HHsearch alignment for GI: 254780695 and conserved domain: PRK06007

>PRK06007 fliF flagellar MS-ring protein; Reviewed.
Probab=100.00  E-value=0  Score=948.68  Aligned_cols=532  Identities=28%  Similarity=0.417  Sum_probs=443.4

Q ss_pred             CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEECCCC
Q ss_conf             96789999999986406987889999999999999999999846998245038999899999999999779929991899
Q gi|254780695|r    1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG   80 (563)
Q Consensus         1 m~~~~~l~~~~~~~~~l~~~~ki~~~~~~~~~i~~~~~~~~~~~~p~y~~L~~~l~~~d~~~i~~~L~~~gI~y~~~~~g   80 (563)
T Consensus         3 ~~l~~~~~~~~~~~~~l~~~qki~l~~~~~~~i~~~~~l~~~~~~p~y~~L~~~l~~~da~~I~~~L~~~gI~Y~l~~~G   82 (540)
T PRK06007          3 MKLKELMEKLLEFLKKLSKLRKIALIGAAAAVIAAIVALVLWASRPDYRVLYSNLSDQDAGQIVAALDQAGIPYKVSSDG   82 (540)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEEECCCC
T ss_conf             68999999999999706988899999999999999999998416997277028999899999999999879975976999


Q ss_pred             CEEEECHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECC
Q ss_conf             77995189999999999976998877663256530588842599999999999999999999960576314899998336
Q gi|254780695|r   81 SSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPD  160 (563)
Q Consensus        81 ~~I~Vp~~~~~~~r~~La~~glp~~~~~~g~el~d~~~~~g~T~~~~~~~~~ralegeL~rtI~~~~~V~~ArV~l~~p~  160 (563)
T Consensus        83 ~~I~Vp~~~v~~~Rl~LA~~Glp~~~-~~G~elfd~~~~~g~T~f~~~~~~~ralegELartI~~l~~V~~ArVhl~~Pe  161 (540)
T PRK06007         83 GTILVPEDKVDELRLKLASEGLPKGG-SVGYELFDKSSGFGITQFEEQVNYQRALEGELARTIESLDGVKAARVHLALPK  161 (540)
T ss_pred             CEEEECHHHHHHHHHHHHHCCCCCCC-CCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf             77997677899999999976999999-97589873689877579999999999999999999971368114699996899


Q ss_pred             CCCCCCCCCCCCEEEEEECCCC--CCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEECCCC--CCCCCHHHHHHHHH
Q ss_conf             6655555558715999706877--8988999999999865401883526998289835003676--53332479999999
Q gi|254780695|r  161 MGSFRKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEM--ERNILGKSLSIVQA  236 (563)
Q Consensus       161 ~~~f~~~~~~~sASV~l~~~~~--l~~~qv~~I~~lVa~sV~gL~~e~VtVvD~~G~~L~~~~~--~~~~~~~~~~~~~~  236 (563)
T Consensus       162 ~s~F~~~~~~~tASV~l~l~~g~~Ls~~qV~aI~~LVa~sV~gL~~enVtVvD~~G~lLs~~~~~~~~~~~~~q~~~~~~  241 (540)
T PRK06007        162 ESVFVREQQPPSASVVLTLKPGRTLDPEQVKAIVHLVASAVPGLKPENVTVVDQNGNLLSDGSDDSSSSLAAKQLKLKQQ  241 (540)
T ss_pred             CCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             87552468887568999836998799999999999999746999811369987999852578887654220789999999


Q ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCEEEEEEEECCCCCCCCCEEEEEEECCC-CCCCCCCCCCCCCCCCCC
Q ss_conf             9999999999887754087806999884432230167888514787765421577630256-677777778777777876
Q gi|254780695|r  237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRS-ETSQPESAVTVEQNMPHV  315 (563)
Q Consensus       237 ~E~~~~~kI~~~L~~i~G~~~v~v~V~~~ldfd~~~~~~e~y~p~~~~~~s~~~~~~~~~s-~~~~~~G~pG~~sN~p~~  315 (563)
T Consensus       242 ~E~~l~~~i~~~L~~i~G~g~~~v~V~a~ldf~~~~~~~e~y~P~~~~v~s~~~~~~~~~~~~~~~~~GvpG~~sN~p~~  321 (540)
T PRK06007        242 VEKRLQQRIESILAPILGPGNVRAQVTADLDFDKVEQTEETYDPNGPVVRSEQTSEEESNGGGGAVTGGVPGALSNQPPN  321 (540)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99999999999987300898369999888614755899999889996043478887630467787789998865788998


Q ss_pred             CCCC-CCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             6666-677766665544310342105617999970785100102565305432456665555334698999999998643
Q gi|254780695|r  316 SDRK-VPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSA  394 (563)
Q Consensus       316 ~~~~-~~~~~~~~~~~~~~~t~NYev~~t~~~~~~~~G~I~rlSVAV~Vn~~~~~~~~g~~~~~~~~~eel~~I~~lV~~  394 (563)
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~t~NYev~~~~~~~~~~~G~i~rlSVaV~vd~~~~~~~~~~~~~~p~s~~el~~I~~lV~~  401 (540)
T PRK06007        322 QQAQGNGGNNSTSSSSRSEETTNYEVDKTISHTKKQPGTVKRLSVAVVVNKVVIADGDGDVEYQPLSAEELAQIEKLVRS  401 (540)
T ss_pred             CCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             65567777778875410110573135708999975895488989999974642357776556787999999999999998


Q ss_pred             HCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             12566113876899850356654343444562045899999999999999999999999999997787520112210001
Q gi|254780695|r  395 ATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV  474 (563)
Q Consensus       395 AiG~d~~RGD~VtV~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lll~~~vl~~l~~~~~~~~~~~~~~  474 (563)
T Consensus       402 AvG~d~~RGD~VtV~~~~F~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~ll~l~l~~~v~Rp~~~~~~~~~~~~~~~  479 (540)
T PRK06007        402 AVGFDAARGDSVNVVNVPFTRAAEEEEP--ELPLWEQPGFIDLLKLAALWILLVALVLIFKVVRPLLRRAEAEEEEAAEA  479 (540)
T ss_pred             HHCCCCCCCCEEEEEEECCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             7276756798699997326775543345--65144427899999999999999999999999988765215566554433


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Q ss_conf             12212334333210000012221000133433334444431010021100689999999988699989999999986378
Q gi|254780695|r  475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI  554 (563)
Q Consensus       475 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lv~e~Pe~vA~vLR~WL~ee~  554 (563)
T Consensus       480 ~~~~~---~---~~~----~~~~------~~---~~~~~~~~~~~~~~~~~~~~~~i~~lv~e~Pe~vA~lLR~Wl~ede  540 (540)
T PRK06007        480 EALEE---E---EEA----LLDE------LA---DDEVEELREEEDEHKYEDLLKRLRELAKEDPEEVAQVLRTWLNEDE  540 (540)
T ss_pred             CCCCC---C---CCC----CCCC------CC---CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCC
T ss_conf             33344---5---445----5666------55---4322223334333223899999999998799999999999864579