HHsearch alignment for GI: 254780695 and conserved domain: PRK12800

>PRK12800 fliF flagellar MS-ring protein; Reviewed.
Probab=100.00  E-value=0  Score=948.87  Aligned_cols=540  Identities=22%  Similarity=0.323  Sum_probs=445.4

Q ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEECCCCCEEE
Q ss_conf             99999999864069878899999999999999999998469982450389998999999999997799299918997799
Q gi|254780695|r    5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSIS   84 (563)
Q Consensus         5 ~~l~~~~~~~~~l~~~~ki~~~~~~~~~i~~~~~~~~~~~~p~y~~L~~~l~~~d~~~i~~~L~~~gI~y~~~~~g~~I~   84 (563)
T Consensus        15 ~~~~~~~~~~~~l~~~r~~~l~~~la~~va~~~~~~~w~~~p~y~~Ly~~L~~~D~~~iv~~L~~~~IpY~l~~~g~~Il   94 (572)
T PRK12800         15 EKAGQWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAADLLRTAQIPFKIDQGTGAIS   94 (572)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHCCCCEEECCCCCEEE
T ss_conf             88999999875487344799999999999999999985169983542589997899999999997799779879997599


Q ss_pred             ECHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC
Q ss_conf             51899999999999769988776632565305888425999999999999999999999605763148999983366655
Q gi|254780695|r   85 VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF  164 (563)
Q Consensus        85 Vp~~~~~~~r~~La~~glp~~~~~~g~el~d~~~~~g~T~~~~~~~~~ralegeL~rtI~~~~~V~~ArV~l~~p~~~~f  164 (563)
T Consensus        95 VP~~~v~~~Rl~LA~~Glp~~g~~~GfElld~~~~~G~Sqf~e~v~y~rAlEgELaRTI~~l~~V~~ARVHLalPk~s~F  174 (572)
T PRK12800         95 VPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQFVENARYQHALETELSRTIGTLRPVREARVHLAIPKPSAF  174 (572)
T ss_pred             ECHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCC
T ss_conf             24767899999999768998999876898766888874799999999999999999999843670224899967998764


Q ss_pred             CCCCCCCCEEEEEECCCC--CCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEECCCCC--CCCCHHHHHHHHHHHHH
Q ss_conf             555558715999706877--89889999999998654018835269982898350036765--33324799999999999
Q gi|254780695|r  165 RKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHE  240 (563)
Q Consensus       165 ~~~~~~~sASV~l~~~~~--l~~~qv~~I~~lVa~sV~gL~~e~VtVvD~~G~~L~~~~~~--~~~~~~~~~~~~~~E~~  240 (563)
T Consensus       175 ~r~~~~psASV~l~l~~G~~L~~~QV~aIv~LVAsSVpgL~p~~VtVvDq~G~LLs~~~~~~~~~~~~~q~~~~~~~E~~  254 (572)
T PRK12800        175 TRQRDVASASVVLELRGGQGLERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESS  254 (572)
T ss_pred             CCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCHHHEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             24688997259996579997999999999999984279988423079858998625789875310027899999999999


Q ss_pred             HHHHHHHHHHHHCCCCEEEEEEEEEEECCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC--
Q ss_conf             999999887754087806999884432230167888514787765421577630256677777778777777876666--
Q gi|254780695|r  241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDR--  318 (563)
Q Consensus       241 ~~~kI~~~L~~i~G~~~v~v~V~~~ldfd~~~~~~e~y~p~~~~~~s~~~~~~~~~s~~~~~~G~pG~~sN~p~~~~~--  318 (563)
T Consensus       255 ~~~rI~~~L~pivG~gn~~a~V~adlDF~~~e~t~e~ydp~~~~vrSeq~~e~~~--~~~~~~GvPGa~sN~P~~~~~~~  332 (572)
T PRK12800        255 YNQRIRELLEPMTGPGRVNPEVSVDMDFSVVEEARELYNGEPAKLRSEQVSDTST--SATGPQGPPGATSNSPGQPPAPA  332 (572)
T ss_pred             HHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEECCC--CCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             9999999988662788259999888616753788887479876333047620135--67778899876478899888642


Q ss_pred             ----------CCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             ----------6677766665544310342105617999970785100102565305432456665555334698999999
Q gi|254780695|r  319 ----------KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI  388 (563)
Q Consensus       319 ----------~~~~~~~~~~~~~~~~t~NYev~~t~~~~~~~~G~I~rlSVAV~Vn~~~~~~~~g~~~~~~~~~eel~~I  388 (563)
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~TrNYEv~rti~~~~~~~G~I~RLSVAVvVd~~~~~~~~g~~~~~p~s~eel~~i  412 (572)
T PRK12800        333 AAGAPGTPAAGQAAAAAAPTESSKSATRNYELDRTLQHTRQPAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRI  412 (572)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCEEECEECCEEEEEECCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             24688876556666667776433331031211537999975886488999999972543457777757788899999999


Q ss_pred             HHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             99864312566113876899850356654343444562045899999999999999999999999999997787520112
Q gi|254780695|r  389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD  468 (563)
Q Consensus       389 ~~lV~~AiG~d~~RGD~VtV~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lll~~~vl~~l~~~~~~~~  468 (563)
T Consensus       413 ~~LV~~AvG~d~~RGD~v~V~~~pF~~~~~~~~~~~--~~we~--p~~~~~~r~l~~alv~l~llf~VvRP~lk~l~~~~  488 (572)
T PRK12800        413 EGLVKQAVGFDAARGDTVSVMNAPFVREAVAGEEGP--KWWED--PRVQNGLRLLVGAVVVLALLFGVVRPTLRQLTGVT  488 (572)
T ss_pred             HHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCC--CCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             999997518873569778998547777654334577--54325--89999999999999999999999999999741555


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCC-CCCHHHHHHHHHHHHHHCHHHHHHHHH
Q ss_conf             2100011221233433321000001222100013343333444443101002-110068999999998869998999999
Q gi|254780695|r  469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN-SYVSKQSDLRLLHMIEINEERFAKILR  547 (563)
Q Consensus       469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~lv~e~Pe~vA~vLR  547 (563)
T Consensus       489 ~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~l~~iR~lv~~dP~rVA~ViK  565 (572)
T PRK12800        489 AVKEKQKKGGNDG-TPQ--SADVRMVDDDDDLLPRLGEDTASIGQDKKLAIALPDAYEERMRLAREAVKADSKRVAQVVK  565 (572)
T ss_pred             CCCHHHCCCCCCC-CCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_conf             4210111244545-643--2100025664321001232100126653224667641999999999998749999999999


Q ss_pred             HHHHHH
Q ss_conf             998637
Q gi|254780695|r  548 KWARSE  553 (563)
Q Consensus       548 ~WL~ee  553 (563)
T Consensus       566 ~Wi~~d  571 (572)
T PRK12800        566 GWVASE  571 (572)
T ss_pred             HHHHCC
T ss_conf             998646