HHsearch alignment for GI: 254780695 and conserved domain: PRK06007
>PRK06007 fliF flagellar MS-ring protein; Reviewed.
Probab=100.00 E-value=0 Score=948.68 Aligned_cols=532 Identities=28% Similarity=0.417 Sum_probs=443.4
Q ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEECCCC
Q ss_conf 96789999999986406987889999999999999999999846998245038999899999999999779929991899
Q gi|254780695|r 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG 80 (563)
Q Consensus 1 m~~~~~l~~~~~~~~~l~~~~ki~~~~~~~~~i~~~~~~~~~~~~p~y~~L~~~l~~~d~~~i~~~L~~~gI~y~~~~~g 80 (563)
T Consensus 3 ~~l~~~~~~~~~~~~~l~~~qki~l~~~~~~~i~~~~~l~~~~~~p~y~~L~~~l~~~da~~I~~~L~~~gI~Y~l~~~G 82 (540)
T PRK06007 3 MKLKELMEKLLEFLKKLSKLRKIALIGAAAAVIAAIVALVLWASRPDYRVLYSNLSDQDAGQIVAALDQAGIPYKVSSDG 82 (540)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEEECCCC
T ss_conf 68999999999999706988899999999999999999998416997277028999899999999999879975976999
Q ss_pred CEEEECHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECC
Q ss_conf 77995189999999999976998877663256530588842599999999999999999999960576314899998336
Q gi|254780695|r 81 SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD 160 (563)
Q Consensus 81 ~~I~Vp~~~~~~~r~~La~~glp~~~~~~g~el~d~~~~~g~T~~~~~~~~~ralegeL~rtI~~~~~V~~ArV~l~~p~ 160 (563)
T Consensus 83 ~~I~Vp~~~v~~~Rl~LA~~Glp~~~-~~G~elfd~~~~~g~T~f~~~~~~~ralegELartI~~l~~V~~ArVhl~~Pe 161 (540)
T PRK06007 83 GTILVPEDKVDELRLKLASEGLPKGG-SVGYELFDKSSGFGITQFEEQVNYQRALEGELARTIESLDGVKAARVHLALPK 161 (540)
T ss_pred CEEEECHHHHHHHHHHHHHCCCCCCC-CCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf 77997677899999999976999999-97589873689877579999999999999999999971368114699996899
Q ss_pred CCCCCCCCCCCCEEEEEECCCC--CCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEECCCC--CCCCCHHHHHHHHH
Q ss_conf 6655555558715999706877--8988999999999865401883526998289835003676--53332479999999
Q gi|254780695|r 161 MGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSLSIVQA 236 (563)
Q Consensus 161 ~~~f~~~~~~~sASV~l~~~~~--l~~~qv~~I~~lVa~sV~gL~~e~VtVvD~~G~~L~~~~~--~~~~~~~~~~~~~~ 236 (563)
T Consensus 162 ~s~F~~~~~~~tASV~l~l~~g~~Ls~~qV~aI~~LVa~sV~gL~~enVtVvD~~G~lLs~~~~~~~~~~~~~q~~~~~~ 241 (540)
T PRK06007 162 ESVFVREQQPPSASVVLTLKPGRTLDPEQVKAIVHLVASAVPGLKPENVTVVDQNGNLLSDGSDDSSSSLAAKQLKLKQQ 241 (540)
T ss_pred CCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 87552468887568999836998799999999999999746999811369987999852578887654220789999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCEEEEEEEECCCCCCCCCEEEEEEECCC-CCCCCCCCCCCCCCCCCC
Q ss_conf 9999999999887754087806999884432230167888514787765421577630256-677777778777777876
Q gi|254780695|r 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS-ETSQPESAVTVEQNMPHV 315 (563)
Q Consensus 237 ~E~~~~~kI~~~L~~i~G~~~v~v~V~~~ldfd~~~~~~e~y~p~~~~~~s~~~~~~~~~s-~~~~~~G~pG~~sN~p~~ 315 (563)
T Consensus 242 ~E~~l~~~i~~~L~~i~G~g~~~v~V~a~ldf~~~~~~~e~y~P~~~~v~s~~~~~~~~~~~~~~~~~GvpG~~sN~p~~ 321 (540)
T PRK06007 242 VEKRLQQRIESILAPILGPGNVRAQVTADLDFDKVEQTEETYDPNGPVVRSEQTSEEESNGGGGAVTGGVPGALSNQPPN 321 (540)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999999987300898369999888614755899999889996043478887630467787789998865788998
Q ss_pred CCCC-CCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 6666-677766665544310342105617999970785100102565305432456665555334698999999998643
Q gi|254780695|r 316 SDRK-VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSA 394 (563)
Q Consensus 316 ~~~~-~~~~~~~~~~~~~~~t~NYev~~t~~~~~~~~G~I~rlSVAV~Vn~~~~~~~~g~~~~~~~~~eel~~I~~lV~~ 394 (563)
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~t~NYev~~~~~~~~~~~G~i~rlSVaV~vd~~~~~~~~~~~~~~p~s~~el~~I~~lV~~ 401 (540)
T PRK06007 322 QQAQGNGGNNSTSSSSRSEETTNYEVDKTISHTKKQPGTVKRLSVAVVVNKVVIADGDGDVEYQPLSAEELAQIEKLVRS 401 (540)
T ss_pred CCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 65567777778875410110573135708999975895488989999974642357776556787999999999999998
Q ss_pred HCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 12566113876899850356654343444562045899999999999999999999999999997787520112210001
Q gi|254780695|r 395 ATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 (563)
Q Consensus 395 AiG~d~~RGD~VtV~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lll~~~vl~~l~~~~~~~~~~~~~~ 474 (563)
T Consensus 402 AvG~d~~RGD~VtV~~~~F~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~ll~l~l~~~v~Rp~~~~~~~~~~~~~~~ 479 (540)
T PRK06007 402 AVGFDAARGDSVNVVNVPFTRAAEEEEP--ELPLWEQPGFIDLLKLAALWILLVALVLIFKVVRPLLRRAEAEEEEAAEA 479 (540)
T ss_pred HHCCCCCCCCEEEEEEECCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 7276756798699997326775543345--65144427899999999999999999999999988765215566554433
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Q ss_conf 12212334333210000012221000133433334444431010021100689999999988699989999999986378
Q gi|254780695|r 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 (563)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lv~e~Pe~vA~vLR~WL~ee~ 554 (563)
T Consensus 480 ~~~~~---~---~~~----~~~~------~~---~~~~~~~~~~~~~~~~~~~~~~i~~lv~e~Pe~vA~lLR~Wl~ede 540 (540)
T PRK06007 480 EALEE---E---EEA----LLDE------LA---DDEVEELREEEDEHKYEDLLKRLRELAKEDPEEVAQVLRTWLNEDE 540 (540)
T ss_pred CCCCC---C---CCC----CCCC------CC---CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCC
T ss_conf 33344---5---445----5666------55---4322223334333223899999999998799999999999864579