HHsearch alignment for GI: 254780695 and conserved domain: PRK12800
>PRK12800 fliF flagellar MS-ring protein; Reviewed.
Probab=100.00 E-value=0 Score=948.87 Aligned_cols=540 Identities=22% Similarity=0.323 Sum_probs=445.4
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEECCCCCEEE
Q ss_conf 99999999864069878899999999999999999998469982450389998999999999997799299918997799
Q gi|254780695|r 5 DQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSSIS 84 (563)
Q Consensus 5 ~~l~~~~~~~~~l~~~~ki~~~~~~~~~i~~~~~~~~~~~~p~y~~L~~~l~~~d~~~i~~~L~~~gI~y~~~~~g~~I~ 84 (563)
T Consensus 15 ~~~~~~~~~~~~l~~~r~~~l~~~la~~va~~~~~~~w~~~p~y~~Ly~~L~~~D~~~iv~~L~~~~IpY~l~~~g~~Il 94 (572)
T PRK12800 15 EKAGQWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAADLLRTAQIPFKIDQGTGAIS 94 (572)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHCCCCEEECCCCCEEE
T ss_conf 88999999875487344799999999999999999985169983542589997899999999997799779879997599
Q ss_pred ECHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC
Q ss_conf 51899999999999769988776632565305888425999999999999999999999605763148999983366655
Q gi|254780695|r 85 VPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 (563)
Q Consensus 85 Vp~~~~~~~r~~La~~glp~~~~~~g~el~d~~~~~g~T~~~~~~~~~ralegeL~rtI~~~~~V~~ArV~l~~p~~~~f 164 (563)
T Consensus 95 VP~~~v~~~Rl~LA~~Glp~~g~~~GfElld~~~~~G~Sqf~e~v~y~rAlEgELaRTI~~l~~V~~ARVHLalPk~s~F 174 (572)
T PRK12800 95 VPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQFVENARYQHALETELSRTIGTLRPVREARVHLAIPKPSAF 174 (572)
T ss_pred ECHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCC
T ss_conf 24767899999999768998999876898766888874799999999999999999999843670224899967998764
Q ss_pred CCCCCCCCEEEEEECCCC--CCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEECCCCC--CCCCHHHHHHHHHHHHH
Q ss_conf 555558715999706877--89889999999998654018835269982898350036765--33324799999999999
Q gi|254780695|r 165 RKIGARPTASVMIRAINP--SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEME--RNILGKSLSIVQAIQHE 240 (563)
Q Consensus 165 ~~~~~~~sASV~l~~~~~--l~~~qv~~I~~lVa~sV~gL~~e~VtVvD~~G~~L~~~~~~--~~~~~~~~~~~~~~E~~ 240 (563)
T Consensus 175 ~r~~~~psASV~l~l~~G~~L~~~QV~aIv~LVAsSVpgL~p~~VtVvDq~G~LLs~~~~~~~~~~~~~q~~~~~~~E~~ 254 (572)
T PRK12800 175 TRQRDVASASVVLELRGGQGLERNQVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESS 254 (572)
T ss_pred CCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCHHHEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 24688997259996579997999999999999984279988423079858998625789875310027899999999999
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEEEEEECCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC--
Q ss_conf 999999887754087806999884432230167888514787765421577630256677777778777777876666--
Q gi|254780695|r 241 IEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDR-- 318 (563)
Q Consensus 241 ~~~kI~~~L~~i~G~~~v~v~V~~~ldfd~~~~~~e~y~p~~~~~~s~~~~~~~~~s~~~~~~G~pG~~sN~p~~~~~-- 318 (563)
T Consensus 255 ~~~rI~~~L~pivG~gn~~a~V~adlDF~~~e~t~e~ydp~~~~vrSeq~~e~~~--~~~~~~GvPGa~sN~P~~~~~~~ 332 (572)
T PRK12800 255 YNQRIRELLEPMTGPGRVNPEVSVDMDFSVVEEARELYNGEPAKLRSEQVSDTST--SATGPQGPPGATSNSPGQPPAPA 332 (572)
T ss_pred HHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEECCC--CCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9999999988662788259999888616753788887479876333047620135--67778899876478899888642
Q ss_pred ----------CCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf ----------6677766665544310342105617999970785100102565305432456665555334698999999
Q gi|254780695|r 319 ----------KVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEI 388 (563)
Q Consensus 319 ----------~~~~~~~~~~~~~~~~t~NYev~~t~~~~~~~~G~I~rlSVAV~Vn~~~~~~~~g~~~~~~~~~eel~~I 388 (563)
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~TrNYEv~rti~~~~~~~G~I~RLSVAVvVd~~~~~~~~g~~~~~p~s~eel~~i 412 (572)
T PRK12800 333 AAGAPGTPAAGQAAAAAAPTESSKSATRNYELDRTLQHTRQPAGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRI 412 (572)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEECEECCEEEEEECCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 24688876556666667776433331031211537999975886488999999972543457777757788899999999
Q ss_pred HHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99864312566113876899850356654343444562045899999999999999999999999999997787520112
Q gi|254780695|r 389 NKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDD 468 (563)
Q Consensus 389 ~~lV~~AiG~d~~RGD~VtV~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lll~~~vl~~l~~~~~~~~ 468 (563)
T Consensus 413 ~~LV~~AvG~d~~RGD~v~V~~~pF~~~~~~~~~~~--~~we~--p~~~~~~r~l~~alv~l~llf~VvRP~lk~l~~~~ 488 (572)
T PRK12800 413 EGLVKQAVGFDAARGDTVSVMNAPFVREAVAGEEGP--KWWED--PRVQNGLRLLVGAVVVLALLFGVVRPTLRQLTGVT 488 (572)
T ss_pred HHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCC--CCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999997518873569778998547777654334577--54325--89999999999999999999999999999741555
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCC-CCCHHHHHHHHHHHHHHCHHHHHHHHH
Q ss_conf 2100011221233433321000001222100013343333444443101002-110068999999998869998999999
Q gi|254780695|r 469 AKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRIN-SYVSKQSDLRLLHMIEINEERFAKILR 547 (563)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~lv~e~Pe~vA~vLR 547 (563)
T Consensus 489 ~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~l~~iR~lv~~dP~rVA~ViK 565 (572)
T PRK12800 489 AVKEKQKKGGNDG-TPQ--SADVRMVDDDDDLLPRLGEDTASIGQDKKLAIALPDAYEERMRLAREAVKADSKRVAQVVK 565 (572)
T ss_pred CCCHHHCCCCCCC-CCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_conf 4210111244545-643--2100025664321001232100126653224667641999999999998749999999999
Q ss_pred HHHHHH
Q ss_conf 998637
Q gi|254780695|r 548 KWARSE 553 (563)
Q Consensus 548 ~WL~ee 553 (563)
T Consensus 566 ~Wi~~d 571 (572)
T PRK12800 566 GWVASE 571 (572)
T ss_pred HHHHCC
T ss_conf 998646