HHsearch alignment for GI: 254780696 and conserved domain: TIGR02712
>TIGR02712 urea_carbox urea carboxylase; InterPro: IPR014084 Members of this family are ATP-dependent urea carboxylases, including characterised members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae (Baker's yeast). The allophanate hydrolase domain of the yeast enzyme is not included in this entry and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from O. sagaranensis was shown to be highly active on acetamide and formamide as well as urea..
Probab=98.17 E-value=2.2e-05 Score=55.72 Aligned_cols=184 Identities=20% Similarity=0.252 Sum_probs=127.3
Q ss_pred HHHCC-CCE-EECCHHHHHHCCCHHHHHHHHH-----HCCCCEEECCHHHHHHHHHHHH-HHHHHCCCCCCCCCEEEECC
Q ss_conf 86235-850-4117488752565034334543-----0443100037245568888521-43311168854344687448
Q gi|254780696|r 106 EKINP-ETL-IVNNPFWIRNSPEKIFVTEFSE-----LMPPTLISRDITQITRFYLEMK-DIIIKPLYGNGGTGVFRITL 177 (316)
Q Consensus 106 e~~~~-~~~-viN~p~~i~~~~eKl~~~~~~~-----~~P~T~vt~~~~~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~ 177 (316)
T Consensus 92 ~~C~~aGI~FvGPtpe~ir~fGLKHtAR~lA~~aGVPL~PGTgLL~sl~eA~~~A~~IGYPVMlKSTAGGGGIGl~~c-~ 170 (1226)
T TIGR02712 92 EACEAAGIVFVGPTPEQIRKFGLKHTARELAEAAGVPLLPGTGLLESLDEALEAAKEIGYPVMLKSTAGGGGIGLQKC-D 170 (1226)
T ss_pred HHHHHCCCEEECCCHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC-C
T ss_conf 899847957877870667443832568999996688988851558779999999864699547987078765245111-8
Q ss_pred CCCCHHHHHHHHHHHCCC-----CCCEEECCCCCCCCCEEEEEEC---CEEE------EEEEEECCCCCCCCCCCCCCCE
Q ss_conf 871158899999840013-----3400210534456826999989---9886------3212204568600000014731
Q gi|254780696|r 178 GDRNFSSLIEMLFEKYPE-----PLMIQSYLPQIRDGDKRILLLN---GKPV------GAVNRIPSEVDNRSNIHAGGKA 243 (316)
Q Consensus 178 ~~~~~~~~~e~~~~~~~~-----~ii~Qefi~~~~~gD~Rv~vi~---g~~v------~a~~R~~~~~~~r~Nl~~Gg~~ 243 (316)
T Consensus 171 ~~~eL~~aFe~Vkrlg~~~F~daGVFlErfv~~ARH--vEVQifGDG~G~v~aLGeRDCSLQRRNQK-----------Vv 237 (1226)
T TIGR02712 171 NAAELAEAFETVKRLGESFFGDAGVFLERFVENARH--VEVQIFGDGKGKVVALGERDCSLQRRNQK-----------VV 237 (1226)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHCCCCE--EEEEEEECCCCCEEEEECCCCCCCCCCCC-----------EE
T ss_conf 989999999998998863236351434032037842--89987526973369971167544445665-----------58
Q ss_pred EEE---ECCHHHHHHHHHHHHHHHHCCCEE--E-EEEEECC------EEEEEECCCCHHHHH---HHHHCCCCHHHHHH
Q ss_conf 110---077899999999999999849879--9-9951178------788983688303788---99751999899999
Q gi|254780696|r 244 ELT---KLTKIDLDICKRIGESLRERGLFF--T-GIDVIGD------YITEINVTSPTCIRE---IHRNGGENVASLFW 307 (316)
Q Consensus 244 ~~~---~lt~~~~~i~~~~~~~L~~~gl~~--~-GiDiig~------~i~EvNvtsP~g~~~---~~~~~~~~i~~~i~ 307 (316)
T Consensus 238 EETPAP~LP~~~R~~L~~AA~~Lg~~-V~YrSAGTVEFiYD~~~d~FYFLEVN-TR--LQVEHPvTE~VtGlDLVEWM~ 312 (1226)
T TIGR02712 238 EETPAPNLPEETRAALLAAAEKLGEA-VNYRSAGTVEFIYDEARDEFYFLEVN-TR--LQVEHPVTEMVTGLDLVEWMV 312 (1226)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHH-HCCCCCCEEEEEECCCCCCEEEEEEC-CC--CCCCCCCEEEEECCHHHHHHH
T ss_conf 72774686489999999999999997-18763760477402210871211323-41--113357301784640898999