RPSBLAST alignment for GI: 254780695 and conserved domain: TIGR00206

>gnl|CDD|129310 TIGR00206, fliF, flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF). Component of the M (cytoplasmic associated) ring, one of four rings (L,P,S,M) which make up the flagellar hook-basal body which is a major portion of the flagellar organelle. Although the basic structure of the flagella appears to be similar for all bacteria, additional rings and structures surrounding the basal body have been observed for some bacteria (eg Vibrio cholerae and Treponema pallidum). Length = 555
 Score =  173 bits (440), Expect = 1e-43
 Identities = 141/560 (25%), Positives = 239/560 (42%), Gaps = 69/560 (12%)

Query: 23  LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
           LILA   ++  ++F+   F   S  Y  L+V+L   D+ RIS  L + N+ + +S +G  
Sbjct: 27  LILAGFAIIAALVFLIL-FATKSQSYALLFVELSDQDLGRISQRLDQENVPYFLSSDGRI 85

Query: 83  ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
           I VP   V + R  LA +GLP +    G+ELFD  + FG+T F + I   RA+EGE++RT
Sbjct: 86  ILVPEDKVKELRAILAREGLPKTGMV-GFELFD-QDRFGITDFERSINLRRAIEGELSRT 143

Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAA 197
           I+++  + AA VH+ MP    F +    P+ASV +       ++ +     E + HL++ 
Sbjct: 144 IEALDPVKAASVHLAMPKDALFVEEQEPPSASVRLTLRPGSDLDTN---QIEGLVHLISY 200

Query: 198 AVPNLDMGDVTVLDSTGKLLTANEME----RNILGKSLSIVQAIQHEIEMNINKALAAFL 253
           AVP L+  ++ ++D  G +L  + ++     ++  K L     ++  ++  I+  L+  +
Sbjct: 201 AVPGLESDNIAIVDQNGTILNDSNLDGIDRIDLAEKQLKYKSKVEAMLQGEIDSILSPIV 260

Query: 254 GVDNFRSA-VVAELNMDTQQIREIVYDP------DSKVERSIRLSKDAQRSETSQPESAV 306
           GVDNF  A V A+L+   +   E  Y P      DS +  S    ++ Q    S      
Sbjct: 261 GVDNFVVARVNAKLDFSKETTTEEEYAPNELESSDSTIRSSQTQEEEYQGQGYSPGGVPG 320

Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQ-----------SNYEINTKSIATTHDNYKLE 355
                 P V D K       +NT   EE             NYE+             + 
Sbjct: 321 QESNTPPPVQDLK-------DNTGNYEESQYEKNVQLNEKKNYEVKRTIREIKVSLGIVV 373

Query: 356 RLSIAVVVN-KGRLTEVLGRSADQGK--IDSYLAEINKIVSAATGINSRRGDTITITSMD 412
            L  AVVV+ KG      G++  + K      +  I  ++ +A G +  RGD+IT+ ++ 
Sbjct: 374 DLIWAVVVDEKGDFVLPDGKNKREYKPLSLEEIKNIEDLLQSAFGYSPERGDSITVRNIS 433

Query: 413 FLENQLFNSGTVQVSFMD---ILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
           F  N++ N   ++ ++      L       I  LV +V  ++   +     RR    ++ 
Sbjct: 434 F--NRINNFREIEENYFASQRFLDFLTIASIVFLVLIVAFIIFFKIIRPLERRRREREEE 491

Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
              +                    +  + I LD           +L   IN    + S+ 
Sbjct: 492 LAKQAH----------LREEQEDEVEGELIKLD-----------DLVGGINEGDEEVSNA 530

Query: 530 RLLHMIEINEERFAKILRKW 549
            L  M +   E  AK++R W
Sbjct: 531 ELRAMAKEKPEDVAKLIRTW 550