HHsearch alignment for GI: 254780695 and conserved domain: PRK05934
>PRK05934 type III secretion system protein; Validated.
Probab=98.46 E-value=5.4e-07 Score=65.62 Aligned_cols=97 Identities=15% Similarity=0.271 Sum_probs=79.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCC--CCCHHHHHHHHHHH
Q ss_conf 8842599999999999999999999960576314899998336665555555871599970687--78988999999999
Q gi|254780695|r 118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVYKSAEAIRHLV 195 (563)
Q Consensus 118 ~~~g~T~~~~~~~~~ralegeL~rtI~~~~~V~~ArV~l~~p~~~~f~~~~~~~sASV~l~~~~--~l~~~qv~~I~~lV 195 (563)
T Consensus 59 sq~gnpkl~E----slaKKEQlE~DLTmF~pva~AtVAlslpted---d~~~~~~iSVILs~~k~etls~sLl~SItDYL 131 (341)
T PRK05934 59 SQLGNPKLIE----SLAKKEQLEKDLTMFHPVASATVALSLPTED---DEDSPAEISVILSLRKAETLSPSLLHSITDYL 131 (341)
T ss_pred HHCCCHHHHH----HHHHHHHHHHHHHHHHHHHHHEEEECCCCCC---CCCCCCEEEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 2127868899----8878998865444320553420333067656---78876226888862500123788999999998
Q ss_pred HHHHHCCCCCCEEEEECCCCEEECCC
Q ss_conf 86540188352699828983500367
Q gi|254780695|r 196 AAAVPNLDMGDVTVLDSTGKLLTANE 221 (563)
Q Consensus 196 a~sV~gL~~e~VtVvD~~G~~L~~~~ 221 (563)
T Consensus 132 ~sSvPGLtkEhItLSDnlGNlYsP~~ 157 (341)
T PRK05934 132 SSSVPGLTKEHITLSDNLGNLYSPLS 157 (341)
T ss_pred HHCCCCCCHHHEECCCCCCCCCCCCH
T ss_conf 62188743321522015677248403