HHsearch alignment for GI: 254780695 and conserved domain: COG1766
>COG1766 fliF Flagellar basal body M-ring protein [Cell motility and secretion].
Probab=100.00 E-value=0 Score=861.39 Aligned_cols=534 Identities=29% Similarity=0.428 Sum_probs=432.5
Q ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEECCCC
Q ss_conf 96789999999986406987889999999999999999999846998245038999899999999999779929991899
Q gi|254780695|r 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80 (563)
Q Consensus 1 m~~~~~l~~~~~~~~~l~~~~ki~~~~~~~~~i~~~~~~~~~~~~p~y~~L~~~l~~~d~~~i~~~L~~~gI~y~~~~~g 80 (563)
T Consensus 3 ~~l~~~~~k~~~~~~~~~~~~ki~l~~~~~~~v~~~v~l~l~~~~p~y~~Ly~~l~~~d~~~Iv~~L~~~~I~y~v~~~G 82 (545)
T COG1766 3 ENLRQLLKKLKEFWGKLTKKQKIVLLGAGAALVAVLVALLLWSRQPKYRTLYSNLSEEDAGRIVQELDQMNIPYKVSSDG 82 (545)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEECCCC
T ss_conf 16899999989998665166789999999999999998723327996364036777777889999998638984637999
Q ss_pred CEEEECHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECC
Q ss_conf 77995189999999999976998877663256530588842599999999999999999999960576314899998336
Q gi|254780695|r 81 SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 (563)
Q Consensus 81 ~~I~Vp~~~~~~~r~~La~~glp~~~~~~g~el~d~~~~~g~T~~~~~~~~~ralegeL~rtI~~~~~V~~ArV~l~~p~ 160 (563)
T Consensus 83 ~~ilVP~~~v~~~Rl~lA~~GLp~~~~-~GyElfd~~~~fG~T~f~~~v~~~RAlegELartI~~l~~V~~ArVhl~lPk 161 (545)
T COG1766 83 GTILVPEDQVYELRLKLAAEGLPKSGN-VGYELFDDNSKFGLTDFMQQVNYQRALEGELARTIVAIDGVKAARVHLVLPK 161 (545)
T ss_pred CEEECCHHHHHHHHHHHHHCCCCCCCC-CCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHEEEEEECCC
T ss_conf 769676889999999998747987788-6666642444326436777888999987999999997644223058884588
Q ss_pred CCCCCCCCCCCCEEEEEECCCC--CCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEECCCCC--CCCCHHHHHHHHH
Q ss_conf 6655555558715999706877--89889999999998654018835269982898350036765--3332479999999
Q gi|254780695|r 161 MGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQA 236 (563)
Q Consensus 161 ~~~f~~~~~~~sASV~l~~~~~--l~~~qv~~I~~lVa~sV~gL~~e~VtVvD~~G~~L~~~~~~--~~~~~~~~~~~~~ 236 (563)
T Consensus 162 ~s~Fv~~q~~psASV~l~l~pG~~l~~~qV~aI~~LVs~aVpgL~~enVtVvDq~g~ll~~~~~~~~~~~~~~q~~~~~~ 241 (545)
T COG1766 162 DSLFVRDQQPPSASVVLKLKPGRNLSREQVRAIVHLVSSAVPGLKPENVTVVDQSGRLLSQSDDDSGSDAALSQLKLKSD 241 (545)
T ss_pred CCHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 21202136788438999706888789999999999998626999700347855887602445663104789999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCEEEEEEEECCCCC--CCCCEEEEEEECCCCCCCCCCCCCCC-CCCC
Q ss_conf 99999999998877540878069998844322301678885147877--65421577630256677777778777-7778
Q gi|254780695|r 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK--VERSIRLSKDAQRSETSQPESAVTVE-QNMP 313 (563)
Q Consensus 237 ~E~~~~~kI~~~L~~i~G~~~v~v~V~~~ldfd~~~~~~e~y~p~~~--~~~s~~~~~~~~~s~~~~~~G~pG~~-sN~p 313 (563)
T Consensus 242 vE~~l~~kI~~~L~pv~G~~nv~~~Vta~lDfs~~e~~~e~y~P~~~~~~~rS~q~~~s~~~~~~~~~~g~pg~~~sN~P 321 (545)
T COG1766 242 VEKRLEKKIQNILEPVLGAGNVRASVTAELDFSAKESTEEKYDPNGREPAVRSEQTVTSLSQSGQGTQGGVPGALESNQP 321 (545)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEECCEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 99999999998765431787069998642004633001235478876655301121001332268878997760457799
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 76666667776666554431034210561799997078510010256530543245666555533469899999999864
Q gi|254780695|r 314 HVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVS 393 (563)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~t~NYev~~t~~~~~~~~G~I~rlSVAV~Vn~~~~~~~~g~~~~~~~~~eel~~I~~lV~ 393 (563)
T Consensus 322 ~~~~~~~~~~~~~-~~~~~e~ttNYEv~~~~~~t~~~~g~i~rlsVaVvVd~~~~-~~~~~~~~~p~s~~~~~~i~~lv~ 399 (545)
T COG1766 322 PVAGNQNGKDTSN-YTEKKEETTNYEVDRTISHTKKEPGTIRRLSVAVVVDGKSL-AGTGEKEYTPLSDEELKEIEDLVR 399 (545)
T ss_pred CCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCC-CCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 8788655444010-01113320002023678876526650356789999816334-566766677777899999999999
Q ss_pred HHCCCCCCCCCEEEEEECCCCCCCCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 31256611387689985035665434344--4562045899999999999999999999999999997787520112210
Q gi|254780695|r 394 AATGINSRRGDTITITSMDFLENQLFNSG--TVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 (563)
Q Consensus 394 ~AiG~d~~RGD~VtV~~~~F~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~lll~~~vl~~l~~~~~~~~~~~ 471 (563)
T Consensus 400 ~a~G~d~~RGDsv~V~n~~F~~-~~~~~~~e~~~~~~~~--~~~~~~~~~~~~~~l~~~lv~~~~~r~~i~~~~~~~~e~ 476 (545)
T COG1766 400 DAVGYDAKRGDSVTVVNIPFDR-SEDQEAEEGDGKPEWE--TQSFLDSLIPVALYLVVFLVLFIIVRPVIRPRRRRGAEA 476 (545)
T ss_pred HHCCCCCCCCCEEEEECCCCCC-CCCCCCCCCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 7348774568746883267763-1233211134314442--034687999999999999999999999999875155200
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 00112212334333210000012221000133433334444431010021100689999999988699989999999986
Q gi|254780695|r 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWAR 551 (563)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lv~e~Pe~vA~vLR~WL~ 551 (563)
T Consensus 477 ~~~~~~~~~~~~~~~--~~----~------~~~-~~~~~e~~~~~~~~~~~~~e~~~~~l~~ma~~~Pe~vA~vir~Wl~ 543 (545)
T COG1766 477 LEAAEEERQGPEEED--VL----P------EEI-RDSNDEQLGLGDEEQRRGKEVLLERLREMAKEDPERVAKVIRQWLN 543 (545)
T ss_pred HHHHCCCCCCCCCCC--CC----C------CCC-CCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 001102335632344--56----4------212-3552111154530111235899999999986198999999999862
Q ss_pred HH
Q ss_conf 37
Q gi|254780695|r 552 SE 553 (563)
Q Consensus 552 ee 553 (563)
T Consensus 544 e~ 545 (545)
T COG1766 544 ED 545 (545)
T ss_pred CC
T ss_conf 69