RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780695|ref|YP_003065108.1| flagellar MS-ring protein
[Candidatus Liberibacter asiaticus str. psy62]
         (563 letters)



>1yj7_A ESCJ; mixed alpha/beta, extended linker, protein transport;
           1.80A {Escherichia coli} (A:69-171)
          Length = 103

 Score =  102 bits (256), Expect = 1e-22
 Identities = 16/108 (14%), Positives = 44/108 (40%), Gaps = 7/108 (6%)

Query: 113 LFDKVNSFGLTSFMQEITRVRALEGEIARTIQSISGIVAARVHIVMPDMGSFRKIGARPT 172
           +F   +    +   +        E +I R +  I G++   V + + +           +
Sbjct: 2   IFPP-SQLVASPSQENAKINYLKEQDIERLLSKIPGVIDCSVSLNVNN-----NESQPSS 55

Query: 173 ASVMIRAINP-SVYKSAEAIRHLVAAAVPNLDMGDVTVLDSTGKLLTA 219
           A+V++ +    ++  S   I++LV  +V +L + +++V+  +      
Sbjct: 56  AAVLVISSPEVNLAPSVIQIKNLVKNSVDDLKLENISVVIKSSSGQDG 103


>1yj7_A ESCJ; mixed alpha/beta, extended linker, protein transport;
           1.80A {Escherichia coli} (A:1-68)
          Length = 68

 Score = 31.2 bits (71), Expect = 0.33
 Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 3/60 (5%)

Query: 50  NLYVKLEVSDVNRISVALSEANIDF---RISDNGSSISVPSSMVGKARIHLAAQGLPSSS 106
            LY  L   + N++   L   +++           ++SV ++   +A   L   G P   
Sbjct: 4   QLYTGLTEKEANQMQALLLSNDVNVSKEMDKSGNMTLSVAAADFVRAITILNNNGFPKKK 63


>3l84_A Transketolase; TKT, structural genomics, center for
           structural genomics of infectious diseases, csgid,
           transferase; HET: MSE; 1.36A {Campylobacter jejuni}
           (A:508-632)
          Length = 125

 Score = 26.8 bits (59), Expect = 7.3
 Identities = 9/89 (10%), Positives = 22/89 (24%), Gaps = 5/89 (5%)

Query: 194 LVAAAVPNLDMGDVTVLDSTGKLLTANEMERNILGKSLSIVQAIQHEIEMNINKALAAFL 253
           L +A           V+      L   + +          V  ++      + K      
Sbjct: 34  LESANELEKQGFACNVVSXPCFELFEKQDKAYQERLLKGEVIGVEAAHSNELYKFCHKVY 93

Query: 254 GVDNF-----RSAVVAELNMDTQQIREIV 277
           G+++F        V         ++   +
Sbjct: 94  GIESFGESGKDKDVFERFGFSVSKLVNFI 122


>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase;
           alpha-beta protein, structural genomics, PSI-2, protein
           structure initiative; 2.30A {Bacillus halodurans} PDB:
           2qgn_A (A:1-200,A:283-322)
          Length = 240

 Score = 26.7 bits (58), Expect = 8.1
 Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 239 HEIEMNINKALAAFLGVDNFRSAVVA-ELNMDTQQIREIVYDPDSKVERSIRL 290
           H+    I+   AA +  +N+R  + A E+   T +        + +      L
Sbjct: 140 HDKLSKIDPKAAAAIHPNNYRRVIRALEIIKLTGKTVTEQARHEEETPSPYNL 192


>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin,
           cleavage on PAIR of basic residues, complement alternate
           pathway, complement pathway; HET: NAG; 3.10A {Homo
           sapiens} PDB: 3kls_A* 3km9_A* 1xwe_A (A:226-349)
          Length = 124

 Score = 26.4 bits (58), Expect = 10.0
 Identities = 11/68 (16%), Positives = 25/68 (36%)

Query: 306 VTVEQNMPHVSDRKVPLPRSLENTDKKEEQSNYEINTKSIATTHDNYKLERLSIAVVVNK 365
           +T         D+K  +  +++NT      +    ++++       Y LE L+   +   
Sbjct: 42  ITFGIREDLKDDQKEMMQTAMQNTMLINGIAQVTFDSETAVKELSYYSLEDLNNKYLYIA 101

Query: 366 GRLTEVLG 373
             + E  G
Sbjct: 102 VTVIESTG 109


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.317    0.131    0.353 

Gapped
Lambda     K      H
   0.267   0.0599    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 3,835,257
Number of extensions: 164741
Number of successful extensions: 434
Number of sequences better than 10.0: 1
Number of HSP's gapped: 432
Number of HSP's successfully gapped: 9
Length of query: 563
Length of database: 4,956,049
Length adjustment: 93
Effective length of query: 470
Effective length of database: 1,812,184
Effective search space: 851726480
Effective search space used: 851726480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.0 bits)