RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780695|ref|YP_003065108.1| flagellar MS-ring protein
[Candidatus Liberibacter asiaticus str. psy62]
(563 letters)
>gnl|CDD|31952 COG1766, FliF, Flagellar biosynthesis/type III secretory pathway
lipoprotein [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 545
Score = 323 bits (829), Expect = 8e-89
Identities = 159/563 (28%), Positives = 262/563 (46%), Gaps = 33/563 (5%)
Query: 1 MAILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDV 60
+L +L +F+ L + + ++L + + +A + P Y LY L D
Sbjct: 6 RQLLKKLKEFWGK---LTKKQKIVLLGAGAALVAVLVALLLWSRQPKYRTLYSNLSEEDA 62
Query: 61 NRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSF 120
RI L + NI +++S +G +I VP V + R+ LAA+GLP S N GYELFD + F
Sbjct: 63 GRIVQELDQMNIPYKVSSDGGTILVPEDQVYELRLKLAAEGLPKSG-NVGYELFDDNSKF 121
Query: 121 GLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRAI 180
GLT FMQ++ RALEGE+ARTI +I G+ AARVH+V+P F + P+ASV+++
Sbjct: 122 GLTDFMQQVNYQRALEGELARTIVAIDGVKAARVHLVLPKDSLFVRDQQPPSASVVLKLK 181
Query: 181 NPSVY--KSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNIL--GKSLSIVQA 236
+ AI HLV++AVP L +VTV+D +G+LL+ ++ + L +
Sbjct: 182 PGRNLSREQVRAIVHLVSSAVPGLKPENVTVVDQSGRLLSQSDDDSGSDAALSQLKLKSD 241
Query: 237 IQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSK--VERSIRLSKDA 294
++ +E I L LG N R++V AEL+ ++ E YDP+ + RS +
Sbjct: 242 VEKRLEKKIQNILEPVLGAGNVRASVTAELDFSAKESTEEKYDPNGREPAVRSEQTVTSL 301
Query: 295 -QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYK 353
Q + +Q +E N P V+ + S T+KKEE +NYE++ T +
Sbjct: 302 SQSGQGTQGGVPGALESNQPPVAGNQNGKDTSNY-TEKKEETTNYEVDRTISHTKKEPGT 360
Query: 354 LERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413
+ RLS+AVVV+ L + D L EI +V A G +++RGD++T+ ++ F
Sbjct: 361 IRRLSVAVVVDGKSLAGTGEKEYTP-LSDEELKEIEDLVRDAVGYDAKRGDSVTVVNIPF 419
Query: 414 LENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLHAL---RRLHNIDDAK 470
+ ++ F + + + LV F+ + + RR + +
Sbjct: 420 DR-SEDQEAEEGDGKPEWETQSFLDSLIPVALYLVVFLVLFIIVRPVIRPRRRRGAEALE 478
Query: 471 KGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLR 530
E + + + SN + Q R + + R
Sbjct: 479 AAEEERQGPEEEDVLPEEIRD------------SNDEQLGLGDEEQRRGKEVLLE----R 522
Query: 531 LLHMIEINEERFAKILRKWARSE 553
L M + + ER AK++R+W +
Sbjct: 523 LREMAKEDPERVAKVIRQWLNED 545
>gnl|CDD|110511 pfam01514, YscJ_FliF, Secretory protein of YscJ/FliF family. This
family includes proteins that are related to the YscJ
lipoprotein, and the amino terminus of FliF, the
flageller M-ring protein. The members of the YscJ family
are thought to be involved in secretion of several
proteins. The FliF protein ring is thought to be part of
the export apparatus for flageller proteins, based on
the similarity to YscJ proteins.
Length = 206
Score = 172 bits (438), Expect = 2e-43
Identities = 69/207 (33%), Positives = 105/207 (50%), Gaps = 14/207 (6%)
Query: 18 GRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRIS 77
+I + +L+ ++L P Y LY L D N + AL +A I S
Sbjct: 3 KLRKIALAVVALLLLLLLLAGC------PDYVTLYTGLSEKDANEVLAALLQAGIPAEKS 56
Query: 78 DNGS--SISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRAL 135
+G +I VP V +AR LAA+GLP G E + G + F + + AL
Sbjct: 57 PDGDGGTILVPEDDVARARELLAAKGLPREG-FVGLEEIFPKDGLGSSPFEERARLIYAL 115
Query: 136 EGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMIRA---INPSVYKSAEAIR 192
E E++RT+ I G+++ARVHIV+P+ F + P+ASV I+ +N AI+
Sbjct: 116 EQELSRTLSQIDGVISARVHIVLPERSLFGRESQPPSASVFIKYSPGVNLDAQ--VPAIK 173
Query: 193 HLVAAAVPNLDMGDVTVLDSTGKLLTA 219
+LVA++VP L +V+V+D G LL+A
Sbjct: 174 NLVASSVPGLKYDNVSVVDQPGTLLSA 200
>gnl|CDD|34287 COG4669, EscJ, Type III secretory pathway, lipoprotein EscJ
[Intracellular trafficking and secretion].
Length = 246
Score = 63.4 bits (154), Expect = 2e-10
Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 11/167 (6%)
Query: 51 LYVKLEVSDVNRISVALSEANIDFR---ISDNGSSISVPSSMVGKARIHLAAQGLPSSSS 107
LY L + N + L I+ D G+S+ V S +A L GLP
Sbjct: 24 LYTGLSEKEANEMLALLMSHGINAEKKADKDGGTSLLVEESDFAEAVEILNQNGLPRKKF 83
Query: 108 NSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSFRK 166
+ ++F K ++S +E R A E ++ +T+ + G+++ARVHI +P+ K
Sbjct: 84 TTLGDIFPK--DGLVSSPTEEKARLNYAKEQQLEQTLSKMDGVISARVHISLPEDDDEGK 141
Query: 167 IGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210
+ASV I+ +N S+Y S I+ LVA +VP L +++V+
Sbjct: 142 NALPSSASVFIKYSPDVNLSIYVS--QIKRLVANSVPGLQYENISVV 186
>gnl|CDD|30608 COG0259, PdxH, Pyridoxamine-phosphate oxidase [Coenzyme
metabolism].
Length = 214
Score = 31.8 bits (72), Expect = 0.46
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 507 DIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554
D + SR S+I ++ SKQS R + E + A++ K+A EI
Sbjct: 123 DAYFASRPRGSQIGAWASKQS--RPIASRAALEAKVAELTAKFADGEI 168
>gnl|CDD|33635 COG3844, COG3844, Kynureninase [Amino acid transport and
metabolism].
Length = 407
Score = 31.4 bits (71), Expect = 0.57
Identities = 25/100 (25%), Positives = 37/100 (37%), Gaps = 14/100 (14%)
Query: 167 IGARPTASVMIRAINPSVYK-SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERN 225
+GARP A R + + IR A D+ + D L+ A E
Sbjct: 40 LGARPRAVTA-RLQQVATDEWGEGLIRSWNKAKADWFDL-PERLGDKLAPLIGARAGE-V 96
Query: 226 ILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAE 265
++ + SI N+ K LAA L R +V+E
Sbjct: 97 VVTDTTSI----------NLFKVLAAALRPQEGRRVIVSE 126
>gnl|CDD|37137 KOG1926, KOG1926, KOG1926, Predicted regulator of rRNA gene
transcription (MYB-binding protein) [Transcription].
Length = 1129
Score = 30.4 bits (68), Expect = 1.2
Identities = 27/124 (21%), Positives = 40/124 (32%), Gaps = 8/124 (6%)
Query: 212 STGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQ 271
G L +E IL KS S++ E N + + A L +
Sbjct: 631 RNGVLNGFDEQLMTILQKSKSLL----GEESKNEEELTDELAQHLDQSLAFQELLQLLLI 686
Query: 272 QIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDK 331
QI D S E ++KD + E + E AV E P +S L
Sbjct: 687 QIPSGETDSLSVEEDLDNVNKDVEVEEDDEEEEAVMEELLEPLLSL----LSDQSAPLRS 742
Query: 332 KEEQ 335
++
Sbjct: 743 SSDR 746
>gnl|CDD|34561 COG4953, PbpC, Membrane carboxypeptidase/penicillin-binding protein
PbpC [Cell envelope biogenesis, outer membrane].
Length = 733
Score = 29.9 bits (67), Expect = 1.9
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLTANEME---RNILGKSLSIVQAIQHEIEMNINKALA 250
L+ AA L G V ST + A +E R + GK I +AIQ E ++ + L
Sbjct: 93 LLRAAWQTLTSGRVVSGGSTLTMQVARLLEPRPRTLGGKIRQIWRAIQLESRLSKREILE 152
Query: 251 AFL 253
+L
Sbjct: 153 LYL 155
>gnl|CDD|37797 KOG2586, KOG2586, KOG2586, Pyridoxamine-phosphate oxidase [Coenzyme
transport and metabolism].
Length = 228
Score = 28.8 bits (64), Expect = 3.9
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 501 LDSSNQDIFSHSRNLQSRINSYVSKQSD 528
L + + SR S+I ++ S QS+
Sbjct: 128 LPREEAEAYFKSRPRASQIGAWASPQSE 155
>gnl|CDD|33186 COG3379, COG3379, Uncharacterized conserved protein [Function
unknown].
Length = 471
Score = 28.8 bits (64), Expect = 4.1
Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 444 VFLVGTLLVTFLGLHALR-RLHNIDDAKKGEVGGKSILSPPPISSA----VTTGLMP 495
L+G V R L N++ K GK PPI+ A + TG P
Sbjct: 6 TLLIGLDGVPPSLFRQFRDNLPNLNKLMKNGSFGKLESGIPPITPAAWPSLFTGYNP 62
>gnl|CDD|35590 KOG0369, KOG0369, KOG0369, Pyruvate carboxylase [Energy production
and conversion].
Length = 1176
Score = 28.8 bits (64), Expect = 4.6
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 43 VNSPHYDNLYVKLEVSDVNRISVA--LSEANIDFRI 76
V SPHYD+L VK+ A + A I+FRI
Sbjct: 413 VISPHYDSLLVKVICHGSTYEIAARKMIRALIEFRI 448
>gnl|CDD|35277 KOG0054, KOG0054, KOG0054, Multidrug resistance-associated
protein/mitoxantrone resistance protein, ABC superfamily
[Secondary metabolites biosynthesis, transport and
catabolism].
Length = 1381
Score = 27.9 bits (62), Expect = 8.0
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 439 VINALVFLVGTLLVTFLGLHALRRLHN 465
V ++L+ L+ + L GL A R+LH+
Sbjct: 869 VASSLLTLLRSFLFAKGGLKASRKLHD 895
>gnl|CDD|133041 cd04198, eIF-2B_gamma_N, The N-terminal domain of gamma subunit of
the eIF-2B is a subfamily of glycosyltransferase 2.
N-terminal domain of gamma subunit of the eukaryotic
translation initiation factor 2B (eIF-2B): eIF-2B is a
guanine nucleotide-exchange factor which mediates the
exchange of GDP (bound to initiation factor eIF2) for
GTP, generating active eIF2.GTP complex. EIF2B is a
complex multimeric protein consisting of five subunits
named alpha, beta, gamma, delta and epsilon. Subunit
gamma shares sequence similarity with epsilon subunit,
and with a family of bifunctional nucleotide-binding
enzymes such as ADP-glucose pyrophosphorylase,
suggesting that epsilon subunit may play roles in
nucleotide binding activity. In yeast, eIF2B gamma
enhances the activity of eIF2B-epsilon leading to the
idea that these subunits form the catalytic subcomplex.
Length = 214
Score = 27.6 bits (62), Expect = 9.1
Identities = 28/122 (22%), Positives = 42/122 (34%), Gaps = 14/122 (11%)
Query: 386 AEINKIVSAATGINSRRGDTITITSMDFLENQLFNSGTVQVSFMDILSRHFATVINALVF 445
AEI+ + + ++ D +TI + + GT D L RH I
Sbjct: 59 AEISTYLRSFPLNLKQKLDEVTIVLDE-------DMGTA-----DSL-RHIRKKIKKDFL 105
Query: 446 LVGTLLVTFLGLHALRRLHNIDDAKKGEVGGKSILSPPPISSAVTTGLMPN-DNIALDSS 504
++ L+T L L L LH DA + +S + D I LD
Sbjct: 106 VLSCDLITDLPLIELVDLHRSHDASLTVLLYPPPVSSEQKGGKGKSKKADERDVIGLDEK 165
Query: 505 NQ 506
Q
Sbjct: 166 TQ 167
>gnl|CDD|36376 KOG1161, KOG1161, KOG1161, Protein involved in vacuolar
polyphosphate accumulation, contains SPX domain
[Inorganic ion transport and metabolism].
Length = 310
Score = 27.6 bits (61), Expect = 9.4
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 10/67 (14%)
Query: 497 DNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRLL-HMIEINEERFAKILRKWARSEIE 555
+ I S + L+ V ++ LL + +N FAKIL+K
Sbjct: 80 EKIDALSLEPPSAEEMKELREE---LVDFHGEMVLLENFSRLNYTGFAKILKKH------ 130
Query: 556 DRYTQHI 562
D+ T +
Sbjct: 131 DKRTGYR 137
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.317 0.131 0.353
Gapped
Lambda K H
0.267 0.0740 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 6,153,609
Number of extensions: 318212
Number of successful extensions: 911
Number of sequences better than 10.0: 1
Number of HSP's gapped: 900
Number of HSP's successfully gapped: 22
Length of query: 563
Length of database: 6,263,737
Length adjustment: 99
Effective length of query: 464
Effective length of database: 4,124,446
Effective search space: 1913742944
Effective search space used: 1913742944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.9 bits)