HHsearch alignment for GI: 254780696 and conserved domain: PRK12815
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed.
Probab=98.54 E-value=2.2e-05 Score=55.69 Aligned_cols=281 Identities=17% Similarity=0.232 Sum_probs=166.1
Q ss_pred CCEEEEEECCHHHCCCC---CCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCH
Q ss_conf 33189970998884847---646799999999889889999541248999899999999998077741265046443521
Q gi|254780696|r 4 IRNIAIQMNHISTVKVK---EDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDL 80 (316)
Q Consensus 4 ~~kI~fimDpi~~i~~~---~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L 80 (316)
T Consensus 7 ikkvLiiGsGpi~IGqa~EfDysg~qA~~aLkeeG~~vvlvN~NPaTi~TD~~~ad~vY~e--Plt~e~v----~~Ii~~ 80 (1068)
T PRK12815 7 IKKILVIGSGPIIIGQAAEFDYSGTQACKALKEEGYQVVLVNPNPATIMTDPEPADTVYFE--PLTLEFV----KRIIRR 80 (1068)
T ss_pred CCEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHCCCCCCCEEEEC--CCCHHHH----HHHHHH
T ss_conf 8889998988153123446565699999999986998999889832620898744437885--8989999----999997
Q ss_pred HHCCEEEEECCCCCCHHHHHHHHHHHHH---CC-CCEE-ECCHHHHHHCCCH-HHHH---HHHHHCCCCEEECCHHHHHH
Q ss_conf 0063668832886224799999999862---35-8504-1174887525650-3433---45430443100037245568
Q gi|254780696|r 81 SQMDVILIRQDPPFNMHYITSTYLLEKI---NP-ETLI-VNNPFWIRNSPEK-IFVT---EFSELMPPTLISRDITQITR 151 (316)
Q Consensus 81 ~~fD~i~iR~dPp~d~~yi~~~~~Le~~---~~-~~~v-iN~p~~i~~~~eK-l~~~---~~~~~~P~T~vt~~~~~~~~ 151 (316)
T Consensus 81 E~Pd~il~~~G---GqtaLnla~~L~~~GiL~k~~v~llGt~~~~I~~aedR~~f~~~m~~ig~~~~~s~~~~s~~ea~~ 157 (1068)
T PRK12815 81 EKPDALLATLG---GQTALNLAVKLLEAGILEQYGVELLGTNVEAIQKGEDRERFRALMKELGEPVPESEIVDSEEEALR 157 (1068)
T ss_pred HCCCEEEECCC---CHHHHHHHHHHHHCCCHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCHHCCCHHHHHH
T ss_conf 49998986777---847999999999759778659649679999998645999999999976999997052199999999
Q ss_pred HHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHC-CCCCCEEECCCCCCCCCEEEEEE---CC-E-EEEEE
Q ss_conf 888521-433111688543446874488711588999998400-13340021053445682699998---99-8-86321
Q gi|254780696|r 152 FYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKY-PEPLMIQSYLPQIRDGDKRILLL---NG-K-PVGAV 224 (316)
Q Consensus 152 f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~-~~~ii~Qefi~~~~~gD~Rv~vi---~g-~-~v~a~ 224 (316)
T Consensus 158 ~a~~ig~PvivRps~~lGg~g~~i~-~n~~eL~~~~~~~~~~S~~~~vlie~sl~gwkE--ie~ev~RD~~~n~i~vc~m 234 (1068)
T PRK12815 158 FAEKIGFPIIVRPAYTLGGDGGGIA-ENEEELEQLARQGLQASPIHQCLLEESIAGWKE--IEYEVMRDRNDNCVTVCNM 234 (1068)
T ss_pred HHHHCCCCEEEEECCCCCCCCCEEE-CCHHHHHHHHHHHHHHCCCCCEEEEHHCCCCEE--EEEEEEEECCCCEEEEEEC
T ss_conf 9986699899983610668965044-599999999999996399985786501179769--9999999889897998541
Q ss_pred EEECCCCCCCCCCCCCCCEE---EEECCHHHHH----HHHHHHHHHHHCCCEEEEEEE---E---C--CEEEEEECCCCH
Q ss_conf 22045686000000147311---1007789999----999999999984987999951---1---7--878898368830
Q gi|254780696|r 225 NRIPSEVDNRSNIHAGGKAE---LTKLTKIDLD----ICKRIGESLRERGLFFTGIDV---I---G--DYITEINVTSPT 289 (316)
Q Consensus 225 ~R~~~~~~~r~Nl~~Gg~~~---~~~lt~~~~~----i~~~~~~~L~~~gl~~~GiDi---i---g--~~i~EvNvtsP~ 289 (316)
T Consensus 235 EnidP-----~GIHTGDSi~vaP~qTL~d~e~q~lR~~a~~I~~~l---gv-~G~~NiQFAv~p~~~~~~VIEvN---PR 302 (1068)
T PRK12815 235 ENIDP-----VGVHTGDSIVVAPSQTLTDDEYQMLRSASLKIIRAL---GV-VGGCNIQFALDPRSKQYYVIEVN---PR 302 (1068)
T ss_pred CCCCC-----CCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHC---CE-ECCEEEEEEECCCCCCEEEEECC---CC
T ss_conf 23544-----543567745345781269999999999999999972---80-10105799886999828999647---86
Q ss_pred HHH---HHHHHCCCCHHHHHHH
Q ss_conf 378---8997519998999999
Q gi|254780696|r 290 CIR---EIHRNGGENVASLFWD 308 (316)
Q Consensus 290 g~~---~~~~~~~~~i~~~i~d 308 (316)
T Consensus 303 ~SRssalaSKATGyPiAkvaak 324 (1068)
T PRK12815 303 VSRSSALASKATGYPIAKIAAK 324 (1068)
T ss_pred CCCHHHHHHHHCCCCHHHHHHH
T ss_conf 2202478887508848999999