HHsearch alignment for GI: 254780696 and conserved domain: PRK01966
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed.
Probab=99.59 E-value=7.7e-12 Score=98.00 Aligned_cols=296 Identities=16% Similarity=0.206 Sum_probs=168.3
Q ss_pred CCCCCEEEEEECCHHHCCCCCCCH----HHHHHHHHHCCCEEEEEEH--HHEEEEC-CEE--EEEEEEEEEEC--CCCCE
Q ss_conf 965331899709988848476467----9999999988988999954--1248999-899--99999999807--77412
Q gi|254780696|r 1 MKKIRNIAIQMNHISTVKVKEDST----FAIALEAQVRGYQIFHYTP--DQLYMRD-SKI--YANTQPLSLDE--KKEQY 69 (316)
Q Consensus 1 mkk~~kI~fimDpi~~i~~~~DTT----~~Lm~eAq~RGheV~~~~~--~dL~~~~-g~v--~A~~~~i~i~~--~~~~~ 69 (316)
T Consensus 1 M~k-~kI~Vl~G---G~S~EreVSl~Sg~~v~~~L~~~~y~v~~i~i~~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (344)
T PRK01966 1 MMK-IRVALLFG---GRSAEHEVSLVSAKNILKALDKDKFEVIPIGIDKDGRWYLIDGSNMELNSDDPLRIEEKKSAELL 76 (344)
T ss_pred CCC-CEEEEEEC---CCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEECCCCHHHCCCCCCCCCCCCCCCCCC
T ss_conf 997-68999958---78821899999999999976150885999998379887725641111024542101234443222
Q ss_pred EE-ECCCCCCCHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCC-EEECCHHHHHHCCCHHHHHHHHH----HCCCCEEE
Q ss_conf 65-04644352100636688328862247999999998623585-04117488752565034334543----04431000
Q gi|254780696|r 70 YS-LGEEKIIDLSQMDVILIRQDPPFNMHYITSTYLLEKINPET-LIVNNPFWIRNSPEKIFVTEFSE----LMPPTLIS 143 (316)
Q Consensus 70 f~-~~~~~~~~L~~fD~i~iR~dPp~d~~yi~~~~~Le~~~~~~-~viN~p~~i~~~~eKl~~~~~~~----~~P~T~vt 143 (316)
T Consensus 77 ~~~~~~~~~~~~~~~D~vf~alHG~~GEDG~iQ-glLe~l--~IPYtGs~~~asal~mDK~~tK~i~~~~gI~tp~~~~~ 153 (344)
T PRK01966 77 LALPGFYEGQLIIEVDVVFPVLHGPPGEDGTIQ-GLLELL--NIPYVGCGVLASAVSMDKILTKRLLAAAGIPQAPYVVL 153 (344)
T ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHH-HHHHHC--CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 345532210003567899990689997670999-999975--99936884899998766999999999879998983998
Q ss_pred CCHH---HHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEEC--
Q ss_conf 3724---5568888521-433111688543446874488711588999998400133400210534456826999989--
Q gi|254780696|r 144 RDIT---QITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLN-- 217 (316)
Q Consensus 144 ~~~~---~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~-- 217 (316)
T Consensus 154 ~~~~~~~~~~~~~~~l~~P~iVKP~~~GSSiGvs~v~~-~~el~~ai~~a~~-~~~~vlvEefI~---GrE~tv~vl~~~ 228 (344)
T PRK01966 154 TRSRREEAIAEVEEKLGLPVFVKPANLGSSVGISKVKN-EEELEAALDLAFE-YDRKVLVEQGIK---GREIECAVLGYN 228 (344)
T ss_pred ECCCCHHHHHHHHHHCCCCEEEECCCCCCCCCEEEECC-HHHHHHHHHHHHH-CCCCCEEECCCC---CEEEEEEEECCC
T ss_conf 16662345899998618987993289963432599689-9999999999986-397505751244---489999997489
Q ss_pred CEEEE-EEEEECCCCCC---CCCCCCCCCE---EEEECCHHH----HHHHHHHHHHHHHCCCE-EEEEEEE----C-CEE
Q ss_conf 98863-21220456860---0000014731---110077899----99999999999984987-9999511----7-878
Q gi|254780696|r 218 GKPVG-AVNRIPSEVDN---RSNIHAGGKA---ELTKLTKID----LDICKRIGESLRERGLF-FTGIDVI----G-DYI 280 (316)
Q Consensus 218 g~~v~-a~~R~~~~~~~---r~Nl~~Gg~~---~~~~lt~~~----~~i~~~~~~~L~~~gl~-~~GiDii----g-~~i 280 (316)
T Consensus 229 ~~~~~l~~~Ei~~~~~fydy~~KY~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~~l---g~rg~~RiDf~~d~~g~~y~ 305 (344)
T PRK01966 229 DEPVASVPGEIVKDNDFYDYEAKYIDDSGATLVIPADLSEELTEQIRELAIKAFKAL---GCSGLARVDFFLTEDGEIYL 305 (344)
T ss_pred CCEEEECCEEECCCCCCCCHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHH---CCCCEEEEEEEEECCCCEEE
T ss_conf 946773115871798751488810468971696678899999999999999999981---99727989899908998899
Q ss_pred EEEECCCCH-----HHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 898368830-----37889975199989999999988
Q gi|254780696|r 281 TEINVTSPT-----CIREIHRNGGENVASLFWDGIEK 312 (316)
Q Consensus 281 ~EvNvtsP~-----g~~~~~~~~~~~i~~~i~d~ie~ 312 (316)
T Consensus 306 lEvN-t~PGmT~~Sl~p~~a~~~G~s~~~li~~ii~~ 341 (344)
T PRK01966 306 NEIN-TLPGFTPISMYPKLWEASGLSYPELIDRLIEL 341 (344)
T ss_pred EEEE-CCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 9820-89998754789999998099999999999999