RPSBLAST alignment for GI: 254780695 and conserved domain: COG1766
>gnl|CDD|31952 COG1766, FliF, Flagellar biosynthesis/type III secretory pathway lipoprotein [Cell motility and secretion / Intracellular trafficking and secretion]. Length = 545
Score = 323 bits (829), Expect = 8e-89
Identities = 159/563 (28%), Positives = 262/563 (46%), Gaps = 33/563 (5%)
Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
+L +L +F+ L + + ++L + + +A + P Y LY L D
Sbjct: 6 RQLLKKLKEFWGK---LTKKQKIVLLGAGAALVAVLVALLLWSRQPKYRTLYSNLSEEDA 62
Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
RI L + NI +++S +G +I VP V + R+ LAA+GLP S N GYELFD + F
Sbjct: 63 GRIVQELDQMNIPYKVSSDGGTILVPEDQVYELRLKLAAEGLPKSG-NVGYELFDDNSKF 121
Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
GLT FMQ++ RALEGE+ARTI +I G+ AARVH+V+P F + P+ASV+++
Sbjct: 122 GLTDFMQQVNYQRALEGELARTIVAIDGVKAARVHLVLPKDSLFVRDQQPPSASVVLKLK 181
Query: 181 NPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQA 236
+ AI HLV++AVP L +VTV+D +G+LL+ ++ + L +
Sbjct: 182 PGRNLSREQVRAIVHLVSSAVPGLKPENVTVVDQSGRLLSQSDDDSGSDAALSQLKLKSD 241
Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK--VERSIRLSKDA 294
++ +E I L LG N R++V AEL+ ++ E YDP+ + RS +
Sbjct: 242 VEKRLEKKIQNILEPVLGAGNVRASVTAELDFSAKESTEEKYDPNGREPAVRSEQTVTSL 301
Query: 295 -QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
Q + +Q +E N P V+ + S T+KKEE +NYE++ T +
Sbjct: 302 SQSGQGTQGGVPGALESNQPPVAGNQNGKDTSNY-TEKKEETTNYEVDRTISHTKKEPGT 360
Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
+ RLS+AVVV+ L + D L EI +V A G +++RGD++T+ ++ F
Sbjct: 361 IRRLSVAVVVDGKSLAGTGEKEYTP-LSDEELKEIEDLVRDAVGYDAKRGDSVTVVNIPF 419
Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL---RRLHNIDDAK 470
+ ++ F + + + LV F+ + + RR + +
Sbjct: 420 DR-SEDQEAEEGDGKPEWETQSFLDSLIPVALYLVVFLVLFIIVRPVIRPRRRRGAEALE 478
Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
E + + + SN + Q R + + R
Sbjct: 479 AAEEERQGPEEEDVLPEEIRD------------SNDEQLGLGDEEQRRGKEVLLE----R 522
Query: 531 LLHMIEINEERFAKILRKWARSE 553
L M + + ER AK++R+W +
Sbjct: 523 LREMAKEDPERVAKVIRQWLNED 545