HHsearch alignment for GI: 254780696 and conserved domain: COG1181
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane].
Probab=99.35 E-value=5.7e-11 Score=92.28 Aligned_cols=235 Identities=17% Similarity=0.243 Sum_probs=149.9
Q ss_pred CCEEEECCCCCCCHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEECCHHHHHHCCCHHHHHHHHH----HCCCC-E
Q ss_conf 412650464435210063668832886224799999999862358504117488752565034334543----04431-0
Q gi|254780696|r 67 EQYYSLGEEKIIDLSQMDVILIRQDPPFNMHYITSTYLLEKINPETLIVNNPFWIRNSPEKIFVTEFSE----LMPPT-L 141 (316)
Q Consensus 67 ~~~f~~~~~~~~~L~~fD~i~iR~dPp~d~~yi~~~~~Le~~~~~~~viN~p~~i~~~~eKl~~~~~~~----~~P~T-~ 141 (316)
T Consensus 46 ~~~~~~~~~~~~~~~~~~vvfp~lhG~~gEDg~iq-g~le~~-giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~~ 123 (317)
T COG1181 46 GLWMLDKEVTKRVLQKADVVFPVLHGPYGEDGTIQ-GLLELL-GIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVA 123 (317)
T ss_pred CEEEECCCHHHHHHCCCCEEEEECCCCCCCCCHHH-HHHHHH-CCCEEECCHHHHHHCCCHHHHHHHHHHCCCCCCHHHH
T ss_conf 32785031012220269877871558888870699-999970-9987607644533235099998899867865123567
Q ss_pred EECC---HHHHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEEC
Q ss_conf 0037---245568888521-433111688543446874488711588999998400133400210534456826999989
Q gi|254780696|r 142 ISRD---ITQITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLN 217 (316)
Q Consensus 142 vt~~---~~~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~ 217 (316)
T Consensus 124 ~~~~~~~~~~~e~~~~~l~~p~~Vkp~~~gSSvg~~~v~~-~~d~~~~~e~a~-~~d~~vl~e~~~~---~rei~v~vl~ 198 (317)
T COG1181 124 LTRDEYSSVIVEEVEEGLGFPLFVKPAREGSSVGRSPVNV-EGDLQSALELAF-KYDRDVLREQGIT---GREIEVGVLG 198 (317)
T ss_pred HHCCCCHHHHHHHHHCCCCCCEEEECCCCEEEEEEEECCE-ECCHHHHHHHHH-HHCCCCEECCCCC---CCEEEEEECC
T ss_conf 5334520478887741468878998587311367998835-043699999999-8478512003776---6558986358
Q ss_pred CEE--EE-EEEEECCC-CCC----CCCCCCCCC-EEE-EECCHHH----HHHHHHHHHHHHHCC-CEEEEEEEE--C---
Q ss_conf 988--63-21220456-860----000001473-111-0077899----999999999999849-879999511--7---
Q gi|254780696|r 218 GKP--VG-AVNRIPSE-VDN----RSNIHAGGK-AEL-TKLTKID----LDICKRIGESLRERG-LFFTGIDVI--G--- 277 (316)
Q Consensus 218 g~~--v~-a~~R~~~~-~~~----r~Nl~~Gg~-~~~-~~lt~~~----~~i~~~~~~~L~~~g-l~~~GiDii--g--- 277 (316)
T Consensus 199 ~~~~~~~l~~~eI~~~~~~fydye~Ky~~~gg~~~~~pa~lt~~~~~~i~~lA~~a~~al---g~~g~~rvDf~~~~~~g 275 (317)
T COG1181 199 NDYEEQALPLGEIPPKGEEFYDYEAKYLSTGGAQYDIPAGLTDEIHEEIKELALRAYKAL---GCLGLARVDFFVDDDEG 275 (317)
T ss_pred CCCCCEECCCCEEECCCCEEEEEECCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHC---CCCCEEEEEEEEECCCC
T ss_conf 865524447616816998698600014578984353788999889999999999999860---88875888799987899
Q ss_pred C-EEEEEECCCCH-----HHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 8-78898368830-----37889975199989999999988
Q gi|254780696|r 278 D-YITEINVTSPT-----CIREIHRNGGENVASLFWDGIEK 312 (316)
Q Consensus 278 ~-~i~EvNvtsP~-----g~~~~~~~~~~~i~~~i~d~ie~ 312 (316)
T Consensus 276 ~~~l~EvN-t~PG~t~~sl~P~~~~~~gi~~~~L~~~~~e~ 315 (317)
T COG1181 276 EFVLLEVN-TNPGMTAMSLFPKAAAAAGISFAILVLRFVEL 315 (317)
T ss_pred CEEEEEEE-CCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHH
T ss_conf 89999870-89987653537677987599889999999860