HHsearch alignment for GI: 254780695 and conserved domain: PRK05934

>PRK05934 type III secretion system protein; Validated.
Probab=98.46  E-value=5.4e-07  Score=65.62  Aligned_cols=97  Identities=15%  Similarity=0.271  Sum_probs=79.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCC--CCCHHHHHHHHHHH
Q ss_conf             8842599999999999999999999960576314899998336665555555871599970687--78988999999999
Q gi|254780695|r  118 NSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAIN--PSVYKSAEAIRHLV  195 (563)
Q Consensus       118 ~~~g~T~~~~~~~~~ralegeL~rtI~~~~~V~~ArV~l~~p~~~~f~~~~~~~sASV~l~~~~--~l~~~qv~~I~~lV  195 (563)
T Consensus        59 sq~gnpkl~E----slaKKEQlE~DLTmF~pva~AtVAlslpted---d~~~~~~iSVILs~~k~etls~sLl~SItDYL  131 (341)
T PRK05934         59 SQLGNPKLIE----SLAKKEQLEKDLTMFHPVASATVALSLPTED---DEDSPAEISVILSLRKAETLSPSLLHSITDYL  131 (341)
T ss_pred             HHCCCHHHHH----HHHHHHHHHHHHHHHHHHHHHEEEECCCCCC---CCCCCCEEEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf             2127868899----8878998865444320553420333067656---78876226888862500123788999999998


Q ss_pred             HHHHHCCCCCCEEEEECCCCEEECCC
Q ss_conf             86540188352699828983500367
Q gi|254780695|r  196 AAAVPNLDMGDVTVLDSTGKLLTANE  221 (563)
Q Consensus       196 a~sV~gL~~e~VtVvD~~G~~L~~~~  221 (563)
T Consensus       132 ~sSvPGLtkEhItLSDnlGNlYsP~~  157 (341)
T PRK05934        132 SSSVPGLTKEHITLSDNLGNLYSPLS  157 (341)
T ss_pred             HHCCCCCCHHHEECCCCCCCCCCCCH
T ss_conf             62188743321522015677248403