Query         gi|254780695|ref|YP_003065108.1| flagellar MS-ring protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 563
No_of_seqs    144 out of 1037
Neff          8.2 
Searched_HMMs 13730
Date          Wed Jun  1 08:18:09 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780695.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d2hfva1 d.58.5.5 (A:23-97) Hyp  94.6   0.043 3.1E-06   30.0   6.1   58   48-105     1-70  (75)
  2 d1ic8a2 a.35.1.1 (A:87-180) He  61.7     3.5 0.00026   17.3   3.3   29  524-552    11-39  (94)
  3 d1lxja_ d.58.48.1 (A:) Hypothe  60.4       4 0.00029   16.9   4.3   49   58-106    24-76  (104)
  4 d1zhva2 d.58.18.8 (A:62-127) H  58.4     4.3 0.00032   16.7   4.4   44   59-102    18-63  (66)
  5 d1mwwa_ d.80.1.4 (A:) Hypothet  55.1     4.9 0.00036   16.3  10.5   84  127-210    14-100 (120)
  6 d1yqha1 d.58.48.1 (A:1-101) Hy  51.0     5.7 0.00041   15.9   5.2   57   49-105    12-73  (101)
  7 d1lxna_ d.58.48.1 (A:) Hypothe  50.4     5.8 0.00042   15.8   4.4   50   57-106    19-73  (99)
  8 d1pg4a_ e.23.1.1 (A:) Acetyl-C  43.0     7.5 0.00054   15.1   7.7   13  198-210   287-299 (643)
  9 d3proc2 d.52.1.1 (C:86-163) Al  41.2       8 0.00058   14.9   2.6   73  138-216     5-78  (78)
 10 d1vk8a_ d.58.48.1 (A:) Hypothe  40.9       8 0.00059   14.9   5.0   47   58-104    20-69  (93)
 11 d2h7xa1 c.69.1.22 (A:9-291) Pi  39.5     8.5 0.00062   14.7   2.8   19  534-552   263-281 (283)
 12 d1zd3a2 c.69.1.11 (A:225-547)   38.7     7.9 0.00058   14.9   2.1   22  534-555   300-321 (322)
 13 d1uk8a_ c.69.1.10 (A:) Meta-cl  38.7     8.7 0.00063   14.6   2.4   19  534-552   252-270 (271)
 14 d1s0ya_ d.80.1.1 (A:) Trans-3-  38.5     8.7 0.00064   14.6   4.4   36  175-210     3-41  (62)
 15 d2rhwa1 c.69.1.10 (A:4-286) 2-  38.1     8.9 0.00065   14.6   3.0   19  534-552   264-282 (283)
 16 d1otfa_ d.80.1.1 (A:) 4-oxaloc  37.5     9.1 0.00066   14.5   4.4   36  175-210     3-41  (59)
 17 d1zvpa2 d.58.18.9 (A:68-131) H  30.3      12 0.00086   13.8   3.7   40   60-99     20-61  (64)
 18 d1bn7a_ c.69.1.8 (A:) Haloalka  29.5      12 0.00089   13.7   1.9   19  534-552   271-289 (291)
 19 d1mo2a_ c.69.1.22 (A:) Erythro  28.7     7.7 0.00056   15.0   0.7   18  534-551   237-254 (255)
 20 d1brta_ c.69.1.12 (A:) Bromope  27.7      13 0.00095   13.5   2.8   19  534-552   259-277 (277)
 21 d2aw0a_ d.58.17.1 (A:) Menkes   27.6      13 0.00092   13.6   1.6   43  137-193    19-63  (72)
 22 d1uiza_ d.80.1.3 (A:) Micropha  27.1      13 0.00097   13.4   6.3   76  134-210    18-98  (115)
 23 d1w07a2 a.29.3.2 (A:462-659) A  26.9     5.5  0.0004   16.0  -0.3   54  181-234   114-172 (198)
 24 d1m33a_ c.69.1.26 (A:) Biotin   26.8      14 0.00099   13.4   2.3   19  534-552   235-253 (256)
 25 d1hkha_ c.69.1.12 (A:) Gamma-l  26.5      14   0.001   13.3   2.8   19  534-552   261-279 (279)
 26 d2ddha2 a.29.3.2 (A:475-655) P  25.7     5.9 0.00043   15.8  -0.3   35  181-215   104-138 (181)
 27 d2gdga1 d.80.1.3 (A:1-114) Mic  25.3      14   0.001   13.2   6.3   75  136-210    19-97  (114)
 28 d2hmfa2 d.58.18.10 (A:404-470)  25.0      15  0.0011   13.2   3.1   44   56-99     14-62  (67)
 29 d1b6ga_ c.69.1.8 (A:) Haloalka  24.7      14   0.001   13.2   1.5   19  535-553   292-310 (310)
 30 d2iboa1 d.58.48.1 (A:1-90) Hyp  24.6      15  0.0011   13.1   4.9   45   60-104    22-69  (90)
 31 d2eyqa2 c.37.1.19 (A:349-465)   24.5      15  0.0011   13.1   3.3   43   39-81     26-68  (117)
 32 d1mj5a_ c.69.1.8 (A:) Haloalka  24.4      15  0.0011   13.1   2.3   19  534-552   273-291 (298)
 33 d1p6ta1 d.58.17.1 (A:1-72) Pot  23.2      16  0.0011   12.9   2.2   21  136-156    21-41  (72)
 34 d1cpza_ d.58.17.1 (A:) Copper   21.9      17  0.0012   12.8   1.7   20  137-156    16-35  (68)
 35 d1in0a2 d.58.49.1 (A:90-163) H  21.7      17  0.0012   12.7   4.5   50   49-98      7-56  (74)
 36 d1jmkc_ c.69.1.22 (C:) Surfact  21.4      17  0.0012   12.7   1.3   20  534-553   210-229 (230)
 37 d1r3da_ c.69.1.35 (A:) Hypothe  21.4      17  0.0012   12.7   2.5   20  534-553   243-262 (264)
 38 d1qupa2 d.58.17.1 (A:2-73) Cop  20.7      18  0.0013   12.6   1.6   21  136-156    20-40  (72)
 39 d1ni5a4 d.229.1.1 (A:227-314)   20.7      18  0.0013   12.6   2.4   23  531-553    17-39  (88)
 40 d1osda_ d.58.17.1 (A:) Mercuri  20.1      18  0.0013   12.5   1.7   20  137-156    19-38  (72)

No 1  
>d2hfva1 d.58.5.5 (A:23-97) Hypothetical protein RPA1041 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=94.63  E-value=0.043  Score=29.98  Aligned_cols=58  Identities=19%  Similarity=0.223  Sum_probs=48.7

Q ss_pred             CEEECCCCCHHHHHHHHHHHHHCCCCEEECCCC------------CEEEECHHHHHHHHHHHHHCCCCCC
Q ss_conf             245038999899999999999779929991899------------7799518999999999997699887
Q gi|254780695|r   48 YDNLYVKLEVSDVNRISVALSEANIDFRISDNG------------SSISVPSSMVGKARIHLAAQGLPSS  105 (563)
Q Consensus        48 y~~L~~~l~~~d~~~i~~~L~~~gI~y~~~~~g------------~~I~Vp~~~~~~~r~~La~~glp~~  105 (563)
                      |+.|+.--++--.+.+.+.|+.+||+|-+-+.+            .+|+|+++++.+||-.|+.+|++..
T Consensus         1 M~ELlrTnD~v~is~~~aLL~~agI~~~v~D~~mSilEGsig~iPRRimV~~~d~~~Ar~lL~dag~~~e   70 (75)
T d2hfva1           1 LRELLRTNDAVLLSAVGALLDGADIGHLVLDQNMSILEGSLGVIPRRVLVHEDDLAGARRLLTDAGLAHE   70 (75)
T ss_dssp             EEEEEEECCHHHHHHHHHHHHHTTCCEECCSCCCCSSSCCSSSSCEEEEEEGGGHHHHHHHHHHTTCCSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCHHHCCCCCCEEEEEEECHHHHHHHHHHHHHCCCCHH
T ss_conf             9331234888899999999735799779842874032144354047898757589999999998696210


No 2  
>d1ic8a2 a.35.1.1 (A:87-180) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=61.69  E-value=3.5  Score=17.26  Aligned_cols=29  Identities=10%  Similarity=0.257  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHHCHHHHHHHHHHHHHH
Q ss_conf             06899999999886999899999999863
Q gi|254780695|r  524 SKQSDLRLLHMIEINEERFAKILRKWARS  552 (563)
Q Consensus       524 ~~~~~~~i~~lv~e~Pe~vA~vLR~WL~e  552 (563)
                      ..+...++++|.+++|..|+..||..|..
T Consensus        11 ~~~~~~eVE~llr~d~~~v~~~IK~Fl~~   39 (94)
T d1ic8a2          11 AAHQKAVVETLLQEDPWRVAKMVKSYLQQ   39 (94)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             76777799999965999999999999998


No 3  
>d1lxja_ d.58.48.1 (A:) Hypothetical protein YB1001C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=60.39  E-value=4  Score=16.88  Aligned_cols=49  Identities=16%  Similarity=0.099  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHCCCCEEECCCCCEEEECHHHHHH----HHHHHHHCCCCCCC
Q ss_conf             99999999999779929991899779951899999----99999976998877
Q gi|254780695|r   58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGK----ARIHLAAQGLPSSS  106 (563)
Q Consensus        58 ~d~~~i~~~L~~~gI~y~~~~~g~~I~Vp~~~~~~----~r~~La~~glp~~~  106 (563)
                      .-.++++..|++.|++|++.+-|++|--+-+++..    +.-.+...|.+.-.
T Consensus        24 ~yVa~~i~~i~~sGl~y~~~pmgT~IEG~~del~~~v~~~he~~~~~G~~RV~   76 (104)
T d1lxja_          24 DFVALIEKKIRESPLKSTLHSAGTTIEGPWDDVMGLIGEIHEYGHEKGYVRVH   76 (104)
T ss_dssp             HHHHHHHHHHHTSSSEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             HHHHHHHHHHHHCCCCEEECCCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             99999999999759975865885367778999999999999999976998599


No 4  
>d1zhva2 d.58.18.8 (A:62-127) Hypothetical protein Atu0741 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=58.37  E-value=4.3  Score=16.66  Aligned_cols=44  Identities=25%  Similarity=0.223  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHCCCCEEECC--CCCEEEECHHHHHHHHHHHHHCCC
Q ss_conf             99999999997799299918--997799518999999999997699
Q gi|254780695|r   59 DVNRISVALSEANIDFRISD--NGSSISVPSSMVGKARIHLAAQGL  102 (563)
Q Consensus        59 d~~~i~~~L~~~gI~y~~~~--~g~~I~Vp~~~~~~~r~~La~~gl  102 (563)
                      =.++|.+.|.++||+--.-.  +..-|+||+++..++.-.|...|.
T Consensus        18 i~a~i~~~La~a~Is~~~vSty~~D~ilVp~~~~~~A~~~L~~~g~   63 (66)
T d1zhva2          18 IVLSVISPLSTNGIGIFVVSTFDGDHLLVRSNDLEKTADLLANAGH   63 (66)
T ss_dssp             HHHHHHHHHHTTTCCCEEEECSSCEEEEEEGGGHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHCCCCEEEEEEEECCEEEEEHHHHHHHHHHHHHCCC
T ss_conf             8999999998779986998744163799878789999999998667


No 5  
>d1mwwa_ d.80.1.4 (A:) Hypothetical protein HI1388.1 {Haemophilus influenzae [TaxId: 727]}
Probab=55.13  E-value=4.9  Score=16.31  Aligned_cols=84  Identities=7%  Similarity=0.029  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH---HCCC
Q ss_conf             9999999999999999960576314899998336665555555871599970687789889999999998654---0188
Q gi|254780695|r  127 QEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAV---PNLD  203 (563)
Q Consensus       127 ~~~~~~ralegeL~rtI~~~~~V~~ArV~l~~p~~~~f~~~~~~~sASV~l~~~~~l~~~qv~~I~~lVa~sV---~gL~  203 (563)
                      ++.....++..-|..++..=+.-..-.+|-.-|++-.|..++.+.-+-|-++..++++.+|=+.+...++..+   -|..
T Consensus        14 ~k~~l~~~i~~~l~~~~g~P~~~~~~~~~~~~~~~~~~g~~rs~~~~~I~i~~~~grs~eqK~~l~~~lt~~l~~~lgi~   93 (120)
T d1mwwa_          14 RREKLAEVIYNSLHLGLDIPKGKHAIRFLCLEKEDFYYPFDRSDDYTVIEINLMAGRMEGTKKRLIKMLFSELEYKLGIR   93 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCTTSSCEEEEEECGGGEECCTTSCTTCEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEECCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             99999999999999997849442899999828645773688889879999997579999999999999999999985959


Q ss_pred             CCCEEEE
Q ss_conf             3526998
Q gi|254780695|r  204 MGDVTVL  210 (563)
Q Consensus       204 ~e~VtVv  210 (563)
                      +++|.|.
T Consensus        94 ~~~v~I~  100 (120)
T d1mwwa_          94 AHDVEIT  100 (120)
T ss_dssp             GGGEEEE
T ss_pred             CCEEEEE
T ss_conf             0749999


No 6  
>d1yqha1 d.58.48.1 (A:1-101) Hypothetical protein BC0424 {Bacillus cereus [TaxId: 1396]}
Probab=51.01  E-value=5.7  Score=15.89  Aligned_cols=57  Identities=5%  Similarity=0.052  Sum_probs=41.1

Q ss_pred             EEECCCCC-HHHHHHHHHHHHHCCCCEEECCCCCEEEECHHHHHHH----HHHHHHCCCCCC
Q ss_conf             45038999-8999999999997799299918997799518999999----999997699887
Q gi|254780695|r   49 DNLYVKLE-VSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKA----RIHLAAQGLPSS  105 (563)
Q Consensus        49 ~~L~~~l~-~~d~~~i~~~L~~~gI~y~~~~~g~~I~Vp~~~~~~~----r~~La~~glp~~  105 (563)
                      .|+-.+-+ ..-..+++..|++.|++|++.+-|++|.-+-+++-.+    .-.+...|.+.-
T Consensus        12 ~P~g~~~s~~~~V~~~i~~i~~sGl~y~~~pmgT~IEGe~d~v~~~v~~~~e~~~~~G~~RV   73 (101)
T d1yqha1          12 VPQAKTKDVYSVVDKAIEVVQQSGVRYEVGAMETTLEGELDVLLDVVKRAQQACVDAGAEEV   73 (101)
T ss_dssp             EEECSSSCHHHHHHHHHHHHHHSCSEEEECSSCEEEEECHHHHHHHHHHHHHHHHHTTCSEE
T ss_pred             EECCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCEEECCHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf             84689996799999999999974997486699756667999999999999999997699769


No 7  
>d1lxna_ d.58.48.1 (A:) Hypothetical protein MTH1187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=50.41  E-value=5.8  Score=15.82  Aligned_cols=50  Identities=20%  Similarity=0.167  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHCCCCEEECCCCCEEEEC-HHHHHH----HHHHHHHCCCCCCC
Q ss_conf             899999999999779929991899779951-899999----99999976998877
Q gi|254780695|r   57 VSDVNRISVALSEANIDFRISDNGSSISVP-SSMVGK----ARIHLAAQGLPSSS  106 (563)
Q Consensus        57 ~~d~~~i~~~L~~~gI~y~~~~~g~~I~Vp-~~~~~~----~r~~La~~glp~~~  106 (563)
                      ..-.++++..|++.|++|++.+-|++|--| =+++..    +.-.+...|.+.-.
T Consensus        19 s~yVa~~i~~i~~sGl~y~~~pmgT~IEg~d~dev~~~v~~~he~~~~~G~~RV~   73 (99)
T d1lxna_          19 SSYVAAAVEALKKLNVRYEISGMGTLLEAEDLDELMEAVKAAHEAVLQAGSDRVY   73 (99)
T ss_dssp             HHHHHHHHHHHTTSSCEEEEETTEEEEEESSHHHHHHHHHHHHHHHHHTTCSEEE
T ss_pred             HHHHHHHHHHHHHCCCCEEECCCCCEECCCCHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             9999999999997599757468803533798999999999999999977998699


No 8  
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}
Probab=43.04  E-value=7.5  Score=15.09  Aligned_cols=13  Identities=23%  Similarity=0.156  Sum_probs=7.4

Q ss_pred             HHHCCCCCCEEEE
Q ss_conf             5401883526998
Q gi|254780695|r  198 AVPNLDMGDVTVL  210 (563)
Q Consensus       198 sV~gL~~e~VtVv  210 (563)
                      ..-++.+.++...
T Consensus       287 ~~~~~~~~d~~~~  299 (643)
T d1pg4a_         287 YVFDYHPGDIYWC  299 (643)
T ss_dssp             HHTTCCTTCEEEE
T ss_pred             HHHCCCCCCEEEE
T ss_conf             9619898878999


No 9  
>d3proc2 d.52.1.1 (C:86-163) Alpha-lytic protease prodomain {Lysobacter enzymogenes [TaxId: 69]}
Probab=41.23  E-value=8  Score=14.90  Aligned_cols=73  Identities=19%  Similarity=0.222  Sum_probs=47.8

Q ss_pred             HHHHHHHHCCCCCEEEEE-EEECCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCE
Q ss_conf             999999605763148999-9833666555555587159997068778988999999999865401883526998289835
Q gi|254780695|r  138 EIARTIQSISGIVAARVH-IVMPDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL  216 (563)
Q Consensus       138 eL~rtI~~~~~V~~ArV~-l~~p~~~~f~~~~~~~sASV~l~~~~~l~~~qv~~I~~lVa~sV~gL~~e~VtVvD~~G~~  216 (563)
                      +|..++..||++.+.... ..-|.+.+-.+=-..++=+|++....+-+. +   =..|++.  .|++...|.|+.+.|++
T Consensus         5 ~l~~~~~~Lda~~~~ld~~~~~~p~~V~~WYVDv~tNsVVV~a~~g~~a-a---a~~fi~a--AGvd~~~VRV~~S~~k~   78 (78)
T d3proc2           5 QLQSAMEQLDAGANARVKGVSKPLDGVQSWYVDPRSNAVVVKVDDGATD-A---GVDFVAL--SGADSAQVRIESSPGKL   78 (78)
T ss_dssp             HHHHHHHHHHHHHHC--------CTTEEEEEEEGGGTEEEEEEETTCHH-H---HHHHHHH--HTCCTTTEEEEEESSBC
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEECCCCHH-H---HHHHHHH--HCCCCCCEEEEECCCCC
T ss_conf             8888899999999877766425887860477506888599995688538-8---9999998--58996657987378879


No 10 
>d1vk8a_ d.58.48.1 (A:) Hypothetical protein TM0486 {Thermotoga maritima [TaxId: 2336]}
Probab=40.94  E-value=8  Score=14.87  Aligned_cols=47  Identities=6%  Similarity=0.038  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHCCCCEEECCCCCEEEECHHHHHHHHHH---HHHCCCCC
Q ss_conf             999999999997799299918997799518999999999---99769988
Q gi|254780695|r   58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIH---LAAQGLPS  104 (563)
Q Consensus        58 ~d~~~i~~~L~~~gI~y~~~~~g~~I~Vp~~~~~~~r~~---La~~glp~  104 (563)
                      .-..+++..|++.|++|++.+-|++|.-+-+++-.+--.   +...|-+.
T Consensus        20 ~~V~~~i~~i~~sGl~y~v~pmgT~iEG~~dev~~~v~~~~e~~~~g~~R   69 (93)
T d1vk8a_          20 EVIDRAIEKISSWGMKYEVGPSNTTVEGEFEEIMDRVKELARYLEQFAKR   69 (93)
T ss_dssp             HHHHHHHHHHHTTCSCEEECSSCEEEEECHHHHHHHHHHHHHHHTTTCSE
T ss_pred             HHHHHHHHHHHHCCCCEEECCCCCEEECCHHHHHHHHHHHHHHHHCCCCE
T ss_conf             99999999999749964866885377378999999999999999869987


No 11 
>d2h7xa1 c.69.1.22 (A:9-291) Picromycin polyketide synthase {Streptomyces venezuelae [TaxId: 54571]}
Probab=39.47  E-value=8.5  Score=14.73  Aligned_cols=19  Identities=16%  Similarity=0.351  Sum_probs=16.6

Q ss_pred             HHHHCHHHHHHHHHHHHHH
Q ss_conf             9886999899999999863
Q gi|254780695|r  534 MIEINEERFAKILRKWARS  552 (563)
Q Consensus       534 lv~e~Pe~vA~vLR~WL~e  552 (563)
                      |.+++|+.+|..|+.||..
T Consensus       263 ml~e~~~~vA~~i~~~L~~  281 (283)
T d2h7xa1         263 MMRDHAPAVAEAVLSWLDA  281 (283)
T ss_dssp             HHHTTHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHH
T ss_conf             0338899999999999985


No 12 
>d1zd3a2 c.69.1.11 (A:225-547) Mammalian epoxide hydrolase, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.69  E-value=7.9  Score=14.92  Aligned_cols=22  Identities=23%  Similarity=0.299  Sum_probs=18.2

Q ss_pred             HHHHCHHHHHHHHHHHHHHHHH
Q ss_conf             9886999899999999863786
Q gi|254780695|r  534 MIEINEERFAKILRKWARSEIE  555 (563)
Q Consensus       534 lv~e~Pe~vA~vLR~WL~ee~~  555 (563)
                      +-.|+|++++++|++||..+..
T Consensus       300 ~~~e~p~~v~~~i~~FL~~~~~  321 (322)
T d1zd3a2         300 TQMDKPTEVNQILIKWLDSDAR  321 (322)
T ss_dssp             HHHHSHHHHHHHHHHHHHHHTC
T ss_pred             HHHHCHHHHHHHHHHHHHHCCC
T ss_conf             5896999999999999865378


No 13 
>d1uk8a_ c.69.1.10 (A:) Meta-cleavage product hydrolase CumD {Pseudomonas fluorescens [TaxId: 294]}
Probab=38.66  E-value=8.7  Score=14.64  Aligned_cols=19  Identities=11%  Similarity=0.267  Sum_probs=16.4

Q ss_pred             HHHHCHHHHHHHHHHHHHH
Q ss_conf             9886999899999999863
Q gi|254780695|r  534 MIEINEERFAKILRKWARS  552 (563)
Q Consensus       534 lv~e~Pe~vA~vLR~WL~e  552 (563)
                      +-.++|++++++|+.||++
T Consensus       252 ~~~e~p~~~~~~i~~Fl~e  270 (271)
T d1uk8a_         252 TQIEQTDRFNRLVVEFFNE  270 (271)
T ss_dssp             HHHHTHHHHHHHHHHHHHT
T ss_pred             HHHHCHHHHHHHHHHHHHC
T ss_conf             5897999999999999952


No 14 
>d1s0ya_ d.80.1.1 (A:) Trans-3-chloroacrylic acid dehalogenase alpha-subunit, CaaD1 {Pseudomonas pavonaceae [TaxId: 47881]}
Probab=38.52  E-value=8.7  Score=14.63  Aligned_cols=36  Identities=3%  Similarity=-0.043  Sum_probs=19.5

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHH---HCCCCCCEEEE
Q ss_conf             9970687789889999999998654---01883526998
Q gi|254780695|r  175 VMIRAINPSVYKSAEAIRHLVAAAV---PNLDMGDVTVL  210 (563)
Q Consensus       175 V~l~~~~~l~~~qv~~I~~lVa~sV---~gL~~e~VtVv  210 (563)
                      |.+++.+|+|.+|-+.+...+..++   -|..+++|.|+
T Consensus         3 I~v~~~~Grt~eqK~~l~~~it~~~~~~~g~~~e~v~V~   41 (62)
T d1s0ya_           3 ISCDMRYGRTDEQKRALSAGLLRVISEATGEPRENIFFV   41 (62)
T ss_dssp             EEEEEETTCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEE
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf             999980899999999999999999999829490529999


No 15 
>d2rhwa1 c.69.1.10 (A:4-286) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Burkholderia xenovorans [TaxId: 36873]}
Probab=38.13  E-value=8.9  Score=14.59  Aligned_cols=19  Identities=11%  Similarity=0.242  Sum_probs=16.4

Q ss_pred             HHHHCHHHHHHHHHHHHHH
Q ss_conf             9886999899999999863
Q gi|254780695|r  534 MIEINEERFAKILRKWARS  552 (563)
Q Consensus       534 lv~e~Pe~vA~vLR~WL~e  552 (563)
                      +-.++|+++++.|+.||++
T Consensus       264 ~~~e~p~~~~~~i~~FLk~  282 (283)
T d2rhwa1         264 AQWEHADEFNRLVIDFLRH  282 (283)
T ss_dssp             HHHHTHHHHHHHHHHHHHH
T ss_pred             HHHHCHHHHHHHHHHHHHC
T ss_conf             4896999999999999857


No 16 
>d1otfa_ d.80.1.1 (A:) 4-oxalocrotonate tautomerase {Pseudomonas sp., DmpI [TaxId: 306]}
Probab=37.54  E-value=9.1  Score=14.53  Aligned_cols=36  Identities=19%  Similarity=0.191  Sum_probs=21.3

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHH---HHCCCCCCEEEE
Q ss_conf             997068778988999999999865---401883526998
Q gi|254780695|r  175 VMIRAINPSVYKSAEAIRHLVAAA---VPNLDMGDVTVL  210 (563)
Q Consensus       175 V~l~~~~~l~~~qv~~I~~lVa~s---V~gL~~e~VtVv  210 (563)
                      |.+++.+|+|.+|-+.+..-+..+   +-|..+++|.|+
T Consensus         3 I~i~~~~Grs~eqK~~l~~~it~~~~~~~g~~~~~v~V~   41 (59)
T d1otfa_           3 AQLYIIEGRTDEQKETLIRQVSEAMANSLDAPLERVRVL   41 (59)
T ss_dssp             EEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCGGGCEEE
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf             999981899999999999999999999849590429999


No 17 
>d1zvpa2 d.58.18.9 (A:68-131) Hypothetical protein VC0802 {Vibrio cholerae [TaxId: 666]}
Probab=30.32  E-value=12  Score=13.77  Aligned_cols=40  Identities=18%  Similarity=0.135  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHCCCCEEECC--CCCEEEECHHHHHHHHHHHHH
Q ss_conf             9999999997799299918--997799518999999999997
Q gi|254780695|r   60 VNRISVALSEANIDFRISD--NGSSISVPSSMVGKARIHLAA   99 (563)
Q Consensus        60 ~~~i~~~L~~~gI~y~~~~--~g~~I~Vp~~~~~~~r~~La~   99 (563)
                      .+.|...|.++||+--.-.  +..-|+||+++..+|--.|..
T Consensus        20 ~A~is~~La~~~Is~nvis~~~hDhifVp~~~~~~Al~~L~~   61 (64)
T d1zvpa2          20 TAAFATKLAEHGISANVIAGYYHDHIFVQKEKAQQALQALGE   61 (64)
T ss_dssp             HHHHHHHHHHTTCCCEEEECSSCEEEEEEGGGHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCCEEEEEEECCCEEEECHHHHHHHHHHHHH
T ss_conf             999999999779973787721153698735569999999999


No 18 
>d1bn7a_ c.69.1.8 (A:) Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1831]}
Probab=29.49  E-value=12  Score=13.68  Aligned_cols=19  Identities=16%  Similarity=0.366  Sum_probs=16.1

Q ss_pred             HHHHCHHHHHHHHHHHHHH
Q ss_conf             9886999899999999863
Q gi|254780695|r  534 MIEINEERFAKILRKWARS  552 (563)
Q Consensus       534 lv~e~Pe~vA~vLR~WL~e  552 (563)
                      +-.++|+++++.|+.||+.
T Consensus       271 ~~~e~p~~v~~~i~~fL~~  289 (291)
T d1bn7a_         271 LQEDNPDLIGSEIARWLPG  289 (291)
T ss_dssp             GGGTCHHHHHHHHHHHSGG
T ss_pred             HHHHCHHHHHHHHHHHHHH
T ss_conf             1785999999999999996


No 19 
>d1mo2a_ c.69.1.22 (A:) Erythromycin polyketide synthase {Saccharopolyspora erythraea [TaxId: 1836]}
Probab=28.71  E-value=7.7  Score=14.98  Aligned_cols=18  Identities=17%  Similarity=0.514  Sum_probs=15.8

Q ss_pred             HHHHCHHHHHHHHHHHHH
Q ss_conf             988699989999999986
Q gi|254780695|r  534 MIEINEERFAKILRKWAR  551 (563)
Q Consensus       534 lv~e~Pe~vA~vLR~WL~  551 (563)
                      |.+++|+.+|.+|+.||.
T Consensus       237 ml~~~~~~~A~~i~~~L~  254 (255)
T d1mo2a_         237 MVQEHADAIARHIDAWLG  254 (255)
T ss_dssp             CSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHC
T ss_conf             030369999999999868


No 20 
>d1brta_ c.69.1.12 (A:) Bromoperoxidase A2 {Streptomyces aureofaciens [TaxId: 1894]}
Probab=27.66  E-value=13  Score=13.47  Aligned_cols=19  Identities=11%  Similarity=0.148  Sum_probs=16.1

Q ss_pred             HHHHCHHHHHHHHHHHHHH
Q ss_conf             9886999899999999863
Q gi|254780695|r  534 MIEINEERFAKILRKWARS  552 (563)
Q Consensus       534 lv~e~Pe~vA~vLR~WL~e  552 (563)
                      +..++|+++++.|+.||++
T Consensus       259 ~~~e~p~~~~~~i~~fL~k  277 (277)
T d1brta_         259 LLWTHAEEVNTALLAFLAK  277 (277)
T ss_dssp             HHHHTHHHHHHHHHHHHHC
T ss_pred             HHHHCHHHHHHHHHHHHCC
T ss_conf             3886999999999999782


No 21 
>d2aw0a_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.59  E-value=13  Score=13.58  Aligned_cols=43  Identities=16%  Similarity=0.175  Sum_probs=25.9

Q ss_pred             HHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCCC-CCHHHH-HHHHH
Q ss_conf             9999999605763148999983366655555558715999706877-898899-99999
Q gi|254780695|r  137 GEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAINP-SVYKSA-EAIRH  193 (563)
Q Consensus       137 geL~rtI~~~~~V~~ArV~l~~p~~~~f~~~~~~~sASV~l~~~~~-l~~~qv-~~I~~  193 (563)
                      .-+++.|..++||++++|++              ++-.|.++..++ .+.+++ +.|..
T Consensus        19 ~~Ie~~l~~~~GV~~v~v~~--------------~~~~v~v~~d~~~~~~~~i~~~i~~   63 (72)
T d2aw0a_          19 QSIEGVISKKPGVKSIRVSL--------------ANSNGTVEYDPLLTSPETLRGAIED   63 (72)
T ss_dssp             HHHHHHHHTSTTCCCEEEET--------------TTTEEEEEECTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCEEEEEEC--------------CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf             99999872689967999988--------------8999999989999999999999995


No 22 
>d1uiza_ d.80.1.3 (A:) Microphage migration inhibition factor (MIF) {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=27.12  E-value=13  Score=13.41  Aligned_cols=76  Identities=14%  Similarity=0.167  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHCCCCCEEEEEEEE-CCCCCCCCCCCCCCEEEEEECCCCCCHHH----HHHHHHHHHHHHHCCCCCCEE
Q ss_conf             9999999999605763148999983-36665555555871599970687789889----999999998654018835269
Q gi|254780695|r  134 ALEGEIARTIQSISGIVAARVHIVM-PDMGSFRKIGARPTASVMIRAINPSVYKS----AEAIRHLVAAAVPNLDMGDVT  208 (563)
Q Consensus       134 alegeL~rtI~~~~~V~~ArV~l~~-p~~~~f~~~~~~~sASV~l~~~~~l~~~q----v~~I~~lVa~sV~gL~~e~Vt  208 (563)
                      ++..+|.+.|..+-|--...|...+ +....+......|.|-|-|+.-+++++++    ...|..++..-. |+.+++|-
T Consensus        18 ~~~~~ls~~ia~~lgKpe~~vmv~v~~~~~m~fggs~~P~a~~~v~siG~l~~~~n~~~s~~i~~~l~~~L-gI~~~Riy   96 (115)
T d1uiza_          18 TLLSDLTKQLAKATGKPAEYIAIHIVPDQIMSFGDSTDPCAVCSLCSIGKIGGPQNKSYTKLLCDILTKQL-NIPANRVY   96 (115)
T ss_dssp             THHHHHHHHHHHHHTCCGGGCEEEEECSCEEEETTBCSSCEEEEEEESSCCSHHHHHHHHHHHHHHHHHHH-CCCGGGEE
T ss_pred             HHHHHHHHHHHHHHCCCHHHEEEEECCCCEEEECCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHC-CCCCCEEE
T ss_conf             99999999999987999799999983896079679899689999999768881355999999999999874-99956499


Q ss_pred             EE
Q ss_conf             98
Q gi|254780695|r  209 VL  210 (563)
Q Consensus       209 Vv  210 (563)
                      |.
T Consensus        97 i~   98 (115)
T d1uiza_          97 IN   98 (115)
T ss_dssp             EE
T ss_pred             EE
T ss_conf             99


No 23 
>d1w07a2 a.29.3.2 (A:462-659) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=26.85  E-value=5.5  Score=15.99  Aligned_cols=54  Identities=15%  Similarity=0.132  Sum_probs=38.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCE---EEC--CCCCCCCCHHHHHHH
Q ss_conf             778988999999999865401883526998289835---003--676533324799999
Q gi|254780695|r  181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKL---LTA--NEMERNILGKSLSIV  234 (563)
Q Consensus       181 ~~l~~~qv~~I~~lVa~sV~gL~~e~VtVvD~~G~~---L~~--~~~~~~~~~~~~~~~  234 (563)
                      +-++++|+..|...+-.-...|.|+-|.+||..|-.   |++  +..++.......+..
T Consensus       114 ~~ls~~q~~~l~~~i~~L~~~Lrp~Av~LVDAF~~pD~~L~SaLG~~DG~vYe~l~~~a  172 (198)
T d1w07a2         114 NCITPKQASLANDQLRSLYTQVRPNAVALVDAFNYTDHYLNSVLGRYDGNVYPKLFEEA  172 (198)
T ss_dssp             TSSCHHHHHHHHHHHHHHHHHHGGGHHHHHHTTCCCHHHHTCSTTCTTCCCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHCCCCHHHHHHHHHH
T ss_conf             98789999999999999999998889888653599878766374067878999999999


No 24 
>d1m33a_ c.69.1.26 (A:) Biotin biosynthesis protein BioH {Escherichia coli [TaxId: 562]}
Probab=26.78  E-value=14  Score=13.37  Aligned_cols=19  Identities=11%  Similarity=0.141  Sum_probs=16.1

Q ss_pred             HHHHCHHHHHHHHHHHHHH
Q ss_conf             9886999899999999863
Q gi|254780695|r  534 MIEINEERFAKILRKWARS  552 (563)
Q Consensus       534 lv~e~Pe~vA~vLR~WL~e  552 (563)
                      +--|+|++++++|+.||++
T Consensus       235 ~~~e~p~~~~~~l~~fl~~  253 (256)
T d1m33a_         235 PFISHPAEFCHLLVALKQR  253 (256)
T ss_dssp             HHHHSHHHHHHHHHHHHTT
T ss_pred             HHHHCHHHHHHHHHHHHHH
T ss_conf             3897999999999999997


No 25 
>d1hkha_ c.69.1.12 (A:) Gamma-lactamase {Aureobacterium sp. [TaxId: 51671]}
Probab=26.51  E-value=14  Score=13.34  Aligned_cols=19  Identities=5%  Similarity=0.218  Sum_probs=16.2

Q ss_pred             HHHHCHHHHHHHHHHHHHH
Q ss_conf             9886999899999999863
Q gi|254780695|r  534 MIEINEERFAKILRKWARS  552 (563)
Q Consensus       534 lv~e~Pe~vA~vLR~WL~e  552 (563)
                      +..++|+++++.|+.||++
T Consensus       261 ~~~e~p~~v~~~i~~fl~k  279 (279)
T d1hkha_         261 LLWTHADEVNAALKTFLAK  279 (279)
T ss_dssp             HHHHTHHHHHHHHHHHHHC
T ss_pred             HHHHCHHHHHHHHHHHHCC
T ss_conf             4886999999999999784


No 26 
>d2ddha2 a.29.3.2 (A:475-655) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=25.70  E-value=5.9  Score=15.77  Aligned_cols=35  Identities=6%  Similarity=-0.004  Sum_probs=31.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf             77898899999999986540188352699828983
Q gi|254780695|r  181 NPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGK  215 (563)
Q Consensus       181 ~~l~~~qv~~I~~lVa~sV~gL~~e~VtVvD~~G~  215 (563)
                      +-++++|+..|...+-.-...|.|+-|.+||..|-
T Consensus       104 g~ls~~q~~~i~~~i~~L~~~lrp~Av~LVDaF~~  138 (181)
T d2ddha2         104 SIITGAQLSQVNARILELLTLIRPNAVALVDAFDF  138 (181)
T ss_dssp             TSSCHHHHHHHHHHHHHHHHHHGGGHHHHHHTTCC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             99899999999999999999999999988670379


No 27 
>d2gdga1 d.80.1.3 (A:1-114) Microphage migration inhibition factor (MIF) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.30  E-value=14  Score=13.19  Aligned_cols=75  Identities=13%  Similarity=0.124  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHCCCCCEEEEEEEE-CCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHH---CCCCCCEEEE
Q ss_conf             99999999605763148999983-366655555558715999706877898899999999986540---1883526998
Q gi|254780695|r  136 EGEIARTIQSISGIVAARVHIVM-PDMGSFRKIGARPTASVMIRAINPSVYKSAEAIRHLVAAAVP---NLDMGDVTVL  210 (563)
Q Consensus       136 egeL~rtI~~~~~V~~ArV~l~~-p~~~~f~~~~~~~sASV~l~~~~~l~~~qv~~I~~lVa~sV~---gL~~e~VtVv  210 (563)
                      ..+|.+.|..+-|=-...|...+ |....+......|.|-|-|+.-+++++++-+.+...+...+.   |+.+++|-|.
T Consensus        19 ~~~~s~~ia~~lgKpe~~vmV~v~~~~~m~fgGs~~P~a~~~l~siG~~~~~~n~~~s~~i~~~l~~~LgI~~~RiyI~   97 (114)
T d2gdga1          19 LSELTQQLAQATGKPAQYIAVHVVPDQLMTFSGTNDPCALCSLHSIGKIGGAQNRNYSKLLCGLLSDRLHISPDRVYIN   97 (114)
T ss_dssp             HHHHHHHHHHHHCCCGGGCEEEEECSCEEEETTBCSSCEEEEEEESSCCSHHHHHHHHHHHHHHHHHHHCCCGGGEEEE
T ss_pred             HHHHHHHHHHHHCCCHHHEEEEEECCCCEEECCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             9999999998879997998999967987277688997799999980689978889999999999999839795659999


No 28 
>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}
Probab=25.02  E-value=15  Score=13.16  Aligned_cols=44  Identities=18%  Similarity=0.197  Sum_probs=33.4

Q ss_pred             CHHHHHHHHHHHHHCCCCEEECCCCC-----EEEECHHHHHHHHHHHHH
Q ss_conf             98999999999997799299918997-----799518999999999997
Q gi|254780695|r   56 EVSDVNRISVALSEANIDFRISDNGS-----SISVPSSMVGKARIHLAA   99 (563)
Q Consensus        56 ~~~d~~~i~~~L~~~gI~y~~~~~g~-----~I~Vp~~~~~~~r~~La~   99 (563)
                      .+.=++.+.+.|.++||.-++-..|.     ++.|+++|.+++.-.|-.
T Consensus        14 ~~gi~arif~~L~~~~InV~mIsq~~Se~~Is~~V~~~d~~~Av~~Lh~   62 (67)
T d2hmfa2          14 AKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDLLNCVRKLHE   62 (67)
T ss_dssp             CTTHHHHHHHHHHHTTCCCCEEEESSCSSEEEEEEEGGGHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHCCCCHHHEEECCCCCEEEEEEEHHHHHHHHHHHHH
T ss_conf             8239999999999869986774534860249999808999999999999


No 29 
>d1b6ga_ c.69.1.8 (A:) Haloalkane dehalogenase {Xanthobacter autotrophicus [TaxId: 280]}
Probab=24.70  E-value=14  Score=13.23  Aligned_cols=19  Identities=26%  Similarity=0.399  Sum_probs=15.9

Q ss_pred             HHHCHHHHHHHHHHHHHHH
Q ss_conf             8869998999999998637
Q gi|254780695|r  535 IEINEERFAKILRKWARSE  553 (563)
Q Consensus       535 v~e~Pe~vA~vLR~WL~ee  553 (563)
                      -.++|+.++++|+.||..|
T Consensus       292 ~~e~pe~v~~~i~~Fl~~~  310 (310)
T d1b6ga_         292 QEFGEQVAREALKHFAETE  310 (310)
T ss_dssp             GGGHHHHHHHHHHHHHHTC
T ss_pred             HHHCHHHHHHHHHHHHHCC
T ss_conf             1408999999999998079


No 30 
>d2iboa1 d.58.48.1 (A:1-90) Hypothetical protein SP2199 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=24.64  E-value=15  Score=13.11  Aligned_cols=45  Identities=7%  Similarity=0.082  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHCCCCEEECCCCCEEEECHHHHHHHHH---HHHHCCCCC
Q ss_conf             999999999779929991899779951899999999---999769988
Q gi|254780695|r   60 VNRISVALSEANIDFRISDNGSSISVPSSMVGKARI---HLAAQGLPS  104 (563)
Q Consensus        60 ~~~i~~~L~~~gI~y~~~~~g~~I~Vp~~~~~~~r~---~La~~glp~  104 (563)
                      ..+++..|++.|++|++.+-|++|.=+-+++-.+--   ....+|.+.
T Consensus        22 V~~~I~~i~~sgl~~~~~pm~T~ieGe~~~vm~~i~~~~e~~~~g~~r   69 (90)
T d2iboa1          22 IDQVIAYLQTQEVTMVVTPFETVLEGEFDELMRILKEALEVAGQEADN   69 (90)
T ss_dssp             HHHHHHHHHHSSSEEEECSSCEEEEEEHHHHHHHHHHHHHHHHTSCSC
T ss_pred             HHHHHHHHHHCCCCEEECCCCCEEECCHHHHHHHHHHHHHHHHCCCCE
T ss_conf             999999999749968976886478879999999999999999758986


No 31 
>d2eyqa2 c.37.1.19 (A:349-465) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=24.48  E-value=15  Score=13.09  Aligned_cols=43  Identities=9%  Similarity=-0.033  Sum_probs=33.7

Q ss_pred             HHHHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf             9998469982450389998999999999997799299918997
Q gi|254780695|r   39 ARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGS   81 (563)
Q Consensus        39 ~~~~~~~p~y~~L~~~l~~~d~~~i~~~L~~~gI~y~~~~~g~   81 (563)
                      +--|.....|.+|+.+-+..-+..+.+.|.+.||++...++..
T Consensus        26 L~~~i~~~~~~Vli~a~s~g~~erl~e~L~~~~i~~~~~~~~~   68 (117)
T d2eyqa2          26 LRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLD   68 (117)
T ss_dssp             HHHHHTTCCSCCCEEESSHHHHHHHHHHHGGGTCCCEECSSGG
T ss_pred             HHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEECCHH
T ss_conf             9999995898399997996579999999997699825706755


No 32 
>d1mj5a_ c.69.1.8 (A:) Haloalkane dehalogenase {Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]}
Probab=24.42  E-value=15  Score=13.09  Aligned_cols=19  Identities=11%  Similarity=0.251  Sum_probs=16.3

Q ss_pred             HHHHCHHHHHHHHHHHHHH
Q ss_conf             9886999899999999863
Q gi|254780695|r  534 MIEINEERFAKILRKWARS  552 (563)
Q Consensus       534 lv~e~Pe~vA~vLR~WL~e  552 (563)
                      +..|+|+++++.|+.||+.
T Consensus       273 ~~~e~P~~v~~~i~~fl~~  291 (298)
T d1mj5a_         273 IQEDSPDEIGAAIAAFVRR  291 (298)
T ss_dssp             GGGTCHHHHHHHHHHHHHH
T ss_pred             HHHHCHHHHHHHHHHHHHH
T ss_conf             1896999999999999961


No 33 
>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]}
Probab=23.16  E-value=16  Score=12.93  Aligned_cols=21  Identities=19%  Similarity=0.525  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHCCCCCEEEEEE
Q ss_conf             999999996057631489999
Q gi|254780695|r  136 EGEIARTIQSISGIVAARVHI  156 (563)
Q Consensus       136 egeL~rtI~~~~~V~~ArV~l  156 (563)
                      ..-+++.++.++||.+++|++
T Consensus        21 ~~~Ie~~l~~~~gV~~v~v~~   41 (72)
T d1p6ta1          21 AARIEKGLKRMPGVTDANVNL   41 (72)
T ss_dssp             HHHHHHHHTTSSSEEEEEEEG
T ss_pred             HHHHHHHHHCCCCCEEEEEEC
T ss_conf             999999997499957999986


No 34 
>d1cpza_ d.58.17.1 (A:) Copper chaperone {Enterococcus hirae [TaxId: 1354]}
Probab=21.86  E-value=17  Score=12.76  Aligned_cols=20  Identities=25%  Similarity=0.531  Sum_probs=15.0

Q ss_pred             HHHHHHHHHCCCCCEEEEEE
Q ss_conf             99999996057631489999
Q gi|254780695|r  137 GEIARTIQSISGIVAARVHI  156 (563)
Q Consensus       137 geL~rtI~~~~~V~~ArV~l  156 (563)
                      .-+++.|..++||++++|.+
T Consensus        16 ~~Ie~~l~~~~GV~~v~V~~   35 (68)
T d1cpza_          16 ARIEEAVGRISGVKKVKVQL   35 (68)
T ss_dssp             HHHHHHHHTSTTEEEEEEET
T ss_pred             HHHHHHHHCCCCCEEEEEEC
T ss_conf             99999975699937999987


No 35 
>d1in0a2 d.58.49.1 (A:90-163) Hypothetical protein HI1034 {Haemophilus influenzae [TaxId: 727]}
Probab=21.65  E-value=17  Score=12.73  Aligned_cols=50  Identities=12%  Similarity=0.178  Sum_probs=40.4

Q ss_pred             EEECCCCCHHHHHHHHHHHHHCCCCEEECCCCCEEEECHHHHHHHHHHHH
Q ss_conf             45038999899999999999779929991899779951899999999999
Q gi|254780695|r   49 DNLYVKLEVSDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLA   98 (563)
Q Consensus        49 ~~L~~~l~~~d~~~i~~~L~~~gI~y~~~~~g~~I~Vp~~~~~~~r~~La   98 (563)
                      ..|-.|++.+.|..|+..+.+.++..+.+=.|..|.|-..+.+.+...++
T Consensus         7 i~l~~GI~~e~AKkI~k~IK~~k~KVq~~IQGd~vRVtgKkrDdLQ~vi~   56 (74)
T d1in0a2           7 IKLKQGIETEMAKKITKLVKDSKIKVQTQIQGEQVRVTGKSRDDLQAVIQ   56 (74)
T ss_dssp             EEECCSCCHHHHHHHHHHHHHHTCSEEEEEETTEEEEEESCHHHHHHHHH
T ss_pred             EEEECCCCHHHHHHHHHHHHHCCCCCEEEECCCEEEECCCCHHHHHHHHH
T ss_conf             77212759899999999997238841599758277863788799999999


No 36 
>d1jmkc_ c.69.1.22 (C:) Surfactin synthetase, SrfA {Bacillus subtilis [TaxId: 1423]}
Probab=21.43  E-value=17  Score=12.72  Aligned_cols=20  Identities=20%  Similarity=0.229  Sum_probs=15.4

Q ss_pred             HHHHCHHHHHHHHHHHHHHH
Q ss_conf             98869998999999998637
Q gi|254780695|r  534 MIEINEERFAKILRKWARSE  553 (563)
Q Consensus       534 lv~e~Pe~vA~vLR~WL~ee  553 (563)
                      |-+++++++|++|+.||+.+
T Consensus       210 l~~~~~~~va~~I~~~L~~~  229 (230)
T d1jmkc_         210 LQGETLDRNAGILLEFLNTQ  229 (230)
T ss_dssp             TSHHHHHHHHHHHHHHHTCB
T ss_pred             CCCCCHHHHHHHHHHHHHHC
T ss_conf             48752999999999998333


No 37 
>d1r3da_ c.69.1.35 (A:) Hypothetical protein VC1974 {Vibrio cholerae [TaxId: 666]}
Probab=21.37  E-value=17  Score=12.70  Aligned_cols=20  Identities=25%  Similarity=0.272  Sum_probs=16.6

Q ss_pred             HHHHCHHHHHHHHHHHHHHH
Q ss_conf             98869998999999998637
Q gi|254780695|r  534 MIEINEERFAKILRKWARSE  553 (563)
Q Consensus       534 lv~e~Pe~vA~vLR~WL~ee  553 (563)
                      +--|+|+++++.|+.||++=
T Consensus       243 ~~~e~P~~~~~~i~~fl~~l  262 (264)
T d1r3da_         243 VHHEQPQAFAKIVQAMIHSI  262 (264)
T ss_dssp             HHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHCHHHHHHHHHHHHHHC
T ss_conf             48979999999999999863


No 38 
>d1qupa2 d.58.17.1 (A:2-73) Copper chaperone for superoxide dismutase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.75  E-value=18  Score=12.61  Aligned_cols=21  Identities=19%  Similarity=0.406  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHCCCCCEEEEEE
Q ss_conf             999999996057631489999
Q gi|254780695|r  136 EGEIARTIQSISGIVAARVHI  156 (563)
Q Consensus       136 egeL~rtI~~~~~V~~ArV~l  156 (563)
                      ..-+++.|..++||+++.|++
T Consensus        20 ~~~Iek~l~~~~gV~~v~vdl   40 (72)
T d1qupa2          20 VNDIKACLKNVPGINSLNFDI   40 (72)
T ss_dssp             HHHHHHHHTTCTTEEEEEEET
T ss_pred             HHHHHHHHHCCCCEEEEEEEC
T ss_conf             999999986699804999988


No 39 
>d1ni5a4 d.229.1.1 (A:227-314) tRNA-Ile-lysidine synthetase, TilS, substrate-binding domain {Escherichia coli [TaxId: 562]}
Probab=20.70  E-value=18  Score=12.60  Aligned_cols=23  Identities=26%  Similarity=0.709  Sum_probs=15.3

Q ss_pred             HHHHHHHCHHHHHHHHHHHHHHH
Q ss_conf             99998869998999999998637
Q gi|254780695|r  531 LLHMIEINEERFAKILRKWARSE  553 (563)
Q Consensus       531 i~~lv~e~Pe~vA~vLR~WL~ee  553 (563)
                      +..+..=.+.+.++|||-||...
T Consensus        17 i~~l~~Ls~~R~~nlLR~WL~~~   39 (88)
T d1ni5a4          17 IVPMLAMSDARRAAIIRRWLAGQ   39 (88)
T ss_dssp             SGGGTTSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHC
T ss_conf             89998299999999999999986


No 40 
>d1osda_ d.58.17.1 (A:) Mercuric ion binding protein MerP {Ralstonia metallidurans CH34 [TaxId: 266264]}
Probab=20.08  E-value=18  Score=12.52  Aligned_cols=20  Identities=15%  Similarity=0.355  Sum_probs=15.2

Q ss_pred             HHHHHHHHHCCCCCEEEEEE
Q ss_conf             99999996057631489999
Q gi|254780695|r  137 GEIARTIQSISGIVAARVHI  156 (563)
Q Consensus       137 geL~rtI~~~~~V~~ArV~l  156 (563)
                      .-+++.+..++||.+++|++
T Consensus        19 ~~Ie~~l~~~~gV~~v~v~~   38 (72)
T d1osda_          19 ITVKKAISKVEGVSKVDVTF   38 (72)
T ss_dssp             HHHHHHHHTSTTEEEEEEET
T ss_pred             HHHHHHHHCCCCCEEEEEEC
T ss_conf             99999997499967999986


Done!