
T ss_pred CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 989999999999998436997999999999995899889779618887777
No 397
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=29.73 E-value=21 Score=13.68 Aligned_cols=41 Identities=20% Similarity=0.232 Sum_probs=35.2
Q ss_pred CCCCHHHHHHHHHHHC-CCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 8889779999999985-9997999999499988999999999
Q gi|254780694|r 184 FELTGREVECLTWISE-GKTSDEIAVILGISRNTVNNYIASI 224 (246)
Q Consensus 184 ~~LT~RE~eVl~lia~-G~t~~eIA~~L~iS~~TV~~hl~~i 224 (246)
..+|+-|.+|+..+.. ..+-.+|+..+++|+..|...|-..
T Consensus 324 ~~~~~~~~~il~~l~~~~~~~d~l~~~~gl~~~~~~~~L~~L 365 (382)
T 3maj_A 324 EPDTGDRTRILALLGPSPVGIDDLIRLSGISPAVVRTILLEL 365 (382)
T ss_dssp CCCTTHHHHHHHHCCSSCEEHHHHHHHHCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 989868999998669999889999999890999999999999
No 398
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=29.72 E-value=21 Score=13.68 Aligned_cols=45 Identities=13% Similarity=0.111 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHHCC------CCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 88897799999999859------9979999994999889999999999980
Q gi|254780694|r 184 FELTGREVECLTWISEG------KTSDEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 184 ~~LT~RE~eVl~lia~G------~t~~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
..+|+-+.++|+-.=+- ..-.+||..|++|+..|+.--.|=..|.
T Consensus 14 t~ft~~Q~~~Le~~F~~~~yP~~~~r~~LA~~lgl~~~qV~vWFqNrR~k~ 64 (77)
T 1nk2_P 14 VLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKT 64 (77)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHCHHHHHHH
T ss_conf 898999999999999877998999999999994988657234162088999
No 399
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=29.60 E-value=21 Score=13.66 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=21.2
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 9999994999889999999999980
Q gi|254780694|r 204 DEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 204 ~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
.+||..|+++++.|+.--.|=..|.
T Consensus 65 ~~LA~~l~l~~~~V~vWFqNrR~k~ 89 (97)
T 1b72_A 65 VEIAATLELNETQVKIWFQNRRMKQ 89 (97)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 9998871999657023148888899
No 400
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=29.22 E-value=21 Score=13.62 Aligned_cols=45 Identities=9% Similarity=0.079 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHHHCC------CCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 88897799999999859------9979999994999889999999999980
Q gi|254780694|r 184 FELTGREVECLTWISEG------KTSDEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 184 ~~LT~RE~eVl~lia~G------~t~~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
..+|+.+.++|.-.=+= ..-.+||..|++++++|+.--.|-..|.
T Consensus 92 ~~~t~~q~~~Le~~f~~~~~p~~~~r~~lA~~~~l~~~~V~~WFqNrR~k~ 142 (146)
T 1au7_A 92 TTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQRE 142 (146)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 756788999999997135998999999999997829899758438776646
No 401
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.17 E-value=21 Score=13.62 Aligned_cols=45 Identities=11% Similarity=0.183 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHHHC------CCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 889779999999985------999799999949998899999999999807
Q gi|254780694|r 185 ELTGREVECLTWISE------GKTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 185 ~LT~RE~eVl~lia~------G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
.+|+-+.++|+-.=. ...-.+||..+++|++.|+.--.|-..|+-
T Consensus 13 ~~t~~Q~~~Le~~F~~~~~P~~~~~~~LA~~~gL~~~qV~~WFqNrR~r~k 63 (75)
T 2da5_A 13 ERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVN 63 (75)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 899999999999999869998999999999929799999997999998776
No 402
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=28.70 E-value=22 Score=13.56 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=18.7
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 99979999994999889999999999980
Q gi|254780694|r 200 GKTSDEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 200 G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
-.|-.++|+.+++|+. |+.++|+|.
T Consensus 93 ~~sl~~la~~~g~S~~----~l~R~Fk~~ 117 (133)
T 1u8b_A 93 PVTLEALADQVAMSPF----HLHRLFKAT 117 (133)
T ss_dssp CCCHHHHHHHHTSCHH----HHHHHHHHH
T ss_pred CCCHHHHHHHCCCCHH----HHHHHHHHH
T ss_conf 9999999426198999----999999999
No 403
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, nysgrc, NEW YORK structural genomix research consortium; 2.00A {Bermanella marisrubri}
Probab=28.56 E-value=22 Score=13.55 Aligned_cols=125 Identities=10% Similarity=0.059 Sum_probs=67.5
Q ss_pred CCCCHHHEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEECC
Q ss_conf 97210110002214458888765530232137999973279999999999999871930230002666311123210006
Q gi|254780694|r 1 MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80 (246)
Q Consensus 1 ~~~~~~~~~~~l~r~d~~r~~~v~~l~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~ 80 (246)
||++..+ +|++-.+|+.-...+...+..... .+..+.+..+....+.. . .+.....+..++.
T Consensus 1 M~~~~~k-rILiVDDd~~~~~~l~~~L~~~g~--~v~~a~~g~eal~~l~~----~-----------~pdlillD~~mP~ 62 (132)
T 3lte_A 1 MSLKQSK-RILVVDDDQAMAAAIERVLKRDHW--QVEIAHNGFDAGIKLST----F-----------EPAIMTLDLSMPK 62 (132)
T ss_dssp ------C-EEEEECSCHHHHHHHHHHHHHTTC--EEEEESSHHHHHHHHHH----T-----------CCSEEEEESCBTT
T ss_pred CCCCCCC-EEEEEECCHHHHHHHHHHHHHCCC--EEEEECCHHHHHHHHHH----C-----------CCCEEEEECCCCC
T ss_conf 9988898-699997999999999999998899--99998899999999974----7-----------9999999689878
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCC
Q ss_conf 8958999999966984517389999852324430325433332144571475033736899999997178
Q gi|254780694|r 81 DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPK 150 (246)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (246)
..+.+..+.+.........+++-. . .............++.+|+.++++.......+..+-..
T Consensus 63 ~dG~el~~~ir~~~~~~~~~Iil~---s----~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~ll~~ 125 (132)
T 3lte_A 63 LDGLDVIRSLRQNKVANQPKILVV---S----GLDKAKLQQAVTEGADDYLEKPFDNDALLDRIHDLVNE 125 (132)
T ss_dssp BCHHHHHHHHHTTTCSSCCEEEEE---C----CSCSHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHCCCCCCCCEEEE---E----CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
T ss_conf 889999999984588898918999---5----59999999999879989998989999999999999957
No 404
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=28.40 E-value=22 Score=13.53 Aligned_cols=45 Identities=11% Similarity=0.159 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHHHHHCC------CCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 88897799999999859------9979999994999889999999999980
Q gi|254780694|r 184 FELTGREVECLTWISEG------KTSDEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 184 ~~LT~RE~eVl~lia~G------~t~~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
..+|+-+.++|+-.=.- ..-.++|..|++|+..|+.--.|=..|.
T Consensus 23 t~ft~~Q~~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~~V~~WFqNrR~k~ 73 (81)
T 1fjl_A 23 TTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARL 73 (81)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 988999999999999886999989999999992999889167524477888
No 405
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=28.39 E-value=22 Score=13.53 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 9999994999889999999999980
Q gi|254780694|r 204 DEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 204 ~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
.+||..+++|++.|+.--.|=..|+
T Consensus 56 ~~LA~~~gLs~~qV~~WFqNrR~k~ 80 (96)
T 3nar_A 56 DKLAKESGLARTDIVSWFGDTRYAW 80 (96)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 9999996989999999899999999
No 406
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, metal transport, zinc, iron, repressor, cytoplasm, DNA-binding; 2.60A {Vibrio cholerae}
Probab=28.32 E-value=22 Score=13.52 Aligned_cols=48 Identities=17% Similarity=0.180 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHH--HCC--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHHCC
Q ss_conf 8888897799999999--859--9979999994-----99988999999999998079
Q gi|254780694|r 182 KDFELTGREVECLTWI--SEG--KTSDEIAVIL-----GISRNTVNNYIASIMRKTAT 230 (246)
Q Consensus 182 ~~~~LT~RE~eVl~li--a~G--~t~~eIA~~L-----~iS~~TV~~hl~~i~~KLgv 230 (246)
....+|+.=..|+.++ .++ .|..||-+.| .||..||..-|. .+.+.|+
T Consensus 11 ~G~r~T~qR~~Il~~l~~~~~~h~sa~el~~~l~~~~~~i~~aTVYR~L~-~l~~~gi 67 (150)
T 2w57_A 11 AGLKVTLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLN-QFDDAGI 67 (150)
T ss_dssp TTCCCCHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHH-HHHHTTS
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHH-HHHHHHE
T ss_conf 69998999999999998389999999999999986188867799999999-9987546
No 407
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=28.25 E-value=22 Score=13.51 Aligned_cols=24 Identities=4% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 999999499988999999999998
Q gi|254780694|r 204 DEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 204 ~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
.+||..|+++++.|+..-.|=..|
T Consensus 32 ~~La~~lgl~~~qV~~WF~NrR~k 55 (64)
T 1x2m_A 32 EGLSKQLDWDVRSIQRWFRQRRNQ 55 (64)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHCCHHHHCC
T ss_conf 999999498989988805854544
No 408
>1hkq_A REPA, replication protein; DNA binding protein, winged-helix, PPS10 plasmid, replication initiator dimer.; 2.75A {Pseudomonas syringae PV} SCOP: a.4.5.10
Probab=27.55 E-value=23 Score=13.44 Aligned_cols=44 Identities=18% Similarity=0.136 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHCCC--------------CHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 88977999999998599--------------979999994999889999999999980
Q gi|254780694|r 185 ELTGREVECLTWISEGK--------------TSDEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 185 ~LT~RE~eVl~lia~G~--------------t~~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
.||..|..++-++..-. +..+.+...+++.+++-..++++..+|
T Consensus 18 ~Lt~~E~rll~~~is~i~~~~~~~~~~~~~i~~~e~~~~~~~~~~~~y~~lk~a~~~L 75 (132)
T 1hkq_A 18 TLTLNEKRLVLCAASLIDSRKPLPKDGYLTIRADTFAEVFGIDVKHAYAALDDAATKL 75 (132)
T ss_dssp TSCHHHHHHHHHHHHTCCTTSCCCGGGEEEEEHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 5998999999999998455799988967999999999997899117999999999998
No 409
>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, transcription regulation, redox poise, DNA-binding, NAD, NADH; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*
Probab=27.19 E-value=23 Score=13.39 Aligned_cols=21 Identities=14% Similarity=0.264 Sum_probs=0.0
Q ss_pred CHHHHHHHHCCCHHHHHHHHH
Q ss_conf 979999994999889999999
Q gi|254780694|r 202 TSDEIAVILGISRNTVNNYIA 222 (246)
Q Consensus 202 t~~eIA~~L~iS~~TV~~hl~ 222 (246)
|++++|+.+++++.+||.-++
T Consensus 35 SS~~La~~~gi~~~qvRkDls 55 (215)
T 2vt3_A 35 SSAELSDAVKVDSATIRRDFS 55 (215)
T ss_dssp CHHHHHHHHCCCHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHH
T ss_conf 799999996989999999999
No 410
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=27.13 E-value=23 Score=13.39 Aligned_cols=51 Identities=16% Similarity=0.171 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCH---------HHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 467798888897799999999859997---------999999499988999999999998
Q gi|254780694|r 177 DVHWGKDFELTGREVECLTWISEGKTS---------DEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 177 ~~~~~~~~~LT~RE~eVl~lia~G~t~---------~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
.....+...+|+...++|+-.-.-..+ .+||..+++|+..|+.-..|-.+|
T Consensus 25 ~~~~~r~~rft~~q~~~Le~~f~~~~~nPYPs~~~~~~La~~~gL~~~qV~~WF~N~R~r 84 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRK 84 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCC
T ss_conf 778888898999999999999998588899599999999999784999998978860144
No 411
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=26.78 E-value=23 Score=13.35 Aligned_cols=24 Identities=8% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 999999499988999999999998
Q gi|254780694|r 204 DEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 204 ~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
.+||..|+++++.|+.--.|=..|
T Consensus 40 ~~LA~~~~l~~~qV~~WF~NrR~k 63 (72)
T 2cqx_A 40 KGLSKQLDWSVRKIQCWFRHRRNQ 63 (72)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 999999794999999999986875
No 412
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=26.44 E-value=21 Score=13.65 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHCCCHH-HHHHHHHHHHHHH
Q ss_conf 999999499988-9999999999980
Q gi|254780694|r 204 DEIAVILGISRN-TVNNYIASIMRKT 228 (246)
Q Consensus 204 ~eIA~~L~iS~~-TV~~hl~~i~~KL 228 (246)
.+||+.|++.+. ++-.+++++|.|.
T Consensus 61 ~~va~~lg~~~~~~~~~~Lk~~Y~k~ 86 (96)
T 2jxj_A 61 SKVGSRLGYLPGKGTGSLLKSHYERI 86 (96)
T ss_dssp HHHHHHHTCCSCSCHHHHHHHHHTTT
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 99999868898786899999999999
No 413
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=26.30 E-value=24 Score=13.29 Aligned_cols=25 Identities=12% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 9999994999889999999999980
Q gi|254780694|r 204 DEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 204 ~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
.+||..|+++++.|+.--.|=..|+
T Consensus 34 ~~LA~~lgl~~~~V~~WFqNrRak~ 58 (73)
T 2hi3_A 34 CLIAAEAGLTEEQTQKWFKQRLAEW 58 (73)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHCCHHHHHHH
T ss_conf 9999995998778645439871888
No 414
>2heo_A Z-DNA binding protein 1; protein DLM1/Z-DNA complex, immune system/DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=26.21 E-value=24 Score=13.28 Aligned_cols=45 Identities=11% Similarity=0.189 Sum_probs=0.0
Q ss_pred CHHHHHHHHHH-HCC--CCHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 97799999999-859--9979999994999889999999999980799
Q gi|254780694|r 187 TGREVECLTWI-SEG--KTSDEIAVILGISRNTVNNYIASIMRKTATK 231 (246)
Q Consensus 187 T~RE~eVl~li-a~G--~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~ 231 (246)
.+-|..||+.+ -+| .+..++|.+|.+.-++|+.-+-++..|..++
T Consensus 9 qd~EQrILq~L~e~G~~~~a~~La~k~~VPKk~lNrVLY~L~k~gKl~ 56 (67)
T 2heo_A 9 DNLEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVS 56 (67)
T ss_dssp CHHHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEE
T ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
T ss_conf 578999999999758810399999997888889999999998666535
No 415
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.12 E-value=24 Score=13.27 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=0.0
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 999999499988999999999998
Q gi|254780694|r 204 DEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 204 ~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
.+||..|+++++.|+.--.|=..|
T Consensus 44 ~~La~~~gL~~~~V~~WFqNrR~k 67 (89)
T 2dmp_A 44 DRLRVETKLSRREIDSWFSERRKL 67 (89)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 999999598999999989999986
No 416
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix- turn-helix, UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=25.96 E-value=24 Score=13.25 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=0.0
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 97999999499988999999999998
Q gi|254780694|r 202 TSDEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 202 t~~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
|-.|+|+.+++|..||+.=+..+-..
T Consensus 38 sE~eLa~~~~VSR~TVR~Al~~L~~e 63 (248)
T 3f8m_A 38 AEREIAEQFEVARETVRQALRELLID 63 (248)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 79999999797999999999999977
No 417
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.82 E-value=24 Score=13.24 Aligned_cols=25 Identities=12% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 9999994999889999999999980
Q gi|254780694|r 204 DEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 204 ~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
.+||..++++++.|+..-.|=..|.
T Consensus 36 ~~La~~~~L~~~~V~~WFqNrRak~ 60 (71)
T 2da7_A 36 LKISIAVGLPQEFVKEWFEQRKVYQ 60 (71)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 9999998809899899627504134
No 418
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=25.58 E-value=25 Score=13.21 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 9999994999889999999999980
Q gi|254780694|r 204 DEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 204 ~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
.+||..|+++++.|+.--.|=..|.
T Consensus 59 ~~La~~lgl~~~~V~vWFQNrRak~ 83 (88)
T 2r5y_A 59 IEIAHALSLTERQIKIWFQNRRMKW 83 (88)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCEEEHHHHHHHHH
T ss_conf 9999997879133510124367787
No 419
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=25.41 E-value=25 Score=13.19 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=0.0
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 9999994999889999999999980
Q gi|254780694|r 204 DEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 204 ~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
.+||..|++|+..|+.--.|-..|.
T Consensus 48 ~~LA~~lgl~~~~I~~WF~NrR~k~ 72 (80)
T 2da3_A 48 DHIAHEVGLKKRVVQVWFQNTRARE 72 (80)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 9999997909999589569888888
No 420
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structure initiative, PSI-2; 2.00A {Colwellia psychrerythraea 34H}
Probab=25.23 E-value=25 Score=13.17 Aligned_cols=135 Identities=8% Similarity=-0.021 Sum_probs=0.0
Q ss_pred CCCCHH-HEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEC
Q ss_conf 972101-1000221445888876553023213799997327999999999999987193023000266631112321000
Q gi|254780694|r 1 MNFEIQ-QVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79 (246)
Q Consensus 1 ~~~~~~-~~~~~l~r~d~~r~~~v~~l~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~ 79 (246)
||+... +.+|++-.+++.-...+...+........+..+.+..+....+.. ..+.....+..++
T Consensus 1 ms~~~~n~~~ILiVDD~~~~~~~l~~~L~~~~~~~~v~~a~~g~eAl~~~~~---------------~~pDlillD~~mP 65 (143)
T 3cnb_A 1 MSLNVKNDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHT---------------VKPDVVMLDLMMV 65 (143)
T ss_dssp --------CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHH---------------TCCSEEEEETTCT
T ss_pred CCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHH---------------CCCCEEEEECCCC
T ss_conf 9988789999999919999999999999827898089998999999999972---------------7999999808889
Q ss_pred CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCH
Q ss_conf 68958999999966984517389999852324430325433332144571475033736899999997178754698
Q gi|254780694|r 80 SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILR 156 (246)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (246)
...+.++.+..........-|+ ..................++.+|+.++++.......+..+-......++
T Consensus 66 ~~dG~el~~~ir~~~~~~~ipv------I~lt~~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~~~~E 136 (143)
T 3cnb_A 66 GMDGFSICHRIKSTPATANIIV------IAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQKKATSE 136 (143)
T ss_dssp TSCHHHHHHHHHTSTTTTTSEE------EEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTTC----
T ss_pred CCCHHHHHHHHHHCCCCCCCEE------EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCHHHCC
T ss_conf 9986999999984788899849------9998489989999999769989998989999999999999971576517
No 421
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=25.18 E-value=25 Score=13.16 Aligned_cols=25 Identities=16% Similarity=0.356 Sum_probs=0.0
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 9999994999889999999999980
Q gi|254780694|r 204 DEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 204 ~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
.+||..|++|+..|+.--.|-..|.
T Consensus 38 ~~La~~~~l~~~qV~~WF~NrR~r~ 62 (70)
T 2da1_A 38 KEMADKSGLPQKVIKHWFRNTLFKE 62 (70)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 9999997919999889779888865
No 422
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=24.80 E-value=25 Score=13.12 Aligned_cols=41 Identities=10% Similarity=0.235 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHCC--CCHHHHHHHHCCCH-HHHHHHHHHHHHH
Q ss_conf 97799999999859--99799999949998-8999999999998
Q gi|254780694|r 187 TGREVECLTWISEG--KTSDEIAVILGISR-NTVNNYIASIMRK 227 (246)
Q Consensus 187 T~RE~eVl~lia~G--~t~~eIA~~L~iS~-~TV~~hl~~i~~K 227 (246)
++.|..|+..+-.. -|.-.||..|+++. +-|+.+|-++-+|
T Consensus 10 ~~~~ekI~~~L~~~~~stAl~iAk~LGl~kakeVN~~LY~L~k~ 53 (79)
T 1xmk_A 10 AEIKEKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQ 53 (79)
T ss_dssp HHHHHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf 78999999999966995399999992997267774999999976
No 423
>1rep_C REPE54, protein (replication initiation protein); replication initiator, DNA-binding,, replication/DNA complex; HET: DNA; 2.60A {Escherichia coli} SCOP: a.4.5.10 a.4.5.10 PDB: 2z9o_A*
Probab=24.37 E-value=26 Score=13.07 Aligned_cols=46 Identities=17% Similarity=0.298 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHH------CC----------CCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 888977999999998------59----------99799999949998899999999999807
Q gi|254780694|r 184 FELTGREVECLTWIS------EG----------KTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 184 ~~LT~RE~eVl~lia------~G----------~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
..||..|..++.++. ++ .+..|.+..++++.++....++++..+|.
T Consensus 29 y~lt~~E~rll~~~i~~i~~~~~~~~~~~~~~~i~~~e~~~~~~i~~~~~y~~lk~a~~~L~ 90 (251)
T 1rep_C 29 YSLSRDQKRMLYLFVDQIRKSDGTLQEHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSFA 90 (251)
T ss_dssp CCCCHHHHHHHHHHHHHHHTC------CCCEEEEEHHHHHHHTTCCHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 58999999999999995430357767778459999999999977771679999999999996
No 424
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=24.35 E-value=26 Score=13.06 Aligned_cols=133 Identities=14% Similarity=0.015 Sum_probs=0.0
Q ss_pred CCCCHHH-EEEEECCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEC
Q ss_conf 9721011-000221445888876553023213799997327999999999999987193023000266631112321000
Q gi|254780694|r 1 MNFEIQQ-VNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVS 79 (246)
Q Consensus 1 ~~~~~~~-~~~~l~r~d~~r~~~v~~l~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~ 79 (246)
||-+-.. -+|++-.+++.-...+...+....+-..+..+.+..+....+....+. .....+.....+..+.
T Consensus 1 m~~~~~pp~~ILiVdD~~~~~~~l~~~L~~~g~~~~v~~~~~g~eAl~~l~~~~~~--------~~~~~pdlillD~~mP 72 (149)
T 1i3c_A 1 MSDESNPPKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEY--------ENSPRPNLILLDLNLP 72 (149)
T ss_dssp -----CCCEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGG--------TTCCCCSEEEECSCCS
T ss_pred CCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCHH--------HCCCCCCEEEEECCCC
T ss_conf 97999999989999799999999999999769984799989999999999850022--------1268988899848999
Q ss_pred CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHH
Q ss_conf 68958999999966984517389999852324430325433332144571475033736899999997
Q gi|254780694|r 80 SDWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147 (246)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (246)
...+.+..+.+........-|+ ..................++.+|+.+++........+...
T Consensus 73 ~~~G~el~~~ir~~~~~~~iPv------I~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~i 134 (149)
T 1i3c_A 73 KKDGREVLAEIKQNPDLKRIPV------VVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGI 134 (149)
T ss_dssp SSCHHHHHHHHHHCTTTTTSCE------EEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCCCCCCCE------EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
T ss_conf 9864999999985804479988------9995689999999999879989997989999999999999
No 425
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=24.16 E-value=26 Score=13.04 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=0.0
Q ss_pred CCHHHHHHHHCCCHHH-HHHHHHHHHHHH
Q ss_conf 9979999994999889-999999999980
Q gi|254780694|r 201 KTSDEIAVILGISRNT-VNNYIASIMRKT 228 (246)
Q Consensus 201 ~t~~eIA~~L~iS~~T-V~~hl~~i~~KL 228 (246)
+|-.|--++|++++.+ =..-|+..|+||
T Consensus 11 Mt~~eA~~iLgl~~~a~t~~~Ik~ayr~l 39 (71)
T 2guz_A 11 MNSKEALQILNLTENTLTKKKLKEVHRKI 39 (71)
T ss_dssp CCHHHHHHHTTCCTTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf 69999999829999978999999999999
No 426
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=24.08 E-value=26 Score=13.03 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=0.0
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99799999949998899999999
Q gi|254780694|r 201 KTSDEIAVILGISRNTVNNYIAS 223 (246)
Q Consensus 201 ~t~~eIA~~L~iS~~TV~~hl~~ 223 (246)
+|.+|.|+.++|+++|++.....
T Consensus 17 LTi~EAa~Y~gIg~~klr~L~~e 39 (70)
T 1y6u_A 17 LTIEEASKYFRIGENKLRRLAEE 39 (70)
T ss_dssp EEHHHHHHHTCSCHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 38999999969279999999984
No 427
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.89 E-value=26 Score=13.01 Aligned_cols=24 Identities=13% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 999999499988999999999998
Q gi|254780694|r 204 DEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 204 ~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
.+||..+++|++.|+.--.|=..|
T Consensus 34 ~~LA~~~~l~~~qV~~WFqNrRak 57 (64)
T 2e19_A 34 SKIADSVNLPLDVVKKWFEKMQAG 57 (64)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCC
T ss_conf 999999880989945840400126
No 428
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens}
Probab=23.78 E-value=27 Score=12.99 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=0.0
Q ss_pred CCCCCCCC-HHHHHHHHHHHCC--CCHHHHHHHHCCCHHH-HHHHHHHHHHH
Q ss_conf 79888889-7799999999859--9979999994999889-99999999998
Q gi|254780694|r 180 WGKDFELT-GREVECLTWISEG--KTSDEIAVILGISRNT-VNNYIASIMRK 227 (246)
Q Consensus 180 ~~~~~~LT-~RE~eVl~lia~G--~t~~eIA~~L~iS~~T-V~~hl~~i~~K 227 (246)
+...+.+| .+|.+|++.+-.- .+.=-||..+|++..+ |+.++-..-++
T Consensus 1 hmaspq~~~~~kekI~~fL~~~gps~AL~IAKnlGl~takdVN~~Ly~lekq 52 (72)
T 3eyi_A 1 HMASPQFSQQREEDIYRFLKDNGPQRALVIAQALGMRTAKDVNRDLYRMKSR 52 (72)
T ss_dssp ---CCCCSSHHHHHHHHHHHHHCSEEHHHHHHHTTCCSGGGTHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 9776777898899999999966982588999885823177765999999983
No 429
>2key_A Putative phage integrase; protein structure, PSI, NESG, structural genomics, unknown function, protein structure initiative; NMR {Bacteroides fragilis nctc 9343}
Probab=23.42 E-value=27 Score=12.95 Aligned_cols=27 Identities=11% Similarity=0.185 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
Q ss_conf 999889999999999980799889999999975898
Q gi|254780694|r 211 GISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 (246)
Q Consensus 211 ~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~Gli 246 (246)
++|++||..|++.+.. ...+|++.|+|
T Consensus 69 ~~s~~Ti~~~l~~lr~---------~~~~A~~~g~i 95 (112)
T 2key_A 69 CNADSTAQRNLSTIKI---------YVSAAIKKGYM 95 (112)
T ss_dssp CCCHHHHHHHHHHHHH---------HHHHHHHTTSC
T ss_pred CCCHHHHHHHHHHHHH---------HHHHHHHCCCC
T ss_conf 7770366999999999---------99999988794
No 430
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=23.12 E-value=27 Score=12.91 Aligned_cols=28 Identities=14% Similarity=0.247 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 5999799999949998899999999999
Q gi|254780694|r 199 EGKTSDEIAVILGISRNTVNNYIASIMR 226 (246)
Q Consensus 199 ~G~t~~eIA~~L~iS~~TV~~hl~~i~~ 226 (246)
++.|..+|+..|+|.-+-++.++-.++.
T Consensus 28 ~~iTAi~Is~kL~i~K~~INrQLYkL~~ 55 (75)
T 1sfu_A 28 DYTTAISLSNRLKINKKKINQQLYKLQK 55 (75)
T ss_dssp CEECHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 4221999998863008788899999986
No 431
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.05 E-value=27 Score=12.90 Aligned_cols=47 Identities=21% Similarity=0.349 Sum_probs=0.0
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf 98888897799999999859997999999499988999999999998079
Q gi|254780694|r 181 GKDFELTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTAT 230 (246)
Q Consensus 181 ~~~~~LT~RE~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv 230 (246)
.....+|.-+.+..+-|...+.+.+. |++.+..-+-.++..|+||.+
T Consensus 7 gssasftkeqadairrirnskdswdm---lgvkpgasrdevnkayrklav 53 (90)
T 2ys8_A 7 GSSASFTKEQADAIRRIRNSKDSWDM---LGVKPGASRDEVNKAYRKLAV 53 (90)
T ss_dssp CCCCCCCHHHHHHHHHHHTCSSHHHH---HTCCTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCHHH---HCCCCCCCHHHHHHHHHHHHH
T ss_conf 87521109888999998715411887---477888568899999998887
No 432
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=22.91 E-value=28 Score=12.89 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 9999994999889999999999980
Q gi|254780694|r 204 DEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 204 ~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
.+||..|++++..|+..-.|=..|.
T Consensus 130 ~~lA~~l~l~~~~V~vWF~NrR~k~ 154 (164)
T 2xsd_C 130 TGLADSLQLEKEVVRVWFCNRRQKE 154 (164)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 9999997849898689728876898
No 433
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=22.91 E-value=28 Score=12.89 Aligned_cols=25 Identities=16% Similarity=0.076 Sum_probs=0.0
Q ss_pred HHHHHHHCCCHH--HHHHHHHHHHHHH
Q ss_conf 999999499988--9999999999980
Q gi|254780694|r 204 DEIAVILGISRN--TVNNYIASIMRKT 228 (246)
Q Consensus 204 ~eIA~~L~iS~~--TV~~hl~~i~~KL 228 (246)
.+||+.|++... ++-..++++|.|.
T Consensus 77 ~~va~~lg~p~~~~~~~~~Lk~~Y~k~ 103 (128)
T 1c20_A 77 QEIIKGLHLPSSITSAAFTLRTQYMKY 103 (128)
T ss_dssp HHHHHHTCCCSSCCSHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 999998789988787999999999999
No 434
>2g7h_A Methylated-DNA--protein-cysteine methyltransferase; protein structure, DNA repair, DNA methyltransferase; NMR {Methanocaldococcus jannaschii}
Probab=21.87 E-value=29 Score=12.75 Aligned_cols=22 Identities=27% Similarity=0.208 Sum_probs=0.0
Q ss_pred CHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9799999949998899999999
Q gi|254780694|r 202 TSDEIAVILGISRNTVNNYIAS 223 (246)
Q Consensus 202 t~~eIA~~L~iS~~TV~~hl~~ 223 (246)
|+.+||..++.|.+.|-+.+++
T Consensus 98 TYg~iA~~~g~~~RaVg~A~~~ 119 (167)
T 2g7h_A 98 TYGDIAKKLNTSPRAVGMALKR 119 (167)
T ss_dssp EHHHHHHHHTSCHHHHHHHHHT
T ss_pred CHHHHHHHCCCCHHHHHHHHHC
T ss_conf 4899997769966899999862
No 435
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=21.79 E-value=29 Score=12.74 Aligned_cols=20 Identities=20% Similarity=0.312 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCCHHHHHHHH
Q ss_conf 99999998599979999994
Q gi|254780694|r 191 VECLTWISEGKTSDEIAVIL 210 (246)
Q Consensus 191 ~eVl~lia~G~t~~eIA~~L 210 (246)
.+|-+.+.+|+|++||=..|
T Consensus 50 ~~I~~~i~~G~sd~eI~~~l 69 (84)
T 2hl7_A 50 KQIYGQLQQGKSDGEIVDYM 69 (84)
T ss_dssp HHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHH
T ss_conf 99999999699999999999
No 436
>2wvf_A Hpnikr, putative nickel-responsive regulator; transcription factor, transcription regulation, RHH, DNA-binding, transcription, metal-binding; 1.60A {Helicobacter pylori} PDB: 2wvc_A 2ca9_A 2cad_A* 2caj_A 2wvd_A 2wve_A* 2wvb_A
Probab=21.62 E-value=29 Score=12.72 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 9999998079988999999997
Q gi|254780694|r 221 IASIMRKTATKTRSGAIAYAVR 242 (246)
Q Consensus 221 l~~i~~KLgv~~R~eav~~A~~ 242 (246)
+-++..+.|-.||++++.-|++
T Consensus 25 lD~~i~~~Gy~nRSeaIRdair 46 (148)
T 2wvf_A 25 LDNRIIKNGYSSRSELVRDMIR 46 (148)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9999998099868899999999
No 437
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A
Probab=21.38 E-value=30 Score=12.69 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=0.0
Q ss_pred HCCCCHHHHHHHHCCCHHHH
Q ss_conf 85999799999949998899
Q gi|254780694|r 198 SEGKTSDEIAVILGISRNTV 217 (246)
Q Consensus 198 a~G~t~~eIA~~L~iS~~TV 217 (246)
.+|+|-+|.|+..++|..|+
T Consensus 21 ~~gltl~eLA~~~GvS~~~l 40 (198)
T 2bnm_A 21 QVKMDHAALASLLGETPETV 40 (198)
T ss_dssp HTTCCHHHHHHHHTCCHHHH
T ss_pred HCCCCHHHHHHHHCCCHHHH
T ss_conf 85999999998879799999
No 438
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=21.30 E-value=30 Score=12.68 Aligned_cols=53 Identities=11% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
Q ss_conf 799999999859997999999499988999999999998079988999999997589
Q gi|254780694|r 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 (246)
Q Consensus 189 RE~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~Gl 245 (246)
.|.=+..-...|+|-.+||+.+|.|+- ++..++.--..-+..+|-..+...||
T Consensus 15 te~Il~AK~~KGlTwe~IAe~vG~S~v----~vaaa~lGQ~~l~~e~A~~l~~~LgL 67 (156)
T 1dw9_A 15 ADAILLSKAKKDLSFAEIADGTGLAEA----FVTAALLGQQALPADAARLVGAKLDL 67 (156)
T ss_dssp HHHHHHHHHHTTCCHHHHHTTSSSCHH----HHHHHHTTSSCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHH----HHHHHHHCCCCCCHHHHHHHHHHCCC
T ss_conf 999999999849999999999797999----99999845777998999999985499
No 439
>3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; 2.70A {Haemophilus influenzae}
Probab=21.29 E-value=26 Score=13.08 Aligned_cols=25 Identities=16% Similarity=0.359 Sum_probs=0.0
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCH
Q ss_conf 97999999499988999999999998079988
Q gi|254780694|r 202 TSDEIAVILGISRNTVNNYIASIMRKTATKTR 233 (246)
Q Consensus 202 t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R 233 (246)
||.||++.++.++.. |+.|+|+++|
T Consensus 25 ~n~e~~~~~~~~~~~-------i~~~~GI~~R 49 (323)
T 3il3_A 25 TNADLEKMVDTSDEW-------IVTRSGIRER 49 (323)
T ss_dssp EHHHHHTTSSCCHHH-------HHHHTCCCEE
T ss_pred CHHHHHHHCCCCHHH-------HHHHCCCEEE
T ss_conf 299999770998889-------8870392799
No 440
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=21.04 E-value=30 Score=12.65 Aligned_cols=124 Identities=6% Similarity=0.027 Sum_probs=0.0
Q ss_pred CCCCHHHEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEECC
Q ss_conf 97210110002214458888765530232137999973279999999999999871930230002666311123210006
Q gi|254780694|r 1 MNFEIQQVNIVLNREDEQRTSFVSHLPTRSDLLARMIPLDCTVSWTMRMYALTEYVGASHFLLVRWDLFQEQKLDSIVSS 80 (246)
Q Consensus 1 ~~~~~~~~~~~l~r~d~~r~~~v~~l~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~ 80 (246)
|++.-.+.+|++-.+|+.-...+...+...+. .+..+.+..+....+ ....+.....+..+..
T Consensus 1 m~~~~~~~kILiVDDd~~~~~~l~~~L~~~G~--~v~~a~~~~~al~~l---------------~~~~~DlillD~~mP~ 63 (154)
T 3gt7_A 1 MSLSNRAGEILIVEDSPTQAEHLKHILEETGY--QTEHVRNGREAVRFL---------------SLTRPDLIISDVLMPE 63 (154)
T ss_dssp ------CCEEEEECSCHHHHHHHHHHHHTTTC--EEEEESSHHHHHHHH---------------TTCCCSEEEEESCCSS
T ss_pred CCCCCCCCEEEEEECCHHHHHHHHHHHHHCCC--EEEEECCHHHHHHHH---------------HHCCCCEEEEECCCCC
T ss_conf 98999999099997999999999999998799--999989999999999---------------8389999998089999
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHH
Q ss_conf 8958999999966984517389999852324430325433332144571475033736899999997
Q gi|254780694|r 81 DWPFDLVRCMALSEKDKYYNVLQRPTELFCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLL 147 (246)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (246)
..+.++++.+........-|+ ..................++.+|+.+++........+...
T Consensus 64 ~dG~el~~~ir~~~~~~~iPi------I~lTa~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~ 124 (154)
T 3gt7_A 64 MDGYALCRWLKGQPDLRTIPV------ILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRL 124 (154)
T ss_dssp SCHHHHHHHHHHSTTTTTSCE------EEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCCCCEE------EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
T ss_conf 988799999985845579959------9998269999999999779887997989999999999999
No 441
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=20.93 E-value=30 Score=12.63 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=0.0
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 9999994999889999999999980
Q gi|254780694|r 204 DEIAVILGISRNTVNNYIASIMRKT 228 (246)
Q Consensus 204 ~eIA~~L~iS~~TV~~hl~~i~~KL 228 (246)
.++|..|+++++.|+.--.|=..|+
T Consensus 44 ~~LA~~l~l~~~qVkvWFqNrRak~ 68 (77)
T 1puf_A 44 YEVARLLNLTERQVKIWFQNRRMKM 68 (77)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 9999990998788679738888999
No 442
>2ezk_A Transposase; DNA-binding protein, transposition, transposable element; NMR {Enterobacteria phage MU} SCOP: a.4.1.2 PDB: 2ezl_A
Probab=20.79 E-value=30 Score=12.61 Aligned_cols=34 Identities=12% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCC----HHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 999999985999----7999999499988999999999
Q gi|254780694|r 191 VECLTWISEGKT----SDEIAVILGISRNTVNNYIASI 224 (246)
Q Consensus 191 ~eVl~lia~G~t----~~eIA~~L~iS~~TV~~hl~~i 224 (246)
.+|-.|+-.|.+ ...+|..-+||++|++++...+
T Consensus 40 ~~V~~L~~~G~~~~~A~~~vA~~~~vs~~TL~nW~~~V 77 (99)
T 2ezk_A 40 QAADEMLNQGISTKTAFATVAGHYQVSASTLRDKYYQV 77 (99)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999998599589999999999698899999999996
No 443
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=20.72 E-value=17 Score=14.23 Aligned_cols=23 Identities=43% Similarity=0.527 Sum_probs=0.0
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 97999999499988999999999
Q gi|254780694|r 202 TSDEIAVILGISRNTVNNYIASI 224 (246)
Q Consensus 202 t~~eIA~~L~iS~~TV~~hl~~i 224 (246)
|-.++|..+++|..||+.=+..+
T Consensus 42 sE~~La~~~~VSR~TvR~Al~~L 64 (247)
T 2ra5_A 42 NEIELAARLGLSRPTVRQAIQSL 64 (247)
T ss_dssp -----------------------
T ss_pred CHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 89999988697989999999999
No 444
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for structural proteomics; NMR {Agrobacterium tumefaciens str}
Probab=20.71 E-value=25 Score=13.14 Aligned_cols=19 Identities=42% Similarity=0.447 Sum_probs=0.0
Q ss_pred HHCCCCHHHHHHHHHHCCC
Q ss_conf 8079988999999997589
Q gi|254780694|r 227 KTATKTRSGAIAYAVRNNI 245 (246)
Q Consensus 227 KLgv~~R~eav~~A~~~Gl 245 (246)
||--.++.+||++|.++||
T Consensus 55 ~L~F~skE~Ai~yA~k~g~ 73 (106)
T 2jya_A 55 KLTFETQEQAEAYAQRKGI 73 (106)
T ss_dssp EEEESSHHHHHHHHHHHTC
T ss_pred EEEECCHHHHHHHHHHCCC
T ss_conf 8875899999999998698
No 445
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=20.68 E-value=31 Score=12.60 Aligned_cols=46 Identities=17% Similarity=0.246 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHCCCCH---------HHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 8888897799999999859997---------999999499988999999999998
Q gi|254780694|r 182 KDFELTGREVECLTWISEGKTS---------DEIAVILGISRNTVNNYIASIMRK 227 (246)
Q Consensus 182 ~~~~LT~RE~eVl~lia~G~t~---------~eIA~~L~iS~~TV~~hl~~i~~K 227 (246)
+...+|+...+||+-.-.-... .+||..+++|...|+.--.|-..|
T Consensus 1 r~~Rft~~q~~~L~~~f~~~~~~PyP~~~er~~La~~~gL~~~qV~~WF~N~R~R 55 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRK 55 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCC
T ss_conf 9898999999999999998689899699999999999880999999988987514
No 446
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=20.41 E-value=31 Score=12.56 Aligned_cols=42 Identities=19% Similarity=0.151 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHCCC-CHHHHHHHH-----CCCHHHHHHHHHHHHHH
Q ss_conf 8977999999998599-979999994-----99988999999999998
Q gi|254780694|r 186 LTGREVECLTWISEGK-TSDEIAVIL-----GISRNTVNNYIASIMRK 227 (246)
Q Consensus 186 LT~RE~eVl~lia~G~-t~~eIA~~L-----~iS~~TV~~hl~~i~~K 227 (246)
+++.+.+|+..++.|. +..+|+..+ .++..++..++..+.++
T Consensus 280 l~~~~~~il~~ia~~~~~~~~i~~~~~~~~~~~~~~~~~~~L~~L~~~ 327 (350)
T 2qen_A 280 RSPRYVDILRAIALGYNRWSLIRDYLAVKGTKIPEPRLYALLENLKKM 327 (350)
T ss_dssp HCHHHHHHHHHHHTTCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
T ss_conf 899999999999768997789999998512799999999999999978
No 447
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=20.36 E-value=31 Score=12.55 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 977999999998599979999994
Q gi|254780694|r 187 TGREVECLTWISEGKTSDEIAVIL 210 (246)
Q Consensus 187 T~RE~eVl~lia~G~t~~eIA~~L 210 (246)
+|.+..+-=|-.+|+|+.||-..+
T Consensus 28 sp~~~K~~FL~sKGLt~~EI~~A~ 51 (54)
T 3ff5_A 28 SPLATRRAFLKKKGLTDEEIDLAF 51 (54)
T ss_dssp SCHHHHHHHHHHTTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 878999999998699999999998
No 448
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacteroides thetaiotaomicron vpi-5482}
Probab=20.35 E-value=8.3 Score=16.25 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=0.0
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 97999999499988999999999
Q gi|254780694|r 202 TSDEIAVILGISRNTVNNYIASI 224 (246)
Q Consensus 202 t~~eIA~~L~iS~~TV~~hl~~i 224 (246)
|-+++|..+++|+.||+.=++.+
T Consensus 37 s~~~La~~~~VSr~tVr~Al~~L 59 (126)
T 3ic7_A 37 SVREYASIVEVNANTVMRSYEYL 59 (126)
T ss_dssp CTTTTTTCC-CCSGGGHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 89999999698989999999999
No 449
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=20.33 E-value=31 Score=12.55 Aligned_cols=30 Identities=10% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHCCCCH
Q ss_conf 999999499988999999999998079988
Q gi|254780694|r 204 DEIAVILGISRNTVNNYIASIMRKTATKTR 233 (246)
Q Consensus 204 ~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R 233 (246)
.+||..+++|+..|+.--.|=..|.--.++
T Consensus 34 ~~LA~~~~L~~~qV~~WFqNrR~r~kk~~~ 63 (66)
T 1bw5_A 34 EQLVEMTGLSPRVIRVWFQNKRCKDKKRSI 63 (66)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHCSSCCC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999390999988976888889998877
Done!