RPSBLAST alignment for GI: 254780695 and conserved domain: TIGR00206
>gnl|CDD|129310 TIGR00206, fliF, flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF). Component of the M (cytoplasmic associated) ring, one of four rings (L,P,S,M) which make up the flagellar hook-basal body which is a major portion of the flagellar organelle. Although the basic structure of the flagella appears to be similar for all bacteria, additional rings and structures surrounding the basal body have been observed for some bacteria (eg Vibrio cholerae and Treponema pallidum). Length = 555
Score = 173 bits (440), Expect = 1e-43
Identities = 141/560 (25%), Positives = 239/560 (42%), Gaps = 69/560 (12%)
Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82
LILA ++ ++F+ F S Y L+V+L D+ RIS L + N+ + +S +G
Sbjct: 27 LILAGFAIIAALVFLIL-FATKSQSYALLFVELSDQDLGRISQRLDQENVPYFLSSDGRI 85
Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142
I VP V + R LA +GLP + G+ELFD + FG+T F + I RA+EGE++RT
Sbjct: 86 ILVPEDKVKELRAILAREGLPKTGMV-GFELFD-QDRFGITDFERSINLRRAIEGELSRT 143
Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAA 197
I+++ + AA VH+ MP F + P+ASV + ++ + E + HL++
Sbjct: 144 IEALDPVKAASVHLAMPKDALFVEEQEPPSASVRLTLRPGSDLDTN---QIEGLVHLISY 200
Query: 198 AVPNLDMGDVTVLDSTGKLLTANEME----RNILGKSLSIVQAIQHEIEMNINKALAAFL 253
AVP L+ ++ ++D G +L + ++ ++ K L ++ ++ I+ L+ +
Sbjct: 201 AVPGLESDNIAIVDQNGTILNDSNLDGIDRIDLAEKQLKYKSKVEAMLQGEIDSILSPIV 260
Query: 254 GVDNFRSA-VVAELNMDTQQIREIVYDP------DSKVERSIRLSKDAQRSETSQPESAV 306
GVDNF A V A+L+ + E Y P DS + S ++ Q S
Sbjct: 261 GVDNFVVARVNAKLDFSKETTTEEEYAPNELESSDSTIRSSQTQEEEYQGQGYSPGGVPG 320
Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQ-----------SNYEINTKSIATTHDNYKLE 355
P V D K +NT EE NYE+ +
Sbjct: 321 QESNTPPPVQDLK-------DNTGNYEESQYEKNVQLNEKKNYEVKRTIREIKVSLGIVV 373
Query: 356 RLSIAVVVN-KGRLTEVLGRSADQGK--IDSYLAEINKIVSAATGINSRRGDTITITSMD 412
L AVVV+ KG G++ + K + I ++ +A G + RGD+IT+ ++
Sbjct: 374 DLIWAVVVDEKGDFVLPDGKNKREYKPLSLEEIKNIEDLLQSAFGYSPERGDSITVRNIS 433
Query: 413 FLENQLFNSGTVQVSFMD---ILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469
F N++ N ++ ++ L I LV +V ++ + RR ++
Sbjct: 434 F--NRINNFREIEENYFASQRFLDFLTIASIVFLVLIVAFIIFFKIIRPLERRRREREEE 491
Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529
+ + + I LD +L IN + S+
Sbjct: 492 LAKQAH----------LREEQEDEVEGELIKLD-----------DLVGGINEGDEEVSNA 530
Query: 530 RLLHMIEINEERFAKILRKW 549
L M + E AK++R W
Sbjct: 531 ELRAMAKEKPEDVAKLIRTW 550