RPSBLAST alignment for GI: 254780695 and conserved domain: COG1766

>gnl|CDD|31952 COG1766, FliF, Flagellar biosynthesis/type III secretory pathway lipoprotein [Cell motility and secretion / Intracellular trafficking and secretion]. Length = 545
 Score =  323 bits (829), Expect = 8e-89
 Identities = 159/563 (28%), Positives = 262/563 (46%), Gaps = 33/563 (5%)

Query: 1   MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
             +L +L +F+     L + + ++L       + + +A   +   P Y  LY  L   D 
Sbjct: 6   RQLLKKLKEFWGK---LTKKQKIVLLGAGAALVAVLVALLLWSRQPKYRTLYSNLSEEDA 62

Query: 61  NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
            RI   L + NI +++S +G +I VP   V + R+ LAA+GLP S  N GYELFD  + F
Sbjct: 63  GRIVQELDQMNIPYKVSSDGGTILVPEDQVYELRLKLAAEGLPKSG-NVGYELFDDNSKF 121

Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
           GLT FMQ++   RALEGE+ARTI +I G+ AARVH+V+P    F +    P+ASV+++  
Sbjct: 122 GLTDFMQQVNYQRALEGELARTIVAIDGVKAARVHLVLPKDSLFVRDQQPPSASVVLKLK 181

Query: 181 NPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQA 236
                  +   AI HLV++AVP L   +VTV+D +G+LL+ ++ +         L +   
Sbjct: 182 PGRNLSREQVRAIVHLVSSAVPGLKPENVTVVDQSGRLLSQSDDDSGSDAALSQLKLKSD 241

Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK--VERSIRLSKDA 294
           ++  +E  I   L   LG  N R++V AEL+   ++  E  YDP+ +    RS +     
Sbjct: 242 VEKRLEKKIQNILEPVLGAGNVRASVTAELDFSAKESTEEKYDPNGREPAVRSEQTVTSL 301

Query: 295 -QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
            Q  + +Q      +E N P V+  +     S   T+KKEE +NYE++     T  +   
Sbjct: 302 SQSGQGTQGGVPGALESNQPPVAGNQNGKDTSNY-TEKKEETTNYEVDRTISHTKKEPGT 360

Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
           + RLS+AVVV+   L     +       D  L EI  +V  A G +++RGD++T+ ++ F
Sbjct: 361 IRRLSVAVVVDGKSLAGTGEKEYTP-LSDEELKEIEDLVRDAVGYDAKRGDSVTVVNIPF 419

Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL---RRLHNIDDAK 470
                           +  ++ F   +  +   +   LV F+ +  +   RR    +  +
Sbjct: 420 DR-SEDQEAEEGDGKPEWETQSFLDSLIPVALYLVVFLVLFIIVRPVIRPRRRRGAEALE 478

Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
             E   +       +   +              SN +        Q R    + +    R
Sbjct: 479 AAEEERQGPEEEDVLPEEIRD------------SNDEQLGLGDEEQRRGKEVLLE----R 522

Query: 531 LLHMIEINEERFAKILRKWARSE 553
           L  M + + ER AK++R+W   +
Sbjct: 523 LREMAKEDPERVAKVIRQWLNED 545