HHsearch alignment for GI: 254780696 and conserved domain: TIGR02068
>TIGR02068 cya_phycin_syn cyanophycin synthetase; InterPro: IPR011810 Cyanophycin is an insoluble storage polymer for carbon, nitrogen, and energy, found in most Cyanobacteria. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine. The polymer is made by this enzyme, cyanophycin synthetase, and degraded by cyanophycinase. Heterologously expressed cyanophycin synthetase in Escherichia coli produces a closely related, water-soluble polymer with some Arg replaced by Lys. It is unclear whether enzymes that produce soluble cyanophycin-like polymers in vivo in non-Cyanobacterial species should be designated as cyanophycin synthetase itself or as a related enzyme. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions .; GO: 0005524 ATP binding, 0016874 ligase activity, 0009059 macromolecule biosynthetic process.
Probab=99.85 E-value=1.5e-20 Score=155.15 Aligned_cols=181 Identities=24% Similarity=0.407 Sum_probs=141.5
Q ss_pred HHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHHHHHHHH--HHHHHCCCCCCCCCEEEECCC-CCCHHHHHHHHHHH
Q ss_conf 8752565034334543----0443100037245568888521--433111688543446874488-71158899999840
Q gi|254780696|r 120 WIRNSPEKIFVTEFSE----LMPPTLISRDITQITRFYLEMK--DIIIKPLYGNGGTGVFRITLG-DRNFSSLIEMLFEK 192 (316)
Q Consensus 120 ~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~~~~--~vViKPl~g~~G~gV~~i~~~-~~~~~~~~e~~~~~ 192 (316)
T Consensus 212 av~iA~DK~lTK~iL~~~GvPVP~G~~~~~~~~a~~aa~~~GG~PvViKP~DGn~GrGv~-~ni~~r~e~e~AY~~A~~- 289 (876)
T TIGR02068 212 AVEIACDKDLTKKILKAAGVPVPEGTVVQSAEEAWEAAEDLGGYPVVIKPYDGNHGRGVT-INIETRDEIESAYEAAKE- 289 (876)
T ss_pred EHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEE-ECCCCHHHHHHHHHHHHH-
T ss_conf 012223637899999847898888736677899999999718996899517799874378-407774889999999986-
Q ss_pred CC--CCCCEEECCCCCCCCCEEEEEECCEEEEEEEEECCC--CC--C---------------------------------
Q ss_conf 01--334002105344568269999899886321220456--86--0---------------------------------
Q gi|254780696|r 193 YP--EPLMIQSYLPQIRDGDKRILLLNGKPVGAVNRIPSE--VD--N--------------------------------- 233 (316)
Q Consensus 193 ~~--~~ii~Qefi~~~~~gD~Rv~vi~g~~v~a~~R~~~~--~~--~--------------------------------- 233 (316)
T Consensus 290 ~Sk~~~ViVEr~i---~G~dhRlLVVg~k~VAvA~R~PA~ViGDG~hTi~eLiG~~~N~DP~RG~Gh~~~Ltki~~D~~~ 366 (876)
T TIGR02068 290 ESKTSEVIVERYI---KGRDHRLLVVGGKLVAVAERVPAHVIGDGVHTIEELIGEQINKDPLRGDGHDKPLTKIRLDSVA 366 (876)
T ss_pred CCCCCEEEEEEEE---CCCCEEEEEECCEEEEEECCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHH
T ss_conf 0786606898764---2762389999896899861888868838720076640576467778888667788834330799
Q ss_pred -------------------------CCCCCCCCCEEEE--ECCHHHHHHHHHHHHHHHHCCCEEEEEEEE----------
Q ss_conf -------------------------0000014731110--077899999999999999849879999511----------
Q gi|254780696|r 234 -------------------------RSNIHAGGKAELT--KLTKIDLDICKRIGESLRERGLFFTGIDVI---------- 276 (316)
Q Consensus 234 -------------------------r~Nl~~Gg~~~~~--~lt~~~~~i~~~~~~~L~~~gl~~~GiDii---------- 276 (316)
T Consensus 367 ~~~L~kqG~~ldsVp~kG~~V~Lr~~ANLSTGG~A~DrTDeiHP~~~~~a~~aAk~i---GLDiaG~D~v~~di~~PL~~ 443 (876)
T TIGR02068 367 KLVLAKQGLTLDSVPAKGRIVYLRATANLSTGGVAIDRTDEIHPENIAIAVRAAKII---GLDIAGVDVVTEDISKPLRD 443 (876)
T ss_pred HHHHHHCCCCCCCHHHCCCEEEEECCCCCCCCCEEEECCCCCCHHHHHHHHHHHHEE---EEEECCEEECCCCCCCCHHH
T ss_conf 999985497511545409788863247744587316225753845899998752000---00121222003100037454
Q ss_pred -CCEEEEEECCCCHHHHH-HH--HHCCCCHHHHHHHHH
Q ss_conf -78788983688303788-99--751999899999999
Q gi|254780696|r 277 -GDYITEINVTSPTCIRE-IH--RNGGENVASLFWDGI 310 (316)
Q Consensus 277 -g~~i~EvNvtsP~g~~~-~~--~~~~~~i~~~i~d~i 310 (316)
T Consensus 444 ~~G~iVEVNA-aP-GlrMH~~PS~G~pR~Va~Ai~d~L 479 (876)
T TIGR02068 444 TDGAIVEVNA-AP-GLRMHLAPSQGKPRNVAKAIVDML 479 (876)
T ss_pred CCCEEEEEEC-CC-CHHHCCCCCCCCCCCCCHHHHHHC
T ss_conf 5972999856-76-634446777746987102687522