RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780695|ref|YP_003065108.1| flagellar MS-ring protein [Candidatus Liberibacter asiaticus str. psy62] (563 letters) >gnl|CDD|180348 PRK06007, fliF, flagellar MS-ring protein; Reviewed. Length = 542 Score = 390 bits (1005), Expect = e-109 Identities = 159/558 (28%), Positives = 278/558 (49%), Gaps = 39/558 (6%) Query: 3 ILDQLLQFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNR 62 ++++L +F + L + R + L + +A + + P Y LY L D + Sbjct: 8 LMEKLKEFLQK---LSKKRKIALIGAGAAVVAAIVALVLWASRPDYRVLYSNLSDQDAGQ 64 Query: 63 ISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGL 122 I AL +A I ++++D+G +I VP+ V + R+ LA++GLP S S GYELFDK + FG+ Sbjct: 65 IVAALDQAGIPYKVADDGGTILVPADKVDELRLKLASEGLPKSGS-VGYELFDKSSGFGI 123 Query: 123 TSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI----- 177 T F +++ RALEGE+ARTI+S+ G+ AARVH+ +P F + P+ASV++ Sbjct: 124 TQFEEQVNYQRALEGELARTIESLDGVKAARVHLALPKESVFVREQQPPSASVVLTLKPG 183 Query: 178 RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLT--ANEMERNILGKSLSIVQ 235 RA++P + +AI HLVA+AVP L +VT++D G+LL+ +++ ++ K L Q Sbjct: 184 RALDP---EQVKAIVHLVASAVPGLKPENVTIVDQNGRLLSDGSDDSASDLAEKQLKYKQ 240 Query: 236 AIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQ 295 ++ ++ I LA LG N R+ V A+L+ D + E YDP+ V RS + ++ Sbjct: 241 QVEKRLQQRIESILAPILGPGNVRAQVTADLDFDKVEQTEETYDPNQGVVRSEQTVEETS 300 Query: 296 RSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLE 355 + P N P + S ++ + EE +NYE++ T ++ Sbjct: 301 TGQGGNPGGVPGALSNQPPNQAQGADGGNSTSSSSRSEETTNYEVDKTISHTKKQPGTVK 360 Query: 356 RLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDFLE 415 RLS+AVVV+ L + G Q D LA+I K+V +A G +++RGD++ + ++ F E Sbjct: 361 RLSVAVVVDGKPLADGDGEVEYQPLSDEELAQIEKLVRSAVGFDAKRGDSVNVVNVPFDE 420 Query: 416 NQLFNSGTV----QVSFMDILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDAKK 471 + + Q FMD+ + A L+ +L+ F+ LR L ++ + Sbjct: 421 EAEEEAAELPFWQQPWFMDL-------IKLAAGALLILILIFFVLRPRLRPLLPEEELAE 473 Query: 472 GEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDLRL 531 E + +A+ L ++ + + + +++ + RL Sbjct: 474 EEAAAEEAALEEDEEAALEVELSDDEELEEEKAEEEL--------------KYEDLLKRL 519 Query: 532 LHMIEINEERFAKILRKW 549 + + + E A++LR W Sbjct: 520 RELAKEDPEEVAQVLRTW 537 >gnl|CDD|180873 PRK07193, fliF, flagellar MS-ring protein; Reviewed. Length = 552 Score = 194 bits (496), Expect = 4e-50 Identities = 130/435 (29%), Positives = 212/435 (48%), Gaps = 52/435 (11%) Query: 2 AILDQLLQFFKSGTSLGRTR----ILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEV 57 +LD+L Q + L R + +LA ++ I+L + + +S Y LY E Sbjct: 7 DMLDKLKQKWSPFQLLRGNRKLILLALLALLVAAAIVLSL----WRSSQGYRPLYGSQEN 62 Query: 58 SDVNRISVALSEANIDFRISDNGSSISVPSSMVGKARIHLAAQG----LPSSSSNSGYEL 113 +++ L I +RI + + VP +GKAR+ LAA+G LPS G EL Sbjct: 63 VPTSQVVEVLEAEGISYRIDPDSGQVLVPEDQLGKARMLLAAKGVKAKLPS-----GLEL 117 Query: 114 FDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSF-RKIGARPT 172 DK + G + FMQ + R+LEGE+A++I ++ + +ARVH+ +P SF R+ P+ Sbjct: 118 LDKDSPLGTSQFMQNVRYRRSLEGELAQSIMALDAVESARVHLAIPKSSSFVRQDPELPS 177 Query: 173 ASVMI-----RAINPSVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTAN-EMERNI 226 ASV++ + ++P EAI +LVA +VP L +V+V+D G LL+A + Sbjct: 178 ASVVLRLKPGQKLSPE---QVEAIVNLVAGSVPGLKPANVSVVDQHGNLLSAGINANGDG 234 Query: 227 LG---KSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPDS 282 K L Q ++ N L LG NFR +V A+++ ++ RE Y P Sbjct: 235 SQASKKQLEYAQELEQSTIKNAASMLTPVLGPGNFRVSVAADVDFSRVEETREH-YGPAP 293 Query: 283 KVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTD----KKEEQSNY 338 V + + E S + A+ + ++ S+R P + +N D + E Y Sbjct: 294 VV------TNENTSQENSNDDMALGIPGSL---SNRPPPQSTAGQNPDARNLRSESSRQY 344 Query: 339 EINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGI 398 + T + +LE+LS+AVV+NK G + +Q LA++ +V A GI Sbjct: 345 AYDRSVRHTRYQQGQLEKLSVAVVLNKAAAPLK-GWTPEQ------LAQLKAMVEDAAGI 397 Query: 399 NSRRGDTITITSMDF 413 ++ RGD++TI+S DF Sbjct: 398 DAARGDSLTISSFDF 412 >gnl|CDD|129310 TIGR00206, fliF, flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF). Component of the M (cytoplasmic associated) ring, one of four rings (L,P,S,M) which make up the flagellar hook-basal body which is a major portion of the flagellar organelle. Although the basic structure of the flagella appears to be similar for all bacteria, additional rings and structures surrounding the basal body have been observed for some bacteria (eg Vibrio cholerae and Treponema pallidum). Length = 555 Score = 173 bits (440), Expect = 1e-43 Identities = 141/560 (25%), Positives = 239/560 (42%), Gaps = 69/560 (12%) Query: 23 LILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALSEANIDFRISDNGSS 82 LILA ++ ++F+ F S Y L+V+L D+ RIS L + N+ + +S +G Sbjct: 27 LILAGFAIIAALVFLIL-FATKSQSYALLFVELSDQDLGRISQRLDQENVPYFLSSDGRI 85 Query: 83 ISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQEITRVRALEGEIART 142 I VP V + R LA +GLP + G+ELFD + FG+T F + I RA+EGE++RT Sbjct: 86 ILVPEDKVKELRAILAREGLPKTGMV-GFELFD-QDRFGITDFERSINLRRAIEGELSRT 143 Query: 143 IQSISGIVAARVHIVMPDMGSFRKIGARPTASVMI-----RAINPSVYKSAEAIRHLVAA 197 I+++ + AA VH+ MP F + P+ASV + ++ + E + HL++ Sbjct: 144 IEALDPVKAASVHLAMPKDALFVEEQEPPSASVRLTLRPGSDLDTN---QIEGLVHLISY 200 Query: 198 AVPNLDMGDVTVLDSTGKLLTANEME----RNILGKSLSIVQAIQHEIEMNINKALAAFL 253 AVP L+ ++ ++D G +L + ++ ++ K L ++ ++ I+ L+ + Sbjct: 201 AVPGLESDNIAIVDQNGTILNDSNLDGIDRIDLAEKQLKYKSKVEAMLQGEIDSILSPIV 260 Query: 254 GVDNFRSA-VVAELNMDTQQIREIVYDP------DSKVERSIRLSKDAQRSETSQPESAV 306 GVDNF A V A+L+ + E Y P DS + S ++ Q S Sbjct: 261 GVDNFVVARVNAKLDFSKETTTEEEYAPNELESSDSTIRSSQTQEEEYQGQGYSPGGVPG 320 Query: 307 TVEQNMPHVSDRKVPLPRSLENTDKKEEQ-----------SNYEINTKSIATTHDNYKLE 355 P V D K +NT EE NYE+ + Sbjct: 321 QESNTPPPVQDLK-------DNTGNYEESQYEKNVQLNEKKNYEVKRTIREIKVSLGIVV 373 Query: 356 RLSIAVVVN-KGRLTEVLGRSADQGK--IDSYLAEINKIVSAATGINSRRGDTITITSMD 412 L AVVV+ KG G++ + K + I ++ +A G + RGD+IT+ ++ Sbjct: 374 DLIWAVVVDEKGDFVLPDGKNKREYKPLSLEEIKNIEDLLQSAFGYSPERGDSITVRNIS 433 Query: 413 FLENQLFNSGTVQVSFMD---ILSRHFATVINALVFLVGTLLVTFLGLHALRRLHNIDDA 469 F N++ N ++ ++ L I LV +V ++ + RR ++ Sbjct: 434 F--NRINNFREIEENYFASQRFLDFLTIASIVFLVLIVAFIIFFKIIRPLERRRREREEE 491 Query: 470 KKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQSDL 529 + + + I LD +L IN + S+ Sbjct: 492 LAKQAH----------LREEQEDEVEGELIKLD-----------DLVGGINEGDEEVSNA 530 Query: 530 RLLHMIEINEERFAKILRKW 549 L M + E AK++R W Sbjct: 531 ELRAMAKEKPEDVAKLIRTW 550 >gnl|CDD|183757 PRK12800, fliF, flagellar MS-ring protein; Reviewed. Length = 574 Score = 135 bits (340), Expect = 4e-32 Identities = 131/568 (23%), Positives = 252/568 (44%), Gaps = 36/568 (6%) Query: 9 QFFKSGTSLGRTRILILASVILVPIMLFMAARFFVNSPHYDNLYVKLEVSDVNRISVALS 68 Q+F SL TR L + ++I + + +A F+ P Y +LY L+ + L Sbjct: 19 QWFDRVRSLQITRKLTMMAMIALAVAAGLAVFFWSQKPGYQSLYTGLDEKGNAEAADLLR 78 Query: 69 EANIDFRISDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELFDKVNSFGLTSFMQE 128 A I F+I +ISVP + AR+ LA GL + G+EL +K FG++ F++ Sbjct: 79 TAQIPFKIDQGTGAISVPQDRLYDARLKLAGSGLTGKETGGGFELMEKDPGFGVSQFVEN 138 Query: 129 ITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPTASVM--IRAINPSVYK 186 ALE E++RTI ++ + ARVH+ +P +F + +ASV+ +R Sbjct: 139 ARYQHALETELSRTIGTLRPVREARVHLAIPKPSAFTRQRDVASASVVLELRGGQGLERN 198 Query: 187 SAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMN-- 244 +AI +LVA+++P++ VTV+D +G++L+ + + + Q + E N Sbjct: 199 QVDAIVNLVASSIPDMTPERVTVVDQSGRMLSIADPNSDAAQHAAQFEQVRRQESSYNQR 258 Query: 245 INKALAAFLGVDNFRSAVVAELNMD-TQQIREIVYDPDSKVERSIRLSKDA--------- 294 I + L G V +++ ++ RE+ Y+ + RS ++S + Sbjct: 259 IRELLEPMTGPGRVNPEVSVDMDFSVVEEAREL-YNGEPAKLRSEQVSDTSTSATGPQGP 317 Query: 295 ----QRSETSQPESAVTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHD 350 S P A P ++ + + + K + NYE++ T Sbjct: 318 PGATSNSPGQPPAPAAAGAPGTPAAANGQAAAAAAPTESSKSATR-NYELDRTLQHTRQP 376 Query: 351 NYKLERLSIAVVVNKGRLTEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITS 410 +++R+S+AV+++ G+ +Q + L I +V A G ++ RGDT+++ + Sbjct: 377 AGRIKRVSVAVLLDNVPRPGAKGKMVEQPLTAAELTRIEGLVKQAVGFDAARGDTVSVMN 436 Query: 411 MDFLENQLFNSGTVQVSFMDILSRHFATVINALVFLVGTLLVTFLGLH----ALRRLHNI 466 F+ + +G + + V N L LVG ++V L LR+L + Sbjct: 437 APFVREAV--AGEEGPKWWED-----PRVQNGLRLLVGAVVVLALLFGVVRPTLRQLTGV 489 Query: 467 DDAKKGEVGGKSILSPPPISSAVTTGLMPNDNIALDSSNQDIFSHSRNLQSRINSYVSKQ 526 K+ + G + +P + ++ +D+ L +D S ++ + I + + Sbjct: 490 TPVKEKQKKGGNDGTP----QSADVRMVDDDDDLLPRLGEDTASIGQDKKLAIALPDAYE 545 Query: 527 SDLRLL-HMIEINEERFAKILRKWARSE 553 +RL ++ + +R A++++ W SE Sbjct: 546 ERMRLAREAVKADSKRVAQVVKGWVASE 573 >gnl|CDD|149415 pfam08345, YscJ_FliF_C, Flagellar M-ring protein C-terminal. This domain is found in bacterial flagellar M-ring (FliF) proteins together with the YscJ/FliF domain (pfam01514). Length = 162 Score = 128 bits (325), Expect = 3e-30 Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 3/165 (1%) Query: 249 LAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTV 308 L +G N R V A+L+ D + E YDP+ V RS + S++ + + V Sbjct: 1 LEPVVGPGNVRVQVTADLDFDKVEQTEETYDPNGGVVRSEQTSEE-SSTGSGAAGGVPGV 59 Query: 309 EQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRL 368 N+P P + + EE NYE++ T K++RLS+AVVV+ + Sbjct: 60 LSNLPPA-PATAPGGNGSSTSSRSEETRNYEVSRTVRHTVQAPGKIKRLSVAVVVDGVYV 118 Query: 369 TEVLGRSADQGKIDSYLAEINKIVSAATGINSRRGDTITITSMDF 413 G++A + LA+I +V +A G ++ RGD++T+ SM F Sbjct: 119 VA-DGKAAYVPRSPEELAQIEALVKSAVGFDAARGDSVTVVSMPF 162 >gnl|CDD|162912 TIGR02544, III_secr_YscJ, type III secretion apparatus lipoprotein, YscJ/HrcJ family. All members of this protein family are predicted lipoproteins with a conserved Cys near the N-terminus for cleavage and modification, and are part of known or predicted type III secretion systems. Members are found in both plant and animal pathogens, including the obligately intracellular chlamydial species and (non-pathogenic) root nodule bacteria. The most closely related proteins outside this family are examples of the flagellar M-ring protein FliF. Length = 193 Score = 82.3 bits (204), Expect = 3e-16 Identities = 50/169 (29%), Positives = 81/169 (47%), Gaps = 11/169 (6%) Query: 49 DNLYVKLEVSDVNRISVALSEANID---FRISDNGSSISVPSSMVGKARIHLAAQGLPSS 105 D LY L + N + L ID G +ISV S +A L GLP Sbjct: 20 DLLYSGLSEREANEMLAVLMRHGIDAEKEGSGKGGYTISVEESDFARAVELLRQYGLPRQ 79 Query: 106 SSNSGYELFDKVNSFGLTSFMQEITR-VRALEGEIARTIQSISGIVAARVHIVMPDMGSF 164 + ELF K + ++S +E R + A+E + +T+ I G+++ARVH+V+P+ + Sbjct: 80 RFVNLGELFPK-DGL-VSSPQEERARYLYAIEQRLEQTLSQIDGVISARVHVVLPENDNN 137 Query: 165 RKIGARPTASVMIR---AINPSVYKSAEAIRHLVAAAVPNLDMGDVTVL 210 + +ASV I+ +N I+ LVA ++P LD +V+V+ Sbjct: 138 GRPKKPSSASVFIKYRPGLNLDALIP--KIKRLVANSIPGLDYDNVSVV 184 >gnl|CDD|163093 TIGR02974, phageshock_pspF, psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH. Length = 329 Score = 30.0 bits (68), Expect = 1.7 Identities = 22/116 (18%), Positives = 38/116 (32%), Gaps = 24/116 (20%) Query: 263 VAELNMDTQQIREIVYDPDSKVERSIRLSKDAQRSETSQPESAVTVEQNMPHVSDRKVPL 322 V ++ I EI+ DP + S + + + ++P S Sbjct: 230 VYRHGLEEAPIDEIIIDPFA--------SPWRPKQAAPAVDEVNSTPTDLPSPSSIAAAF 281 Query: 323 PRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNKGRLTEVLGRSADQ 378 P L K+ Q +YEI A + N+ + E+LG + Q Sbjct: 282 PLDL-----KQAQQDYEIELLQQALAEAQF-----------NQRKAAELLGLTYHQ 321 >gnl|CDD|180195 PRK05679, PRK05679, pyridoxamine 5'-phosphate oxidase; Provisional. Length = 195 Score = 29.8 bits (68), Expect = 1.8 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%) Query: 511 HSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 SR S+I ++ SKQS R + E +FA++ K+A+ E+ Sbjct: 108 ASRPRGSQIGAWASKQS--RPISSRAALEAKFAEVKAKFAQGEV 149 >gnl|CDD|163083 TIGR02956, TMAO_torS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). Length = 968 Score = 29.4 bits (66), Expect = 2.8 Identities = 31/144 (21%), Positives = 57/144 (39%), Gaps = 17/144 (11%) Query: 174 SVMIRAINPSVYKSAEAIRHLVAAAVPNLDMG------DVTVLDSTGKLLTA-NEMERNI 226 SV+I + S+ E R + +A+P + ++ S L +E +R Sbjct: 20 SVVIGVLGLSLVAKTE--RTVTQSALPAMIEARQLSELSNQIIFSVQLLSNVDDERQRQA 77 Query: 227 LGKSLSIVQAIQHEIEMNINKALAAFLGVDNFRSAVVAELNMDTQQIREIVYDPDSKVER 286 +GK L++ Q E ++ KAL G F ++A L + + I + + V Sbjct: 78 IGKKLTL----QSETLLHSLKAL----GELPFNEDLLARLEVLVKDIIDTLAQLGLSVGE 129 Query: 287 SIRLSKDAQRSETSQPESAVTVEQ 310 I L Q+ E+A + + Sbjct: 130 RITLQAQLQQLSRELSEAAQEISE 153 >gnl|CDD|185224 PRK15324, PRK15324, type III secretion system lipoprotein PrgK; Provisional. Length = 252 Score = 29.2 bits (65), Expect = 2.9 Identities = 33/145 (22%), Positives = 61/145 (42%), Gaps = 11/145 (7%) Query: 55 LEVSDVNRISVALSEANIDFRISDNGS---SISVPSSMVGKARIHLAAQGLPSSSSNSGY 111 L+ N + L NI+ D+G SI+V A + LP Sbjct: 27 LDQEQANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAAVYWIKTYQLPPRPRVEIA 86 Query: 112 ELFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMP-DMGSFRKIGAR 170 ++F +S + ++ A+E + +++Q++ G+++ARVHI D G R Sbjct: 87 QMF-PADSLVSSPRAEKARLYSAIEQRLEQSLQTMEGVLSARVHISYDIDAGE----NGR 141 Query: 171 PTASVMIRAINPSVYKSAEAIRHLV 195 P V + A+ +VY+ + H + Sbjct: 142 PPKPVHLSAL--AVYERGSPLAHQI 164 >gnl|CDD|178530 PLN02942, PLN02942, dihydropyrimidinase. Length = 486 Score = 28.3 bits (63), Expect = 5.2 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%) Query: 194 LVAAAVPNLDMGD-VTVLDSTGKLL 217 ++ A PNL + D V V+D+TGK + Sbjct: 31 IIVAVAPNLKVPDDVRVIDATGKFV 55 >gnl|CDD|180858 PRK07139, PRK07139, amidase; Provisional. Length = 439 Score = 28.1 bits (63), Expect = 6.0 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 7/52 (13%) Query: 64 SVALSEANIDFRI-SDNGSSISVPSSMVGKARIHLAAQGLPSSSSNSGYELF 114 S A NI F I SD G S+ +P+S +GK PS + S Y LF Sbjct: 124 SAATFNKNISFAIGSDTGDSVRLPASFIGKVGFK------PSYGAISRYGLF 169 >gnl|CDD|129649 TIGR00558, pdxH, pyridoxamine-phosphate oxidase. This model is similar to Pyridox_oxidase from PFAM but is designed to find only true pyridoxamine-phosphate oxidase and to ignore the related protein PhzG involved in phenazine biosynthesis. This protein from E. coli was characterized as a homodimer with two FMN per dimer. Length = 217 Score = 27.8 bits (62), Expect = 7.3 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%) Query: 501 LDSSNQDIFSHSRNLQSRINSYVSKQSDLRLLHMIEINEERFAKILRKWARSEI 554 L D + SR SRI ++ S+QS ++ E E + K K+ +EI Sbjct: 120 LPREESDAYFKSRPRGSRIGAWASRQS--DVISNREELESKALKNTEKFEDAEI 171 >gnl|CDD|178381 PLN02784, PLN02784, alpha-amylase. Length = 894 Score = 28.1 bits (62), Expect = 7.3 Identities = 11/31 (35%), Positives = 14/31 (45%) Query: 473 EVGGKSILSPPPISSAVTTGLMPNDNIALDS 503 +G + PPP S G MP D L+S Sbjct: 532 SLGFTVVWLPPPTESVSPEGYMPKDLYNLNS 562 >gnl|CDD|149628 pfam08639, SLD3, DNA replication regulator SLD3. The SLD3 DNA replication regulator is required for loading and maintenance of Cdc45 on chromatin during DNA replication. Length = 468 Score = 27.9 bits (62), Expect = 8.2 Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 7/70 (10%) Query: 282 SKVERSIRLSKDAQRSETSQPESAVTVEQN---MPHVSDRKVPLPRSLENTDKKEEQSNY 338 S+ ++ +K Q+ + +SA E+ ++++K + L+ ++ N Sbjct: 354 SRTSSDLQKNKRLQKRQVDLSDSARQHEEKLKKKQMLNEQK----KELKRAISALKKPNR 409 Query: 339 EINTKSIATT 348 E++ K I T Sbjct: 410 ELSAKDIVET 419 >gnl|CDD|180066 PRK05419, PRK05419, putative sulfite oxidase subunit YedZ; Reviewed. Length = 205 Score = 27.5 bits (62), Expect = 9.3 Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 8/36 (22%) Query: 435 HFATVINALVFLVGTLLVT----FLGLHAL---RRL 463 HF T + ALVFL+ TL VT G L RRL Sbjct: 45 HF-TGLWALVFLLATLAVTPLRRLTGQPLLIRTRRL 79 >gnl|CDD|148613 pfam07105, DUF1367, Protein of unknown function (DUF1367). This family consists of several highly conserved, hypothetical bacterial and phage proteins of around 200 resides in length. The function of this family is unknown. Length = 196 Score = 27.4 bits (61), Expect = 9.9 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%) Query: 401 RRGDTITITSMDFLE-NQLFNSGTVQVSFMDILSRHFAT 438 + +I+ SMD E +L+ + + V + ILSR+F T Sbjct: 144 KEPRSISFASMDETEFQELYKA-VLNVLWNWILSRYFNT 181 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.317 0.131 0.353 Gapped Lambda K H 0.267 0.0736 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 8,830,400 Number of extensions: 574770 Number of successful extensions: 1325 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1306 Number of HSP's successfully gapped: 33 Length of query: 563 Length of database: 5,994,473 Length adjustment: 98 Effective length of query: 465 Effective length of database: 3,876,889 Effective search space: 1802753385 Effective search space used: 1802753385 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 60 (26.9 bits)