HHsearch alignment for GI: 254780695 and conserved domain: pfam08345
>pfam08345 YscJ_FliF_C Flagellar M-ring protein C-terminal. This domain is found in bacterial flagellar M-ring (FliF) proteins together with the YscJ/FliF domain (pfam01514).
Probab=100.00 E-value=7.7e-38 Score=270.77 Aligned_cols=162 Identities=30% Similarity=0.440 Sum_probs=146.0
Q ss_pred HHHHCCCCEEEEEEEEEEECCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 77540878069998844322301678885147877654215776302566777777787777778766666677766665
Q gi|254780695|r 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLEN 328 (563)
Q Consensus 249 L~~i~G~~~v~v~V~~~ldfd~~~~~~e~y~p~~~~~~s~~~~~~~~~s~~~~~~G~pG~~sN~p~~~~~~~~~~~~~~~ 328 (563)
T Consensus 1 L~~i~G~gn~~v~V~~~ldf~~~e~t~e~ydP~~~~v~Se~~~~e~~~~~~-~~~G~pG~~sN~p~~~~~~-~~~~~~~~ 78 (162)
T pfam08345 1 LEPVVGPGNVRVQVTADLDFDKVEQTEETYDPNGGVVRSEQTSEESSTGSG-AAGGVPGVLSNLPPAPATA-PGGNGSST 78 (162)
T ss_pred CCCEECCCCEEEEEEEEEECCCEEEEEEEECCCCCEEEEEEEEEEECCCCC-CCCCCCCCCCCCCCCCCCC-CCCCCCCC
T ss_conf 974477996799999998526449999998999970400788876125777-8889987626779987767-77888865
Q ss_pred CCCCCEEEEECCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 54431034210561799997078510010256530543245666555533469899999999864312566113876899
Q gi|254780695|r 329 TDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITI 408 (563)
Q Consensus 329 ~~~~~~t~NYev~~t~~~~~~~~G~I~rlSVAV~Vn~~~~~~~~g~~~~~~~~~eel~~I~~lV~~AiG~d~~RGD~VtV 408 (563)
T Consensus 79 ~~~~~~t~NYev~~~~~~~~~~~G~I~rlsvaV~vd~~~~~-~~~~~~~~~~s~ee~~~i~~lV~~AiG~d~~RGD~v~V 157 (162)
T pfam08345 79 SSRSEETRNYEVSRTVRHTVQAPGKIKRLSVAVVVDGVYVV-ADGKAAYVPRSPEELAQIEALVKSAVGFDAARGDSVTV 157 (162)
T ss_pred CCCEEEEEECCCCCEEEEEECCCCEEEEEEEEEEECCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEE
T ss_conf 31101256312574899998189817778999998564236-77853346679999999999999960888778998999
Q ss_pred EECCC
Q ss_conf 85035
Q gi|254780695|r 409 TSMDF 413 (563)
Q Consensus 409 ~~~~F 413 (563)
T Consensus 158 ~~~~F 162 (162)
T pfam08345 158 VSMPF 162 (162)
T ss_pred EECCC
T ss_conf 94689