HHsearch alignment for GI: 254780696 and conserved domain: TIGR02144
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX; InterPro: IPR011870 The family of proteins found in this family include the characterised LysX from Thermus thermophilus which is part of a well-organised lysine biosynthesis gene cluster . LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this family contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterised in Escherichia coli, and acts by ATP-dependent condensation of S6 with glutamate residues .; GO: 0003824 catalytic activity, 0005524 ATP binding, 0009085 lysine biosynthetic process.
Probab=100.00 E-value=1.1e-42 Score=300.17 Aligned_cols=255 Identities=25% Similarity=0.336 Sum_probs=211.9
Q ss_pred HHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHHHCCEEEEECCCCCC-HHHHHHHHH
Q ss_conf 9999999889889999541248999899999999998077741265046443521006366883288622-479999999
Q gi|254780696|r 26 AIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQMDVILIRQDPPFN-MHYITSTYL 104 (316)
Q Consensus 26 ~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~~fD~i~iR~dPp~d-~~yi~~~~~ 104 (316)
T Consensus 14 mL~e~l~~lg~~v~~i~~~~~~~~~~------------d----------~~i~~~~~~dv~i~R~---VS~~R~L~~a~~ 68 (289)
T TIGR02144 14 MLLEELEKLGLQVRVIYVPELALPFG------------D----------LGIKELEDLDVAIIRN---VSQSRALYSAFL 68 (289)
T ss_pred HHHHHHHHHCCCCEEEECCCEEECCC------------C----------CCCCHHCCCCEEEECH---HHHHHHHHHHHH
T ss_conf 99999987289732662034022078------------8----------5630003755689830---345679999999
Q ss_pred HHHHCCCCEEECCHHHHHHCCCHHHHHH-HHH---HCCCCEEECCHHHHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCC
Q ss_conf 9862358504117488752565034334-543---0443100037245568888521-4331116885434468744887
Q gi|254780696|r 105 LEKINPETLIVNNPFWIRNSPEKIFVTE-FSE---LMPPTLISRDITQITRFYLEMK-DIIIKPLYGNGGTGVFRITLGD 179 (316)
Q Consensus 105 Le~~~~~~~viN~p~~i~~~~eKl~~~~-~~~---~~P~T~vt~~~~~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~ 179 (316)
T Consensus 69 ~E~~--G~~~iN~~~~i~~cgDK~~T~~~L~~~gvP~P~t~~a~d~~~A~~~~e~lGYPvV~KP~~GSWGRlV~~~~d~~ 146 (289)
T TIGR02144 69 LEAV--GVPTINSSHAIIACGDKIFTTLKLAKAGVPTPRTYIAFDREAALKAAEELGYPVVLKPVIGSWGRLVSKIRDKD 146 (289)
T ss_pred HHHC--CCEEECCHHHHHHHCCHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCHH
T ss_conf 9848--97152775898750461889999996678898358982868999999970898897088884378876403788
Q ss_pred CCHHHHHHH---HHHHCCCCCCEEECCCCCCCCCEEEEEECCEEEEEEEEECCCCCCCCCCCCCCCEEEEECCHHHHHHH
Q ss_conf 115889999---98400133400210534456826999989988632122045686000000147311100778999999
Q gi|254780696|r 180 RNFSSLIEM---LFEKYPEPLMIQSYLPQIRDGDKRILLLNGKPVGAVNRIPSEVDNRSNIHAGGKAELTKLTKIDLDIC 256 (316)
Q Consensus 180 ~~~~~~~e~---~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~g~~v~a~~R~~~~~~~r~Nl~~Gg~~~~~~lt~~~~~i~ 256 (316)
T Consensus 147 -~~~~llEh~e~~~~~~~~~~y~QEfi~KP-gRDIR~fViGd~~~~AIYR~~~P~~W~TNtArGG~A~P~~~~~e~~~La 224 (289)
T TIGR02144 147 -ELESLLEHKEVLGGSQLKLYYVQEFINKP-GRDIRVFVIGDEAIAAIYRYSEPNHWRTNTARGGKAEPCKIDEEVEELA 224 (289)
T ss_pred -HHHHHHHHHHHHCCCCCCEEEEEEEECCC-CCEEEEEEECCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCCHHHHHHH
T ss_conf -98899999998679763337999887188-9608999997973167883388530255630588447887687689999
Q ss_pred HHHHHHHHHCCCEEEEEEEE---------CCE-EEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 99999999849879999511---------787-88983688303788997519998999999998863
Q gi|254780696|r 257 KRIGESLRERGLFFTGIDVI---------GDY-ITEINVTSPTCIREIHRNGGENVASLFWDGIEKIK 314 (316)
Q Consensus 257 ~~~~~~L~~~gl~~~GiDii---------g~~-i~EvNvtsP~g~~~~~~~~~~~i~~~i~d~ie~~~ 314 (316)
T Consensus 225 ~kA~~av---gg~~~~iDi~Es~~rqndW~GlLV~EVN-~~~-EFKN~~rvTGvNva~~l~~yav~~~ 287 (289)
T TIGR02144 225 VKAAEAV---GGEVVGIDIVESKRRQNDWGGLLVNEVN-GVP-EFKNTVRVTGVNVAEKLVEYAVELV 287 (289)
T ss_pred HHHHHHH---CCEEEEEEEEECCCCCCCCCCEEEEEEC-CCC-CCCCCEEECCCCHHHHHHHHHHHHH
T ss_conf 9999997---8827899886433445443786897356-897-7278577747453789999999984