HHsearch alignment for GI: 254780695 and conserved domain: COG1766

>COG1766 fliF Flagellar basal body M-ring protein [Cell motility and secretion].
Probab=100.00  E-value=0  Score=861.39  Aligned_cols=534  Identities=29%  Similarity=0.428  Sum_probs=432.5

Q ss_pred             CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEECCCC
Q ss_conf             96789999999986406987889999999999999999999846998245038999899999999999779929991899
Q gi|254780695|r    1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG   80 (563)
Q Consensus         1 m~~~~~l~~~~~~~~~l~~~~ki~~~~~~~~~i~~~~~~~~~~~~p~y~~L~~~l~~~d~~~i~~~L~~~gI~y~~~~~g   80 (563)
T Consensus         3 ~~l~~~~~k~~~~~~~~~~~~ki~l~~~~~~~v~~~v~l~l~~~~p~y~~Ly~~l~~~d~~~Iv~~L~~~~I~y~v~~~G   82 (545)
T COG1766           3 ENLRQLLKKLKEFWGKLTKKQKIVLLGAGAALVAVLVALLLWSRQPKYRTLYSNLSEEDAGRIVQELDQMNIPYKVSSDG   82 (545)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEECCCC
T ss_conf             16899999989998665166789999999999999998723327996364036777777889999998638984637999


Q ss_pred             CEEEECHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECC
Q ss_conf             77995189999999999976998877663256530588842599999999999999999999960576314899998336
Q gi|254780695|r   81 SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD  160 (563)
Q Consensus        81 ~~I~Vp~~~~~~~r~~La~~glp~~~~~~g~el~d~~~~~g~T~~~~~~~~~ralegeL~rtI~~~~~V~~ArV~l~~p~  160 (563)
T Consensus        83 ~~ilVP~~~v~~~Rl~lA~~GLp~~~~-~GyElfd~~~~fG~T~f~~~v~~~RAlegELartI~~l~~V~~ArVhl~lPk  161 (545)
T COG1766          83 GTILVPEDQVYELRLKLAAEGLPKSGN-VGYELFDDNSKFGLTDFMQQVNYQRALEGELARTIVAIDGVKAARVHLVLPK  161 (545)
T ss_pred             CEEECCHHHHHHHHHHHHHCCCCCCCC-CCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHEEEEEECCC
T ss_conf             769676889999999998747987788-6666642444326436777888999987999999997644223058884588


Q ss_pred             CCCCCCCCCCCCEEEEEECCCC--CCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEECCCCC--CCCCHHHHHHHHH
Q ss_conf             6655555558715999706877--89889999999998654018835269982898350036765--3332479999999
Q gi|254780695|r  161 MGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQA  236 (563)
Q Consensus       161 ~~~f~~~~~~~sASV~l~~~~~--l~~~qv~~I~~lVa~sV~gL~~e~VtVvD~~G~~L~~~~~~--~~~~~~~~~~~~~  236 (563)
T Consensus       162 ~s~Fv~~q~~psASV~l~l~pG~~l~~~qV~aI~~LVs~aVpgL~~enVtVvDq~g~ll~~~~~~~~~~~~~~q~~~~~~  241 (545)
T COG1766         162 DSLFVRDQQPPSASVVLKLKPGRNLSREQVRAIVHLVSSAVPGLKPENVTVVDQSGRLLSQSDDDSGSDAALSQLKLKSD  241 (545)
T ss_pred             CCHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             21202136788438999706888789999999999998626999700347855887602445663104789999999999


Q ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCEEEEEEEECCCCC--CCCCEEEEEEECCCCCCCCCCCCCCC-CCCC
Q ss_conf             99999999998877540878069998844322301678885147877--65421577630256677777778777-7778
Q gi|254780695|r  237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK--VERSIRLSKDAQRSETSQPESAVTVE-QNMP  313 (563)
Q Consensus       237 ~E~~~~~kI~~~L~~i~G~~~v~v~V~~~ldfd~~~~~~e~y~p~~~--~~~s~~~~~~~~~s~~~~~~G~pG~~-sN~p  313 (563)
T Consensus       242 vE~~l~~kI~~~L~pv~G~~nv~~~Vta~lDfs~~e~~~e~y~P~~~~~~~rS~q~~~s~~~~~~~~~~g~pg~~~sN~P  321 (545)
T COG1766         242 VEKRLEKKIQNILEPVLGAGNVRASVTAELDFSAKESTEEKYDPNGREPAVRSEQTVTSLSQSGQGTQGGVPGALESNQP  321 (545)
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEECCEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf             99999999998765431787069998642004633001235478876655301121001332268878997760457799


Q ss_pred             CCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             76666667776666554431034210561799997078510010256530543245666555533469899999999864
Q gi|254780695|r  314 HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVS  393 (563)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~t~NYev~~t~~~~~~~~G~I~rlSVAV~Vn~~~~~~~~g~~~~~~~~~eel~~I~~lV~  393 (563)
T Consensus       322 ~~~~~~~~~~~~~-~~~~~e~ttNYEv~~~~~~t~~~~g~i~rlsVaVvVd~~~~-~~~~~~~~~p~s~~~~~~i~~lv~  399 (545)
T COG1766         322 PVAGNQNGKDTSN-YTEKKEETTNYEVDRTISHTKKEPGTIRRLSVAVVVDGKSL-AGTGEKEYTPLSDEELKEIEDLVR  399 (545)
T ss_pred             CCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCC-CCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             8788655444010-01113320002023678876526650356789999816334-566766677777899999999999


Q ss_pred             HHCCCCCCCCCEEEEEECCCCCCCCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             31256611387689985035665434344--4562045899999999999999999999999999997787520112210
Q gi|254780695|r  394 AATGINSRRGDTITITSMDFLENQLFNSG--TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK  471 (563)
Q Consensus       394 ~AiG~d~~RGD~VtV~~~~F~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~lll~~~vl~~l~~~~~~~~~~~  471 (563)
T Consensus       400 ~a~G~d~~RGDsv~V~n~~F~~-~~~~~~~e~~~~~~~~--~~~~~~~~~~~~~~l~~~lv~~~~~r~~i~~~~~~~~e~  476 (545)
T COG1766         400 DAVGYDAKRGDSVTVVNIPFDR-SEDQEAEEGDGKPEWE--TQSFLDSLIPVALYLVVFLVLFIIVRPVIRPRRRRGAEA  476 (545)
T ss_pred             HHCCCCCCCCCEEEEECCCCCC-CCCCCCCCCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf             7348774568746883267763-1233211134314442--034687999999999999999999999999875155200


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf             00112212334333210000012221000133433334444431010021100689999999988699989999999986
Q gi|254780695|r  472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWAR  551 (563)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lv~e~Pe~vA~vLR~WL~  551 (563)
T Consensus       477 ~~~~~~~~~~~~~~~--~~----~------~~~-~~~~~e~~~~~~~~~~~~~e~~~~~l~~ma~~~Pe~vA~vir~Wl~  543 (545)
T COG1766         477 LEAAEEERQGPEEED--VL----P------EEI-RDSNDEQLGLGDEEQRRGKEVLLERLREMAKEDPERVAKVIRQWLN  543 (545)
T ss_pred             HHHHCCCCCCCCCCC--CC----C------CCC-CCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf             001102335632344--56----4------212-3552111154530111235899999999986198999999999862


Q ss_pred             HH
Q ss_conf             37
Q gi|254780695|r  552 SE  553 (563)
Q Consensus       552 ee  553 (563)
T Consensus       544 e~  545 (545)
T COG1766         544 ED  545 (545)
T ss_pred             CC
T ss_conf             69