HHsearch alignment for GI: 254780695 and conserved domain: PRK07193
>PRK07193 fliF flagellar MS-ring protein; Reviewed.
Probab=100.00 E-value=0 Score=913.62 Aligned_cols=535 Identities=24% Similarity=0.308 Sum_probs=423.1
Q ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf 67899999999864069878899999999999999999998469982450389998999999999997799299918997
Q gi|254780695|r 2 AILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS 81 (563)
Q Consensus 2 ~~~~~l~~~~~~~~~l~~~~ki~~~~~~~~~i~~~~~~~~~~~~p~y~~L~~~l~~~d~~~i~~~L~~~gI~y~~~~~g~ 81 (563)
T Consensus 8 ~~~~~l~~~w~~~~~-~~~~k~~~i~~~a~~v~~~~~l~~~~~~p~y~~Ly~~L~~~da~~I~~~L~~~~i~y~~~~~g~ 86 (550)
T PRK07193 8 AMLSKLKQKWSPFRL-RGNRKLILLALLALLVAAAIVLSLWRSSQGYRPLYGSQENVPTSQVVEVLEAEGISYRIEPDSG 86 (550)
T ss_pred HHHHHHHHHHHHCCC-CCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEECCCCC
T ss_conf 999999999985042-5672304799999999999999864179970773289998999999999998799879869997
Q ss_pred EEEECHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCC
Q ss_conf 79951899999999999769988776632565305888425999999999999999999999605763148999983366
Q gi|254780695|r 82 SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 (563)
Q Consensus 82 ~I~Vp~~~~~~~r~~La~~glp~~~~~~g~el~d~~~~~g~T~~~~~~~~~ralegeL~rtI~~~~~V~~ArV~l~~p~~ 161 (563)
T Consensus 87 ~I~Vp~~~v~~~Rl~LA~~Glp~~~-~~G~elfd~~~~~g~t~f~q~v~y~rAlegELartI~~l~~V~~ArVhL~~P~~ 165 (550)
T PRK07193 87 QVLVAEDQLGKARMLLAAKGVKAKL-PSGLELLDKDSPLGTSQFMQNVRYRRSLEGELAQSIMALDAVESARVHLAIPKS 165 (550)
T ss_pred EEEECHHHHHHHHHHHHHCCCCCCC-CCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCC
T ss_conf 5993488899999999975799999-973788725888774699999999999999999999714780246999966998
Q ss_pred CCCCC-CCCCCCEEEEEECCCC--CCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEECCCCC----CCCCHHHHHHH
Q ss_conf 65555-5558715999706877--89889999999998654018835269982898350036765----33324799999
Q gi|254780695|r 162 GSFRK-IGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME----RNILGKSLSIV 234 (563)
Q Consensus 162 ~~f~~-~~~~~sASV~l~~~~~--l~~~qv~~I~~lVa~sV~gL~~e~VtVvD~~G~~L~~~~~~----~~~~~~~~~~~ 234 (563)
T Consensus 166 s~F~~~~~~~~sASV~l~l~~g~~L~~~qV~aI~~LVa~sV~gL~penVtVvD~~G~lLs~~~~~~~~~~~~~~~ql~~~ 245 (550)
T PRK07193 166 SSFVRQNPELPSASVMLRLKPGQKLSPEQVEAIVNLVAGSVPGLKPANVSVVDQHGNLLSAGIDANEDGTQSRKSQLEYA 245 (550)
T ss_pred CCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHHEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 76302568888359999806998689999999999998536999877838977899755577877642101038899999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999999988775408780699988443223016788851478776542157763025667777777877777787
Q gi|254780695|r 235 QAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPH 314 (563)
Q Consensus 235 ~~~E~~~~~kI~~~L~~i~G~~~v~v~V~~~ldfd~~~~~~e~y~p~~~~~~s~~~~~~~~~s~~~~~~G~pG~~sN~p~ 314 (563)
T Consensus 246 ~~~E~~l~~~i~~~L~~i~G~~n~~v~V~a~ldf~~~~~t~e~ydp~~~-v~se~~~~e~--~~~~~~~G~pG~~sN~pp 322 (550)
T PRK07193 246 QELEQSTIKNAASMLTPVLGAGNFRVSVAADVDFSRVEETRESYGPAPV-VTNENTSQEN--SNDDMALGIPGSLSNRPP 322 (550)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEEEEECCCCC-EEEEEEEECC--CCCCCCCCCCCCCCCCCC
T ss_conf 9999999999999988534898469999999731535899998689873-0125675303--567788889886678899
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 66666677766665544310342105617999970785100102565305432456665555334698999999998643
Q gi|254780695|r 315 VSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSA 394 (563)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~t~NYev~~t~~~~~~~~G~I~rlSVAV~Vn~~~~~~~~g~~~~~~~~~eel~~I~~lV~~ 394 (563)
T Consensus 323 ~~~~~~~--~~~~~~~~~~~t~NYev~~t~~~~~~~~g~i~rlsVAVvVd~~~~~-------~~~~s~eel~~I~~LV~~ 393 (550)
T PRK07193 323 QAGAGQT--PAAARNLRSEESRQYAYDRSVRHTRYQQGQLEKLSVAVVLNKAAAP-------LKGWTPEQLAQLKRMVED 393 (550)
T ss_pred CCCCCCC--CCCCCCCCCEEEEEEECCEEEEEEECCCCEEEEEEEEEEECCCCCC-------CCCCCHHHHHHHHHHHHH
T ss_conf 8877788--8877753202566433260899998688469998999997576677-------889899999999999999
Q ss_pred HCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 12566113876899850356654343444562045899999999999999999999999999997787520112210001
Q gi|254780695|r 395 ATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEV 474 (563)
Q Consensus 395 AiG~d~~RGD~VtV~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lll~~~vl~~l~~~~~~~~~~~~~~ 474 (563)
T Consensus 394 AvG~d~~RGD~v~V~~~pF~~~~~~~--~~~~~~~~~--~~~~~~~~~~l~~ll~Llli~~vlRplvk~~~~~~~~~~~~ 469 (550)
T PRK07193 394 AIGIDAARGDSLTINSFDFAPPTVAV--EPAMPWWQE--PSTQAWLRYIIGGLLGLLLLFFVLRPLVKHLTRTGSENLPA 469 (550)
T ss_pred HHCCCCCCCCEEEEEECCCCCCCCCC--CCCCCHHCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 73757456874799960467765444--567851106--89999999999999999999999999999973103333333
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Q ss_conf 12212334333210000012221000133433334444431010021100689999999988699989999999986378
Q gi|254780695|r 475 GGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 (563)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lv~e~Pe~vA~vLR~WL~ee~ 554 (563)
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~~~~~~e~~i~~ir~la~e~Pe~VA~vlR~WL~eDe 548 (550)
T PRK07193 470 AISSASALEALEHVDTGVAGADSLPETANALSASSLLGSDDLP-EPGSGLEVKIEHLQLLANKEPERVAEVIKQWINSNE 548 (550)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCC-CCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCC
T ss_conf 4453322123332100233222222221123444554300056-657758999999999997199999999999865217
Q ss_pred H
Q ss_conf 6
Q gi|254780695|r 555 E 555 (563)
Q Consensus 555 ~ 555 (563)
T Consensus 549 ~ 549 (550)
T PRK07193 549 R 549 (550)
T ss_pred C
T ss_conf 7