HHsearch alignment for GI: 254780695 and conserved domain: pfam01514
>pfam01514 YscJ_FliF Secretory protein of YscJ/FliF family. This family includes proteins that are related to the YscJ lipoprotein, and the amino terminus of FliF, the flageller M-ring protein. The members of the YscJ family are thought to be involved in secretion of several proteins. The FliF protein ring is thought to be part of the export apparatus for flageller proteins, based on the similarity to YscJ proteins.
Probab=100.00 E-value=0 Score=411.74 Aligned_cols=201 Identities=34% Similarity=0.512 Sum_probs=181.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEECCCC--CEEEECHHHHHHHHH
Q ss_conf 987889999999999999999999846998245038999899999999999779929991899--779951899999999
Q gi|254780695|r 18 GRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNG--SSISVPSSMVGKARI 95 (563)
Q Consensus 18 ~~~~ki~~~~~~~~~i~~~~~~~~~~~~p~y~~L~~~l~~~d~~~i~~~L~~~gI~y~~~~~g--~~I~Vp~~~~~~~r~ 95 (563)
T Consensus 2 ~~~~~i~~-----~~i~~l~~l~~~~~~p~y~~Ly~~L~~~da~~i~~~L~~~gI~y~~~~~g~g~tI~Vp~~~~~~ar~ 76 (206)
T pfam01514 2 KKLRKIAL-----AVVALLLLLLLLAGCPDYVTLYTGLSEKDANEVLAALLQAGIPAEKSPDGDGGTILVPEDDVARARE 76 (206)
T ss_pred CCHHHHHH-----HHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCHHHHHHH
T ss_conf 73001089-----9999999999984799856111599999999999999987997598548987289916014899999
Q ss_pred HHHHCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCEEE
Q ss_conf 99976998877663256530588842599999999999999999999960576314899998336665555555871599
Q gi|254780695|r 96 HLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASV 175 (563)
Q Consensus 96 ~La~~glp~~~~~~g~el~d~~~~~g~T~~~~~~~~~ralegeL~rtI~~~~~V~~ArV~l~~p~~~~f~~~~~~~sASV 175 (563)
T Consensus 77 ~La~~GlP~~~~-~g~~~~f~~~~lg~T~~~~~~~~~rAle~eL~rtI~~i~gV~~ArVhl~lPe~s~f~~~~~~~sASV 155 (206)
T pfam01514 77 LLAAKGLPREGF-VGLEEIFPKDGLGSSPFEERARLIYALEQELSRTLSQIDGVISARVHIVLPERSLFGRESQPPSASV 155 (206)
T ss_pred HHHHCCCCCCCC-CCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCEEE
T ss_conf 999759999999-8899982689876789999999999999999999972788306799996788776555678886689
Q ss_pred EEECCCCCC-HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEECCCCCC
Q ss_conf 970687789-8899999999986540188352699828983500367653
Q gi|254780695|r 176 MIRAINPSV-YKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMER 224 (563)
Q Consensus 176 ~l~~~~~l~-~~qv~~I~~lVa~sV~gL~~e~VtVvD~~G~~L~~~~~~~ 224 (563)
T Consensus 156 ~l~l~~g~~l~~qV~~I~~LVa~SV~gL~~enVtVvD~~G~~Ls~~~d~~ 205 (206)
T pfam01514 156 FIKYSPGVNLDAQVPAIKNLVASSVPGLKYDNVSVVDQPGTLLSASSDQS 205 (206)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCC
T ss_conf 99837999819999999999997459988035599889998778888767