>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase; InterPro: IPR004549 This family represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase (6.4.1.2 from EC) is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase (6.3.4.14 from EC), and two subunits of carboxyl transferase in a 2:2 complex. In the first step of long-chain fatty acid synthesis, biotin carboxylase catalyses the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-coA. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase). In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.; GO: 0016874 ligase activity.

Probab=96.74 E-value=0.0031 Score=41.63 Aligned_cols=181 Identities=23% Similarity=0.312 Sum_probs=113.3 Q ss_pred HHHHCC-CC-EEECCHHHHHHCCCHHHHHHHHH-----HCCCC-E-EECCHHHHHHHHHHHH-HHHHHCCCCCCCCCEEE Q ss_conf 986235-85-04117488752565034334543-----04431-0-0037245568888521-43311168854344687 Q gi|254780696|r 105 LEKINP-ET-LIVNNPFWIRNSPEKIFVTEFSE-----LMPPT-L-ISRDITQITRFYLEMK-DIIIKPLYGNGGTGVFR 174 (316) Q Consensus 105 Le~~~~-~~-~viN~p~~i~~~~eKl~~~~~~~-----~~P~T-~-vt~~~~~~~~f~~~~~-~vViKPl~g~~G~gV~~ 174 (316) T Consensus 92 Ae~c~~~g~~FIGP~pe~Ir~MGDK~~A~~~mKkaGVP~VPGS~GP~~~~~~e~~~~A~~IGyPv~IKA~AGGGGRGmR~ 171 (451) T TIGR00514 92 AEICEDHGITFIGPSPEAIRLMGDKVTAKETMKKAGVPVVPGSDGPLVEDEEEAVRIAKEIGYPVIIKATAGGGGRGMRV 171 (451) T ss_pred HHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCEEEE T ss_conf 88987388266678712011268868999999748876623888863102788999997478968999625899722588 Q ss_pred ECCCCCCHHHHH-----HHHHHHCCCCCCEEECCCCCCCCCEEEEEECC---EEE------EEEEEECCCCCCCCCCCCC Q ss_conf 448871158899-----99984001334002105344568269999899---886------3212204568600000014 Q gi|254780696|r 175 ITLGDRNFSSLI-----EMLFEKYPEPLMIQSYLPQIRDGDKRILLLNG---KPV------GAVNRIPSEVDNRSNIHAG 240 (316) Q Consensus 175 i~~~~~~~~~~~-----e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~g---~~v------~a~~R~~~~~~~r~Nl~~G 240 (316) T Consensus 172 vR~~~-El~~~~~~a~~EA~AAF~N~~VYiEKfienPRH--~E~QVLAD~~GN~vyLgERDCSiQRR~QK--ll-----E 241 (451) T TIGR00514 172 VREED-ELVKLIKAARAEAAAAFNNDGVYIEKFIENPRH--VEIQVLADKYGNVVYLGERDCSIQRRNQK--LL-----E 241 (451) T ss_pred ECCHH-HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCE--EEEEEEECCCCCEEEECCCCCCHHCCCCC--EE-----E T ss_conf 62868-999999999999974028796278633369940--79998751788878971214620004654--46-----5 Q ss_pred CCEEEEECCHHHHH----HHHHHHHHHHHCCCEEEE---EEEE----CC--EEEEEECCCCHHHH-H---HHHHCCCCHH Q ss_conf 73111007789999----999999999984987999---9511----78--78898368830378-8---9975199989 Q gi|254780696|r 241 GKAELTKLTKIDLD----ICKRIGESLRERGLFFTG---IDVI----GD--YITEINVTSPTCIR-E---IHRNGGENVA 303 (316) Q Consensus 241 g~~~~~~lt~~~~~----i~~~~~~~L~~~gl~~~G---iDii----g~--~i~EvNvtsP~g~~-~---~~~~~~~~i~ 303 (316) T Consensus 242 EaPsP-~Lt~ElR~~~G~~Av~aA~~i---G--Y~GaGTvEFLld~~~~rFYFmEMN-TR---IQVEHPVTEmvtGvDL~ 311 (451) T TIGR00514 242 EAPSP-ALTSELREKMGDAAVKAAKSI---G--YTGAGTVEFLLDKNGQRFYFMEMN-TR---IQVEHPVTEMVTGVDLI 311 (451) T ss_pred ECCCC-CCCHHHHHHHHHHHHHHHHHC---C--CEECCEEEEEEECCCCEEEEEEEC-CE---EEEEECCEEEEECHHHH T ss_conf 46888-778899999989999999864---9--800351688862588735776517-60---21110320146002578 Q ss_pred HH Q ss_conf 99 Q gi|254780696|r 304 SL 305 (316) Q Consensus 304 ~~ 305 (316) T Consensus 312 ke 313 (451) T TIGR00514 312 KE 313 (451) T ss_pred HH T ss_conf 88

HHsearch alignment for GI: 254780696 and conserved domain: TIGR00514