HHsearch alignment for GI: 254780696 and conserved domain: TIGR00768
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family; InterPro: IPR004666 Escherichia coli RimK adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6. Mutation of the Glu-Glu terminus to Lys-Glu blocked addition. S6 has the C-terminal sequence Glu-Glu in few species, suggesting the homolog of rimK may have a function other than S6 modification in those species. However, most species having a member of this protein subfamily do not have an S6 homolog ending in Glu-Glu.; GO: 0006464 protein modification process.
Probab=100.00 E-value=0 Score=372.46 Aligned_cols=287 Identities=22% Similarity=0.335 Sum_probs=241.2
Q ss_pred EEEEEECC-HHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEE-CCCCCCCHHHC
Q ss_conf 18997099-88848476467999999998898899995412489998999999999980777412650-46443521006
Q gi|254780696|r 6 NIAIQMNH-ISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSL-GEEKIIDLSQM 83 (316)
Q Consensus 6 kI~fimDp-i~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~-~~~~~~~L~~f 83 (316)
T Consensus 1 kl~~l~~~~~~~~~~r~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~P~~~--~I--------~~~~~~~~~~~~~~~~ 70 (321)
T TIGR00768 1 KLAILYDIAIREIYIRLYDEKMLKEAAEERGIDYKVVTPPEIVLTFNQPAAF--SI--------FYKEPRKNKELALAEL 70 (321)
T ss_pred CCEEEEEHHHCCCCCCHHHHHHHHHHHHHHCCCEEEECCHHHEECCCCCCCC--EE--------ECCCCCCCCHHHHCCC
T ss_conf 9247740420632278789999999999717953676041220036888510--01--------1145410010231178
Q ss_pred CEEEEEC-CCCCCH-HHHHHHHHHHHHCCCCEEECCHHHHHHCCCHHHHHHHHH----HCCCCEEEC--------CHHHH
Q ss_conf 3668832-886224-799999999862358504117488752565034334543----044310003--------72455
Q gi|254780696|r 84 DVILIRQ-DPPFNM-HYITSTYLLEKINPETLIVNNPFWIRNSPEKIFVTEFSE----LMPPTLISR--------DITQI 149 (316)
Q Consensus 84 D~i~iR~-dPp~d~-~yi~~~~~Le~~~~~~~viN~p~~i~~~~eKl~~~~~~~----~~P~T~vt~--------~~~~~ 149 (316)
T Consensus 71 d~~~~R~~TPWv~~~~~~~~~r~lE~~--G~~~~N~s~aI~~a~dK~~s~~~L~~~G~P~P~~~~~~PqnfDReW~~~~a 148 (321)
T TIGR00768 71 DVVIVRIGTPWVSSFRGLAVLRALESL--GVPVINSSQAILNAGDKVLSHQLLAKAGVPLPRTGVAGPQNFDREWSPEEA 148 (321)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHC--CCEECCCHHHHHHCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHH
T ss_conf 889983899751102688999999858--963107069986214658999999958689873357366322435898899
Q ss_pred HHHHHHHH----HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHC---CCCCCEEECCC--CCCCCCEEEEEECCEE
Q ss_conf 68888521----433111688543446874488711588999998400---13340021053--4456826999989988
Q gi|254780696|r 150 TRFYLEMK----DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKY---PEPLMIQSYLP--QIRDGDKRILLLNGKP 220 (316)
Q Consensus 150 ~~f~~~~~----~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~---~~~ii~Qefi~--~~~~gD~Rv~vi~g~~ 220 (316)
T Consensus 149 ~~~ie~~g~lEfP~V~Kp~~GS~G~~V~l~~D-~~~~~~~~e~~~~~~~~~~~~~~~QeyI~Pv~~~grDIR~fVvGd~v 227 (321)
T TIGR00768 149 LKLIEEIGQLEFPVVLKPVFGSWGRLVSLARD-KQAAETLLEHFEQLNGPQYKVFLVQEYIKPVKPGGRDIRVFVVGDEV 227 (321)
T ss_pred HHHHHHHCCCCCCEEEECCCCCCCCEEEEEEC-HHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCEEEEEEECCCE
T ss_conf 99998731764245871785635426898506-78999999999721883323578872011325789318999988920
Q ss_pred EEEEEEECCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEE---C-----CE-EEEEECCCCHHH
Q ss_conf 63212204568600000014731110077899999999999999849879999511---7-----87-889836883037
Q gi|254780696|r 221 VGAVNRIPSEVDNRSNIHAGGKAELTKLTKIDLDICKRIGESLRERGLFFTGIDVI---G-----DY-ITEINVTSPTCI 291 (316)
Q Consensus 221 v~a~~R~~~~~~~r~Nl~~Gg~~~~~~lt~~~~~i~~~~~~~L~~~gl~~~GiDii---g-----~~-i~EvNvtsP~g~ 291 (316)
T Consensus 228 ~aA~~R~~~~~~w~~N~a~GG~a~~~~l~~e~~~LA~ka~~a~---g~~v~giDlle~~~r~dw~GL~V~EVN~-~~-~f 302 (321)
T TIGR00768 228 VAAIYRIITSGHWRTNLARGGKAEPCSLTEEIEELAIKAAKAL---GLDVAGIDLLESKDRDDWGGLLVLEVNA-NP-EF 302 (321)
T ss_pred EEEEEECCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH---CCCEEEEEEEECCCCCCCCCCEEEEECC-CC-CC
T ss_conf 1333541788302435543882124525889999999999997---6834899776626854257837999849-97-70
Q ss_pred HHHHHHCCCCHHHHHHHHH
Q ss_conf 8899751999899999999
Q gi|254780696|r 292 REIHRNGGENVASLFWDGI 310 (316)
Q Consensus 292 ~~~~~~~~~~i~~~i~d~i 310 (316)
T Consensus 303 ~~~~~~tgvniA~~l~~yi 321 (321)
T TIGR00768 303 KNSVKTTGVNIAGKLLDYI 321 (321)
T ss_pred CCCEEECCCCHHHHHHHHC
T ss_conf 0111111677689999719