RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780695|ref|YP_003065108.1| flagellar MS-ring protein [Candidatus Liberibacter asiaticus str. psy62] (563 letters) >gnl|CDD|31952 COG1766, FliF, Flagellar biosynthesis/type III secretory pathway lipoprotein [Cell motility and secretion / Intracellular trafficking and secretion]. Length = 545 Score = 323 bits (829), Expect = 8e-89 Identities = 159/563 (28%), Positives = 262/563 (46%), Gaps = 33/563 (5%) Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60 +L +L +F+ L + + ++L + + +A + P Y LY L D Sbjct: 6 RQLLKKLKEFWGK---LTKKQKIVLLGAGAALVAVLVALLLWSRQPKYRTLYSNLSEEDA 62 Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120 RI L + NI +++S +G +I VP V + R+ LAA+GLP S N GYELFD + F Sbjct: 63 GRIVQELDQMNIPYKVSSDGGTILVPEDQVYELRLKLAAEGLPKSG-NVGYELFDDNSKF 121 Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180 GLT FMQ++ RALEGE+ARTI +I G+ AARVH+V+P F + P+ASV+++ Sbjct: 122 GLTDFMQQVNYQRALEGELARTIVAIDGVKAARVHLVLPKDSLFVRDQQPPSASVVLKLK 181 Query: 181 NPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQA 236 + AI HLV++AVP L +VTV+D +G+LL+ ++ + L + Sbjct: 182 PGRNLSREQVRAIVHLVSSAVPGLKPENVTVVDQSGRLLSQSDDDSGSDAALSQLKLKSD 241 Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK--VERSIRLSKDA 294 ++ +E I L LG N R++V AEL+ ++ E YDP+ + RS + Sbjct: 242 VEKRLEKKIQNILEPVLGAGNVRASVTAELDFSAKESTEEKYDPNGREPAVRSEQTVTSL 301 Query: 295 -QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353 Q + +Q +E N P V+ + S T+KKEE +NYE++ T + Sbjct: 302 SQSGQGTQGGVPGALESNQPPVAGNQNGKDTSNY-TEKKEETTNYEVDRTISHTKKEPGT 360 Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 + RLS+AVVV+ L + D L EI +V A G +++RGD++T+ ++ F Sbjct: 361 IRRLSVAVVVDGKSLAGTGEKEYTP-LSDEELKEIEDLVRDAVGYDAKRGDSVTVVNIPF 419 Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL---RRLHNIDDAK 470 + ++ F + + + LV F+ + + RR + + Sbjct: 420 DR-SEDQEAEEGDGKPEWETQSFLDSLIPVALYLVVFLVLFIIVRPVIRPRRRRGAEALE 478 Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530 E + + + SN + Q R + + R Sbjct: 479 AAEEERQGPEEEDVLPEEIRD------------SNDEQLGLGDEEQRRGKEVLLE----R 522 Query: 531 LLHMIEINEERFAKILRKWARSE 553 L M + + ER AK++R+W + Sbjct: 523 LREMAKEDPERVAKVIRQWLNED 545 >gnl|CDD|110511 pfam01514, YscJ_FliF, Secretory protein of YscJ/FliF family. This family includes proteins that are related to the YscJ lipoprotein, and the amino terminus of FliF, the flageller M-ring protein. The members of the YscJ family are thought to be involved in secretion of several proteins. The FliF protein ring is thought to be part of the export apparatus for flageller proteins, based on the similarity to YscJ proteins. Length = 206 Score = 172 bits (438), Expect = 2e-43 Identities = 69/207 (33%), Positives = 105/207 (50%), Gaps = 14/207 (6%) Query: 18 GRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS 77 +I + +L+ ++L P Y LY L D N + AL +A I S Sbjct: 3 KLRKIALAVVALLLLLLLLAGC------PDYVTLYTGLSEKDANEVLAALLQAGIPAEKS 56 Query: 78 DNGS--SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135 +G +I VP V +AR LAA+GLP G E + G + F + + AL Sbjct: 57 PDGDGGTILVPEDDVARARELLAAKGLPREG-FVGLEEIFPKDGLGSSPFEERARLIYAL 115 Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA---INPSVYKSAEAIR 192 E E++RT+ I G+++ARVHIV+P+ F + P+ASV I+ +N AI+ Sbjct: 116 EQELSRTLSQIDGVISARVHIVLPERSLFGRESQPPSASVFIKYSPGVNLDAQ--VPAIK 173 Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLTA 219 +LVA++VP L +V+V+D G LL+A Sbjct: 174 NLVASSVPGLKYDNVSVVDQPGTLLSA 200 >gnl|CDD|34287 COG4669, EscJ, Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]. Length = 246 Score = 63.4 bits (154), Expect = 2e-10 Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 11/167 (6%) Query: 51 LYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107 LY L + N + L I+ D G+S+ V S +A L GLP Sbjct: 24 LYTGLSEKEANEMLALLMSHGINAEKKADKDGGTSLLVEESDFAEAVEILNQNGLPRKKF 83 Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166 + ++F K ++S +E R A E ++ +T+ + G+++ARVHI +P+ K Sbjct: 84 TTLGDIFPK--DGLVSSPTEEKARLNYAKEQQLEQTLSKMDGVISARVHISLPEDDDEGK 141 Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 +ASV I+ +N S+Y S I+ LVA +VP L +++V+ Sbjct: 142 NALPSSASVFIKYSPDVNLSIYVS--QIKRLVANSVPGLQYENISVV 186 >gnl|CDD|30608 COG0259, PdxH, Pyridoxamine-phosphate oxidase [Coenzyme metabolism]. Length = 214 Score = 31.8 bits (72), Expect = 0.46 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%) Query: 507 DIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 D + SR S+I ++ SKQS R + E + A++ K+A EI Sbjct: 123 DAYFASRPRGSQIGAWASKQS--RPIASRAALEAKVAELTAKFADGEI 168 >gnl|CDD|33635 COG3844, COG3844, Kynureninase [Amino acid transport and metabolism]. Length = 407 Score = 31.4 bits (71), Expect = 0.57 Identities = 25/100 (25%), Positives = 37/100 (37%), Gaps = 14/100 (14%) Query: 167 IGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN 225 +GARP A R + + IR A D+ + D L+ A E Sbjct: 40 LGARPRAVTA-RLQQVATDEWGEGLIRSWNKAKADWFDL-PERLGDKLAPLIGARAGE-V 96 Query: 226 ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAE 265 ++ + SI N+ K LAA L R +V+E Sbjct: 97 VVTDTTSI----------NLFKVLAAALRPQEGRRVIVSE 126 >gnl|CDD|37137 KOG1926, KOG1926, KOG1926, Predicted regulator of rRNA gene transcription (MYB-binding protein) [Transcription]. Length = 1129 Score = 30.4 bits (68), Expect = 1.2 Identities = 27/124 (21%), Positives = 40/124 (32%), Gaps = 8/124 (6%) Query: 212 STGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ 271 G L +E IL KS S++ E N + + A L + Sbjct: 631 RNGVLNGFDEQLMTILQKSKSLL----GEESKNEEELTDELAQHLDQSLAFQELLQLLLI 686 Query: 272 QIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDK 331 QI D S E ++KD + E + E AV E P +S L Sbjct: 687 QIPSGETDSLSVEEDLDNVNKDVEVEEDDEEEEAVMEELLEPLLSL----LSDQSAPLRS 742 Query: 332 KEEQ 335 ++ Sbjct: 743 SSDR 746 >gnl|CDD|34561 COG4953, PbpC, Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell envelope biogenesis, outer membrane]. Length = 733 Score = 29.9 bits (67), Expect = 1.9 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%) Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLTANEME---RNILGKSLSIVQAIQHEIEMNINKALA 250 L+ AA L G V ST + A +E R + GK I +AIQ E ++ + L Sbjct: 93 LLRAAWQTLTSGRVVSGGSTLTMQVARLLEPRPRTLGGKIRQIWRAIQLESRLSKREILE 152 Query: 251 AFL 253 +L Sbjct: 153 LYL 155 >gnl|CDD|37797 KOG2586, KOG2586, KOG2586, Pyridoxamine-phosphate oxidase [Coenzyme transport and metabolism]. Length = 228 Score = 28.8 bits (64), Expect = 3.9 Identities = 8/28 (28%), Positives = 14/28 (50%) Query: 501 LDSSNQDIFSHSRNLQSRINSYVSKQSD 528 L + + SR S+I ++ S QS+ Sbjct: 128 LPREEAEAYFKSRPRASQIGAWASPQSE 155 >gnl|CDD|33186 COG3379, COG3379, Uncharacterized conserved protein [Function unknown]. Length = 471 Score = 28.8 bits (64), Expect = 4.1 Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 5/57 (8%) Query: 444 VFLVGTLLVTFLGLHALR-RLHNIDDAKKGEVGGKSILSPPPISSA----VTTGLMP 495 L+G V R L N++ K GK PPI+ A + TG P Sbjct: 6 TLLIGLDGVPPSLFRQFRDNLPNLNKLMKNGSFGKLESGIPPITPAAWPSLFTGYNP 62 >gnl|CDD|35590 KOG0369, KOG0369, KOG0369, Pyruvate carboxylase [Energy production and conversion]. Length = 1176 Score = 28.8 bits (64), Expect = 4.6 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%) Query: 43 VNSPHYDNLYVKLEVSDVNRISVA--LSEANIDFRI 76 V SPHYD+L VK+ A + A I+FRI Sbjct: 413 VISPHYDSLLVKVICHGSTYEIAARKMIRALIEFRI 448 >gnl|CDD|35277 KOG0054, KOG0054, KOG0054, Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]. Length = 1381 Score = 27.9 bits (62), Expect = 8.0 Identities = 10/27 (37%), Positives = 17/27 (62%) Query: 439 VINALVFLVGTLLVTFLGLHALRRLHN 465 V ++L+ L+ + L GL A R+LH+ Sbjct: 869 VASSLLTLLRSFLFAKGGLKASRKLHD 895 >gnl|CDD|133041 cd04198, eIF-2B_gamma_N, The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 214 Score = 27.6 bits (62), Expect = 9.1 Identities = 28/122 (22%), Positives = 42/122 (34%), Gaps = 14/122 (11%) Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445 AEI+ + + ++ D +TI + + GT D L RH I Sbjct: 59 AEISTYLRSFPLNLKQKLDEVTIVLDE-------DMGTA-----DSL-RHIRKKIKKDFL 105 Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPN-DNIALDSS 504 ++ L+T L L L LH DA + +S + D I LD Sbjct: 106 VLSCDLITDLPLIELVDLHRSHDASLTVLLYPPPVSSEQKGGKGKSKKADERDVIGLDEK 165 Query: 505 NQ 506 Q Sbjct: 166 TQ 167 >gnl|CDD|36376 KOG1161, KOG1161, KOG1161, Protein involved in vacuolar polyphosphate accumulation, contains SPX domain [Inorganic ion transport and metabolism]. Length = 310 Score = 27.6 bits (61), Expect = 9.4 Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 10/67 (14%) Query: 497 DNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL-HMIEINEERFAKILRKWARSEIE 555 + I S + L+ V ++ LL + +N FAKIL+K Sbjct: 80 EKIDALSLEPPSAEEMKELREE---LVDFHGEMVLLENFSRLNYTGFAKILKKH------ 130 Query: 556 DRYTQHI 562 D+ T + Sbjct: 131 DKRTGYR 137 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.317 0.131 0.353 Gapped Lambda K H 0.267 0.0740 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 6,153,609 Number of extensions: 318212 Number of successful extensions: 911 Number of sequences better than 10.0: 1 Number of HSP's gapped: 900 Number of HSP's successfully gapped: 22 Length of query: 563 Length of database: 6,263,737 Length adjustment: 99 Effective length of query: 464 Effective length of database: 4,124,446 Effective search space: 1913742944 Effective search space used: 1913742944 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 60 (26.9 bits)