HHsearch alignment for GI: 254780695 and conserved domain: TIGR00206
>TIGR00206 fliF flagellar M-ring protein FliF; InterPro: IPR000067 This family corresponds to the FliF protein. FliF is the major protein of the M-ring in bacterial flagellar basal body . The basal body consists of four rings (L,P,S and M) surrounding the flagellar rod, which is believed to transmit motor rotation to the filament . The M ring is integral to the inner membrane of the cell, and may be connected to the rod via the S (supramembrane) ring, which lies just distal to it. The L and P rings reside in the outer membrane and periplasmic space, respectively. FliF lacks a signal peptide and is predicted to have considerable alpha-helical structure, including an N-terminal sequence that is likely to be membrane-spanning . Overall, however, FliF has a relatively hydrophilic sequence, with a high charge density, especially towards its C-terminus .; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0009431 flagellin-based flagellum basal body MS ring.
Probab=100.00 E-value=0 Score=388.92 Aligned_cols=538 Identities=26% Similarity=0.342 Sum_probs=398.2
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC------CCEEECCCCCHH-HHHHHHHHHHHCCCCEEECCCCC
Q ss_conf 99998640698788999999999999999999984699------824503899989-99999999997799299918997
Q gi|254780695|r 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSP------HYDNLYVKLEVS-DVNRISVALSEANIDFRISDNGS 81 (563)
Q Consensus 9 ~~~~~~~~l~~~~ki~~~~~~~~~i~~~~~~~~~~~~p------~y~~L~~~l~~~-d~~~i~~~L~~~gI~y~~~~~g~ 81 (563)
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 90 (611)
T TIGR00206 11 KALEFFKKLSKLQKIALILAGAAVIALLVFLLLFASKSKDYTQGGYALLFEGLSDEYDGGLILEELDQENVPYKLSEDGG 90 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHCCCCEECCCCC
T ss_conf 67888876431114678999999999999987520343100134202222010124456788887765305510026872
Q ss_pred EEEECHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCC
Q ss_conf 79951899999999999769988776632565305888425999999999999999999999605763148999983366
Q gi|254780695|r 82 SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDM 161 (563)
Q Consensus 82 ~I~Vp~~~~~~~r~~La~~glp~~~~~~g~el~d~~~~~g~T~~~~~~~~~ralegeL~rtI~~~~~V~~ArV~l~~p~~ 161 (563)
T Consensus 91 ~~~~p~~~~~~~~~~~~~~g~p~~~~-~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 169 (611)
T TIGR00206 91 VILVPEDKVDELRLTLAAEGLPKTGS-VGFELFDQDKGFGLTDFEEDINLVRALEGELSRTIEALDPVKGAKVHLALPKD 169 (611)
T ss_pred EEECCHHHHHHHHHHHHHHCCCCCCC-CCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCH
T ss_conf 34132666778888776522554444-54011024356632201345667777777888888751220002034423630
Q ss_pred CCCCCC-CCCCCEEEEEECCCC--CCHHH--HHHHHHHHHHHHHCCCCCCEEEEECCCCEEEC-CCCC----CCCCHHHH
Q ss_conf 655555-558715999706877--89889--99999999865401883526998289835003-6765----33324799
Q gi|254780695|r 162 GSFRKI-GARPTASVMIRAINP--SVYKS--AEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA-NEME----RNILGKSL 231 (563)
Q Consensus 162 ~~f~~~-~~~~sASV~l~~~~~--l~~~q--v~~I~~lVa~sV~gL~~e~VtVvD~~G~~L~~-~~~~----~~~~~~~~ 231 (563)
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~pg~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 249 (611)
T TIGR00206 170 ALFVGEEQEPPSASVVLKLKPGSDLDPGQKKIEGLVHLVSAAVPGLPPDNVALVDENGTLLGEFSDLDGGDGKDLADKQL 249 (611)
T ss_pred HHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHCCCCCCCCCHHHHHHHHH
T ss_conf 22200000233220577415775211025788999999987622676454367506752000000100111134456666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCE-EEEEEEEEEECCCEEEEEEEECCCCC-----------------CCCCEEEEEE
Q ss_conf 99999999999999988775408780-69998844322301678885147877-----------------6542157763
Q gi|254780695|r 232 SIVQAIQHEIEMNINKALAAFLGVDN-FRSAVVAELNMDTQQIREIVYDPDSK-----------------VERSIRLSKD 293 (563)
Q Consensus 232 ~~~~~~E~~~~~kI~~~L~~i~G~~~-v~v~V~~~ldfd~~~~~~e~y~p~~~-----------------~~~s~~~~~~ 293 (563)
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 329 (611)
T TIGR00206 250 KYKSDVEGDLEGEIESLLSPILGGDNFVVARVNAELDFSKEETTEEEYEPNGLENQDPKASYNTRKVSDGVLRSAQLLEE 329 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 66666777888889988776523673378875200012200000122034543344531000024555666665554323
Q ss_pred ECCCCCCCC-CCCCCCCCCCCCCCC--CC-----CCCCCCC---------CCCCCCCEEEEECCCCEEEEEEECCCCCCC
Q ss_conf 025667777-777877777787666--66-----6777666---------655443103421056179999707851001
Q gi|254780695|r 294 AQRSETSQP-ESAVTVEQNMPHVSD--RK-----VPLPRSL---------ENTDKKEEQSNYEINTKSIATTHDNYKLER 356 (563)
Q Consensus 294 ~~~s~~~~~-~G~pG~~sN~p~~~~--~~-----~~~~~~~---------~~~~~~~~t~NYev~~t~~~~~~~~G~I~r 356 (563)
T Consensus 330 ~~~g~g~~~~gg~pg~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 409 (611)
T TIGR00206 330 EYEGDGYPPVGGPPGAGGNQPAPTPNPPVQGLKDNGGNKEPGKYEKNNSGPRSTQLNEKSNYEVGRTIREIKGSLGDLVD 409 (611)
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 32156655467667655556677787655665433443331010003555310000110010001245665301233332
Q ss_pred CEEEEECCCCCC-CCCCCC--CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCC--CCCCCCCCCCCCHHHH
Q ss_conf 025653054324-566655--55334698999999998643125661138768998503566--5434344456204589
Q gi|254780695|r 357 LSIAVVVNKGRL-TEVLGR--SADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE--NQLFNSGTVQVSFMDI 431 (563)
Q Consensus 357 lSVAV~Vn~~~~-~~~~g~--~~~~~~~~eel~~I~~lV~~AiG~d~~RGD~VtV~~~~F~~--~~~~~~~~~~~~~~~~ 431 (563)
T Consensus 410 ~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 489 (611)
T TIGR00206 410 LGWAVVVDGKGDFALPDGKNKLEYLPLSLEELKDIEDLLKEAVGYSPDRGDSLTVRNLSFNPLAPVINNETGGELPPFDG 489 (611)
T ss_pred HHEEEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 00124551543302543200100011004567889999988751121245410001354211110010012221122223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999999999999999999999977875201122100011221233433321000001222100013343333444
Q gi|254780695|r 432 LSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSH 511 (563)
Q Consensus 432 ~~~~~~~~~~~~~~~l~~lll~~~vl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 511 (563)
T Consensus 490 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (611)
T TIGR00206 490 -EKFLDSLTPASKWLLLLLLAFLLGGKLIRPLLERRLELVPELDKQADL------REEEEDEVEGELIKLPDLNKKVEDQ 562 (611)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf -556666677889999999999998889999999999875677777888------7777653033113302466665444
Q ss_pred C-CCCHHHCCCCCHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHHH
Q ss_conf 4-431010021100689999999988699----989999999986378
Q gi|254780695|r 512 S-RNLQSRINSYVSKQSDLRLLHMIEINE----ERFAKILRKWARSEI 554 (563)
Q Consensus 512 ~-~~~~~~~~~~~~~~~~~~i~~lv~e~P----e~vA~vLR~WL~ee~ 554 (563)
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~w~~~~~ 610 (611)
T TIGR00206 563 GGLNEGLEEEEVRYEVSLEELRGLLKEKPDEIAEDFALLLRDWLLEDG 610 (611)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 320033204678999999999875214615689999999999862048