Query gi|254780696|ref|YP_003065109.1| glutathione synthetase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 316
No_of_seqs 185 out of 1614
Neff 7.0
Searched_HMMs 39220
Date Sun May 29 20:21:22 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780696.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01380 glut_syn glutathione 100.0 0 0 773.8 23.3 310 5-314 1-322 (322)
2 PRK05246 glutathione synthetas 100.0 0 0 743.4 34.4 312 4-315 1-314 (316)
3 PRK12458 glutathione synthetas 100.0 0 0 694.8 31.4 308 5-315 1-332 (349)
4 COG0189 RimK Glutathione synth 100.0 0 0 474.0 20.5 302 5-315 1-316 (318)
5 PRK10446 ribosomal protein S6 100.0 0 0 444.3 28.1 282 5-316 1-292 (300)
6 pfam02955 GSH-S_ATP Prokaryoti 100.0 0 0 393.8 17.0 176 126-301 1-176 (176)
7 TIGR00768 rimK_fam alpha-L-glu 100.0 0 0 372.5 21.8 287 6-310 1-321 (321)
8 TIGR02144 LysX_arch Lysine bio 100.0 1.1E-42 0 300.2 18.3 255 26-314 14-287 (289)
9 pfam02951 GSH-S_N Prokaryotic 100.0 7.7E-40 2E-44 281.5 14.4 118 5-122 1-119 (119)
10 pfam08443 RimK RimK-like ATP-g 100.0 1.9E-35 4.7E-40 252.8 16.1 180 124-310 1-190 (190)
11 TIGR03103 trio_acet_GNAT GNAT- 99.9 3.6E-22 9.2E-27 165.7 19.8 182 117-311 288-541 (547)
12 TIGR02068 cya_phycin_syn cyano 99.8 1.5E-20 3.7E-25 155.1 11.6 181 120-310 212-479 (876)
13 PRK02471 bifunctional glutamat 99.8 2.5E-19 6.3E-24 147.1 17.7 234 23-310 434-751 (753)
14 PRK01372 ddl D-alanine--D-alan 99.7 6.4E-15 1.6E-19 118.2 21.9 270 2-311 2-298 (304)
15 PRK12767 carbamoyl phosphate s 99.7 2.1E-15 5.2E-20 121.4 18.6 273 4-310 1-291 (325)
16 PRK02186 argininosuccinate lya 99.7 4.7E-14 1.2E-18 112.5 20.5 280 4-309 2-301 (892)
17 PRK07206 hypothetical protein; 99.6 2E-12 5.2E-17 101.8 22.1 283 4-310 1-313 (415)
18 PRK01966 ddl D-alanyl-alanine 99.6 7.7E-12 2E-16 98.0 24.9 296 1-312 1-341 (344)
19 pfam02655 ATP-grasp_3 ATP-gras 99.6 4.8E-14 1.2E-18 112.4 10.4 143 124-284 1-154 (160)
20 PRK06849 hypothetical protein; 99.5 4.9E-13 1.2E-17 105.8 15.1 246 23-287 16-278 (387)
21 TIGR02291 rimK_rel_E_lig alpha 99.5 6.3E-14 1.6E-18 111.7 10.5 172 126-301 37-283 (320)
22 pfam07478 Dala_Dala_lig_C D-al 99.5 6.7E-13 1.7E-17 104.9 15.4 162 136-306 8-196 (201)
23 COG2232 Predicted ATP-dependen 99.5 4.1E-13 1.1E-17 106.3 11.2 262 1-309 8-296 (389)
24 COG1821 Predicted ATP-utilizin 99.4 1.4E-12 3.4E-17 102.9 10.1 198 76-309 67-278 (307)
25 TIGR01205 D_ala_D_alaTIGR D-al 99.4 3.6E-11 9.2E-16 93.6 15.9 285 19-312 15-373 (375)
26 COG1181 DdlA D-alanine-D-alani 99.4 5.7E-11 1.5E-15 92.3 14.2 235 67-312 46-315 (317)
27 pfam01071 GARS_A Phosphoribosy 99.3 6.5E-11 1.7E-15 91.9 13.5 156 126-285 2-186 (193)
28 PRK09288 purT phosphoribosylgl 99.3 1.1E-10 2.9E-15 90.3 12.2 242 5-284 13-282 (395)
29 pfam05770 Ins134_P3_kin Inosit 99.2 6.3E-09 1.6E-13 78.9 18.4 239 3-293 6-293 (307)
30 pfam02786 CPSase_L_D2 Carbamoy 99.2 8E-10 2E-14 84.8 13.5 162 136-309 15-202 (211)
31 PRK08462 biotin carboxylase; V 99.1 3E-08 7.6E-13 74.5 19.1 277 2-308 2-317 (446)
32 COG0439 AccC Biotin carboxylas 99.1 1.2E-07 3.2E-12 70.4 21.0 287 3-310 1-316 (449)
33 PRK07178 acetyl-CoA carboxylas 99.1 8.2E-08 2.1E-12 71.6 19.8 269 20-308 10-312 (471)
34 PRK12833 acetyl-CoA carboxylas 99.1 1.3E-07 3.2E-12 70.4 20.7 281 2-308 3-317 (458)
35 pfam02222 ATP-grasp ATP-grasp 99.1 1.5E-09 3.8E-14 83.0 10.4 135 136-284 7-157 (171)
36 PRK05586 biotin carboxylase; V 99.0 2.9E-07 7.4E-12 68.0 19.1 282 3-308 1-314 (447)
37 PRK06019 phosphoribosylaminoim 99.0 8.9E-09 2.3E-13 77.9 11.1 240 5-284 8-268 (377)
38 PRK06111 acetyl-CoA carboxylas 98.9 1.2E-06 3.1E-11 64.0 19.3 275 3-307 1-313 (449)
39 pfam02750 Synapsin_C Synapsin, 98.9 5.9E-09 1.5E-13 79.1 7.3 178 116-308 1-199 (203)
40 PRK08654 pyruvate carboxylase 98.9 8.5E-07 2.2E-11 64.9 18.2 266 20-308 10-313 (497)
41 PRK08591 acetyl-CoA carboxylas 98.9 1.6E-06 4.1E-11 63.1 19.2 273 3-307 1-312 (449)
42 pfam03133 TTL Tubulin-tyrosine 98.9 4.4E-08 1.1E-12 73.4 11.0 75 135-216 42-124 (291)
43 PRK12999 pyruvate carboxylase; 98.8 5E-06 1.3E-10 59.9 19.6 278 1-307 2-317 (1147)
44 COG0458 CarB Carbamoylphosphat 98.8 3.3E-07 8.3E-12 67.7 13.3 263 23-306 17-309 (400)
45 PRK08463 acetyl-CoA carboxylas 98.8 3.7E-06 9.5E-11 60.7 18.5 267 20-308 10-314 (478)
46 TIGR01235 pyruv_carbox pyruvat 98.8 1E-07 2.7E-12 70.9 10.5 263 25-307 12-318 (1169)
47 TIGR01369 CPSaseII_lrg carbamo 98.7 3.5E-06 8.9E-11 60.9 17.0 266 16-310 589-885 (1089)
48 PRK00885 phosphoribosylamine-- 98.7 8.7E-06 2.2E-10 58.3 17.9 278 5-312 1-314 (424)
49 TIGR01161 purK phosphoribosyla 98.7 4E-07 1E-11 67.1 10.6 215 25-273 12-257 (386)
50 COG2308 Uncharacterized conser 98.6 5.9E-07 1.5E-11 66.0 10.8 206 20-246 229-473 (488)
51 PRK13790 phosphoribosylamine-- 98.6 9.2E-06 2.3E-10 58.2 16.5 218 82-311 63-311 (415)
52 PRK05294 carB carbamoyl phosph 98.6 1.5E-05 3.8E-10 56.8 17.6 283 3-308 6-325 (1063)
53 COG0026 PurK Phosphoribosylami 98.6 1.1E-06 2.7E-11 64.3 11.5 231 24-284 13-264 (375)
54 KOG3895 consensus 98.6 5E-08 1.3E-12 73.0 4.6 188 83-288 156-368 (488)
55 PRK12815 carB carbamoyl phosph 98.6 3.7E-05 9.5E-10 54.2 18.8 65 137-203 684-749 (1068)
56 PRK13789 phosphoribosylamine-- 98.6 1.8E-05 4.6E-10 56.2 16.5 284 1-312 1-321 (426)
57 PRK12815 carB carbamoyl phosph 98.5 2.2E-05 5.6E-10 55.7 16.7 281 4-308 7-324 (1068)
58 TIGR00877 purD phosphoribosyla 98.5 7.2E-06 1.8E-10 58.9 14.1 220 83-313 69-338 (459)
59 PRK05294 carB carbamoyl phosph 98.5 2E-05 5.1E-10 56.0 15.9 263 22-309 574-862 (1063)
60 PRK06395 phosphoribosylamine-- 98.5 7.6E-05 1.9E-09 52.2 17.6 280 3-311 1-318 (435)
61 COG0151 PurD Phosphoribosylami 98.4 0.00013 3.4E-09 50.6 17.8 220 82-312 63-315 (428)
62 COG0027 PurT Formate-dependent 98.4 2.1E-05 5.3E-10 55.9 13.0 179 97-288 84-285 (394)
63 PRK05784 phosphoribosylamine-- 98.3 0.00029 7.4E-09 48.4 18.0 218 82-312 69-335 (485)
64 COG3919 Predicted ATP-grasp en 98.2 8.7E-07 2.2E-11 64.9 2.7 162 136-307 128-307 (415)
65 TIGR02712 urea_carbox urea car 98.2 2.2E-05 5.5E-10 55.7 9.4 184 106-307 92-312 (1226)
66 pfam04174 DUF407 Domain of unk 98.0 1.9E-05 4.9E-10 56.1 7.2 109 136-245 13-140 (145)
67 COG1038 PycA Pyruvate carboxyl 98.0 0.00017 4.3E-09 49.9 11.9 281 3-305 6-317 (1149)
68 pfam03738 GSP_synth Glutathion 97.8 5.8E-05 1.5E-09 52.9 5.6 193 6-238 159-364 (372)
69 PHA02117 glutathionylspermidin 97.7 2.8E-05 7.2E-10 55.0 3.6 197 6-238 177-386 (395)
70 COG4770 Acetyl/propionyl-CoA c 97.7 0.0023 5.8E-08 42.5 13.1 182 111-307 99-313 (645)
71 KOG0369 consensus 97.7 0.00098 2.5E-08 44.9 10.7 188 110-307 130-345 (1176)
72 KOG0238 consensus 97.6 0.0078 2E-07 39.0 15.7 178 111-306 95-308 (670)
73 TIGR01369 CPSaseII_lrg carbamo 97.4 0.0025 6.4E-08 42.2 10.3 251 28-306 33-322 (1089)
74 COG0754 Gsp Glutathionylspermi 97.4 0.00016 4.2E-09 50.0 4.1 185 6-227 174-368 (387)
75 KOG0370 consensus 97.3 0.0036 9.3E-08 41.1 9.4 192 111-309 1017-1227(1435)
76 KOG0237 consensus 97.2 0.017 4.4E-07 36.7 11.9 201 104-311 87-320 (788)
77 TIGR00514 accC acetyl-CoA carb 96.7 0.0031 7.8E-08 41.6 5.1 181 105-305 92-313 (451)
78 PRK06524 biotin carboxylase-li 96.7 0.01 2.6E-07 38.2 7.6 159 111-284 112-306 (480)
79 KOG1057 consensus 96.4 0.0027 6.8E-08 42.0 3.2 88 196-287 230-323 (1018)
80 KOG2156 consensus 96.3 0.0023 5.7E-08 42.5 2.3 71 136-216 282-360 (662)
81 PRK10507 bifunctional glutathi 95.7 0.028 7.1E-07 35.4 5.5 184 21-227 393-599 (619)
82 pfam08886 GshA Glutamate-cyste 94.2 0.13 3.3E-06 31.0 5.4 88 159-247 263-364 (404)
83 TIGR01142 purT phosphoribosylg 94.1 0.53 1.4E-05 26.9 9.2 234 24-284 11-280 (407)
84 KOG2158 consensus 91.8 0.15 3.9E-06 30.5 2.9 95 112-216 173-282 (565)
85 KOG0368 consensus 91.6 0.73 1.9E-05 26.1 6.2 181 110-304 161-394 (2196)
86 KOG2157 consensus 90.6 0.42 1.1E-05 27.6 4.1 80 135-217 174-268 (497)
87 COG1181 DdlA D-alanine-D-alani 88.9 0.1 2.7E-06 31.6 0.0 84 144-230 74-162 (317)
88 COG1819 Glycosyl transferases, 87.0 1.2 3E-05 24.7 4.4 40 4-46 1-40 (406)
89 cd03802 GT1_AviGT4_like This f 84.5 1.2 3E-05 24.7 3.4 41 5-45 1-46 (335)
90 cd04962 GT1_like_5 This family 83.9 3.7 9.3E-05 21.5 6.6 38 5-44 1-38 (371)
91 PRK08605 D-lactate dehydrogena 83.7 3.7 9.4E-05 21.4 5.7 86 4-123 1-104 (332)
92 TIGR02049 gshA_ferroox glutama 82.0 4.3 0.00011 21.0 6.1 144 126-269 224-399 (436)
93 COG0124 HisS Histidyl-tRNA syn 78.8 5.5 0.00014 20.3 7.0 36 240-276 335-370 (429)
94 pfam08442 ATP-grasp_2 ATP-gras 78.0 5.8 0.00015 20.1 6.4 71 133-204 14-102 (202)
95 PRK13278 purP 5-formaminoimida 77.6 2.4 6.2E-05 22.6 3.0 220 20-264 25-278 (356)
96 TIGR01426 MGT glycosyltransfer 76.4 1.8 4.6E-05 23.5 2.1 26 23-48 11-36 (429)
97 cd03805 GT1_ALG2_like This fam 74.9 3.4 8.6E-05 21.7 3.2 38 5-43 1-38 (392)
98 COG2910 Putative NADH-flavin r 72.2 6 0.00015 20.1 3.9 105 5-127 1-115 (211)
99 COG1759 5-formaminoimidazole-4 71.8 3.1 7.9E-05 21.9 2.4 165 20-204 25-203 (361)
100 PRK05671 aspartate-semialdehyd 71.7 8.3 0.00021 19.1 7.4 102 1-123 1-102 (336)
101 pfam07894 DUF1669 Protein of u 71.2 2.1 5.3E-05 23.1 1.4 13 210-222 205-217 (284)
102 COG0045 SucC Succinyl-CoA synt 70.8 2.2 5.7E-05 22.9 1.5 55 136-191 18-78 (387)
103 cd03784 GT1_Gtf_like This fami 70.0 6.4 0.00016 19.9 3.7 38 5-46 1-39 (401)
104 PRK13277 5-formaminoimidazole- 69.4 4.8 0.00012 20.7 2.9 220 20-264 21-284 (363)
105 TIGR00289 TIGR00289 conserved 67.8 7.4 0.00019 19.4 3.6 30 5-41 1-30 (227)
106 cd03817 GT1_UGDG_like This fam 67.2 10 0.00026 18.5 4.3 40 6-45 1-41 (374)
107 TIGR01435 glu_cys_lig_rel puta 64.2 5.8 0.00015 20.2 2.5 134 137-276 505-705 (754)
108 cd03820 GT1_amsD_like This fam 63.4 7.6 0.00019 19.4 3.0 39 6-44 1-39 (348)
109 PRK08534 pyruvate ferredoxin o 63.3 12 0.00031 18.0 7.6 82 24-120 18-100 (181)
110 TIGR01497 kdpB K+-transporting 62.4 9.2 0.00023 18.8 3.2 31 255-285 156-191 (675)
111 COG1707 ACT domain-containing 62.1 6.3 0.00016 19.9 2.4 100 179-281 53-157 (218)
112 TIGR01986 glut_syn_euk glutath 61.7 8.7 0.00022 19.0 3.0 121 114-241 339-481 (507)
113 pfam04007 DUF354 Protein of un 60.9 10 0.00025 18.6 3.2 34 5-42 1-34 (335)
114 cd03808 GT1_cap1E_like This fa 60.0 10 0.00026 18.5 3.1 39 6-47 1-39 (359)
115 TIGR02774 rexB_recomb ATP-depe 59.8 6.2 0.00016 20.0 2.0 24 26-49 17-40 (1116)
116 TIGR01743 purR_Bsub pur operon 57.1 12 0.00029 18.2 3.0 119 114-242 14-178 (269)
117 cd03823 GT1_ExpE7_like This fa 55.3 12 0.0003 18.1 2.8 41 6-46 1-43 (359)
118 pfam04169 DUF404 Domain of unk 54.9 11 0.00027 18.4 2.5 17 136-152 90-106 (253)
119 cd03825 GT1_wcfI_like This fam 54.0 13 0.00034 17.8 2.9 39 5-44 1-39 (365)
120 PRK00207 hypothetical protein; 53.6 13 0.00033 17.9 2.8 34 5-39 1-35 (128)
121 PRK10307 predicted glycosyl tr 53.6 18 0.00045 17.0 5.0 36 5-43 1-40 (415)
122 cd03799 GT1_amsK_like This is 53.5 18 0.00045 17.0 4.4 36 6-45 1-38 (355)
123 PRK11914 diacylglycerol kinase 53.3 18 0.00046 16.9 3.6 41 2-42 4-44 (304)
124 TIGR00658 orni_carb_tr ornithi 52.5 18 0.00047 16.9 4.7 82 5-117 46-128 (341)
125 cd04951 GT1_WbdM_like This fam 51.7 15 0.00039 17.4 2.9 38 6-44 1-38 (360)
126 PRK10909 rsmD 16S rRNA m(2)G96 51.1 12 0.00031 18.1 2.3 17 81-99 119-135 (198)
127 PRK09922 UDP-D-galactose:(gluc 49.7 16 0.00041 17.2 2.8 39 3-41 1-39 (361)
128 KOG2155 consensus 49.0 9.9 0.00025 18.6 1.6 80 136-222 385-478 (631)
129 COG1553 DsrE Uncharacterized c 48.1 18 0.00046 16.9 2.8 37 5-41 1-38 (126)
130 cd03821 GT1_Bme6_like This fam 47.5 22 0.00056 16.4 3.8 37 6-45 1-41 (375)
131 pfam09182 PuR_N Bacterial puri 46.3 14 0.00036 17.6 2.0 50 125-175 17-69 (70)
132 PRK09739 hypothetical protein; 46.0 21 0.00054 16.5 2.9 40 4-48 3-47 (201)
133 cd03811 GT1_WabH_like This fam 45.5 22 0.00057 16.3 2.9 37 6-45 1-39 (353)
134 COG0132 BioD Dethiobiotin synt 45.1 24 0.00061 16.1 3.9 34 4-45 1-41 (223)
135 TIGR01016 sucCoAbeta succinyl- 44.8 9.9 0.00025 18.6 1.1 54 136-190 18-77 (389)
136 PRK13055 putative lipid kinase 43.3 26 0.00065 15.9 3.8 39 3-41 1-39 (334)
137 cd03822 GT1_ecORF704_like This 43.2 26 0.00065 15.9 3.0 41 6-46 1-41 (366)
138 TIGR02196 GlrX_YruB Glutaredox 41.7 24 0.00061 16.1 2.6 23 254-276 11-33 (79)
139 COG0742 N6-adenine-specific me 40.7 26 0.00066 15.9 2.7 18 24-41 54-71 (187)
140 KOG2799 consensus 40.2 15 0.00039 17.4 1.4 37 237-277 317-359 (434)
141 cd03801 GT1_YqgM_like This fam 40.1 28 0.00073 15.6 3.1 42 6-47 1-43 (374)
142 PRK00654 glgA glycogen synthas 39.9 29 0.00073 15.6 3.3 40 5-44 1-43 (476)
143 pfam03033 Glyco_transf_28 Glyc 38.9 23 0.00059 16.2 2.2 22 24-45 15-36 (136)
144 cd03814 GT1_like_2 This family 38.9 30 0.00076 15.5 4.1 43 6-48 1-44 (364)
145 KOG1401 consensus 38.1 31 0.00078 15.4 3.0 82 136-224 181-286 (433)
146 TIGR02104 pulA_typeI pullulana 37.7 31 0.00079 15.4 4.3 153 115-283 108-277 (655)
147 TIGR02095 glgA glycogen/starch 37.0 32 0.00081 15.3 2.9 47 5-51 1-50 (517)
148 COG4826 Serine protease inhibi 36.9 23 0.00058 16.3 1.9 70 76-145 118-192 (410)
149 TIGR02628 fuculo_kin_coli L-fu 36.3 30 0.00076 15.5 2.4 59 158-219 344-411 (473)
150 cd03785 GT1_MurG MurG is an N- 36.1 33 0.00084 15.2 3.2 21 24-44 16-36 (350)
151 pfam09757 Arb2 Arb2 domain. A 35.7 33 0.00085 15.2 3.6 10 212-221 76-85 (156)
152 KOG1436 consensus 35.4 17 0.00044 17.0 1.1 30 9-39 46-75 (398)
153 PRK13337 putative lipid kinase 35.3 34 0.00086 15.1 3.9 40 3-42 1-40 (305)
154 cd01994 Alpha_ANH_like_IV This 35.3 28 0.00072 15.6 2.2 24 17-41 6-29 (194)
155 cd04738 DHOD_2_like Dihydrooro 35.2 29 0.00073 15.6 2.2 21 5-29 1-21 (327)
156 COG1798 DPH5 Diphthamide biosy 34.7 34 0.00088 15.1 3.3 55 79-135 72-131 (260)
157 TIGR01973 NuoG NADH-quinone ox 34.5 35 0.00089 15.0 3.6 24 27-50 16-40 (715)
158 PRK06932 glycerate dehydrogena 34.2 19 0.00047 16.8 1.1 75 229-315 224-311 (314)
159 PRK06274 indolepyruvate oxidor 33.9 36 0.00091 15.0 7.7 78 24-118 19-97 (195)
160 PRK00366 ispG 4-hydroxy-3-meth 33.4 35 0.00089 15.0 2.4 21 23-43 43-63 (367)
161 PRK06847 hypothetical protein; 33.4 36 0.00092 14.9 4.3 38 1-46 1-38 (375)
162 pfam03602 Cons_hypoth95 Conser 33.2 33 0.00083 15.2 2.2 21 24-44 54-75 (181)
163 pfam03446 NAD_binding_2 NAD bi 32.9 37 0.00094 14.9 3.9 33 4-44 1-33 (163)
164 PRK00856 pyrB aspartate carbam 32.7 21 0.00054 16.5 1.2 73 18-117 53-128 (304)
165 cd03794 GT1_wbuB_like This fam 32.5 37 0.00095 14.8 2.9 39 6-44 1-40 (394)
166 PRK13581 D-3-phosphoglycerate 32.5 23 0.00058 16.3 1.3 73 229-312 219-302 (524)
167 pfam11379 DUF3182 Protein of u 32.4 38 0.00096 14.8 6.7 122 137-259 114-251 (355)
168 TIGR00706 SppA_dom signal pept 32.3 38 0.00096 14.8 3.0 13 81-93 42-54 (224)
169 TIGR00095 TIGR00095 putative m 32.0 31 0.0008 15.4 2.0 19 24-42 66-84 (210)
170 PRK00861 putative lipid kinase 31.0 40 0.001 14.7 3.7 38 3-41 1-38 (296)
171 pfam09886 DUF2113 Uncharacteri 30.9 40 0.001 14.7 4.6 115 133-263 50-185 (189)
172 pfam01558 POR Pyruvate ferredo 30.7 40 0.001 14.7 6.5 79 23-118 8-86 (127)
173 TIGR00973 leuA_bact 2-isopropy 30.7 40 0.001 14.7 3.9 20 280-308 484-503 (514)
174 pfam04551 GcpE GcpE protein. I 30.3 35 0.0009 15.0 2.0 23 22-44 31-53 (345)
175 COG0345 ProC Pyrroline-5-carbo 30.1 41 0.001 14.6 2.7 32 283-314 224-257 (266)
176 PRK06476 pyrroline-5-carboxyla 29.8 41 0.0011 14.6 3.0 31 284-314 218-250 (255)
177 COG0167 PyrD Dihydroorotate de 29.6 37 0.00095 14.9 2.0 41 144-191 144-184 (310)
178 TIGR03334 IOR_beta indolepyruv 29.4 42 0.0011 14.5 7.0 77 24-118 17-94 (189)
179 LOAD_surE consensus 29.3 42 0.0011 14.5 3.5 38 5-46 1-38 (192)
180 TIGR01281 DPOR_bchL light-inde 29.0 14 0.00037 17.5 -0.2 35 16-50 35-77 (275)
181 PRK01231 ppnK inorganic polyph 28.6 44 0.0011 14.4 3.0 40 1-42 1-40 (296)
182 TIGR01963 PHB_DH 3-hydroxybuty 28.3 23 0.00059 16.2 0.8 17 26-42 16-32 (258)
183 cd01126 TraG_VirD4 The TraG/Tr 28.2 44 0.0011 14.4 2.6 30 18-47 32-61 (384)
184 pfam03358 FMN_red NADPH-depend 27.6 45 0.0012 14.3 2.7 38 5-47 1-43 (147)
185 pfam02576 DUF150 Uncharacteriz 27.6 40 0.001 14.6 1.9 10 31-40 6-15 (141)
186 pfam03485 Arg_tRNA_synt_N Argi 27.6 45 0.0012 14.3 3.4 51 226-280 29-80 (84)
187 TIGR01036 pyrD_sub2 dihydrooro 27.4 35 0.00088 15.1 1.5 18 298-315 337-354 (370)
188 COG1832 Predicted CoA-binding 27.2 46 0.0012 14.3 4.3 55 2-60 14-70 (140)
189 cd03818 GT1_ExpC_like This fam 27.0 46 0.0012 14.2 4.1 33 6-44 1-33 (396)
190 pfam01726 LexA_DNA_bind LexA D 27.0 46 0.0012 14.2 5.9 48 246-312 2-52 (65)
191 cd03807 GT1_WbnK_like This fam 26.8 47 0.0012 14.2 2.7 35 6-43 1-37 (365)
192 COG0647 NagD Predicted sugar p 26.8 47 0.0012 14.2 2.5 78 78-157 10-89 (269)
193 pfam04127 DFP DNA / pantothena 26.1 48 0.0012 14.1 2.8 20 23-42 30-49 (197)
194 cd07019 S49_SppA_1 Signal pept 26.1 48 0.0012 14.1 2.6 63 113-175 44-111 (211)
195 TIGR03381 agmatine_aguB N-carb 26.0 40 0.001 14.7 1.6 38 5-42 1-39 (279)
196 COG2102 Predicted ATPases of P 26.0 48 0.0012 14.1 3.8 23 18-41 8-30 (223)
197 cd07014 S49_SppA Signal peptid 25.6 49 0.0013 14.1 2.6 75 101-175 27-112 (177)
198 TIGR02639 ClpA ATP-dependent C 24.7 24 0.0006 16.2 0.3 54 254-312 542-607 (774)
199 TIGR02143 trmA_only tRNA (urac 24.7 51 0.0013 14.0 2.8 185 26-276 15-208 (361)
200 pfam00201 UDPGT UDP-glucoronos 24.0 52 0.0013 13.9 3.4 24 23-46 15-38 (501)
201 PRK06853 indolepyruvate oxidor 23.9 53 0.0013 13.9 7.2 78 24-118 20-98 (197)
202 PRK12491 pyrroline-5-carboxyla 23.9 53 0.0013 13.9 3.1 30 285-314 229-260 (272)
203 TIGR01320 mal_quin_oxido malat 23.8 53 0.0013 13.9 2.9 176 24-230 181-401 (487)
204 PRK09836 DNA-binding transcrip 23.6 53 0.0014 13.8 3.0 67 5-106 1-67 (226)
205 PRK06487 glycerate dehydrogena 23.5 50 0.0013 14.0 1.7 73 229-313 224-307 (317)
206 TIGR03590 PseG pseudaminic aci 23.4 54 0.0014 13.8 4.6 39 5-43 1-40 (280)
207 TIGR02090 LEU1_arch isopropylm 23.0 55 0.0014 13.8 2.2 58 105-164 120-191 (371)
208 PRK00726 murG N-acetylglucosam 23.0 55 0.0014 13.8 3.0 23 294-316 337-359 (359)
209 PRK09620 hypothetical protein; 22.8 55 0.0014 13.7 3.1 20 23-42 31-50 (229)
210 TIGR01133 murG undecaprenyldip 22.8 55 0.0014 13.7 2.8 71 1-96 2-75 (368)
211 PRK11880 pyrroline-5-carboxyla 22.7 56 0.0014 13.7 3.0 31 284-314 226-258 (267)
212 cd04739 DHOD_like Dihydroorota 22.5 56 0.0014 13.7 3.7 20 21-40 22-41 (325)
213 TIGR00313 cobQ cobyric acid sy 22.2 23 0.00059 16.2 -0.2 72 105-177 116-194 (502)
214 pfam02384 N6_Mtase N-6 DNA Met 21.8 58 0.0015 13.6 3.5 16 80-97 123-138 (312)
215 COG2044 Predicted peroxiredoxi 21.4 59 0.0015 13.5 2.3 39 5-43 3-41 (120)
216 COG1871 CheD Chemotaxis protei 21.1 58 0.0015 13.6 1.7 34 143-176 113-147 (164)
217 TIGR01284 alt_nitrog_alph nitr 21.0 49 0.0013 14.1 1.3 11 94-104 100-110 (468)
218 PRK05778 2-oxoglutarate ferred 21.0 60 0.0015 13.5 3.3 12 26-37 32-43 (306)
219 TIGR02693 arsenite_ox_L arseni 20.9 60 0.0015 13.5 3.9 210 94-313 322-618 (858)
220 PRK12292 hisZ ATP phosphoribos 20.8 61 0.0015 13.5 9.2 33 244-277 329-361 (388)
221 TIGR03026 NDP-sugDHase nucleot 20.8 61 0.0016 13.5 4.1 101 5-120 1-122 (411)
222 TIGR02198 rfaE_dom_I rfaE bifu 20.7 61 0.0016 13.4 3.0 173 7-226 67-262 (321)
223 PRK12374 putative dithiobiotin 20.6 61 0.0016 13.4 3.7 21 23-43 19-39 (231)
224 KOG1403 consensus 20.5 24 0.00062 16.1 -0.4 77 199-279 267-376 (452)
225 PRK07565 dihydroorotate dehydr 20.4 62 0.0016 13.4 3.7 18 21-38 23-40 (333)
226 PRK08338 2-oxoglutarate ferred 20.4 62 0.0016 13.4 6.9 78 23-118 16-94 (170)
227 PRK10949 protease 4; Provision 20.2 62 0.0016 13.4 3.0 13 210-222 327-339 (618)
228 TIGR00868 hCaCC calcium-activa 20.1 55 0.0014 13.8 1.4 65 163-244 379-446 (874)
229 pfam01210 NAD_Gly3P_dh_N NAD-d 20.0 63 0.0016 13.4 3.6 122 26-155 14-143 (159)
No 1
>TIGR01380 glut_syn glutathione synthase; InterPro: IPR006284 These are the glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions. ; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process.
Probab=100.00 E-value=0 Score=773.76 Aligned_cols=310 Identities=45% Similarity=0.845 Sum_probs=304.7
Q ss_pred CEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEE----CC-----CCCEEEECCC
Q ss_conf 31899709988848476467999999998898899995412489998999999999980----77-----7412650464
Q gi|254780696|r 5 RNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLD----EK-----KEQYYSLGEE 75 (316)
Q Consensus 5 ~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~----~~-----~~~~f~~~~~ 75 (316)
|||+||||||++++++||||++||+|||+|||++||+.+++||+++|+++|.++++++. .+ ...||++++.
T Consensus 1 lkva~~mDPi~~~~~~~D~t~alm~EaQ~RgH~~f~~~~~~Ls~~~G~~~A~~~~~~~~pv~~~~~~WQv~~~w~~~~~~ 80 (322)
T TIGR01380 1 LKVAFLMDPIESIKIGKDTTFALMEEAQKRGHELFFYEPGDLSVKNGRVFARAAPVKVLPVQLDDDRWQVKQDWYTLGEK 80 (322)
T ss_pred CEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEECCCEEEECCHHHEEEEEEEEEEEEECCCCCEECHHHHHHHHH
T ss_conf 96899966531053786707999989854693899984361111023111002106686058718801011278887665
Q ss_pred CCCCHH-HCCEEEEECCCCCCHHHHHHHHHHHHHCC-CCEEECCHHHHHHCCCHHHHHHHHHHCCCCEEECCHHHHHHHH
Q ss_conf 435210-06366883288622479999999986235-8504117488752565034334543044310003724556888
Q gi|254780696|r 76 KIIDLS-QMDVILIRQDPPFNMHYITSTYLLEKINP-ETLIVNNPFWIRNSPEKIFVTEFSELMPPTLISRDITQITRFY 153 (316)
Q Consensus 76 ~~~~L~-~fD~i~iR~dPp~d~~yi~~~~~Le~~~~-~~~viN~p~~i~~~~eKl~~~~~~~~~P~T~vt~~~~~~~~f~ 153 (316)
+.+.|. ++|+||||||||||++|||+||+||.++. |++|||+|++||+||||||+++||.++|||+||+|..++++|+
T Consensus 81 ~~~~L~d~~d~vlMRkDPPf~~~Y~yaT~lLe~~~~~g~~viN~P~~lRd~NEKl~~~~Fp~~~ppTLvt~~~~~ir~F~ 160 (322)
T TIGR01380 81 VRLALKDELDVVLMRKDPPFDMEYIYATYLLELAEPTGTLVINSPQGLRDANEKLFALQFPKVIPPTLVTRDKAEIRAFL 160 (322)
T ss_pred HHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCHHHCCCHHHHHHCCCCCCCCCCEECCHHHHHHHH
T ss_conf 42011357429998475098631544677887784279679848823224660345433412358850106779999999
Q ss_pred HHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEECCEEEE-EEEEECCCCC
Q ss_conf 852143311168854344687448871158899999840013340021053445682699998998863-2122045686
Q gi|254780696|r 154 LEMKDIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGKPVG-AVNRIPSEVD 232 (316)
Q Consensus 154 ~~~~~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~g~~v~-a~~R~~~~~~ 232 (316)
++|+++|+|||+|+||.||++++.+|+|+++++|.+++.++.++|+|+|||++++|||||++|||+||+ |+.|+|+.|+
T Consensus 161 ~e~~divLKPL~g~GG~gi~Rl~~~DpN~~~i~E~~~~~g~~~~~aQ~ylpei~~GDKRilL~~G~Pig~a~~Rip~~gE 240 (322)
T TIGR01380 161 AEHGDIVLKPLDGMGGEGIFRLDPGDPNLNSILETLTQLGREPVMAQRYLPEIKEGDKRILLIDGEPIGYAVARIPAGGE 240 (322)
T ss_pred HHHHCEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECHHHHHHCCCEEEEECCEECCCCEEECCCCCC
T ss_conf 87512587266677784367617899855689888765267168765020576617965999788350010140278875
Q ss_pred CCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEECCEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 00000014731110077899999999999999849879999511787889836883037889975199989999999988
Q gi|254780696|r 233 NRSNIHAGGKAELTKLTKIDLDICKRIGESLRERGLFFTGIDVIGDYITEINVTSPTCIREIHRNGGENVASLFWDGIEK 312 (316)
Q Consensus 233 ~r~Nl~~Gg~~~~~~lt~~~~~i~~~~~~~L~~~gl~~~GiDiig~~i~EvNvtsP~g~~~~~~~~~~~i~~~i~d~ie~ 312 (316)
||+|+++||+++..+||++|+|||..++|.|++.||+|||||+||+||||||||||||++||++++|+++++++||+||+
T Consensus 241 ~RgNlavGG~~~a~~L~~rD~eIc~~~~P~L~~rGl~fvGiDVIG~~LTEvNVTSPTGi~Ei~~~~G~~~~~~~~d~~E~ 320 (322)
T TIGR01380 241 FRGNLAVGGRGEAQELSERDREICATVAPELKRRGLLFVGIDVIGGYLTEVNVTSPTGIREIDRQKGVNIAEQLIDAIEK 320 (322)
T ss_pred CCHHHCCCCEEEECCCCHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 00020028862200266789999987161002077479754677780079831464568988763585589999999874
Q ss_pred HH
Q ss_conf 63
Q gi|254780696|r 313 IK 314 (316)
Q Consensus 313 ~~ 314 (316)
..
T Consensus 321 ~~ 322 (322)
T TIGR01380 321 AV 322 (322)
T ss_pred CC
T ss_conf 09
No 2
>PRK05246 glutathione synthetase; Provisional
Probab=100.00 E-value=0 Score=743.37 Aligned_cols=312 Identities=50% Similarity=0.880 Sum_probs=306.5
Q ss_pred CCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHHHC
Q ss_conf 33189970998884847646799999999889889999541248999899999999998077741265046443521006
Q gi|254780696|r 4 IRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQM 83 (316)
Q Consensus 4 ~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~~f 83 (316)
||||||||||++++||++|||++||+|||+|||+||||+|+||++.+|+++|.++++++.++...||++++++.++|++|
T Consensus 1 mmki~f~mDpie~l~~~kDTT~~Lm~eAq~rGhev~~~~p~dL~~~~~~v~a~~~~v~~~~~~~~~~~~~~~~~~~L~~f 80 (316)
T PRK05246 1 MMKVAFIMDPIESINIKKDSTFAMMLEAQRRGHELFYYEPDDLSLRGGEVRARARPLTVRDDKGDWYELGEEQRLPLADF 80 (316)
T ss_pred CCEEEEEECCHHHCCCCCCHHHHHHHHHHHCCCEEEEEECCCEEEECCEEEEEEEEEEECCCCCCCEEECCCEECCHHHC
T ss_conf 94799996897877998872999999999879989999727569989999999999998158887479415155130019
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCC-CCEEECCHHHHHHCCCHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 366883288622479999999986235-8504117488752565034334543044310003724556888852143311
Q gi|254780696|r 84 DVILIRQDPPFNMHYITSTYLLEKINP-ETLIVNNPFWIRNSPEKIFVTEFSELMPPTLISRDITQITRFYLEMKDIIIK 162 (316)
Q Consensus 84 D~i~iR~dPp~d~~yi~~~~~Le~~~~-~~~viN~p~~i~~~~eKl~~~~~~~~~P~T~vt~~~~~~~~f~~~~~~vViK 162 (316)
|+||||+|||||++|+++||+||+++. |++|+|+|.|||++||||++++|++++|+|+||+|.+++++|+++|+++|+|
T Consensus 81 D~V~mRkDPPfD~~Yi~~T~lLe~~~~~gv~ViN~P~~IR~~nEKL~~l~F~~~iP~TlVt~~~~~i~~F~~~~~~iVlK 160 (316)
T PRK05246 81 DVILMRKDPPFDMEYIYATYLLERAERAGTLVVNKPQSLRDANEKLFTLWFPELMPPTLVTRDKAEIRAFRAEHGDIILK 160 (316)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCEEEE
T ss_conf 89999269999768889999998515387089769899864264788874064489935737899999999973878999
Q ss_pred CCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEECCEEEE-EEEEECCCCCCCCCCCCCC
Q ss_conf 168854344687448871158899999840013340021053445682699998998863-2122045686000000147
Q gi|254780696|r 163 PLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGKPVG-AVNRIPSEVDNRSNIHAGG 241 (316)
Q Consensus 163 Pl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~g~~v~-a~~R~~~~~~~r~Nl~~Gg 241 (316)
|++|+||+|||++++.|+|+++++|.+++.++.++|+|+|||++.+||+||+++||++++ |+.|+|++||||+|+|+||
T Consensus 161 PL~g~gG~gV~~i~~~d~n~~~i~e~~t~~~~~~v~vQ~yl~ei~~GDkRiilv~G~~ig~a~~R~p~~gdfR~Nl~~Gg 240 (316)
T PRK05246 161 PLDGMGGAGIFRVKADDPNLGVILETLTEQGRRPVMAQRYLPEIKEGDKRILLVDGEPVGYALARIPAGGETRGNLAAGG 240 (316)
T ss_pred ECCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEEEHHHCCCCCEEEEEECCEEEHHEEEECCCCCCCEEEEECCC
T ss_conf 75688984089977786238999999974587368988651243689879999999991146883267886113230598
Q ss_pred CEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEECCEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf 31110077899999999999999849879999511787889836883037889975199989999999988633
Q gi|254780696|r 242 KAELTKLTKIDLDICKRIGESLRERGLFFTGIDVIGDYITEINVTSPTCIREIHRNGGENVASLFWDGIEKIKE 315 (316)
Q Consensus 242 ~~~~~~lt~~~~~i~~~~~~~L~~~gl~~~GiDiig~~i~EvNvtsP~g~~~~~~~~~~~i~~~i~d~ie~~~~ 315 (316)
++++++||++++++|.++++.|+++||+|||||+||+||+|||||||||++|+++++|+|+|+.+||++|+...
T Consensus 241 ~~~~~~lt~~~~~i~~~i~p~L~~~gl~f~GiDvig~~ltEINVTSPtgl~ei~~~~~~~~~~~~~d~lE~~~~ 314 (316)
T PRK05246 241 RGEATPLTERDREICAAIGPELKERGLIFVGIDVIGDYLTEINVTSPTGIREIERLTGVDIAGMLWDAIEAKLA 314 (316)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCEEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 02671699899999999999999879889999753782689936895459999987599989999999998761
No 3
>PRK12458 glutathione synthetase; Provisional
Probab=100.00 E-value=0 Score=694.81 Aligned_cols=308 Identities=32% Similarity=0.506 Sum_probs=280.8
Q ss_pred CEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCC------CCEEE--ECCCC
Q ss_conf 31899709988848476467999999998898899995412489998999999999980777------41265--04644
Q gi|254780696|r 5 RNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKK------EQYYS--LGEEK 76 (316)
Q Consensus 5 ~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~------~~~f~--~~~~~ 76 (316)
|||||||||++++||++|||+ ||+|||+|||+||||+|+||++.+++++|.++.+...... ..||+ ..+++
T Consensus 1 MkI~f~mDpie~l~~~kDTT~-lm~eA~~RGhev~~~~~~dL~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (349)
T PRK12458 1 MRICFVVNPWETEEPETDTTR-LAHEAVNRGHEVAYMTPGDLTMRDDEAIAFCAVTVKGLKYKTPENFLSFLQGKEFKKA 79 (349)
T ss_pred CEEEEEECCHHHCCCCCCHHH-HHHHHHHCCCEEEEEECCCEEEECCEEEEEEEEEECCCCCCCCCHHHHHHHHCCCCEE
T ss_conf 969999489777799866999-9999998699899995682699899789998886215544563024555542134404
Q ss_pred CCCHHHCCEEEEECCCCCCHH------HHHHHHHHHHHCCCCEEECCHHHHHHCCCHHHHHHHHHHC-CCCEEECCHHHH
Q ss_conf 352100636688328862247------9999999986235850411748875256503433454304-431000372455
Q gi|254780696|r 77 IIDLSQMDVILIRQDPPFNMH------YITSTYLLEKINPETLIVNNPFWIRNSPEKIFVTEFSELM-PPTLISRDITQI 149 (316)
Q Consensus 77 ~~~L~~fD~i~iR~dPp~d~~------yi~~~~~Le~~~~~~~viN~p~~i~~~~eKl~~~~~~~~~-P~T~vt~~~~~~ 149 (316)
.++|++||+||||+|||||+. |++.++++.....+++|||+|+|||+||||||+++||+++ |+|+||+|.+++
T Consensus 80 ~l~L~~~D~I~mRkDPPfD~~yln~~~yi~~~~l~~~~~~gv~VIN~P~slR~~nEKL~~~~Fp~~i~P~TLVT~d~~~I 159 (349)
T PRK12458 80 RLPLAGFDVLFLRNNPSLDNLARPWADSVGIIFGRLAMRDGVLVLNDPDGLRIANNKLYFQSFPEEVRPTTHISRNREEI 159 (349)
T ss_pred ECCHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHCCCCHHHHHHCCCCCCCCEEEECCHHHH
T ss_conf 36565698999948999983126599999999998765089889818599861701200641555479877986799999
Q ss_pred HHHHHHHH--HHHHHCCCCCCCCCEEEECCCC-CCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEECCEEE-----
Q ss_conf 68888521--4331116885434468744887-115889999984001334002105344568269999899886-----
Q gi|254780696|r 150 TRFYLEMK--DIIIKPLYGNGGTGVFRITLGD-RNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGKPV----- 221 (316)
Q Consensus 150 ~~f~~~~~--~vViKPl~g~~G~gV~~i~~~~-~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~g~~v----- 221 (316)
++|+++|+ ++|+|||+|+||+|||++++.| +|+++++|.+++.+ ++|+|+|||++.+||+||+++||+|+
T Consensus 160 ~~F~~~~k~~~iIlKPL~G~GG~gIf~i~~~d~~Nl~~I~e~~~~~~--~vm~Q~flpei~~GDkRIilinGepi~~~~~ 237 (349)
T PRK12458 160 RAFLEESPSDKMILKPLQGSGGQGVFLIEKSAESNLNQILEFYSGDG--YVIAQEYIPGAEEGDVRILMLNGEPLERDGR 237 (349)
T ss_pred HHHHHHCCCCCEEEEECCCCCCCCEEEECCCCHHHHHHHHHHHHCCC--CEEEECCCHHCCCCCEEEEEECCEEECCCCC
T ss_conf 99999815883898646788887638863574341999999970488--1999921003416886999999999114454
Q ss_pred -EEEEEECCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEECCEEEEEECCCCHHHHHHHHHCCC
Q ss_conf -3212204568600000014731110077899999999999999849879999511787889836883037889975199
Q gi|254780696|r 222 -GAVNRIPSEVDNRSNIHAGGKAELTKLTKIDLDICKRIGESLRERGLFFTGIDVIGDYITEINVTSPTCIREIHRNGGE 300 (316)
Q Consensus 222 -~a~~R~~~~~~~r~Nl~~Gg~~~~~~lt~~~~~i~~~~~~~L~~~gl~~~GiDiig~~i~EvNvtsP~g~~~~~~~~~~ 300 (316)
||++|+|++||||+|+|+||+++.++||+++++||.++++.|+++||+|||||+||+|++|||||||||++||++++|+
T Consensus 238 ~gal~RiP~~gd~R~Nl~~GG~~~~~~Lt~~d~~I~~~i~p~L~~~gl~fvGiDvIG~~LtEINVTSPtgi~ei~~~~~~ 317 (349)
T PRK12458 238 YAAMRRVPAEGDVRSNIHAGGTVVKHTLTKEELELCEHIRPKLVRDGLFFVGLDIVGDKLIEVNVFSPGGLGRINKLNNV 317 (349)
T ss_pred EEEEECCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCEEEECCCCCHHHHHHHHHHCC
T ss_conf 13565356676135565268863036889999999999999999879989999861784568817896029999875199
Q ss_pred CHHHHHHHHHHHHHC
Q ss_conf 989999999988633
Q gi|254780696|r 301 NVASLFWDGIEKIKE 315 (316)
Q Consensus 301 ~i~~~i~d~ie~~~~ 315 (316)
|+|+.+||++||.++
T Consensus 318 ~~a~~~~d~~E~~~~ 332 (349)
T PRK12458 318 DFSETIINAKERKVQ 332 (349)
T ss_pred CHHHHHHHHHHHHHH
T ss_conf 869999999999999
No 4
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=0 Score=473.98 Aligned_cols=302 Identities=36% Similarity=0.583 Sum_probs=280.8
Q ss_pred CEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCC-HHHC
Q ss_conf 318997099888484764679999999988988999954124899989999999999807774126504644352-1006
Q gi|254780696|r 5 RNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIID-LSQM 83 (316)
Q Consensus 5 ~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~-L~~f 83 (316)
||++++|||+++ ++.+|||+++|+++|+|||+++++.+.++++..+.+.|......+.+....|++........ +.++
T Consensus 1 mk~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (318)
T COG0189 1 MKLAILMDPIES-DIYKDTTFALMEAAQKRGHELAILDDGDLSLRKGEIKALARLVEVGEVIGLHYELIEEEDLSLLDEL 79 (318)
T ss_pred CCCCCCCCCCCC-CCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCC
T ss_conf 963101263214-7655439999887786073489971653114513368888665322100101243331002220367
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCC-CCEEECCHHHHHHCCCHHHHHHHHHH----CCCCEEECCHHHHHHHHHHH--
Q ss_conf 366883288622479999999986235-85041174887525650343345430----44310003724556888852--
Q gi|254780696|r 84 DVILIRQDPPFNMHYITSTYLLEKINP-ETLIVNNPFWIRNSPEKIFVTEFSEL----MPPTLISRDITQITRFYLEM-- 156 (316)
Q Consensus 84 D~i~iR~dPp~d~~yi~~~~~Le~~~~-~~~viN~p~~i~~~~eKl~~~~~~~~----~P~T~vt~~~~~~~~f~~~~-- 156 (316)
|++++|++||++. ++++|+.++. |++|||+|++|++|+||+++++|+.. +|+|+++.|+.++..|++++
T Consensus 80 D~i~~R~~~~~~~----~~~~~~~~E~~G~~viN~p~~i~~~~nK~~~~~~l~~~~ipvP~T~i~~~~~~~~~~~~~~~g 155 (318)
T COG0189 80 DVIIMRKDPPFDF----ATRFLRLAERKGVPVINDPQSIRRCRNKLYTTQLLAKAGIPVPPTLITRDPDEAAEFVAEHLG 155 (318)
T ss_pred CEEEECCCCHHHH----HHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCC
T ss_conf 2899737860456----899999998749868788799876355799999999659999986896584788999997468
Q ss_pred HHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEECCEEEE--EEEEECCCCCCC
Q ss_conf 143311168854344687448871158899999840013340021053445682699998998863--212204568600
Q gi|254780696|r 157 KDIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGKPVG--AVNRIPSEVDNR 234 (316)
Q Consensus 157 ~~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~g~~v~--a~~R~~~~~~~r 234 (316)
+|+|+||++||+|+||++++..|+++.++++.+.+.+..++|+|||||+..++|+|++++||+|++ |+.|+|.+||||
T Consensus 156 ~pvVlKp~~Gs~G~gV~~v~~~d~~l~~~~e~~~~~~~~~~ivQeyi~~~~~~~rrivv~~~~~~~~y~~~R~~~~~~~R 235 (318)
T COG0189 156 FPVVLKPLDGSGGRGVFLVEDADPELLSLLETLTQEGRKLIIVQEYIPKAKRDDRRVLVGGGEVVAIYALARIPASGDFR 235 (318)
T ss_pred CCEEEEECCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEEEECCEEEEEEEEECCCCCCCCE
T ss_conf 98899647888866559943776569999998634556429862034767787399999899998987120047777520
Q ss_pred CCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEE----CCEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 000014731110077899999999999999849879999511----7878898368830378899751999899999999
Q gi|254780696|r 235 SNIHAGGKAELTKLTKIDLDICKRIGESLRERGLFFTGIDVI----GDYITEINVTSPTCIREIHRNGGENVASLFWDGI 310 (316)
Q Consensus 235 ~Nl~~Gg~~~~~~lt~~~~~i~~~~~~~L~~~gl~~~GiDii----g~~i~EvNvtsP~g~~~~~~~~~~~i~~~i~d~i 310 (316)
+|+|+||+++++++|++++++|.++++.| |+.|+|||++ |.||+|||+ ||+|..++++++|.++++.+++++
T Consensus 236 ~N~a~Gg~~e~~~l~~e~~elA~kaa~~l---Gl~~~GVDiie~~~g~~V~EVN~-sP~~~~~i~~~~g~~~~~~~~~~i 311 (318)
T COG0189 236 SNLARGGRAEPCELTEEEEELAVKAAPAL---GLGLVGVDIIEDKDGLYVTEVNV-SPTGKGEIERVTGVNIAGLIIDAI 311 (318)
T ss_pred EECCCCCEECCCCCCHHHHHHHHHHHHHH---CCCEEEEEEEEECCCEEEEEEEC-CCCCCCCHHHCCCCCHHHHHHHHH
T ss_conf 10115752045369999999999999974---89479999997089629999868-965235214306976799999999
Q ss_pred HHHHC
Q ss_conf 88633
Q gi|254780696|r 311 EKIKE 315 (316)
Q Consensus 311 e~~~~ 315 (316)
|+.++
T Consensus 312 e~~~~ 316 (318)
T COG0189 312 EKFVR 316 (318)
T ss_pred HHHHH
T ss_conf 99974
No 5
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=100.00 E-value=0 Score=444.30 Aligned_cols=282 Identities=22% Similarity=0.293 Sum_probs=247.4
Q ss_pred CEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHHHCC
Q ss_conf 31899709988848476467999999998898899995412489998999999999980777412650464435210063
Q gi|254780696|r 5 RNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQMD 84 (316)
Q Consensus 5 ~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~~fD 84 (316)
|||+++ +-+++-+||.+|++||++|||++..++|.++++.-+ ......+..+ ..|.+||
T Consensus 1 mki~iL-----s~~~~~yst~RL~eaa~~rGh~v~vidp~~~~~~i~------------~~~~~v~~~g----~~L~~~D 59 (300)
T PRK10446 1 MKIAIL-----SRDGTLYSCKRLREAAIQRGHLVEILDPLSCYMNIN------------PAASSIHYKG----RKLPHFD 59 (300)
T ss_pred CEEEEE-----ECCCCCCHHHHHHHHHHHCCCEEEEEEHHHCEEEEC------------CCCCEEEECC----EECCCCC
T ss_conf 979999-----369976079999999998799599961489189824------------8986499898----0868788
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCEEECCHHHHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHHHHHHH-H-H
Q ss_conf 668832886224799999999862358504117488752565034334543----044310003724556888852-1-4
Q gi|254780696|r 85 VILIRQDPPFNMHYITSTYLLEKINPETLIVNNPFWIRNSPEKIFVTEFSE----LMPPTLISRDITQITRFYLEM-K-D 158 (316)
Q Consensus 85 ~i~iR~dPp~d~~yi~~~~~Le~~~~~~~viN~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~~~-~-~ 158 (316)
+|++|.+|+++..+.+.++.||.+ |+.|+|+|.+|++|+||++++++.. ++|+|.++++++++.+++++. + |
T Consensus 60 avipR~g~~~t~~~~~vLr~lE~~--Gv~viN~~~aI~~~~DKl~t~qlL~~~gip~P~T~~~~~~~~~~~~i~~~gg~P 137 (300)
T PRK10446 60 AVIPRIGTAITFYGTAALRQFEML--GSYPLNESVAIARARDKLRSMQLLARQGIDLPVTGIAHSPDDTSDLIDMVGGAP 137 (300)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHC--CCCEECCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCC
T ss_conf 899826777455899999999988--991864899999857699999999875979998898369999999999808997
Q ss_pred HHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEECCEEEEEEEEECCCCCCCCCCC
Q ss_conf 33111688543446874488711588999998400133400210534456826999989988632122045686000000
Q gi|254780696|r 159 IIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGKPVGAVNRIPSEVDNRSNIH 238 (316)
Q Consensus 159 vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~g~~v~a~~R~~~~~~~r~Nl~ 238 (316)
+|+||++|++|+||++++ +...+.++++.+... +.++++||||++..++|+||+|+||++++||.|.|++||||+|+|
T Consensus 138 vViKpl~Gs~G~GV~l~e-~~~~~~~i~~~~~~~-~~~~~iQeyI~~~~g~D~Rv~vvgg~vvaam~R~~~~g~~rtN~~ 215 (300)
T PRK10446 138 LVVKLVEGTQGIGVVLAE-TRQAAESVIDAFRGL-NAHILVQEYIKEAQGCDIRCLVVGDEVVAAIERRAKEGDFRSNLH 215 (300)
T ss_pred EEEEECCCCCCCCEEEEE-CHHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCEEEEEECCEEHHHEEEECCCCCEEEEEE
T ss_conf 899967898860369973-789999999988622-873775220255579867999999862443899737883477770
Q ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEE----CCEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 14731110077899999999999999849879999511----78788983688303788997519998999999998863
Q gi|254780696|r 239 AGGKAELTKLTKIDLDICKRIGESLRERGLFFTGIDVI----GDYITEINVTSPTCIREIHRNGGENVASLFWDGIEKIK 314 (316)
Q Consensus 239 ~Gg~~~~~~lt~~~~~i~~~~~~~L~~~gl~~~GiDii----g~~i~EvNvtsP~g~~~~~~~~~~~i~~~i~d~ie~~~ 314 (316)
+||++++++++++++++|.++++.+ |+.|||||++ |+||+||| +|| ||+++++++|+|+|+.|+||+||..
T Consensus 216 ~Gg~~~~~~l~~e~~~la~~a~~~l---gl~~~GVDii~~~~g~~v~EVN-~~P-g~~gi~~~tgvdiA~~Ii~~ie~~~ 290 (300)
T PRK10446 216 RGGAASVASITPQEREIAIKAARTM---ALDVAGVDILRANRGPLVMEVN-ASP-GLEGIEKTTGIDIAGKMIRWIERHA 290 (300)
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHH---CCCEEEEEEEEECCCCEEEEEC-CCH-HHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 3977653289999999999999986---9968999998828998899993-874-2788988759898999999999767
Q ss_pred CC
Q ss_conf 39
Q gi|254780696|r 315 ET 316 (316)
Q Consensus 315 ~~ 316 (316)
.+
T Consensus 291 ~~ 292 (300)
T PRK10446 291 TT 292 (300)
T ss_pred CC
T ss_conf 84
No 6
>pfam02955 GSH-S_ATP Prokaryotic glutathione synthetase, ATP-grasp domain.
Probab=100.00 E-value=0 Score=393.80 Aligned_cols=176 Identities=56% Similarity=0.945 Sum_probs=172.5
Q ss_pred CHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCC
Q ss_conf 50343345430443100037245568888521433111688543446874488711588999998400133400210534
Q gi|254780696|r 126 EKIFVTEFSELMPPTLISRDITQITRFYLEMKDIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQ 205 (316)
Q Consensus 126 eKl~~~~~~~~~P~T~vt~~~~~~~~f~~~~~~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~ 205 (316)
||||+++||+++|+|++|+|++++.+|+++++++|+||++||+|+||++++..++++..+++.+...++.++++|||||+
T Consensus 1 eKl~~~~f~~~~P~T~vt~~~~~i~~f~~~~g~vVvKPl~Gs~G~GV~~i~~~~~~~~~i~e~~~~~~~~~ii~QeyI~~ 80 (176)
T pfam02955 1 EKLFTLSFPELIPPTLVTRDKEEIRAFLEEHGDIILKPLDGMGGAGVFRIKKDDPNLNVILETLTQYGRRPVMAQRYLPE 80 (176)
T ss_pred CEEECCCCCCCCCCEEEECCHHHHHHHHHHCCCEEEEECCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 91331224040869479889999999999779899995788887675995478355899999998468883986431376
Q ss_pred CCCCCEEEEEECCEEEEEEEEECCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEECCEEEEEEC
Q ss_conf 45682699998998863212204568600000014731110077899999999999999849879999511787889836
Q gi|254780696|r 206 IRDGDKRILLLNGKPVGAVNRIPSEVDNRSNIHAGGKAELTKLTKIDLDICKRIGESLRERGLFFTGIDVIGDYITEINV 285 (316)
Q Consensus 206 ~~~gD~Rv~vi~g~~v~a~~R~~~~~~~r~Nl~~Gg~~~~~~lt~~~~~i~~~~~~~L~~~gl~~~GiDiig~~i~EvNv 285 (316)
+.+||+||+|+||+++|||+|+|++||||+|+|+||++++++||++++++|.++++.|++.||+|||||+||+||+||||
T Consensus 81 ~~~gD~Rv~vi~g~~v~a~~R~~~~g~~r~Nl~~Gg~~~~~~lt~~~~~ia~~~a~~l~~~Gl~faGVDiig~~l~EVNv 160 (176)
T pfam02955 81 IKEGDKRILLVNGEPIGALARIPAEGEFRGNLAAGGRGEATELTERDREICETIGPKLKERGLFFVGLDVIGDYLTEINV 160 (176)
T ss_pred CCCCCEEEEEECCEEEEEEEEECCCCCCEEEECCCCEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCEEEEEEC
T ss_conf 78997699999999989999854798521440269800057899999999999999999869979999984790889958
Q ss_pred CCCHHHHHHHHHCCCC
Q ss_conf 8830378899751999
Q gi|254780696|r 286 TSPTCIREIHRNGGEN 301 (316)
Q Consensus 286 tsP~g~~~~~~~~~~~ 301 (316)
|||||++++++++|+|
T Consensus 161 tsP~g~~~i~~~~g~n 176 (176)
T pfam02955 161 TSPTGIREIERLTGVS 176 (176)
T ss_pred CCCHHHHHHHHHHCCC
T ss_conf 8907899999974979
No 7
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family; InterPro: IPR004666 Escherichia coli RimK adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6. Mutation of the Glu-Glu terminus to Lys-Glu blocked addition. S6 has the C-terminal sequence Glu-Glu in few species, suggesting the homolog of rimK may have a function other than S6 modification in those species. However, most species having a member of this protein subfamily do not have an S6 homolog ending in Glu-Glu.; GO: 0006464 protein modification process.
Probab=100.00 E-value=0 Score=372.46 Aligned_cols=287 Identities=22% Similarity=0.335 Sum_probs=241.2
Q ss_pred EEEEEECC-HHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEE-CCCCCCCHHHC
Q ss_conf 18997099-88848476467999999998898899995412489998999999999980777412650-46443521006
Q gi|254780696|r 6 NIAIQMNH-ISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSL-GEEKIIDLSQM 83 (316)
Q Consensus 6 kI~fimDp-i~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~-~~~~~~~L~~f 83 (316)
||+|+.|+ +..+-+...+.-+|.++|.++||++-++.+.++.+.=+++-+. .+ +|+. .+....-+.++
T Consensus 1 kl~~l~~~~~~~~~~r~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~P~~~--~I--------~~~~~~~~~~~~~~~~ 70 (321)
T TIGR00768 1 KLAILYDIAIREIYIRLYDEKMLKEAAEERGIDYKVVTPPEIVLTFNQPAAF--SI--------FYKEPRKNKELALAEL 70 (321)
T ss_pred CCEEEEEHHHCCCCCCHHHHHHHHHHHHHHCCCEEEECCHHHEECCCCCCCC--EE--------ECCCCCCCCHHHHCCC
T ss_conf 9247740420632278789999999999717953676041220036888510--01--------1145410010231178
Q ss_pred CEEEEEC-CCCCCH-HHHHHHHHHHHHCCCCEEECCHHHHHHCCCHHHHHHHHH----HCCCCEEEC--------CHHHH
Q ss_conf 3668832-886224-799999999862358504117488752565034334543----044310003--------72455
Q gi|254780696|r 84 DVILIRQ-DPPFNM-HYITSTYLLEKINPETLIVNNPFWIRNSPEKIFVTEFSE----LMPPTLISR--------DITQI 149 (316)
Q Consensus 84 D~i~iR~-dPp~d~-~yi~~~~~Le~~~~~~~viN~p~~i~~~~eKl~~~~~~~----~~P~T~vt~--------~~~~~ 149 (316)
|++++|. .|.+.+ ..++++..||.. |+.+||+|.+|.+|.||++++.+.. ++|+|.++. |++++
T Consensus 71 d~~~~R~~TPWv~~~~~~~~~r~lE~~--G~~~~N~s~aI~~a~dK~~s~~~L~~~G~P~P~~~~~~PqnfDReW~~~~a 148 (321)
T TIGR00768 71 DVVIVRIGTPWVSSFRGLAVLRALESL--GVPVINSSQAILNAGDKVLSHQLLAKAGVPLPRTGVAGPQNFDREWSPEEA 148 (321)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHC--CCEECCCHHHHHHCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHH
T ss_conf 889983899751102688999999858--963107069986214658999999958689873357366322435898899
Q ss_pred HHHHHHHH----HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHC---CCCCCEEECCC--CCCCCCEEEEEECCEE
Q ss_conf 68888521----433111688543446874488711588999998400---13340021053--4456826999989988
Q gi|254780696|r 150 TRFYLEMK----DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKY---PEPLMIQSYLP--QIRDGDKRILLLNGKP 220 (316)
Q Consensus 150 ~~f~~~~~----~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~---~~~ii~Qefi~--~~~~gD~Rv~vi~g~~ 220 (316)
..++++.| |+|+||+.||+|++|+++.. ...+..+++.+-... ...+++||||+ +..+.|+|++||||++
T Consensus 149 ~~~ie~~g~lEfP~V~Kp~~GS~G~~V~l~~D-~~~~~~~~e~~~~~~~~~~~~~~~QeyI~Pv~~~grDIR~fVvGd~v 227 (321)
T TIGR00768 149 LKLIEEIGQLEFPVVLKPVFGSWGRLVSLARD-KQAAETLLEHFEQLNGPQYKVFLVQEYIKPVKPGGRDIRVFVVGDEV 227 (321)
T ss_pred HHHHHHHCCCCCCEEEECCCCCCCCEEEEEEC-HHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCEEEEEEECCCE
T ss_conf 99998731764245871785635426898506-78999999999721883323578872011325789318999988920
Q ss_pred EEEEEEECCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEE---C-----CE-EEEEECCCCHHH
Q ss_conf 63212204568600000014731110077899999999999999849879999511---7-----87-889836883037
Q gi|254780696|r 221 VGAVNRIPSEVDNRSNIHAGGKAELTKLTKIDLDICKRIGESLRERGLFFTGIDVI---G-----DY-ITEINVTSPTCI 291 (316)
Q Consensus 221 v~a~~R~~~~~~~r~Nl~~Gg~~~~~~lt~~~~~i~~~~~~~L~~~gl~~~GiDii---g-----~~-i~EvNvtsP~g~ 291 (316)
+|||.|...+++||||+|+||++++|+||+++++||.++++.| |+.+|||||+ . ++ |+|||. || +|
T Consensus 228 ~aA~~R~~~~~~w~~N~a~GG~a~~~~l~~e~~~LA~ka~~a~---g~~v~giDlle~~~r~dw~GL~V~EVN~-~~-~f 302 (321)
T TIGR00768 228 VAAIYRIITSGHWRTNLARGGKAEPCSLTEEIEELAIKAAKAL---GLDVAGIDLLESKDRDDWGGLLVLEVNA-NP-EF 302 (321)
T ss_pred EEEEEECCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH---CCCEEEEEEEECCCCCCCCCCEEEEECC-CC-CC
T ss_conf 1333541788302435543882124525889999999999997---6834899776626854257837999849-97-70
Q ss_pred HHHHHHCCCCHHHHHHHHH
Q ss_conf 8899751999899999999
Q gi|254780696|r 292 REIHRNGGENVASLFWDGI 310 (316)
Q Consensus 292 ~~~~~~~~~~i~~~i~d~i 310 (316)
.++.+.||+|||+.++||+
T Consensus 303 ~~~~~~tgvniA~~l~~yi 321 (321)
T TIGR00768 303 KNSVKTTGVNIAGKLLDYI 321 (321)
T ss_pred CCCEEECCCCHHHHHHHHC
T ss_conf 0111111677689999719
No 8
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX; InterPro: IPR011870 The family of proteins found in this family include the characterised LysX from Thermus thermophilus which is part of a well-organised lysine biosynthesis gene cluster . LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this family contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterised in Escherichia coli, and acts by ATP-dependent condensation of S6 with glutamate residues .; GO: 0003824 catalytic activity, 0005524 ATP binding, 0009085 lysine biosynthetic process.
Probab=100.00 E-value=1.1e-42 Score=300.17 Aligned_cols=255 Identities=25% Similarity=0.336 Sum_probs=211.9
Q ss_pred HHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHHHCCEEEEECCCCCC-HHHHHHHHH
Q ss_conf 9999999889889999541248999899999999998077741265046443521006366883288622-479999999
Q gi|254780696|r 26 AIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQMDVILIRQDPPFN-MHYITSTYL 104 (316)
Q Consensus 26 ~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~~fD~i~iR~dPp~d-~~yi~~~~~ 104 (316)
+|++|+.+||.++-.+...+..+--| + .-...+.+.|+.++|. +. .+.|++..+
T Consensus 14 mL~e~l~~lg~~v~~i~~~~~~~~~~------------d----------~~i~~~~~~dv~i~R~---VS~~R~L~~a~~ 68 (289)
T TIGR02144 14 MLLEELEKLGLQVRVIYVPELALPFG------------D----------LGIKELEDLDVAIIRN---VSQSRALYSAFL 68 (289)
T ss_pred HHHHHHHHHCCCCEEEECCCEEECCC------------C----------CCCCHHCCCCEEEECH---HHHHHHHHHHHH
T ss_conf 99999987289732662034022078------------8----------5630003755689830---345679999999
Q ss_pred HHHHCCCCEEECCHHHHHHCCCHHHHHH-HHH---HCCCCEEECCHHHHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCC
Q ss_conf 9862358504117488752565034334-543---0443100037245568888521-4331116885434468744887
Q gi|254780696|r 105 LEKINPETLIVNNPFWIRNSPEKIFVTE-FSE---LMPPTLISRDITQITRFYLEMK-DIIIKPLYGNGGTGVFRITLGD 179 (316)
Q Consensus 105 Le~~~~~~~viN~p~~i~~~~eKl~~~~-~~~---~~P~T~vt~~~~~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~ 179 (316)
||.+ |+.+||++.+|..|.||++|.. +.+ |+|+|+++-|++.+....++.| |+|+||..||||+=|-+++..+
T Consensus 69 ~E~~--G~~~iN~~~~i~~cgDK~~T~~~L~~~gvP~P~t~~a~d~~~A~~~~e~lGYPvV~KP~~GSWGRlV~~~~d~~ 146 (289)
T TIGR02144 69 LEAV--GVPTINSSHAIIACGDKIFTTLKLAKAGVPTPRTYIAFDREAALKAAEELGYPVVLKPVIGSWGRLVSKIRDKD 146 (289)
T ss_pred HHHC--CCEEECCHHHHHHHCCHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCHH
T ss_conf 9848--97152775898750461889999996678898358982868999999970898897088884378876403788
Q ss_pred CCHHHHHHH---HHHHCCCCCCEEECCCCCCCCCEEEEEECCEEEEEEEEECCCCCCCCCCCCCCCEEEEECCHHHHHHH
Q ss_conf 115889999---98400133400210534456826999989988632122045686000000147311100778999999
Q gi|254780696|r 180 RNFSSLIEM---LFEKYPEPLMIQSYLPQIRDGDKRILLLNGKPVGAVNRIPSEVDNRSNIHAGGKAELTKLTKIDLDIC 256 (316)
Q Consensus 180 ~~~~~~~e~---~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~g~~v~a~~R~~~~~~~r~Nl~~Gg~~~~~~lt~~~~~i~ 256 (316)
.+.+++|. +.+....-+++||||... +.|+|++||||+.++|++|....++||||+|+||+|++|+++++.++++
T Consensus 147 -~~~~llEh~e~~~~~~~~~~y~QEfi~KP-gRDIR~fViGd~~~~AIYR~~~P~~W~TNtArGG~A~P~~~~~e~~~La 224 (289)
T TIGR02144 147 -ELESLLEHKEVLGGSQLKLYYVQEFINKP-GRDIRVFVIGDEAIAAIYRYSEPNHWRTNTARGGKAEPCKIDEEVEELA 224 (289)
T ss_pred -HHHHHHHHHHHHCCCCCCEEEEEEEECCC-CCEEEEEEECCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCCHHHHHHH
T ss_conf -98899999998679763337999887188-9608999997973167883388530255630588447887687689999
Q ss_pred HHHHHHHHHCCCEEEEEEEE---------CCE-EEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 99999999849879999511---------787-88983688303788997519998999999998863
Q gi|254780696|r 257 KRIGESLRERGLFFTGIDVI---------GDY-ITEINVTSPTCIREIHRNGGENVASLFWDGIEKIK 314 (316)
Q Consensus 257 ~~~~~~L~~~gl~~~GiDii---------g~~-i~EvNvtsP~g~~~~~~~~~~~i~~~i~d~ie~~~ 314 (316)
.++++.+ |-.|.||||+ |+| |.||| -+| =|+...++||+|||+.++|++=+..
T Consensus 225 ~kA~~av---gg~~~~iDi~Es~~rqndW~GlLV~EVN-~~~-EFKN~~rvTGvNva~~l~~yav~~~ 287 (289)
T TIGR02144 225 VKAAEAV---GGEVVGIDIVESKRRQNDWGGLLVNEVN-GVP-EFKNTVRVTGVNVAEKLVEYAVELV 287 (289)
T ss_pred HHHHHHH---CCEEEEEEEEECCCCCCCCCCEEEEEEC-CCC-CCCCCEEECCCCHHHHHHHHHHHHH
T ss_conf 9999997---8827899886433445443786897356-897-7278577747453789999999984
No 9
>pfam02951 GSH-S_N Prokaryotic glutathione synthetase, N-terminal domain.
Probab=100.00 E-value=7.7e-40 Score=281.53 Aligned_cols=118 Identities=44% Similarity=0.812 Sum_probs=115.3
Q ss_pred CEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHHHCC
Q ss_conf 31899709988848476467999999998898899995412489998999999999980777412650464435210063
Q gi|254780696|r 5 RNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQMD 84 (316)
Q Consensus 5 ~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~~fD 84 (316)
|||||||||++++||+||||++||+|||+|||+||||+|+||++++|+++|.++.+++.++...||++++++.++|++||
T Consensus 1 Mki~fimDpie~l~~~kDTT~~lm~eaq~rg~~v~~~~~~dL~~~~~~v~a~~~~v~~~~~~~~~~~~~~~~~~~L~~fd 80 (119)
T pfam02951 1 MKLAFVMDPIESINIKKDSTFAMMLEAQRRGHELFYYEPGDLSLRGGRVRARARPLTVRDDPGDWYELGEEERLPLADFD 80 (119)
T ss_pred CEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEECCCCEEEECCEEEEEEEEEEEECCCCCCEEECCCEEECHHHCC
T ss_conf 96999957989878788719999999998799799980032899899999999999995588874685362897247898
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCC-CCEEECCHHHHH
Q ss_conf 66883288622479999999986235-850411748875
Q gi|254780696|r 85 VILIRQDPPFNMHYITSTYLLEKINP-ETLIVNNPFWIR 122 (316)
Q Consensus 85 ~i~iR~dPp~d~~yi~~~~~Le~~~~-~~~viN~p~~i~ 122 (316)
+||||+|||||++||++||+||.+++ |++|||+|.|||
T Consensus 81 ~v~mRkDPPfD~~Yi~~T~lLe~~~~~g~~ViN~P~~lR 119 (119)
T pfam02951 81 VILMRKDPPFDMEYIYATYLLERAERAGTLVVNDPQSLR 119 (119)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCEEECCCHHCC
T ss_conf 999954999888999999999877557988982824348
No 10
>pfam08443 RimK RimK-like ATP-grasp domain. This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK.
Probab=100.00 E-value=1.9e-35 Score=252.81 Aligned_cols=180 Identities=26% Similarity=0.478 Sum_probs=159.1
Q ss_pred CCCHHHHHHHHH----HCCCCEEECCHHHHHHHHHHH-H-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 565034334543----044310003724556888852-1-4331116885434468744887115889999984001334
Q gi|254780696|r 124 SPEKIFVTEFSE----LMPPTLISRDITQITRFYLEM-K-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPL 197 (316)
Q Consensus 124 ~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~~~-~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~i 197 (316)
+.||+.+.++.. ++|+|.++++++++.+|+++. + |+|+||.+|++|.||+++.. ...+..+++.+. ....++
T Consensus 1 a~DK~~tk~ll~~~Gip~P~~~~~~~~~~~~~~~~~~~g~PvVvKP~~g~~g~gV~~v~~-~~el~~~~~~~~-~~~~~v 78 (190)
T pfam08443 1 ARDKAKSHQLLAKHGIPVPNTGLAWSPEDAEKFIEQIKGFPVVVKSVFGSQGIGVFLAED-EQSLEQLLEAFK-WLKNQI 78 (190)
T ss_pred CCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEEC-HHHHHHHHHHHH-HCCCCE
T ss_conf 978899999999879797998998899999999998089838996788999845588606-377778888886-348737
Q ss_pred CEEECCCCCCCCCEEEEEECCEEEEEEEEECCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEE-
Q ss_conf 0021053445682699998998863212204568600000014731110077899999999999999849879999511-
Q gi|254780696|r 198 MIQSYLPQIRDGDKRILLLNGKPVGAVNRIPSEVDNRSNIHAGGKAELTKLTKIDLDICKRIGESLRERGLFFTGIDVI- 276 (316)
Q Consensus 198 i~Qefi~~~~~gD~Rv~vi~g~~v~a~~R~~~~~~~r~Nl~~Gg~~~~~~lt~~~~~i~~~~~~~L~~~gl~~~GiDii- 276 (316)
++||||+...++|+|++++||++++++.|.+..++||+|+++||..++++|+++.+++|.++++.| |+.++|||++
T Consensus 79 lvqefI~~~~~~dirv~vi~~~~~~~~~~~~~~~~~~~n~~~g~~~~~~~l~~e~~e~a~~a~~al---gl~~~gVD~~~ 155 (190)
T pfam08443 79 LVQEFIAEAGNRDIRCLVVGGEVVGAIHRQSNEGDFRTNLHRGGVAEPYQLSQEEEEIAIKAAQAM---GLDVLGVDIFR 155 (190)
T ss_pred EEEEEEECCCCCEEEEEEECCCEEEEEEEECCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHH---CCCEEEEEEEE
T ss_conf 755566047885489999606336789997466762143246862458766889999999999973---89979999999
Q ss_pred ---CCEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf ---7878898368830378899751999899999999
Q gi|254780696|r 277 ---GDYITEINVTSPTCIREIHRNGGENVASLFWDGI 310 (316)
Q Consensus 277 ---g~~i~EvNvtsP~g~~~~~~~~~~~i~~~i~d~i 310 (316)
|.|++||| |+| ||+++++++|+|+++.|+|||
T Consensus 156 ~~~g~~vlEvN-~~P-g~~~~~~~~g~~i~~~i~~~i 190 (190)
T pfam08443 156 SKRGLLVCEVN-SSP-GLKGIERTTGINIAIKLIEYI 190 (190)
T ss_pred ECCCEEEEEEC-CCC-CCHHHHHHHCCCHHHHHHHHC
T ss_conf 79967999966-984-604789887949999998449
No 11
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.91 E-value=3.6e-22 Score=165.69 Aligned_cols=182 Identities=20% Similarity=0.349 Sum_probs=145.4
Q ss_pred CHHHHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCC-CCCHHHHHHHHHH
Q ss_conf 7488752565034334543----0443100037245568888521433111688543446874488-7115889999984
Q gi|254780696|r 117 NPFWIRNSPEKIFVTEFSE----LMPPTLISRDITQITRFYLEMKDIIIKPLYGNGGTGVFRITLG-DRNFSSLIEMLFE 191 (316)
Q Consensus 117 ~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~~~~~vViKPl~g~~G~gV~~i~~~-~~~~~~~~e~~~~ 191 (316)
+.-++-.|.||-.+-++.+ ..|.-.+..+.++..+|+++||+||+||++|.+|+||. ++-. .+.+...++...
T Consensus 288 SAvAms~c~DK~lT~rll~~AG~~VP~~~~~~~~~~~~~fl~~~G~VVVKP~dGnqGrGVt-vnl~t~eev~~A~~~A~- 365 (547)
T TIGR03103 288 SAVAMSLCDDKRLTRRLVSEAGLQVPEQQLAGNGEAVEAFLAEHGAVVVKPVRGEQGKGIS-VDVRTPDDLEAAIAKAR- 365 (547)
T ss_pred HHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCEE-ECCCCHHHHHHHHHHHH-
T ss_conf 8999887404999999999739989997456998999999987399997768788886158-72599999999999999-
Q ss_pred HCCCCCCEEECCCCCCCCCEEEEEECCEEEEEEEEECCC--CCC------------------------------------
Q ss_conf 001334002105344568269999899886321220456--860------------------------------------
Q gi|254780696|r 192 KYPEPLMIQSYLPQIRDGDKRILLLNGKPVGAVNRIPSE--VDN------------------------------------ 233 (316)
Q Consensus 192 ~~~~~ii~Qefi~~~~~gD~Rv~vi~g~~v~a~~R~~~~--~~~------------------------------------ 233 (316)
.+...+++.+|++ +.|+|++||||++++|..|+|.. ||=
T Consensus 366 ~~~~~VIVE~fi~---G~D~RlLVIggkVVAAA~R~Pa~VvGDG~sTI~eLIe~qnrrr~~~~g~esrI~lD~~t~~~L~ 442 (547)
T TIGR03103 366 QFCDRVLLERYVP---GEDLRLVVIDFEVVAAAVRRPPEVIGDGRSSIRDLIEKQSRRRAAATGGESRIPLDAETERCLA 442 (547)
T ss_pred HHCCCEEEEEEEC---CCCEEEEEECCEEEEEECCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCEECCCHHHHHHHH
T ss_conf 7599579998406---9716999999999999814796798486620999984305775567899753346999999999
Q ss_pred --------------------CCCCCCCCCEEEE--ECCHHHHHHHHHHHHHHHHCCCEEEEEEEE-------CCEEEEEE
Q ss_conf --------------------0000014731110--077899999999999999849879999511-------78788983
Q gi|254780696|r 234 --------------------RSNIHAGGKAELT--KLTKIDLDICKRIGESLRERGLFFTGIDVI-------GDYITEIN 284 (316)
Q Consensus 234 --------------------r~Nl~~Gg~~~~~--~lt~~~~~i~~~~~~~L~~~gl~~~GiDii-------g~~i~EvN 284 (316)
.+|+|.||++.-+ ++.++..++|.+++..+ ||.+||||+| +.-++|+|
T Consensus 443 ~qG~tldSVp~~Ge~V~LR~nANLSTGGtaiDVTD~VHPe~~~~A~~AAraI---GLdIaGIDliv~DIs~P~~vIIEvN 519 (547)
T TIGR03103 443 EAGLDLDDVLPEGQRLRVRRTANLHTGGTIHDVTEQLHPDLREAAERAARAL---DIPVVGIDFLVPDVTGPDYVIIEAN 519 (547)
T ss_pred HCCCCCCCCCCCCCEEEEECCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHH---CCCEEEEEEEECCCCCCCEEEEEEC
T ss_conf 8499812258889999994266026898516145676989999999999973---9985568998426899981899977
Q ss_pred CCCCHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 688303788997519998999999998
Q gi|254780696|r 285 VTSPTCIREIHRNGGENVASLFWDGIE 311 (316)
Q Consensus 285 vtsP~g~~~~~~~~~~~i~~~i~d~ie 311 (316)
. .| |+..= --.+.|+.|+|.|-
T Consensus 520 a-~P-GL~nH---ePqptae~fvD~LF 541 (547)
T TIGR03103 520 E-RP-GLANH---EPQPTAERFIDLLF 541 (547)
T ss_pred C-CC-CCCCC---CCCCHHHHHHHHHC
T ss_conf 8-96-50227---99716888888647
No 12
>TIGR02068 cya_phycin_syn cyanophycin synthetase; InterPro: IPR011810 Cyanophycin is an insoluble storage polymer for carbon, nitrogen, and energy, found in most Cyanobacteria. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine. The polymer is made by this enzyme, cyanophycin synthetase, and degraded by cyanophycinase. Heterologously expressed cyanophycin synthetase in Escherichia coli produces a closely related, water-soluble polymer with some Arg replaced by Lys. It is unclear whether enzymes that produce soluble cyanophycin-like polymers in vivo in non-Cyanobacterial species should be designated as cyanophycin synthetase itself or as a related enzyme. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions .; GO: 0005524 ATP binding, 0016874 ligase activity, 0009059 macromolecule biosynthetic process.
Probab=99.85 E-value=1.5e-20 Score=155.15 Aligned_cols=181 Identities=24% Similarity=0.407 Sum_probs=141.5
Q ss_pred HHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHHHHHHHH--HHHHHCCCCCCCCCEEEECCC-CCCHHHHHHHHHHH
Q ss_conf 8752565034334543----0443100037245568888521--433111688543446874488-71158899999840
Q gi|254780696|r 120 WIRNSPEKIFVTEFSE----LMPPTLISRDITQITRFYLEMK--DIIIKPLYGNGGTGVFRITLG-DRNFSSLIEMLFEK 192 (316)
Q Consensus 120 ~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~~~~--~vViKPl~g~~G~gV~~i~~~-~~~~~~~~e~~~~~ 192 (316)
|...+.||-.|=.+++ |.|.--+..+.+++.+.++..| |||+||++|++|+||+ ++-. -+...+.++...+
T Consensus 212 av~iA~DK~lTK~iL~~~GvPVP~G~~~~~~~~a~~aa~~~GG~PvViKP~DGn~GrGv~-~ni~~r~e~e~AY~~A~~- 289 (876)
T TIGR02068 212 AVEIACDKDLTKKILKAAGVPVPEGTVVQSAEEAWEAAEDLGGYPVVIKPYDGNHGRGVT-INIETRDEIESAYEAAKE- 289 (876)
T ss_pred EHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEE-ECCCCHHHHHHHHHHHHH-
T ss_conf 012223637899999847898888736677899999999718996899517799874378-407774889999999986-
Q ss_pred CC--CCCCEEECCCCCCCCCEEEEEECCEEEEEEEEECCC--CC--C---------------------------------
Q ss_conf 01--334002105344568269999899886321220456--86--0---------------------------------
Q gi|254780696|r 193 YP--EPLMIQSYLPQIRDGDKRILLLNGKPVGAVNRIPSE--VD--N--------------------------------- 233 (316)
Q Consensus 193 ~~--~~ii~Qefi~~~~~gD~Rv~vi~g~~v~a~~R~~~~--~~--~--------------------------------- 233 (316)
.+ ..+|+.+|+ .+.|.|++|||+++|++-.|.|+. || .
T Consensus 290 ~Sk~~~ViVEr~i---~G~dhRlLVVg~k~VAvA~R~PA~ViGDG~hTi~eLiG~~~N~DP~RG~Gh~~~Ltki~~D~~~ 366 (876)
T TIGR02068 290 ESKTSEVIVERYI---KGRDHRLLVVGGKLVAVAERVPAHVIGDGVHTIEELIGEQINKDPLRGDGHDKPLTKIRLDSVA 366 (876)
T ss_pred CCCCCEEEEEEEE---CCCCEEEEEECCEEEEEECCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHH
T ss_conf 0786606898764---2762389999896899861888868838720076640576467778888667788834330799
Q ss_pred -------------------------CCCCCCCCCEEEE--ECCHHHHHHHHHHHHHHHHCCCEEEEEEEE----------
Q ss_conf -------------------------0000014731110--077899999999999999849879999511----------
Q gi|254780696|r 234 -------------------------RSNIHAGGKAELT--KLTKIDLDICKRIGESLRERGLFFTGIDVI---------- 276 (316)
Q Consensus 234 -------------------------r~Nl~~Gg~~~~~--~lt~~~~~i~~~~~~~L~~~gl~~~GiDii---------- 276 (316)
-+|||.||.|.-. ++-|+-.++|..+++.. ||+.||||++
T Consensus 367 ~~~L~kqG~~ldsVp~kG~~V~Lr~~ANLSTGG~A~DrTDeiHP~~~~~a~~aAk~i---GLDiaG~D~v~~di~~PL~~ 443 (876)
T TIGR02068 367 KLVLAKQGLTLDSVPAKGRIVYLRATANLSTGGVAIDRTDEIHPENIAIAVRAAKII---GLDIAGVDVVTEDISKPLRD 443 (876)
T ss_pred HHHHHHCCCCCCCHHHCCCEEEEECCCCCCCCCEEEECCCCCCHHHHHHHHHHHHEE---EEEECCEEECCCCCCCCHHH
T ss_conf 999985497511545409788863247744587316225753845899998752000---00121222003100037454
Q ss_pred -CCEEEEEECCCCHHHHH-HH--HHCCCCHHHHHHHHH
Q ss_conf -78788983688303788-99--751999899999999
Q gi|254780696|r 277 -GDYITEINVTSPTCIRE-IH--RNGGENVASLFWDGI 310 (316)
Q Consensus 277 -g~~i~EvNvtsP~g~~~-~~--~~~~~~i~~~i~d~i 310 (316)
.+-|.|||+ +| ||+- ++ +-.+-|+++.|+|.|
T Consensus 444 ~~G~iVEVNA-aP-GlrMH~~PS~G~pR~Va~Ai~d~L 479 (876)
T TIGR02068 444 TDGAIVEVNA-AP-GLRMHLAPSQGKPRNVAKAIVDML 479 (876)
T ss_pred CCCEEEEEEC-CC-CHHHCCCCCCCCCCCCCHHHHHHC
T ss_conf 5972999856-76-634446777746987102687522
No 13
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=99.85 E-value=2.5e-19 Score=147.13 Aligned_cols=234 Identities=21% Similarity=0.348 Sum_probs=161.1
Q ss_pred CHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEE-EECCCCCCCHHHCCEEEEECCCCCCHHHHHH
Q ss_conf 679999999988988999954124899989999999999807774126-5046443521006366883288622479999
Q gi|254780696|r 23 STFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYY-SLGEEKIIDLSQMDVILIRQDPPFNMHYITS 101 (316)
Q Consensus 23 TT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f-~~~~~~~~~L~~fD~i~iR~dPp~d~~yi~~ 101 (316)
||-+||++|.+||.++-+++.+|=+++ +......-| +-+.. . .+ ..|++.
T Consensus 434 stq~l~~~ai~~Gi~~~vld~~~~fl~------------l~~~~~~eyvk~~~~--T----------s~-----d~y~~~ 484 (753)
T PRK02471 434 STQILLFDAIQRGIQVEILDRQDQFLK------------LQKGDHVEYVKNGNM--T----------SK-----DNYISP 484 (753)
T ss_pred HHHHHHHHHHHCCCEEEEECCHHCEEE------------EEECCEEEEEECCCC--C----------CC-----CHHHHH
T ss_conf 789999999976975688341557654------------422988788630763--6----------65-----215768
Q ss_pred HHHHHHHCCCCEEECCHHHHHHCCCHHHHHHHHHHCCCCEEECCHHHHHHHHHHH--HHHHHHCCCCCCCCCEEEECC--
Q ss_conf 9999862358504117488752565034334543044310003724556888852--143311168854344687448--
Q gi|254780696|r 102 TYLLEKINPETLIVNNPFWIRNSPEKIFVTEFSELMPPTLISRDITQITRFYLEM--KDIIIKPLYGNGGTGVFRITL-- 177 (316)
Q Consensus 102 ~~~Le~~~~~~~viN~p~~i~~~~eKl~~~~~~~~~P~T~vt~~~~~~~~f~~~~--~~vViKPl~g~~G~gV~~i~~-- 177 (316)
+ ++| ++++ -|-...+.--.+|......+.+++.+.+..+ +++|+||..++.|.||..+..
T Consensus 485 l-ime---nk~v------------tK~vl~~~g~~vp~g~~~~~~~~a~~~~~~~~~k~ivvKpkstn~g~gi~if~~~~ 548 (753)
T PRK02471 485 L-IME---NKVV------------TKKILAEAGFPVPAGDEFTSLEEALADYSLFEDKAIVVKPKSTNFGLGISIFKEVA 548 (753)
T ss_pred H-HHH---HHHH------------HHHHHHHCCCCCCCCCEECCHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEECCCC
T ss_conf 9-884---1199------------99999985998999874078999999999867996686807777877659834899
Q ss_pred CCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEECCEEEEEEEEECCC--CC-----------------------
Q ss_conf 87115889999984001334002105344568269999899886321220456--86-----------------------
Q gi|254780696|r 178 GDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGKPVGAVNRIPSE--VD----------------------- 232 (316)
Q Consensus 178 ~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~g~~v~a~~R~~~~--~~----------------------- 232 (316)
+.+++...++...+. ...|++.+|++ +.|+|++||||+++++..|+|+. ||
T Consensus 549 ~~~~~~~A~~~af~~-d~~VlVE~~i~---G~dyR~lVI~~kvvAv~~R~Pa~VvGDG~~TI~eLI~~kN~dp~Rg~~~~ 624 (753)
T PRK02471 549 SLEDYQKALEIAFKE-DSSVLVEEFIV---GTEYRFFVLDGKVEAVLLRVPANVVGDGIHTVRELVAQKNQDPLRGTDHR 624 (753)
T ss_pred CHHHHHHHHHHHHHC-CCEEEEEEEEC---CCCEEEEEECCEEEEEEECCCCEEEECCHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 989999999999856-98189997316---87069999999999999047973771867569999998658855578877
Q ss_pred ------------------------------------CCCCCCCCCCEEEE--ECCHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf ------------------------------------00000014731110--0778999999999999998498799995
Q gi|254780696|r 233 ------------------------------------NRSNIHAGGKAELT--KLTKIDLDICKRIGESLRERGLFFTGID 274 (316)
Q Consensus 233 ------------------------------------~r~Nl~~Gg~~~~~--~lt~~~~~i~~~~~~~L~~~gl~~~GiD 274 (316)
-.+|+|.||.+.-+ ++.++-+++|.++++.+ |+..||||
T Consensus 625 ~pl~~I~ld~~~~~~L~~qg~tldsVp~~ge~V~Lr~naNlSTGG~siDvTD~ihp~~~~~A~~aa~a~---gl~i~GvD 701 (753)
T PRK02471 625 TPLEKIQLGEIEQLMLKQQGLTFDSIPKKGEIVYLRENSNISTGGDSIDMTDDMHDSYKQIAVKAAKAL---GAKICGVD 701 (753)
T ss_pred CCCCEECCCHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHC---CCCEEEEE
T ss_conf 877222369899999998599945528889899983476157898715046677989999999999860---99856899
Q ss_pred EEC------------C-EEEEEECCCCHHHHHH---HHHCCCCHHHHHHHHH
Q ss_conf 117------------8-7889836883037889---9751999899999999
Q gi|254780696|r 275 VIG------------D-YITEINVTSPTCIREI---HRNGGENVASLFWDGI 310 (316)
Q Consensus 275 iig------------~-~i~EvNvtsP~g~~~~---~~~~~~~i~~~i~d~i 310 (316)
+|- + -|+|+|. .| |++.- ..-.+.++++.|+|.+
T Consensus 702 ii~~di~~p~~~~~~~~~IIEvN~-~P-~l~mH~~P~~G~~r~v~~~ild~L 751 (753)
T PRK02471 702 LIIPDLTQPASPENPNYGIIELNF-NP-AMYMHCFPYKGKGRRITDKILDKL 751 (753)
T ss_pred EEECCCCCCCCCCCCCEEEEEECC-CC-CHHHHCCCCCCCCCCHHHHHHHHH
T ss_conf 971577766644579649999668-86-414207877898854389998865
No 14
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=99.73 E-value=6.4e-15 Score=118.17 Aligned_cols=270 Identities=18% Similarity=0.237 Sum_probs=178.3
Q ss_pred CCCCEEEEEECCHHH-CCCCCCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCH
Q ss_conf 653318997099888-4847646799999999889889999541248999899999999998077741265046443521
Q gi|254780696|r 2 KKIRNIAIQMNHIST-VKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDL 80 (316)
Q Consensus 2 kk~~kI~fimDpi~~-i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L 80 (316)
||.|||++++==.+. -+.+--|..+...+..+.||+++.+++.+- .+.. +.-
T Consensus 2 ~~~~kI~vl~GG~S~E~eVSl~S~~~v~~aL~~~~y~v~~id~~~~---------------------~~~~------l~~ 54 (304)
T PRK01372 2 KMFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGED---------------------PAAE------LKE 54 (304)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC---------------------HHHH------HHH
T ss_conf 8777189993678712899999999999988375997999828964---------------------6778------753
Q ss_pred HHCCEEEEECCCCCCHHH-HHHHHHHHHHCCCC-EEECCHHHHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHHHHH
Q ss_conf 006366883288622479-99999998623585-04117488752565034334543----0443100037245568888
Q gi|254780696|r 81 SQMDVILIRQDPPFNMHY-ITSTYLLEKINPET-LIVNNPFWIRNSPEKIFVTEFSE----LMPPTLISRDITQITRFYL 154 (316)
Q Consensus 81 ~~fD~i~iR~dPp~d~~y-i~~~~~Le~~~~~~-~viN~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~ 154 (316)
.++|++|+=.-=++-.++ +-. +||.+ ++ ++-.++.+-..|-||..+-++.. ++|+..+....+......+
T Consensus 55 ~~~D~vf~~lHG~~GEDG~iQg--lLe~~--~IPYtGs~~~asal~mDK~~tK~i~~~~gI~tp~~~~~~~~~~~~~~~~ 130 (304)
T PRK01372 55 LGFDRVFNALHGRGGEDGTIQG--LLELL--GIPYTGSGVLASALAMDKLRTKLVWQAAGLPTAPWVVLTRAEDLLAAID 130 (304)
T ss_pred CCCCEEEEECCCCCCCCHHHHH--HHHHC--CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHH
T ss_conf 3999999906899985649999--99985--9983579989987765389999999986999898499865313999987
Q ss_pred HHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEECCEEEEEEEEECCCC--
Q ss_conf 521-43311168854344687448871158899999840013340021053445682699998998863212204568--
Q gi|254780696|r 155 EMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGKPVGAVNRIPSEV-- 231 (316)
Q Consensus 155 ~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~g~~v~a~~R~~~~~-- 231 (316)
+.+ |+|+||..|....||.++.. ..++...++.... +...+++++||+ +.++-|-|+++++...+.-+|+.+
T Consensus 131 ~l~~P~iVKP~~~GSSiGv~~V~~-~~el~~ai~~a~~-~~~~vLvE~~I~---GrEitv~Vlg~~~lp~~eI~~~~~fy 205 (304)
T PRK01372 131 KLGLPLVVKPAREGSSVGVTKVKE-ADELPAALELAFK-YDDEVLVEKYIK---GRELTVAVLGGKALPVIRIVPPGEFY 205 (304)
T ss_pred HHCCCEEEEECCCCCCCCEEEECC-HHHHHHHHHHHHH-CCCCCEEEEEEC---CEEEEEEEECCCCCCEEEEECCCCCC
T ss_conf 618987997668886665389669-8899999999874-488625450256---56999999899777538994599875
Q ss_pred CCCCCCCCCCCE--EEEECCHHH----HHHHHHHHHHHHHCCC-EEEEEEEE----C-CEEEEEECCCCH-----HHHHH
Q ss_conf 600000014731--110077899----9999999999998498-79999511----7-878898368830-----37889
Q gi|254780696|r 232 DNRSNIHAGGKA--ELTKLTKID----LDICKRIGESLRERGL-FFTGIDVI----G-DYITEINVTSPT-----CIREI 294 (316)
Q Consensus 232 ~~r~Nl~~Gg~~--~~~~lt~~~----~~i~~~~~~~L~~~gl-~~~GiDii----g-~~i~EvNvtsP~-----g~~~~ 294 (316)
|+.+-...|++- .+.+++++. +++|.++.+.| |+ .++-||++ | .|++||| |.|| .+...
T Consensus 206 Dy~aKY~~~~s~~~~Pa~l~~~~~~~i~~~a~~~~~aL---g~~g~aRvDf~~~~~g~~~~lEiN-t~PGmT~~Sl~P~~ 281 (304)
T PRK01372 206 DYEAKYLAGDTQYLCPAGLPAELEAELQALALRAYKAL---GCRGWGRVDFMLDEDGKPYLLEVN-TSPGMTSHSLVPMA 281 (304)
T ss_pred CHHHCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHH---CCCCEEEEEEEEECCCCEEEEEEC-CCCCCCCCCHHHHH
T ss_conf 77661255774110068999999999999999999984---997369889999079978999833-99998741589999
Q ss_pred HHHCCCCHHHHHHHHHH
Q ss_conf 97519998999999998
Q gi|254780696|r 295 HRNGGENVASLFWDGIE 311 (316)
Q Consensus 295 ~~~~~~~i~~~i~d~ie 311 (316)
-+..|++..+.+-.-|+
T Consensus 282 a~~~G~s~~~li~~ii~ 298 (304)
T PRK01372 282 ARAAGISFSELVVWILE 298 (304)
T ss_pred HHHCCCCHHHHHHHHHH
T ss_conf 99819999999999999
No 15
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=99.72 E-value=2.1e-15 Score=121.43 Aligned_cols=273 Identities=18% Similarity=0.253 Sum_probs=166.1
Q ss_pred CCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCC--EEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHH
Q ss_conf 331899709988848476467999999998898--899995412489998999999999980777412650464435210
Q gi|254780696|r 4 IRNIAIQMNHISTVKVKEDSTFAIALEAQVRGY--QIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLS 81 (316)
Q Consensus 4 ~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGh--eV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~ 81 (316)
||||++- + .. .-..++++.++.+. .|..++++..+. +.-+|.-..+-.......|.+.- .+...-.
T Consensus 1 m~nILvt-----~--~G--~~~~ii~~lk~~~~~~~Vi~~D~~~~a~--~~~~aD~~y~~P~~~d~~y~~~l-l~i~~~~ 68 (325)
T PRK12767 1 MMNILVT-----S--AG--RRVQLVKALKKSLLGGKVIGADISPLAP--ALYFADKFYVVPKVTDPNYIDAL-LDICKKE 68 (325)
T ss_pred CCEEEEE-----C--CC--CHHHHHHHHHHCCCCCEEEEECCCCCCC--CHHHCCEEEECCCCCCHHHHHHH-HHHHHHH
T ss_conf 9489998-----6--78--6899999999769985999968998995--34454889987888987899999-9999987
Q ss_pred HCCEEEEECCCCCCHHHHHH-HHHHHHHCCCCE-EECCHHHHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHH-HHH
Q ss_conf 06366883288622479999-999986235850-4117488752565034334543----0443100037245568-888
Q gi|254780696|r 82 QMDVILIRQDPPFNMHYITS-TYLLEKINPETL-IVNNPFWIRNSPEKIFVTEFSE----LMPPTLISRDITQITR-FYL 154 (316)
Q Consensus 82 ~fD~i~iR~dPp~d~~yi~~-~~~Le~~~~~~~-viN~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~-f~~ 154 (316)
+.|+|++-.|+.. ..++. ...|+. .|+. +++++.+++.|.||..+.++.+ ++|+|....+.+++.+ +.+
T Consensus 69 ~id~iiP~~d~El--~~la~~~~~l~~--~gi~v~~~~~e~i~~~~DK~~~~~~l~~~gip~P~t~~~~~~~~~~~~~~~ 144 (325)
T PRK12767 69 NIDALIPLIDPEL--PLLAQHRDEFKE--IGVKVLVSSKEVIEICNDKWLTYEFLKENGINTPKSYLPEDLEDLLKALAE 144 (325)
T ss_pred CCCEEEECCCHHH--HHHHHHHHHHHH--CCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 9999997785026--689999999996--799895697999998549999999999759998982055899999999986
Q ss_pred HHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEE---CCEEEEEEEEECCC
Q ss_conf 521-43311168854344687448871158899999840013340021053445682699998---99886321220456
Q gi|254780696|r 155 EMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLL---NGKPVGAVNRIPSE 230 (316)
Q Consensus 155 ~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi---~g~~v~a~~R~~~~ 230 (316)
+.+ |+|+||.+|+||+|++++.. .+.+...+ .. ..++++||||+ +.++-+-++ +|++++++.|...
T Consensus 145 ~~~fP~vvKP~~g~gs~Gv~~i~~-~~el~~~~----~~-~~~~ivqe~i~---G~E~tvdv~~d~~g~~~~~~~~~r~- 214 (325)
T PRK12767 145 ELGFPLIVKPRDGSGSIGVFKVNN-REELEFLL----RY-NPNLIIQEFIE---GQEYTVDVLCDLNGEVISIVPRKRI- 214 (325)
T ss_pred HCCCCEEEEECCCCCCCCEEEECC-HHHHHHHH----HH-CCCEEEEECCC---CCEEEEEEEEECCCCEEEEEEEEEC-
T ss_conf 569966985356788775499799-99999999----74-89749870348---9889999999789999999998733-
Q ss_pred CCCCCCCCCCCCEEEEE-CCHHHHHHHHHHHHHHHHCCCEEEEEEEE----CCEEEEEECCCCHHHHHHHHHCCCCHHHH
Q ss_conf 86000000147311100-77899999999999999849879999511----78788983688303788997519998999
Q gi|254780696|r 231 VDNRSNIHAGGKAELTK-LTKIDLDICKRIGESLRERGLFFTGIDVI----GDYITEINVTSPTCIREIHRNGGENVASL 305 (316)
Q Consensus 231 ~~~r~Nl~~Gg~~~~~~-lt~~~~~i~~~~~~~L~~~gl~~~GiDii----g~~i~EvNvtsP~g~~~~~~~~~~~i~~~ 305 (316)
-++.|.+..... -.++..++|.++++.|.-.| .+.+|++ +.|++|||- =-+|.-.+....|.|....
T Consensus 215 -----~~~~G~~~~~~~~~~~~l~~~~~~i~~~l~~~G--~~~vq~~~~~g~~~iiEiNP-Rf~g~~~l~~~aG~n~p~~ 286 (325)
T PRK12767 215 -----EVRAGETSKGVTVKNPELFKLAERIAEKLGARG--PLNIQCFVVDGEPYLFEINP-RFGGGYPLRAMAGFNEPDI 286 (325)
T ss_pred -----CCCCCCCCCCEECCHHHHHHHHHHHHHHCCCCC--EEEEEEEEECCEEEEEEEEC-CCCCCHHHHHHHCCCHHHH
T ss_conf -----644578677530579999999999999819854--59999999899699999978-8786467398839899999
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780696|r 306 FWDGI 310 (316)
Q Consensus 306 i~d~i 310 (316)
++..+
T Consensus 287 ~~~~~ 291 (325)
T PRK12767 287 LIRNL 291 (325)
T ss_pred HHHHH
T ss_conf 99998
No 16
>PRK02186 argininosuccinate lyase; Provisional
Probab=99.67 E-value=4.7e-14 Score=112.53 Aligned_cols=280 Identities=14% Similarity=0.101 Sum_probs=174.5
Q ss_pred CCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHHHC
Q ss_conf 33189970998884847646799999999889889999541248999899999999998077741265046443521006
Q gi|254780696|r 4 IRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQM 83 (316)
Q Consensus 4 ~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~~f 83 (316)
.|.|+|+ |+ |.-. |-..+|+.||++|++.++...+--.|. +-.-..+..|.++-+...-.. .....+..+
T Consensus 2 ~~~~vFi----Es-NTTG-TG~l~lk~A~~lG~~pv~LT~dP~rY~-~L~~~~~evI~vDT~d~dal~---~~v~~~~~I 71 (892)
T PRK02186 2 TGIFVFI----ES-NTTG-TGELLLRKALLRGFTPYFLTANRGKYP-FLDAIRVVTISADTSDPDRIH---RFVSSLDGV 71 (892)
T ss_pred CCEEEEE----EE-CCCC-HHHHHHHHHHHCCCEEEEEECCHHHCH-HHHHCCCEEEEECCCCHHHHH---HHHHCCCCC
T ss_conf 7369999----50-7877-279999999974985589836834352-467517659993699999999---997423685
Q ss_pred CEEEEECCCCCCHHHHH-HHHHHHHHCCCCEEECCHHHHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHHHHHHHH-
Q ss_conf 36688328862247999-99999862358504117488752565034334543----0443100037245568888521-
Q gi|254780696|r 84 DVILIRQDPPFNMHYIT-STYLLEKINPETLIVNNPFWIRNSPEKIFVTEFSE----LMPPTLISRDITQITRFYLEMK- 157 (316)
Q Consensus 84 D~i~iR~dPp~d~~yi~-~~~~Le~~~~~~~viN~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~~~~- 157 (316)
..|.- ++.+|+. +-.+-+. -++--|+|.+++.|++|..+-+... ++|.+.+..+.+++.....+.|
T Consensus 72 aGV~s-----~sDyyl~~AA~LA~~---LGLPGp~peAV~~cRdK~~~Rq~L~~aGVp~P~~~lv~~~~e~~~aAa~IGf 143 (892)
T PRK02186 72 AGIMS-----SSEYFIEVASEVARR---LGLPAANTEAIRTCRDKKRLARTLRDHGIDVPRTHALALDAVALDALDGLTY 143 (892)
T ss_pred CEEEE-----CCHHHHHHHHHHHHH---HCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCC
T ss_conf 26987-----405449999999998---1989989999999871999999999669999956883588789999984799
Q ss_pred HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEE--CC--EEEEEEEE-ECCCCC
Q ss_conf 43311168854344687448871158899999840013340021053445682699998--99--88632122-045686
Q gi|254780696|r 158 DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLL--NG--KPVGAVNR-IPSEVD 232 (316)
Q Consensus 158 ~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi--~g--~~v~a~~R-~~~~~~ 232 (316)
|+|+||.+|+|..||. ++.+..++....+.+.+.....+++|||++.. .+-|=.+ +| +++|...+ ....-.
T Consensus 144 PvVVKP~dgSGS~GVr-Lc~s~aEL~e~~~~l~~~r~~~vLVEEFieGp---EYSVEt~s~~G~~~VIGIT~K~l~~~P~ 219 (892)
T PRK02186 144 PVVVKPRMGSGSVGVR-LCASVAEAAAHCAALRRAGTRAALVQAYVEGD---EYSVETLTVARGHQVLGITRKHLGPPPH 219 (892)
T ss_pred CEEECCCCCCCCCCEE-EECCHHHHHHHHHHHHHCCCCCEEEEECCCCC---EEEEEEEEECCCEEEEEEEEEECCCCCE
T ss_conf 9897168888776858-76899999999999971548866999715688---7899999977967999998653389971
Q ss_pred CCCCCCCCCCEEEEECCHHHH-HHHHHHHHHHHHCCCEE--EEEEEE----CCEEEEEECCCCHH-HHH-HHHHCCCCHH
Q ss_conf 000000147311100778999-99999999999849879--999511----78788983688303-788-9975199989
Q gi|254780696|r 233 NRSNIHAGGKAELTKLTKIDL-DICKRIGESLRERGLFF--TGIDVI----GDYITEINVTSPTC-IRE-IHRNGGENVA 303 (316)
Q Consensus 233 ~r~Nl~~Gg~~~~~~lt~~~~-~i~~~~~~~L~~~gl~~--~GiDii----g~~i~EvNvtsP~g-~~~-~~~~~~~~i~ 303 (316)
|.- =|...+.+|++.+. +|...+...|...|+.+ +-+++. |++|+|||-==.|| +.+ ++.++|+|+.
T Consensus 220 FVE----~GH~fPApL~~~~~~~I~d~v~raL~AlGl~~GpAHTEvklT~~GPvVIEINPRLAGGmIP~Lve~A~GvDll 295 (892)
T PRK02186 220 FVE----IGHDFPAPLSAPQRERIVRTVLRALDAVGYAFGPAHTELRVRGDTVVIIEINPRLAGGMIPVLLEEAFGVDLL 295 (892)
T ss_pred EEE----ECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEEECCCCCCCCCHHHHHHHHCCCHH
T ss_conf 787----0676789998589999999999999970866688328999938973899978854467658999887184189
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780696|r 304 SLFWDG 309 (316)
Q Consensus 304 ~~i~d~ 309 (316)
+.+++.
T Consensus 296 ~~~~~~ 301 (892)
T PRK02186 296 DHVIDL 301 (892)
T ss_pred HHHHHH
T ss_conf 999998
No 17
>PRK07206 hypothetical protein; Provisional
Probab=99.60 E-value=2e-12 Score=101.80 Aligned_cols=283 Identities=16% Similarity=0.145 Sum_probs=162.5
Q ss_pred CCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCC--CCEEEEC-CCCCCCH
Q ss_conf 331899709988848476467999999998898899995412489998999999999980777--4126504-6443521
Q gi|254780696|r 4 IRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKK--EQYYSLG-EEKIIDL 80 (316)
Q Consensus 4 ~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~--~~~f~~~-~~~~~~L 80 (316)
|||=.+++||.+ |-..|..|+++||+++.......- +. ..+. -++.... ..+..-. ......+
T Consensus 1 ~~~~vviVDp~S-------tG~~la~a~~~~G~~~v~V~S~~~-~~--~~~~----~~f~~~~~~~~~~~~~~~~~~~~~ 66 (415)
T PRK07206 1 MMKKVVIVDPFS-------SGKFLAPAFKKRGIELIAVTSACD-LD--PLYY----AGFDENIYRQQRIIKHIDETIEFL 66 (415)
T ss_pred CCCEEEEECCCC-------CHHHHHHHHHHCCCEEEEEEECCC-CC--HHHH----CCCCHHHHHHHHCCCCHHHHHHHH
T ss_conf 985599986765-------187999999973982899983798-84--3544----232434343321057899999999
Q ss_pred H--HCCEEEEECCCCCCHHHHHHHH-HHHHHCCCCEEECCHHHHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHHHH
Q ss_conf 0--0636688328862247999999-99862358504117488752565034334543----044310003724556888
Q gi|254780696|r 81 S--QMDVILIRQDPPFNMHYITSTY-LLEKINPETLIVNNPFWIRNSPEKIFVTEFSE----LMPPTLISRDITQITRFY 153 (316)
Q Consensus 81 ~--~fD~i~iR~dPp~d~~yi~~~~-~Le~~~~~~~viN~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~ 153 (316)
. ++++|+.= ...++-..- +-+.+ +...-|+|......+||..+.+... ..|+++.+++.+++..++
T Consensus 67 ~~~~~~aVi~g-----~E~gV~lAd~La~~L--gLp~~N~~~~~~aRRdK~~m~~~L~~aGl~~~~~~~~~~~~e~~~~~ 139 (415)
T PRK07206 67 RQLGPDAVIAG-----AESGVELADRLAERL--GLCYANAPALSSARRNKYEMINALANAGLPAIRQIDTADWEEASAWI 139 (415)
T ss_pred HHCCCCEEEEC-----CHHHHHHHHHHHHHH--CCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCEEECCCHHHHHHHH
T ss_conf 86297299978-----556599999999986--89989955688774599999999997599855388529999999999
Q ss_pred HHHH----HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHH------CCCCCCEEECCCCCCCCCEEEEEECCEE-EE
Q ss_conf 8521----43311168854344687448871158899999840------0133400210534456826999989988-63
Q gi|254780696|r 154 LEMK----DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEK------YPEPLMIQSYLPQIRDGDKRILLLNGKP-VG 222 (316)
Q Consensus 154 ~~~~----~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~------~~~~ii~Qefi~~~~~gD~Rv~vi~g~~-v~ 222 (316)
++++ |+|+||++|+|+.||+++. +...+...++.+... .+..+++||||.... .-+=.+..||+. +.
T Consensus 140 ~~~~~~~~PvVvKP~~gagS~gV~~c~-~~~el~~a~~~i~~~~n~~g~~~~~vLveEyl~G~E-ysVe~vs~~G~h~v~ 217 (415)
T PRK07206 140 RVNNLWDSPVVIKPLESAGSDGVFFCP-DKQDAYHAFNAILGKANKLGLVNESVLVQEFLIGTE-YVVNTVSINGNHLVT 217 (415)
T ss_pred HHCCCCCCCEEEECCCCCCCCCEEEEC-CHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCE-EEEEEEEECCCEEEE
T ss_conf 860557999899589999879989979-999999999998566543578675388754146857-899999878968999
Q ss_pred EEEEECCCCCCCCCCCCCCCEEEEECCH-HHHHHHHHHHHHHHHCCCEEEE--EEEE----CCEEEEEECCCCHHH--HH
Q ss_conf 2122045686000000147311100778-9999999999999984987999--9511----787889836883037--88
Q gi|254780696|r 223 AVNRIPSEVDNRSNIHAGGKAELTKLTK-IDLDICKRIGESLRERGLFFTG--IDVI----GDYITEINVTSPTCI--RE 293 (316)
Q Consensus 223 a~~R~~~~~~~r~Nl~~Gg~~~~~~lt~-~~~~i~~~~~~~L~~~gl~~~G--iDii----g~~i~EvNvtsP~g~--~~ 293 (316)
.+++..+.. .-.....-......+.++ ...+++.-+...|.+.|+.+.- ..++ |+.++|+|.-.+||. .-
T Consensus 218 ~i~~y~k~~-~~~~~~~~~~~~~~p~~~~~~~~l~~y~~~~l~ALGi~~G~~H~Ev~lt~~gp~liE~~~R~~G~~~~~~ 296 (415)
T PRK07206 218 EIVRYHKTS-LNRGSVVYDYDELLPCTSPEYQELVDYTKKALDALGIKNGPAHAEIMLTSDGPVLIETGARLDGGLHPDA 296 (415)
T ss_pred EEEEECCCC-CCCCCEEEECCEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCHHH
T ss_conf 999972556-8998656532035699848999999999999998387757721899982898289996787789864789
Q ss_pred HHHHCCCCHHHHHHHHH
Q ss_conf 99751999899999999
Q gi|254780696|r 294 IHRNGGENVASLFWDGI 310 (316)
Q Consensus 294 ~~~~~~~~i~~~i~d~i 310 (316)
+...+|.|.....++..
T Consensus 297 ~~~~~g~~~~~~~v~~~ 313 (415)
T PRK07206 297 ARVATGFSQLDLTAQSL 313 (415)
T ss_pred HHHCCCCCHHHHHHHHH
T ss_conf 98705879999999985
No 18
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=99.59 E-value=7.7e-12 Score=98.00 Aligned_cols=296 Identities=16% Similarity=0.206 Sum_probs=168.3
Q ss_pred CCCCCEEEEEECCHHHCCCCCCCH----HHHHHHHHHCCCEEEEEEH--HHEEEEC-CEE--EEEEEEEEEEC--CCCCE
Q ss_conf 965331899709988848476467----9999999988988999954--1248999-899--99999999807--77412
Q gi|254780696|r 1 MKKIRNIAIQMNHISTVKVKEDST----FAIALEAQVRGYQIFHYTP--DQLYMRD-SKI--YANTQPLSLDE--KKEQY 69 (316)
Q Consensus 1 mkk~~kI~fimDpi~~i~~~~DTT----~~Lm~eAq~RGheV~~~~~--~dL~~~~-g~v--~A~~~~i~i~~--~~~~~ 69 (316)
|.| |||++++= ...+..+-| .+..++..+.||+++.+.. +.-++.. ... ........... .....
T Consensus 1 M~k-~kI~Vl~G---G~S~EreVSl~Sg~~v~~~L~~~~y~v~~i~i~~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (344)
T PRK01966 1 MMK-IRVALLFG---GRSAEHEVSLVSAKNILKALDKDKFEVIPIGIDKDGRWYLIDGSNMELNSDDPLRIEEKKSAELL 76 (344)
T ss_pred CCC-CEEEEEEC---CCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEECCCCHHHCCCCCCCCCCCCCCCCCC
T ss_conf 997-68999958---78821899999999999976150885999998379887725641111024542101234443222
Q ss_pred EE-ECCCCCCCHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCC-EEECCHHHHHHCCCHHHHHHHHH----HCCCCEEE
Q ss_conf 65-04644352100636688328862247999999998623585-04117488752565034334543----04431000
Q gi|254780696|r 70 YS-LGEEKIIDLSQMDVILIRQDPPFNMHYITSTYLLEKINPET-LIVNNPFWIRNSPEKIFVTEFSE----LMPPTLIS 143 (316)
Q Consensus 70 f~-~~~~~~~~L~~fD~i~iR~dPp~d~~yi~~~~~Le~~~~~~-~viN~p~~i~~~~eKl~~~~~~~----~~P~T~vt 143 (316)
.. ........+.++|++|+=.-=++-.++.-. .+||.+ +. ++-.++.+-..|-||..+-.+.. ++|+-.+.
T Consensus 77 ~~~~~~~~~~~~~~~D~vf~alHG~~GEDG~iQ-glLe~l--~IPYtGs~~~asal~mDK~~tK~i~~~~gI~tp~~~~~ 153 (344)
T PRK01966 77 LALPGFYEGQLIIEVDVVFPVLHGPPGEDGTIQ-GLLELL--NIPYVGCGVLASAVSMDKILTKRLLAAAGIPQAPYVVL 153 (344)
T ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHH-HHHHHC--CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 345532210003567899990689997670999-999975--99936884899998766999999999879998983998
Q ss_pred CCHH---HHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEEC--
Q ss_conf 3724---5568888521-433111688543446874488711588999998400133400210534456826999989--
Q gi|254780696|r 144 RDIT---QITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLN-- 217 (316)
Q Consensus 144 ~~~~---~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~-- 217 (316)
+... .+....+..+ |+|+||..+....||.++.. ..++...++.... +...+++++||+ +.++.|-|++
T Consensus 154 ~~~~~~~~~~~~~~~l~~P~iVKP~~~GSSiGvs~v~~-~~el~~ai~~a~~-~~~~vlvEefI~---GrE~tv~vl~~~ 228 (344)
T PRK01966 154 TRSRREEAIAEVEEKLGLPVFVKPANLGSSVGISKVKN-EEELEAALDLAFE-YDRKVLVEQGIK---GREIECAVLGYN 228 (344)
T ss_pred ECCCCHHHHHHHHHHCCCCEEEECCCCCCCCCEEEECC-HHHHHHHHHHHHH-CCCCCEEECCCC---CEEEEEEEECCC
T ss_conf 16662345899998618987993289963432599689-9999999999986-397505751244---489999997489
Q ss_pred CEEEE-EEEEECCCCCC---CCCCCCCCCE---EEEECCHHH----HHHHHHHHHHHHHCCCE-EEEEEEE----C-CEE
Q ss_conf 98863-21220456860---0000014731---110077899----99999999999984987-9999511----7-878
Q gi|254780696|r 218 GKPVG-AVNRIPSEVDN---RSNIHAGGKA---ELTKLTKID----LDICKRIGESLRERGLF-FTGIDVI----G-DYI 280 (316)
Q Consensus 218 g~~v~-a~~R~~~~~~~---r~Nl~~Gg~~---~~~~lt~~~----~~i~~~~~~~L~~~gl~-~~GiDii----g-~~i 280 (316)
+.+.. ....+-++++| .+-...+|.. .+.+++++. +++|.++-+.| |+. |+-+|++ | .|+
T Consensus 229 ~~~~~l~~~Ei~~~~~fydy~~KY~~~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~~l---g~rg~~RiDf~~d~~g~~y~ 305 (344)
T PRK01966 229 DEPVASVPGEIVKDNDFYDYEAKYIDDSGATLVIPADLSEELTEQIRELAIKAFKAL---GCSGLARVDFFLTEDGEIYL 305 (344)
T ss_pred CCEEEECCEEECCCCCCCCHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHH---CCCCEEEEEEEEECCCCEEE
T ss_conf 946773115871798751488810468971696678899999999999999999981---99727989899908998899
Q ss_pred EEEECCCCH-----HHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 898368830-----37889975199989999999988
Q gi|254780696|r 281 TEINVTSPT-----CIREIHRNGGENVASLFWDGIEK 312 (316)
Q Consensus 281 ~EvNvtsP~-----g~~~~~~~~~~~i~~~i~d~ie~ 312 (316)
+||| |-|| -+...-+..|++..+.+-.-|+.
T Consensus 306 lEvN-t~PGmT~~Sl~p~~a~~~G~s~~~li~~ii~~ 341 (344)
T PRK01966 306 NEIN-TLPGFTPISMYPKLWEASGLSYPELIDRLIEL 341 (344)
T ss_pred EEEE-CCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 9820-89998754789999998099999999999999
No 19
>pfam02655 ATP-grasp_3 ATP-grasp domain. No functional information or experimental verification of function is known in this family. This family appears to be an ATP-grasp domain (Pers. obs. A Bateman).
Probab=99.55 E-value=4.8e-14 Score=112.44 Aligned_cols=143 Identities=27% Similarity=0.365 Sum_probs=96.5
Q ss_pred CCCHHHHHHHHH----HCCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCE
Q ss_conf 565034334543----0443100037245568888521433111688543446874488711588999998400133400
Q gi|254780696|r 124 SPEKIFVTEFSE----LMPPTLISRDITQITRFYLEMKDIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMI 199 (316)
Q Consensus 124 ~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~~~~~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~ 199 (316)
+.||+.+.++.+ ++|+|+...+.+++ ..|+|+||.+|+||+||+++...+ .+.+ ....+++
T Consensus 1 A~DK~~t~~~l~~~gip~P~~~~~~~~~~~------~~P~VvKP~~g~gs~Gv~~v~~~~----~l~~-----~~~~~li 65 (160)
T pfam02655 1 ASDKLKTYKALKNAGVPTPETLSAEEPTEE------EKKYIVKPRDGCGGEGVRFVENGR----EDEE-----FIENVII 65 (160)
T ss_pred CCCHHHHHHHHHHCCCCCCCEEECCCHHHC------CCCEEEECCCCCCCCCEEEEECHH----HHHH-----HCCCEEE
T ss_conf 989899999999879599999865782355------998999808989873189994899----9865-----3256588
Q ss_pred EECCCCCCCCCEEEEEECCEEEE-EEEEECCCCCCCCCCCCCCCE-EEEECCHHHHHHHHHHHHHHHHCCCE-EEEEEEE
Q ss_conf 21053445682699998998863-212204568600000014731-11007789999999999999984987-9999511
Q gi|254780696|r 200 QSYLPQIRDGDKRILLLNGKPVG-AVNRIPSEVDNRSNIHAGGKA-ELTKLTKIDLDICKRIGESLRERGLF-FTGIDVI 276 (316)
Q Consensus 200 Qefi~~~~~gD~Rv~vi~g~~v~-a~~R~~~~~~~r~Nl~~Gg~~-~~~~lt~~~~~i~~~~~~~L~~~gl~-~~GiDii 276 (316)
||||+.. +-.+.++.-++++.. ++.|.-....++.+...|+.. ......++..++|.+++..|. |+. ++|||++
T Consensus 66 qe~i~G~-e~sv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~--~~~G~~~vd~~ 142 (160)
T pfam02655 66 QEFIEGE-PLSVSLLSDGEKALPLSVNRQLIDNAGSGFVYAGNLTPSRTELKEELEELAEEVVEALP--GLRGYVGVDLV 142 (160)
T ss_pred EEEEECC-EEEEEEEEECCEEEEEEEEEEEECCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHC--CCCCEEEEEEE
T ss_conf 7479444-23899999899999999857885147864210376301375888999999999999843--87564888999
Q ss_pred ----CCEEEEEE
Q ss_conf ----78788983
Q gi|254780696|r 277 ----GDYITEIN 284 (316)
Q Consensus 277 ----g~~i~EvN 284 (316)
+.|++|||
T Consensus 143 ~~~~~~~viEiN 154 (160)
T pfam02655 143 LTDNGPYVIEVN 154 (160)
T ss_pred EECCEEEEEEEE
T ss_conf 999908999996
No 20
>PRK06849 hypothetical protein; Provisional
Probab=99.55 E-value=4.9e-13 Score=105.84 Aligned_cols=246 Identities=15% Similarity=0.137 Sum_probs=151.3
Q ss_pred CHHHHHHHHHHCCCEEEEEEHHHEEEEC-CEEEEEEEEE-EEECCCCCEEEECCCCCCCHHHCCEEEEECCCCCCHHHHH
Q ss_conf 6799999999889889999541248999-8999999999-9807774126504644352100636688328862247999
Q gi|254780696|r 23 STFAIALEAQVRGYQIFHYTPDQLYMRD-SKIYANTQPL-SLDEKKEQYYSLGEEKIIDLSQMDVILIRQDPPFNMHYIT 100 (316)
Q Consensus 23 TT~~Lm~eAq~RGheV~~~~~~dL~~~~-g~v~A~~~~i-~i~~~~~~~f~~~~~~~~~L~~fD~i~iR~dPp~d~~yi~ 100 (316)
-++.+++...+.||+|+..++....+.. .+.......+ ....+...|.+.. .+.+.-...|++++=-++ -.|++
T Consensus 16 ~aL~laR~l~~~Gh~V~~aD~~~~~l~r~Sr~v~~~~~vP~P~~d~~~y~~~L-l~Iv~~e~idl~IP~~ee---v~~~a 91 (387)
T PRK06849 16 AALQLARSFHNAGHTVILADSLKYPLSRFSRAVDGFYTIPSPKWDPNAYIQAL-LSIVKRHNIDLLIPTCEE---VFYLS 91 (387)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCCCHHHCEEEEEECCCCCCCHHHHHHHH-HHHHHHHCCCEEEECCCH---HHHHH
T ss_conf 89999999987899799984898775420000112798699978989999999-999998389999977768---99998
Q ss_pred HHHHHHHHCCCCE-EECCHHHHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHHHHHH--HHHHHHHCCCCCCCCCEE
Q ss_conf 9999986235850-4117488752565034334543----04431000372455688885--214331116885434468
Q gi|254780696|r 101 STYLLEKINPETL-IVNNPFWIRNSPEKIFVTEFSE----LMPPTLISRDITQITRFYLE--MKDIIIKPLYGNGGTGVF 173 (316)
Q Consensus 101 ~~~~Le~~~~~~~-viN~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~~--~~~vViKPl~g~~G~gV~ 173 (316)
+..+++...+. +.-+.+.+...-||....++.+ .+|+|+...|++++..|... +.++|+||.++.+|.+|.
T Consensus 92 --~~~~~l~~~~~~~~~d~~~l~~LhdK~~F~~~a~~lGl~vP~T~~i~s~edv~~~~~~~~~~~~ilKPv~~~~~~~v~ 169 (387)
T PRK06849 92 --LAKEELSAYCHVFHFDFDLLLMLHNKFEFIQQARSLGLSAPKTYLITDPEAIINFDFKTPHTPYVLKPIYSRFVRRVD 169 (387)
T ss_pred --HHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHCCCCCCEEECCCCCCCCCEEE
T ss_conf --657644767637658999999864489999999974999998898189999986553366897898237666533365
Q ss_pred EECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEECCEEEE-EEEEECCCCCCCCCCCCCCCEEEEECCHHH
Q ss_conf 7448871158899999840013340021053445682699998998863-212204568600000014731110077899
Q gi|254780696|r 174 RITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGKPVG-AVNRIPSEVDNRSNIHAGGKAELTKLTKID 252 (316)
Q Consensus 174 ~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~g~~v~-a~~R~~~~~~~r~Nl~~Gg~~~~~~lt~~~ 252 (316)
+.... ..++.+.-....|+++||||+.-. .-.=.++.+|++++ +..|. ++..+...+-..+.++ +++.
T Consensus 170 ~~~~~-----~~l~~l~~s~~~p~v~Qe~I~G~~-~ct~al~~~Gkv~A~~~y~~----~~~~~~g~~v~fe~v~-~p~i 238 (387)
T PRK06849 170 LTKTK-----AAVLKLPISHKSPWIMQEFIPGQE-YCSYSIVRSGELRAHSCYKP----EFTAGLGAQIAFQPIN-NPRI 238 (387)
T ss_pred ECCCH-----HHHHCCCCCCCCCEEEEEECCCCE-EEEEEEEECCEEEEEEEEEC----CEECCCCEEEEEEECC-CHHH
T ss_conf 21597-----786158876679828998716967-58999978999999998204----2205884057889758-8899
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEEE----CC-EEEEEE--CCC
Q ss_conf 999999999999849879999511----78-788983--688
Q gi|254780696|r 253 LDICKRIGESLRERGLFFTGIDVI----GD-YITEIN--VTS 287 (316)
Q Consensus 253 ~~i~~~~~~~L~~~gl~~~GiDii----g~-~i~EvN--vts 287 (316)
.+..++.++.+.-.| ++..|+| |. |++|+| +||
T Consensus 239 ~e~v~~f~~~~~~tG--~isFDFI~~~dG~~~~IECNPR~tS 278 (387)
T PRK06849 239 EEFVTHFVKELNYTG--QISFDFIQTENGDAYPIECNPRTTS 278 (387)
T ss_pred HHHHHHHHHHCCCEE--EEEEEEEECCCCCEEEEEECCCCCC
T ss_conf 999999998478515--8999999989998899984598666
No 21
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase homolog; InterPro: IPR011758 Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (IPR004666 from INTERPRO), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown..
Probab=99.54 E-value=6.3e-14 Score=111.67 Aligned_cols=172 Identities=25% Similarity=0.417 Sum_probs=112.2
Q ss_pred CHHHHHHHHH----HCCCCE-EECCHHH---HHHHHHHHHHHHHHCCCCCCCCCEEEECCCC------------------
Q ss_conf 5034334543----044310-0037245---5688885214331116885434468744887------------------
Q gi|254780696|r 126 EKIFVTEFSE----LMPPTL-ISRDITQ---ITRFYLEMKDIIIKPLYGNGGTGVFRITLGD------------------ 179 (316)
Q Consensus 126 eKl~~~~~~~----~~P~T~-vt~~~~~---~~~f~~~~~~vViKPl~g~~G~gV~~i~~~~------------------ 179 (316)
|||.|=..+. .+|+=+ |.+...+ +.++++.|.++|+||..||||.||..|...-
T Consensus 37 DKl~TK~~A~AaGi~VPelyGVI~~q~ev~~~~~ivkdh~dFVIKPAqGsGG~GIlVit~r~~~ryr~~sG~~i~~eeiE 116 (320)
T TIGR02291 37 DKLKTKILAIAAGIAVPELYGVIEIQKEVKSLDDIVKDHEDFVIKPAQGSGGDGILVITDRLDERYRKSSGALISKEEIE 116 (320)
T ss_pred CHHHHHHHHHHCCCCCCHHCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCEEEEECCCCCCCEECCCCCCCCHHHHH
T ss_conf 13678899873367110130100234665434666278898367266067987279970366884035410101545677
Q ss_pred CCHHHHHHHHHH-HCCCCCCEEECC-------CCC-CCC--CEEEEEECCEEEEEEEEECC-CCCCCCCCCCCCCEEEEE
Q ss_conf 115889999984-001334002105-------344-568--26999989988632122045-686000000147311100
Q gi|254780696|r 180 RNFSSLIEMLFE-KYPEPLMIQSYL-------PQI-RDG--DKRILLLNGKPVGAVNRIPS-EVDNRSNIHAGGKAELTK 247 (316)
Q Consensus 180 ~~~~~~~e~~~~-~~~~~ii~Qefi-------~~~-~~g--D~Rv~vi~g~~v~a~~R~~~-~~~~r~Nl~~Gg~~~~~~ 247 (316)
....+++.-+.+ .|+...-+=||. +.+ ++| |+|++|+-|=||.||.|.|. ..|=++||||||....++
T Consensus 117 ~hvSniL~GLySLGG~~D~AliEyrvkfDp~F~~~SYeGVPDiRiIVf~GyPVmaM~RlpTr~SdGKANLHQGAvGvGiD 196 (320)
T TIGR02291 117 RHVSNILAGLYSLGGKRDRALIEYRVKFDPLFESVSYEGVPDIRIIVFKGYPVMAMLRLPTRASDGKANLHQGAVGVGID 196 (320)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 88888887776507997736885320105344771113458726896418610210027656788830212460242023
Q ss_pred CC-----------------------------HHH---HHHHHHHHHHHHHCCCEEEEEEEE-----CCEEEEEECCCCHH
Q ss_conf 77-----------------------------899---999999999999849879999511-----78788983688303
Q gi|254780696|r 248 LT-----------------------------KID---LDICKRIGESLRERGLFFTGIDVI-----GDYITEINVTSPTC 290 (316)
Q Consensus 248 lt-----------------------------~~~---~~i~~~~~~~L~~~gl~~~GiDii-----g~~i~EvNvtsP~g 290 (316)
|- |.| .++|.++=+.. ||=|.|+|++ |+.|+|.|+ =||-
T Consensus 197 laTG~t~~a~w~n~pi~~HPDTg~~~sglq~PhW~~ll~LAa~c~el~---GLGY~GvD~VLDke~GPlvLELNA-RPGL 272 (320)
T TIGR02291 197 LATGKTLRAVWLNQPIEKHPDTGKDVSGLQVPHWEKLLKLAAECYELV---GLGYLGVDMVLDKEKGPLVLELNA-RPGL 272 (320)
T ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHC---CCCCCCEEEEEECCCCCEEEEECC-CCCC
T ss_conf 114503212420676145838887535101667778999998775430---676002106874579881786447-8872
Q ss_pred HHHHHHHCCCC
Q ss_conf 78899751999
Q gi|254780696|r 291 IREIHRNGGEN 301 (316)
Q Consensus 291 ~~~~~~~~~~~ 301 (316)
--+|-+-.|+.
T Consensus 273 ~IQIAN~~Gl~ 283 (320)
T TIGR02291 273 AIQIANDAGLL 283 (320)
T ss_pred HHHHHCCCCCC
T ss_conf 12231314533
No 22
>pfam07478 Dala_Dala_lig_C D-ala D-ala ligase C-terminus. This family represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme EC:6.3.2.4. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF).
Probab=99.54 E-value=6.7e-13 Score=104.94 Aligned_cols=162 Identities=17% Similarity=0.245 Sum_probs=108.6
Q ss_pred HCCCCEEECCHH----HHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCC
Q ss_conf 044310003724----5568888521-43311168854344687448871158899999840013340021053445682
Q gi|254780696|r 136 LMPPTLISRDIT----QITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGD 210 (316)
Q Consensus 136 ~~P~T~vt~~~~----~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD 210 (316)
++|+.++.++.+ .+.++.++.| |+|+||.+|.+|.||.+++ +..++...++...+ +...+++|+||+ +.|
T Consensus 8 ptp~~~~v~~~~~~~~~~~~i~~~lg~P~vvKP~~~gss~Gv~~v~-~~~el~~~i~~~~~-~~~~vlVEefi~---G~E 82 (201)
T pfam07478 8 PVAPFIVLTREDWVLATIEKVEEKLGYPVFVKPANLGSSVGISKVT-SREELQSAIEEAFQ-YDNKVLIEEAIE---GRE 82 (201)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEC-CHHHHHHHHHHHHH-CCCCEEEEECCC---CCE
T ss_conf 9999089825323435799999865998899989999866879995-84687999999874-598079998566---967
Q ss_pred EEEEEECC---EEEEEEEEECCCC--CCCCCCCCCCCE--EEEECCHHH----HHHHHHHHHHHHHCCC-EEEEEEEE--
Q ss_conf 69999899---8863212204568--600000014731--110077899----9999999999998498-79999511--
Q gi|254780696|r 211 KRILLLNG---KPVGAVNRIPSEV--DNRSNIHAGGKA--ELTKLTKID----LDICKRIGESLRERGL-FFTGIDVI-- 276 (316)
Q Consensus 211 ~Rv~vi~g---~~v~a~~R~~~~~--~~r~Nl~~Gg~~--~~~~lt~~~----~~i~~~~~~~L~~~gl-~~~GiDii-- 276 (316)
++|-|+++ .+...+.+.++.+ ++.+....|... .+..++++. +++|.++.+.| |+ .+++||++
T Consensus 83 ~~v~vl~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~Pa~l~~~~~~~i~~~A~~~~~aL---g~~g~~rvD~~~d 159 (201)
T pfam07478 83 IECAVLGNEDLEVSPVGEIRLSGGFYDYEAKYILSSAQIIVPADLPEEVEEQIQELALKAYKAL---GCRGLARIDFFLT 159 (201)
T ss_pred EEEEEEECCCEEEEEEEEEECCCCEEEHHHEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHH---CCCCCEEEEEEEC
T ss_conf 9999970898089875899437750267680136872376156685999999999999999984---8876057999996
Q ss_pred --C-CEEEEEECCCCH-----HHHHHHHHCCCCHHHHH
Q ss_conf --7-878898368830-----37889975199989999
Q gi|254780696|r 277 --G-DYITEINVTSPT-----CIREIHRNGGENVASLF 306 (316)
Q Consensus 277 --g-~~i~EvNvtsP~-----g~~~~~~~~~~~i~~~i 306 (316)
| .|++||| |.|| -+...-++.|++..+.+
T Consensus 160 ~~g~~~vlEvN-~~Pg~~~~s~~~~~a~~~G~sy~~l~ 196 (201)
T pfam07478 160 EDGEIYLNEVN-TMPGFTSISLYPRMWAAAGLSYPDLI 196 (201)
T ss_pred CCCCEEEEEEC-CCCCCCCCCHHHHHHHHCCCCHHHHH
T ss_conf 89949999954-97999867699999998199999999
No 23
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=99.49 E-value=4.1e-13 Score=106.33 Aligned_cols=262 Identities=19% Similarity=0.240 Sum_probs=149.3
Q ss_pred CCCCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEE---EEEHHHEEEECCEEEEEEEEEEEEC----CCCCEEEEC
Q ss_conf 965331899709988848476467999999998898899---9954124899989999999999807----774126504
Q gi|254780696|r 1 MKKIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIF---HYTPDQLYMRDSKIYANTQPLSLDE----KKEQYYSLG 73 (316)
Q Consensus 1 mkk~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~---~~~~~dL~~~~g~v~A~~~~i~i~~----~~~~~f~~~ 73 (316)
|-|+.||+++.- -|......|.+.|++|| ||.|.||- ..-..+-++++.+... -.++|.-
T Consensus 8 ~ek~~kiLviGv----------ntR~vveSA~klGf~V~sv~~y~~~Dl~-~~a~~~l~~r~~~~~~rfe~~de~~li-- 74 (389)
T COG2232 8 SEKSCKILVIGV----------NTRPVVESASKLGFEVYSVQYYDPADLP-GDAISYLRERPGELLGRFENLDEQKLI-- 74 (389)
T ss_pred CCCCCEEEEEEE----------CCHHHHHHHHHCCEEEEEEEEECCCCCC-CCCCEEEEECCHHHCCCCCCCCHHHHH--
T ss_conf 145643899962----------3417677877447189986753432366-421027884485452765588989999--
Q ss_pred CCCCCCHHHCCEEEEECCCCCCHHHHHHHHHHHHHCC-CC-EEECCHH-HHHHCCCHHHHHHHHHHCCCCEEECC-HHHH
Q ss_conf 6443521006366883288622479999999986235-85-0411748-87525650343345430443100037-2455
Q gi|254780696|r 74 EEKIIDLSQMDVILIRQDPPFNMHYITSTYLLEKINP-ET-LIVNNPF-WIRNSPEKIFVTEFSELMPPTLISRD-ITQI 149 (316)
Q Consensus 74 ~~~~~~L~~fD~i~iR~dPp~d~~yi~~~~~Le~~~~-~~-~viN~p~-~i~~~~eKl~~~~~~~~~P~T~vt~~-~~~~ 149 (316)
+...---.++|+.++- +. ..-.|..-.. .+ +.-|+|. .+..+.+|+...+.. +.+-.-.. ...+
T Consensus 75 ~~~~~~~~dvD~~ii~----~s-----g~e~l~~~g~~~~~v~~n~P~~~v~~~snk~~~~r~l---~~lgmp~p~~~~~ 142 (389)
T COG2232 75 EAAEDLAEDVDAPIIP----FS-----GFEALRTSGELGCEVAGNEPEVKVVEASNKLKFYRKL---EVLGMPEPSEKKI 142 (389)
T ss_pred HHHHHHHHHCCEEEEE----CC-----CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH---HHCCCCCCHHHHH
T ss_conf 9998644532412540----35-----5321245675456445678278899988888652010---1028999704321
Q ss_pred HHHHHHHHHHHHHCCCCCCC-CCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCC-------C-CCEEEEEECCEE
Q ss_conf 68888521433111688543-44687448871158899999840013340021053445-------6-826999989988
Q gi|254780696|r 150 TRFYLEMKDIIIKPLYGNGG-TGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIR-------D-GDKRILLLNGKP 220 (316)
Q Consensus 150 ~~f~~~~~~vViKPl~g~~G-~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~-------~-gD~Rv~vi~g~~ 220 (316)
..+.+..+++|+||..|.|| .++....+.+. ...+++|+||+... . -|-+.+.+|.++
T Consensus 143 e~~~~gekt~IlKPv~GaGG~~el~~~~Ee~~-------------~~~~i~Qefi~G~p~Svs~is~g~~a~~la~N~Qi 209 (389)
T COG2232 143 EPLEEGEKTLILKPVSGAGGLVELVKFDEEDP-------------PPGFIFQEFIEGRPVSVSFISNGSDALTLAVNDQI 209 (389)
T ss_pred HHHHHCCEEEEEEECCCCCCEEEECCCCCCCC-------------CCCEEHHHHCCCCEEEEEEEECCCCEEEEEEEEEE
T ss_conf 14440210147730237886013100433458-------------76600334317841379997358623899970022
Q ss_pred EEEEEEECCCCC--CCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEE----CCEEEEEECCCCHH-HHH
Q ss_conf 632122045686--00000014731110077899999999999999849879999511----78788983688303-788
Q gi|254780696|r 221 VGAVNRIPSEVD--NRSNIHAGGKAELTKLTKIDLDICKRIGESLRERGLFFTGIDVI----GDYITEINVTSPTC-IRE 293 (316)
Q Consensus 221 v~a~~R~~~~~~--~r~Nl~~Gg~~~~~~lt~~~~~i~~~~~~~L~~~gl~~~GiDii----g~~i~EvNvtsP~g-~~~ 293 (316)
++..+- ..+. +..|+ ++.++...++..++|..+...|--.|.. |||++ |+||+||| .-++| +.-
T Consensus 210 I~~~~~--~~~~f~Y~GNl----TP~~~~~~ee~e~la~elV~~lgL~Gsn--GVDfvl~d~gpyViEVN-PR~qGt~e~ 280 (389)
T COG2232 210 IDGLRG--EYSQFVYKGNL----TPFPYEEVEEAERLAEELVEELGLVGSN--GVDFVLNDKGPYVIEVN-PRIQGTLEC 280 (389)
T ss_pred ECCCCC--CCCCCEECCCC----CCCCCHHHHHHHHHHHHHHHHHCCCCCC--CCCEEEECCCCEEEEEC-CCCCCHHHH
T ss_conf 145323--34441012676----7776502689999999999984235666--61068606885799956-854523788
Q ss_pred HHHHCCCCHHHHHHHH
Q ss_conf 9975199989999999
Q gi|254780696|r 294 IHRNGGENVASLFWDG 309 (316)
Q Consensus 294 ~~~~~~~~i~~~i~d~ 309 (316)
++..+|+|+-..-+.+
T Consensus 281 iE~s~giNl~~lHi~a 296 (389)
T COG2232 281 IERSSGINLFRLHIQA 296 (389)
T ss_pred HHHHCCCCHHHHHHHH
T ss_conf 8986177789999998
No 24
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=99.43 E-value=1.4e-12 Score=102.95 Aligned_cols=198 Identities=25% Similarity=0.300 Sum_probs=130.7
Q ss_pred CCCCHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCCE-EECCHHHHHHCCCHHHHHHHHH---HCCCCEEECCHHHHHH
Q ss_conf 43521006366883288622479999999986235850-4117488752565034334543---0443100037245568
Q gi|254780696|r 76 KIIDLSQMDVILIRQDPPFNMHYITSTYLLEKINPETL-IVNNPFWIRNSPEKIFVTEFSE---LMPPTLISRDITQITR 151 (316)
Q Consensus 76 ~~~~L~~fD~i~iR~dPp~d~~yi~~~~~Le~~~~~~~-viN~p~~i~~~~eKl~~~~~~~---~~P~T~vt~~~~~~~~ 151 (316)
...+|.++|+.++= .|-=|+---+.|.++|. .+. .--+|.+++.|.||..+..-.+ ..|+|.-
T Consensus 67 ~ek~le~~Da~LvI-APEdd~lLy~Ltri~E~---~~~nLG~S~~Ai~v~aDK~lty~aLr~aV~~p~t~e--------- 133 (307)
T COG1821 67 EEKALEKADATLVI-APEDDGLLYSLTRIYEE---YVENLGCSPRAIRVAADKRLTYKALRDAVKQPPTRE--------- 133 (307)
T ss_pred HHHHHHCCCEEEEE-ECCCCCHHHHHHHHHHH---HHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC---------
T ss_conf 99987528846998-04767718999999998---767508977787675108989998841124888553---------
Q ss_pred HHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEECCEEEE--EEEEE--
Q ss_conf 88852143311168854344687448871158899999840013340021053445682699998998863--21220--
Q gi|254780696|r 152 FYLEMKDIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGKPVG--AVNRI-- 227 (316)
Q Consensus 152 f~~~~~~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~g~~v~--a~~R~-- 227 (316)
..++-+..|+||.+|.||.|+. +..+.++. .++||||+.. -.-|.+.+|+-+. ++.|+
T Consensus 134 ~~~~~~k~ViKp~dgCgge~i~-~~~~~pd~--------------~i~qEfIeG~---~lSVSL~~GEkv~pLsvNrQfi 195 (307)
T COG1821 134 WAEEPKKYVIKPADGCGGEGIL-FGRDFPDI--------------EIAQEFIEGE---HLSVSLSVGEKVLPLSVNRQFI 195 (307)
T ss_pred CCCCCCEEEECCCCCCCCCEEE-CCCCCCCH--------------HHHHHHCCCC---CEEEEEECCCCCCCCEECHHHH
T ss_conf 5567856886225567751020-46777521--------------6678743776---1489985587344302322321
Q ss_pred CCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCE-EEEEEEE---CCEEEEEE--CCCCHHHHHHHHHCCCC
Q ss_conf 456860000001473111007789999999999999984987-9999511---78788983--68830378899751999
Q gi|254780696|r 228 PSEVDNRSNIHAGGKAELTKLTKIDLDICKRIGESLRERGLF-FTGIDVI---GDYITEIN--VTSPTCIREIHRNGGEN 301 (316)
Q Consensus 228 ~~~~~~r~Nl~~Gg~~~~~~lt~~~~~i~~~~~~~L~~~gl~-~~GiDii---g~~i~EvN--vtsP~g~~~~~~~~~~~ 301 (316)
--.++ +--...|-++...++.++..+.|.++.+.+. ||. |+|||++ ++||+||| .|.| .-++.++++.+
T Consensus 196 ~~~~~-~~~y~gg~~pi~he~k~~~~~~Ai~aVeci~--Gl~GYVGVDlVlsD~pYvIEINpR~TTp--~vg~sr~~~~s 270 (307)
T COG1821 196 IFAGS-ELVYNGGRTPIDHELKREAFEEAIRAVECIP--GLNGYVGVDLVLSDEPYVIEINPRPTTP--TVGLSRVTPES 270 (307)
T ss_pred HHCCC-EEEECCCCCCCCCHHHHHHHHHHHHHHHHHC--CCCCEEEEEEEECCCCEEEEECCCCCCC--EEEEECCCCHH
T ss_conf 00142-3443367678881788999999999997402--5554266789964985799946877764--34320146177
Q ss_pred HHHHHHHH
Q ss_conf 89999999
Q gi|254780696|r 302 VASLFWDG 309 (316)
Q Consensus 302 i~~~i~d~ 309 (316)
++..++..
T Consensus 271 v~~LLl~~ 278 (307)
T COG1821 271 VAELLLEG 278 (307)
T ss_pred HHHHHHCC
T ss_conf 99998528
No 25
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase; InterPro: IPR005905 D-alanine--D-alanine ligase (6.3.2.4 from EC) is a bacterial enzyme involved in cell-wall biosynthesis. It participates in forming UDP-N-acetylmuramoyl pentapeptide, the peptidoglycan precursor. These enzymes are proteins of 300 to 360 amino acids containing many conserved regions. The N-terminal Gly-rich region could be involved in ATP-binding. This family of enzymes represent chromosomal versions of species not specifically resistant to glycopeptide antibiotics such as vancomycin. The mechanism of glycopeptide antibiotic resistance involves the production of D-alanine-D-lactate (VanA and VanB families) or D-alanine-D-serine (VanC). This model attempts to exclude the VanA/VanB and VanC subfamilies while capturing most other D-Ala-D-Ala ligases above the trusted cut-off. However, changes in small numbers of amino acids, as demonstrated crystallographically, can alter specificity. In chlamydial species, this enzyme is found as a fusion protein with UDP-N-acetylmuramate--alanine ligase. ; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005737 cytoplasm.
Probab=99.40 E-value=3.6e-11 Score=93.60 Aligned_cols=285 Identities=17% Similarity=0.262 Sum_probs=174.0
Q ss_pred CCCCCHHHHHHHHHHC--------CCEEEEEEHHHEE--EE-CCEEEEE---EEEEEEECCCC----CE----------E
Q ss_conf 4764679999999988--------9889999541248--99-9899999---99999807774----12----------6
Q gi|254780696|r 19 VKEDSTFAIALEAQVR--------GYQIFHYTPDQLY--MR-DSKIYAN---TQPLSLDEKKE----QY----------Y 70 (316)
Q Consensus 19 ~~~DTT~~Lm~eAq~R--------GheV~~~~~~dL~--~~-~g~v~A~---~~~i~i~~~~~----~~----------f 70 (316)
++-.|-.++.++..++ ||+++.++++... .. +-...+- -.+-.+.+... .| +
T Consensus 15 iSL~Sa~~v~~aL~~~~~FIF~deg~~v~~~~~~~~g~w~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (375)
T TIGR01205 15 ISLVSAQAVLKALRSLLEFIFLDEGYDVYPVDIDKQGSWVFSDAKTEALVYKDLLQKLLEQGGPINLSSLAQVSLLGESF 94 (375)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCEEEEEEEECCCCCEECCCCCCCCCCCCCHHHHHHHCCCCEECCCCCCCCCCCCCC
T ss_conf 75899999999865208766531664899986226773300345655521110046776358974014667410035566
Q ss_pred EECCCCCCCHHHCCEEEEECCCC-CCHHH-HHHHHHHHHHCCCC-EEECCHHHHHHCCCHHHHHH-HHH---HCCCCEEE
Q ss_conf 50464435210063668832886-22479-99999998623585-04117488752565034334-543---04431000
Q gi|254780696|r 71 SLGEEKIIDLSQMDVILIRQDPP-FNMHY-ITSTYLLEKINPET-LIVNNPFWIRNSPEKIFVTE-FSE---LMPPTLIS 143 (316)
Q Consensus 71 ~~~~~~~~~L~~fD~i~iR~dPp-~d~~y-i~~~~~Le~~~~~~-~viN~p~~i~~~~eKl~~~~-~~~---~~P~T~vt 143 (316)
-..-.....+..+|+||+=.-=| +=.++ |-. +||.+ +. ++=.+.-|=-.|=||+.+=+ |.. ++|+=.+.
T Consensus 95 ~~~~~~~~~~~~~D~vF~~LHG~~~GEDGtiQG--lLe~~--gIPY~Gsgv~aSA~smDK~~tK~~~~~~Glp~~~y~~l 170 (375)
T TIGR01205 95 LLEAESAEALEEIDVVFPVLHGPPYGEDGTIQG--LLELL--GIPYTGSGVLASALSMDKLLTKLLLKSLGLPTPDYAVL 170 (375)
T ss_pred CCCCCCCHHHCCCCEEEEEECCCCCCCCCCHHH--HHHHH--CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE
T ss_conf 666445302047988998121856685552899--99970--78703747899998742899999998757974470467
Q ss_pred --CCHH-----HHHH--HHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEE
Q ss_conf --3724-----5568--888521-43311168854344687448871158899999840013340021053445682699
Q gi|254780696|r 144 --RDIT-----QITR--FYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRI 213 (316)
Q Consensus 144 --~~~~-----~~~~--f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv 213 (316)
.+.. +.+. ..+.+| |+|+||...-.-.||.++. +++.+...++.... +...||+++|.+.+.+.++-|
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~lg~P~~VKPa~~GSSvG~~~V~-~~~eL~~a~~~Af~-~d~~v~vE~~~~~i~grEl~v 248 (375)
T TIGR01205 171 RRKERSSEDEAECENVAVLEKLGFPVFVKPAREGSSVGISKVK-SEEELEAALDEAFK-YDERVIVEEFKQRIKGRELEV 248 (375)
T ss_pred EECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEC-CHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCEEEE
T ss_conf 5045445613468999999836897899734677757789846-77899999998615-596599981114789852689
Q ss_pred EEEC-CEEEEEEEEECCCC-----CC---CCCCCCCC-C--EEEEE--CCHHH----HHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 9989-98863212204568-----60---00000147-3--11100--77899----99999999999984987999951
Q gi|254780696|r 214 LLLN-GKPVGAVNRIPSEV-----DN---RSNIHAGG-K--AELTK--LTKID----LDICKRIGESLRERGLFFTGIDV 275 (316)
Q Consensus 214 ~vi~-g~~v~a~~R~~~~~-----~~---r~Nl~~Gg-~--~~~~~--lt~~~----~~i~~~~~~~L~~~gl~~~GiDi 275 (316)
=++| ++...++.=++... +| -+=...|. + ..+.+ |+++. +++|.++-+.|.-.| ++-||+
T Consensus 249 ~~L~~~~~lp~~~~~~~~~~~g~~~FYDY~~KY~~~~g~~~~~pa~~~L~~~~~~~i~~~a~~ay~~~~~~G--~~R~DF 326 (375)
T TIGR01205 249 SILGNEEALPIISIVPEIEPDGGSDFYDYEAKYLDGDGTEYVIPAPAGLDEELEEKIKELALKAYKALGCRG--LARVDF 326 (375)
T ss_pred EEEECCCCCEEEECCCCCCCCCCCEECCHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCC--EEEEEE
T ss_conf 887079743245406753567676000021142778873265156567888999999999999998408874--489989
Q ss_pred E-----CC-EEEEEECCCCH-----HHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 1-----78-78898368830-----37889975199989999999988
Q gi|254780696|r 276 I-----GD-YITEINVTSPT-----CIREIHRNGGENVASLFWDGIEK 312 (316)
Q Consensus 276 i-----g~-~i~EvNvtsP~-----g~~~~~~~~~~~i~~~i~d~ie~ 312 (316)
+ |. ||.||| |.|| -+..+-++.|++..+.+...|+.
T Consensus 327 f~~~~~G~~yLnEiN-T~PGmT~~Sl~P~~~~~~G~~f~~Lv~~~~~~ 373 (375)
T TIGR01205 327 FLDKETGEIYLNEIN-TIPGMTAISLFPKAAAAAGLEFEQLVERILEL 373 (375)
T ss_pred EEECCCCEEEEEEEC-CCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 987288869999876-88887201269999997188878999999985
No 26
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=99.35 E-value=5.7e-11 Score=92.28 Aligned_cols=235 Identities=17% Similarity=0.243 Sum_probs=149.9
Q ss_pred CCEEEECCCCCCCHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEECCHHHHHHCCCHHHHHHHHH----HCCCC-E
Q ss_conf 412650464435210063668832886224799999999862358504117488752565034334543----04431-0
Q gi|254780696|r 67 EQYYSLGEEKIIDLSQMDVILIRQDPPFNMHYITSTYLLEKINPETLIVNNPFWIRNSPEKIFVTEFSE----LMPPT-L 141 (316)
Q Consensus 67 ~~~f~~~~~~~~~L~~fD~i~iR~dPp~d~~yi~~~~~Le~~~~~~~viN~p~~i~~~~eKl~~~~~~~----~~P~T-~ 141 (316)
..|..........+..+|++|+..-=|+-.++--. .+|+.+ .-.+|.....+--.+-+|+.+-.+.+ +.++- .
T Consensus 46 ~~~~~~~~~~~~~~~~~~vvfp~lhG~~gEDg~iq-g~le~~-giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~~ 123 (317)
T COG1181 46 GLWMLDKEVTKRVLQKADVVFPVLHGPYGEDGTIQ-GLLELL-GIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVA 123 (317)
T ss_pred CEEEECCCHHHHHHCCCCEEEEECCCCCCCCCHHH-HHHHHH-CCCEEECCHHHHHHCCCHHHHHHHHHHCCCCCCHHHH
T ss_conf 32785031012220269877871558888870699-999970-9987607644533235099998899867865123567
Q ss_pred EECC---HHHHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEEC
Q ss_conf 0037---245568888521-433111688543446874488711588999998400133400210534456826999989
Q gi|254780696|r 142 ISRD---ITQITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLN 217 (316)
Q Consensus 142 vt~~---~~~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~ 217 (316)
++.+ .....++.+..+ |+++||...-.-.|+.+++. ..++.++++... ++.+.+++++|+. ..++.+=+++
T Consensus 124 ~~~~~~~~~~~e~~~~~l~~p~~Vkp~~~gSSvg~~~v~~-~~d~~~~~e~a~-~~d~~vl~e~~~~---~rei~v~vl~ 198 (317)
T COG1181 124 LTRDEYSSVIVEEVEEGLGFPLFVKPAREGSSVGRSPVNV-EGDLQSALELAF-KYDRDVLREQGIT---GREIEVGVLG 198 (317)
T ss_pred HHCCCCHHHHHHHHHCCCCCCEEEECCCCEEEEEEEECCE-ECCHHHHHHHHH-HHCCCCEECCCCC---CCEEEEEECC
T ss_conf 5334520478887741468878998587311367998835-043699999999-8478512003776---6558986358
Q ss_pred CEE--EE-EEEEECCC-CCC----CCCCCCCCC-EEE-EECCHHH----HHHHHHHHHHHHHCC-CEEEEEEEE--C---
Q ss_conf 988--63-21220456-860----000001473-111-0077899----999999999999849-879999511--7---
Q gi|254780696|r 218 GKP--VG-AVNRIPSE-VDN----RSNIHAGGK-AEL-TKLTKID----LDICKRIGESLRERG-LFFTGIDVI--G--- 277 (316)
Q Consensus 218 g~~--v~-a~~R~~~~-~~~----r~Nl~~Gg~-~~~-~~lt~~~----~~i~~~~~~~L~~~g-l~~~GiDii--g--- 277 (316)
+.. .+ .+.+++++ ..| -.|++.||+ ... ..+|++. +++|.++.+.| | ..++|+|++ .
T Consensus 199 ~~~~~~~l~~~eI~~~~~~fydye~Ky~~~gg~~~~~pa~lt~~~~~~i~~lA~~a~~al---g~~g~~rvDf~~~~~~g 275 (317)
T COG1181 199 NDYEEQALPLGEIPPKGEEFYDYEAKYLSTGGAQYDIPAGLTDEIHEEIKELALRAYKAL---GCLGLARVDFFVDDDEG 275 (317)
T ss_pred CCCCCEECCCCEEECCCCEEEEEECCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHC---CCCCEEEEEEEEECCCC
T ss_conf 865524447616816998698600014578984353788999889999999999999860---88875888799987899
Q ss_pred C-EEEEEECCCCH-----HHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 8-78898368830-----37889975199989999999988
Q gi|254780696|r 278 D-YITEINVTSPT-----CIREIHRNGGENVASLFWDGIEK 312 (316)
Q Consensus 278 ~-~i~EvNvtsP~-----g~~~~~~~~~~~i~~~i~d~ie~ 312 (316)
+ |++||| |+|| -+..+-...|++.+..+...+|.
T Consensus 276 ~~~l~EvN-t~PG~t~~sl~P~~~~~~gi~~~~L~~~~~e~ 315 (317)
T COG1181 276 EFVLLEVN-TNPGMTAMSLFPKAAAAAGISFAILVLRFVEL 315 (317)
T ss_pred CEEEEEEE-CCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHH
T ss_conf 89999870-89987653537677987599889999999860
No 27
>pfam01071 GARS_A Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain. Phosphoribosylglycinamide synthetase catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by Phosphoribosylglycinamide synthetase is the ATP- dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide. This domain is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase (see pfam02786).
Probab=99.33 E-value=6.5e-11 Score=91.92 Aligned_cols=156 Identities=18% Similarity=0.241 Sum_probs=97.6
Q ss_pred CHHHHHHHHH----HCCCCEEECCHHHHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHH-----HCCC
Q ss_conf 5034334543----0443100037245568888521-4331116885434468744887115889999984-----0013
Q gi|254780696|r 126 EKIFVTEFSE----LMPPTLISRDITQITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFE-----KYPE 195 (316)
Q Consensus 126 eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~-----~~~~ 195 (316)
+|.++=++.+ ++|+....+|.+++.+++++.+ |+|+||.+++||+||+++... ..+...+..+.. ....
T Consensus 2 dK~~~r~~l~~~gip~p~~~~~~~~~ea~~~~~~~g~P~VvKp~~~~gs~Gv~~v~~~-~e~~~a~~~~~~~~~~~~~~~ 80 (193)
T pfam01071 2 SKSFAKDFMKRHGIPTAEYETFTDPEEAKSYIREAGFPAVVKADGLAAGKGVIVAMDN-EEAIKAVDEILEQKKFGEAGE 80 (193)
T ss_pred CHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCH-HHHHHHHHHHHHHCCCCCCCC
T ss_conf 8899999999869899990787899999999997699889997434678837995458-999999999985230357899
Q ss_pred CCCEEECCCCCCCCCEEEEEE-CC-EEEE-EEEEEC-CCCCCCCCCCCCCCE--EEEE-CCHHH-----HHHHHHHHHHH
Q ss_conf 340021053445682699998-99-8863-212204-568600000014731--1100-77899-----99999999999
Q gi|254780696|r 196 PLMIQSYLPQIRDGDKRILLL-NG-KPVG-AVNRIP-SEVDNRSNIHAGGKA--ELTK-LTKID-----LDICKRIGESL 263 (316)
Q Consensus 196 ~ii~Qefi~~~~~gD~Rv~vi-~g-~~v~-a~~R~~-~~~~~r~Nl~~Gg~~--~~~~-lt~~~-----~~i~~~~~~~L 263 (316)
++++||||+.. .+-|..+ +| .++. ...|.. .-.+.....+.||.. .+.. ++++. ..+...+...|
T Consensus 81 ~vlvEefl~G~---E~sv~~~~dg~~~~~~~~~~~~k~~~~~d~g~~tg~~g~~~p~~~~~~~~~~~~~~~i~~~~~~al 157 (193)
T pfam01071 81 PVVIEEFLEGE---EVSVLAFVDGKTVKPLPPAQDHKRLGEGDTGPNTGGMGAYSPAPVLTPELLERIKETIVEPTVDGL 157 (193)
T ss_pred CEEEEEECCCC---EEEEEEEEECCEEEEEEEEEEEEEECCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 78998720571---655789840997997142176445015788887799724634755898999999999999999999
Q ss_pred HHCCCEEEE---EEEE----CCEEEEEEC
Q ss_conf 984987999---9511----787889836
Q gi|254780696|r 264 RERGLFFTG---IDVI----GDYITEINV 285 (316)
Q Consensus 264 ~~~gl~~~G---iDii----g~~i~EvNv 285 (316)
...|+.|.| ++++ |+||+|||.
T Consensus 158 ~~~g~~~~G~~h~e~~lt~~GP~vIEiN~ 186 (193)
T pfam01071 158 RKEGIPYKGVLYAGLMLTKDGPKVLEFNC 186 (193)
T ss_pred HHCCCCCEEEEEEEEEEECCCEEEEEEEC
T ss_conf 97499968899999999899579999939
No 28
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=99.28 E-value=1.1e-10 Score=90.34 Aligned_cols=242 Identities=15% Similarity=0.227 Sum_probs=139.2
Q ss_pred CEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCH-HHC
Q ss_conf 3189970998884847646799999999889889999541248999899999999998077741265046443521-006
Q gi|254780696|r 5 RNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDL-SQM 83 (316)
Q Consensus 5 ~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L-~~f 83 (316)
+||+++.- .-=-.+|++||++.|+++.++++..=+-. .-.|....+.-..+.+ ....+ ...
T Consensus 13 kkIgIlGg--------GQLg~Mla~aA~~LG~~vivld~~~d~PA--~~vAd~~~~~~~~D~~--------al~~~a~~~ 74 (395)
T PRK09288 13 TRVMLLGS--------GELGKEVAIEAQRLGVEVIAVDRYANAPA--MQVAHRSHVIDMLDGD--------ALRAVIERE 74 (395)
T ss_pred CEEEEECC--------CHHHHHHHHHHHHCCCEEEEECCCCCCCH--HHHCCEEEECCCCCHH--------HHHHHHHHH
T ss_conf 88999898--------89999999999987998999848995944--6728657977878999--------999999983
Q ss_pred --CEEEEECCCCCCHHHHHHHHHHHHHCC-CCEEECCHHHHHHCCCHHHHHHHH-H----HCCCCEEECCHHHHHHHHHH
Q ss_conf --366883288622479999999986235-850411748875256503433454-3----04431000372455688885
Q gi|254780696|r 84 --DVILIRQDPPFNMHYITSTYLLEKINP-ETLIVNNPFWIRNSPEKIFVTEFS-E----LMPPTLISRDITQITRFYLE 155 (316)
Q Consensus 84 --D~i~iR~dPp~d~~yi~~~~~Le~~~~-~~~viN~p~~i~~~~eKl~~~~~~-~----~~P~T~vt~~~~~~~~f~~~ 155 (316)
|+|-.=. -.++.+ .|+.+++ |+.|+-+|.+++.+.||...-+|. + ++|+-....+.+++.++.++
T Consensus 75 ~~DvvT~E~-E~V~~~------~L~~le~~G~~v~Ps~~al~i~qdR~~~k~~~~~~lgIPt~~f~~v~s~~el~~~~~~ 147 (395)
T PRK09288 75 KPDLIVPEI-EAIATD------ALVELEAEGFNVVPTARATRLTMNREGIRRLAAEELGLPTSPYRFADSLEELRAAVEE 147 (395)
T ss_pred CCCEEEECC-CCCCHH------HHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHH
T ss_conf 899899785-447889------9999986893367999999998767899999997469999995470899999999998
Q ss_pred HH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHH---CCCCCCEEECCCCCCCCCEEEEEE---CCEEEEEEEEEC
Q ss_conf 21-43311168854344687448871158899999840---013340021053445682699998---998863212204
Q gi|254780696|r 156 MK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEK---YPEPLMIQSYLPQIRDGDKRILLL---NGKPVGAVNRIP 228 (316)
Q Consensus 156 ~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~---~~~~ii~Qefi~~~~~gD~Rv~vi---~g~~v~a~~R~~ 228 (316)
.| |+|+||..|+.|+|++++... .++...++..... ....+++.+|++ .+.++-|+++ +|++.-+ |
T Consensus 148 lG~P~vlK~~~G~DGKGq~~v~~~-~dl~~a~~~a~~~~~~~~~~~ivE~~v~--f~~E~Svi~aR~~~g~~~~~----~ 220 (395)
T PRK09288 148 IGYPCVVKPVMSSSGKGQSVVRSP-EDIEAAWEYAQEGGRGGAGRVIVEEFID--FDYEITLLTVRAVDGGTHFC----A 220 (395)
T ss_pred HCCCEEEECCCCCCCCCEEEECCH-HHHHHHHHHHHHHCCCCCCCEEEEEEEC--CCEEEEEEEEECCCCCEEEE----C
T ss_conf 298758722415788752896687-8889999999850757897089988853--61799999999699988996----6
Q ss_pred CCCCCCCCCCCCCCE----EEEECCHHHHH----HHHHHHHHHHHCCCEEEEEEEE--CC--EEEEEE
Q ss_conf 568600000014731----11007789999----9999999999849879999511--78--788983
Q gi|254780696|r 229 SEVDNRSNIHAGGKA----ELTKLTKIDLD----ICKRIGESLRERGLFFTGIDVI--GD--YITEIN 284 (316)
Q Consensus 229 ~~~~~r~Nl~~Gg~~----~~~~lt~~~~~----i~~~~~~~L~~~gl~~~GiDii--g~--~i~EvN 284 (316)
.- .|.+..|-. .+..++++..+ ++.+++..|..-|+. +|.+. ++ |+.|+|
T Consensus 221 pv----e~~~~~gil~~s~~Pa~i~~~v~~~a~~ia~~i~~~L~~vGvl--~VEfFv~~d~llvNEiA 282 (395)
T PRK09288 221 PI----GHRQEDGDYRESWQPQPMSPAALEEAQEIAKKVTDALGGRGLF--GVELFVKGDEVYFSEVS 282 (395)
T ss_pred CC----CCEEECCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEE--EEEEEEECCEEEEEEEC
T ss_conf 85----4255334279971577899999999999999999974871448--89999978908999920
No 29
>pfam05770 Ins134_P3_kin Inositol 1, 3, 4-trisphosphate 5/6-kinase. This family consists of several inositol 1, 3, 4-trisphosphate 5/6-kinase proteins. Inositol 1,3,4-trisphosphate is at a branch point in inositol phosphate metabolism. It is dephosphorylated by specific phosphatases to either inositol 3,4-bisphosphate or inositol 1,3-bisphosphate. Alternatively, it is phosphorylated to inositol 1,3,4,6-tetrakisphosphate or inositol 1,3,4,5-tetrakisphosphate by inositol trisphosphate 5/6-kinase.
Probab=99.21 E-value=6.3e-09 Score=78.90 Aligned_cols=239 Identities=18% Similarity=0.310 Sum_probs=135.7
Q ss_pred CCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHHH
Q ss_conf 53318997099888484764679999999988988999954124899989999999999807774126504644352100
Q gi|254780696|r 3 KIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQ 82 (316)
Q Consensus 3 k~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~~ 82 (316)
+...||..|-|=..-+..+. ++..-|.++|.+.--++++.=-.++ .-
T Consensus 6 ~~~~VGYal~~kK~~~f~~~---~f~~~~~~~gi~~v~ID~~~pL~~Q------------------------------GP 52 (307)
T pfam05770 6 KRYLVGYALAEKKIKSFIQP---SLAELARKRGIDLVQLDPSRPLSEQ------------------------------GP 52 (307)
T ss_pred EEEEEEEEECHHHHHHHHHH---HHHHHHHHCCCEEEECCCCCCHHHC------------------------------CC
T ss_conf 23699999877998887479---9999897679679987899984554------------------------------98
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEECCHHHHHHCCCHHHHHHHHH-----------HCCCCEEE-CCHHHHH
Q ss_conf 63668832886224799999999862358504117488752565034334543-----------04431000-3724556
Q gi|254780696|r 83 MDVILIRQDPPFNMHYITSTYLLEKINPETLIVNNPFWIRNSPEKIFVTEFSE-----------LMPPTLIS-RDITQIT 150 (316)
Q Consensus 83 fD~i~iR~dPp~d~~yi~~~~~Le~~~~~~~viN~p~~i~~~~eKl~~~~~~~-----------~~P~T~vt-~~~~~~~ 150 (316)
||+|+=... |......+.-.-..+..+.|+.+|.+|+..-|...+++... .+|+.++. ++.+++.
T Consensus 53 fDvilHKlt---d~~~~~~l~~y~~~hP~v~viDP~~ai~~L~dR~~m~~~v~~l~~~~~~~~v~~P~~v~i~~d~~~~~ 129 (307)
T pfam05770 53 FDIIIHKLT---DKEWRHRLEEFREAHPEVPVLDPPPAIRRLHNRQSMLQVVADLNLSMEDGRFGVPPQVVVMKDASSLS 129 (307)
T ss_pred CEEEEEECC---HHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCHHHHHHHHHHHCCCCCCCEEECCCEEEECCCHHHHH
T ss_conf 269999656---28999999999997899789779999999878999999999810656798383697799728677889
Q ss_pred HHHHHHH---HHHHHCCCCCCCCCEEEEC--CCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCC-CEEEEEECCEEEEEE
Q ss_conf 8888521---4331116885434468744--887115889999984001334002105344568-269999899886321
Q gi|254780696|r 151 RFYLEMK---DIIIKPLYGNGGTGVFRIT--LGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDG-DKRILLLNGKPVGAV 224 (316)
Q Consensus 151 ~f~~~~~---~vViKPl~g~~G~gV~~i~--~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~g-D~Rv~vi~g~~v~a~ 224 (316)
+.+++.| |+|.||+-+.|..+-+.+. -+...+. +-+.|+++|||+. .+| =..|+|+|..+.. +
T Consensus 130 ~~l~~agL~fPlI~KPlvA~Gsa~SH~Malvf~~~gL~--------~L~pP~VlQefvN--H~gvlfKvyVvGd~~~v-v 198 (307)
T pfam05770 130 RAGAKAGLTFPLIAKPLVADGTAKSHEMSLVYDQEGLN--------KLQPPLVLQEFVN--HGGVLFKVYVVGEHVTV-V 198 (307)
T ss_pred HHHHHCCCCCCEEECCHHCCCCCCCCEEEEEECHHHHH--------CCCCCEEEEEEEC--CCCEEEEEEEECCEEEE-E
T ss_conf 99997598676562330025785653478997775762--------2799758898754--78679999996437899-9
Q ss_pred EEECCCC-----------CCC----CCCCCCC-------CEEEEECCHH--HHHHHHHHHHHHHHCCCEEEEEEEE----
Q ss_conf 2204568-----------600----0000147-------3111007789--9999999999999849879999511----
Q gi|254780696|r 225 NRIPSEV-----------DNR----SNIHAGG-------KAELTKLTKI--DLDICKRIGESLRERGLFFTGIDVI---- 276 (316)
Q Consensus 225 ~R~~~~~-----------~~r----~Nl~~Gg-------~~~~~~lt~~--~~~i~~~~~~~L~~~gl~~~GiDii---- 276 (316)
.|.+-.+ -|. ++..... .....++.+. ..++|..+.+.| ||..-|+|+|
T Consensus 199 ~R~Slpn~~~~~~~~~~~~~~f~~vS~~~~~~~~~~~~~~~~~~~~p~~~~~~~la~~LR~~l---gL~LFgfDvI~~~~ 275 (307)
T pfam05770 199 KRRSLPDVSAGTLDRSSGSFRFSQVSNLTASADDAELDKILEIAEMPPDPFLEDLARALRRAL---GLRLFNFDIIRDAG 275 (307)
T ss_pred ECCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHC---CCEEECEEEEEECC
T ss_conf 646777877332346564133100467778862232135652023999899999999999980---99496648999889
Q ss_pred -CC--EEEEEECCCCHHHHH
Q ss_conf -78--788983688303788
Q gi|254780696|r 277 -GD--YITEINVTSPTCIRE 293 (316)
Q Consensus 277 -g~--~i~EvNvtsP~g~~~ 293 (316)
|+ ||+.||.+ || ..+
T Consensus 276 t~~r~~VIDINyF-Pg-Y~~ 293 (307)
T pfam05770 276 TADRYLVIDINYF-PG-YAK 293 (307)
T ss_pred CCCEEEEEEECCC-CC-CCC
T ss_conf 8985899990679-89-888
No 30
>pfam02786 CPSase_L_D2 Carbamoyl-phosphate synthase L chain, ATP binding domain. Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117. The ATP binding domain (this one) has an ATP-grasp fold.
Probab=99.20 E-value=8e-10 Score=84.79 Aligned_cols=162 Identities=17% Similarity=0.180 Sum_probs=99.3
Q ss_pred HCCCC--EEECCHHHHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHH-----HCCCCCCEEECCCCCC
Q ss_conf 04431--00037245568888521-4331116885434468744887115889999984-----0013340021053445
Q gi|254780696|r 136 LMPPT--LISRDITQITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFE-----KYPEPLMIQSYLPQIR 207 (316)
Q Consensus 136 ~~P~T--~vt~~~~~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~-----~~~~~ii~Qefi~~~~ 207 (316)
++|+- ...++.+++.++.++.| |+|+||.+|++|+|+.++.. ..++...++.... .+...+++|+||+..
T Consensus 15 P~~~~~~~~~~s~ee~~~~a~~iG~PvvvKp~~~g~g~G~~~v~~-~~eL~~a~~~a~~~a~~~~~~~~vlvEe~i~g~- 92 (211)
T pfam02786 15 PTVPGTAGPVETEEEALAAAKEIGYPVIIKAAFGGGGLGMGIARN-EEELAELFALALAEAPAAFGNPQVLVEKSLKGP- 92 (211)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCEEEHH-HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCC-
T ss_conf 919987888799999999999859978997377789987512412-778999999998751431699838997404776-
Q ss_pred CCCEEEEEEC---CEEEEEEEEECCCCCCCCCCCCCCCEE--EE-ECCHHHH----HHHHHHHHHHHHCCCE-EEEEEEE
Q ss_conf 6826999989---988632122045686000000147311--10-0778999----9999999999984987-9999511
Q gi|254780696|r 208 DGDKRILLLN---GKPVGAVNRIPSEVDNRSNIHAGGKAE--LT-KLTKIDL----DICKRIGESLRERGLF-FTGIDVI 276 (316)
Q Consensus 208 ~gD~Rv~vi~---g~~v~a~~R~~~~~~~r~Nl~~Gg~~~--~~-~lt~~~~----~i~~~~~~~L~~~gl~-~~GiDii 276 (316)
.++-+-+++ |.++....|..... .+.|...+ +. .++++.. +.|.+++..| |+. .++||++
T Consensus 93 -~ei~v~v~~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~Pa~~l~~~~~e~i~~~a~~~~~~l---g~~G~~~vef~ 163 (211)
T pfam02786 93 -KHIEYQVLRDAHGNCITVCNRECSDQ-----RRTQKSIEVAPSQTLTDEERQMLREAAVKIARHL---GYVGAGTVEFA 163 (211)
T ss_pred -EEEEEEEEEECCCCEEEEEEEEEEEE-----CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHC---CEECCCEEEEE
T ss_conf -58999999827998999996332250-----3358444681799999999999999999987526---44233247899
Q ss_pred ----CC--EEEEEECCCCHHHH-HHHHHCCCCHHHHHHHH
Q ss_conf ----78--78898368830378-89975199989999999
Q gi|254780696|r 277 ----GD--YITEINVTSPTCIR-EIHRNGGENVASLFWDG 309 (316)
Q Consensus 277 ----g~--~i~EvNvtsP~g~~-~~~~~~~~~i~~~i~d~ 309 (316)
++ |++||| +-+.+-. =.+..+|+|+...-+..
T Consensus 164 ~~~~~~~~~~iEvN-pR~~~~~~~t~~~tg~~l~~~~~~~ 202 (211)
T pfam02786 164 LDPFSGEYYFIEMN-TRLQVSHALAEKATGYDLAKEAAKI 202 (211)
T ss_pred EECCCCEEEEEECC-CCCCCHHHHHHHHHCCCHHHHHHHH
T ss_conf 96799959999670-8968347788998794899999999
No 31
>PRK08462 biotin carboxylase; Validated
Probab=99.14 E-value=3e-08 Score=74.48 Aligned_cols=277 Identities=13% Similarity=0.156 Sum_probs=148.6
Q ss_pred CCCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEE-EHHHEEEECCEEEEEEEEEEEECCC-CCEEEECCCCCC-
Q ss_conf 6533189970998884847646799999999889889999-5412489998999999999980777-412650464435-
Q gi|254780696|r 2 KKIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHY-TPDQLYMRDSKIYANTQPLSLDEKK-EQYYSLGEEKII- 78 (316)
Q Consensus 2 kk~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~-~~~dL~~~~g~v~A~~~~i~i~~~~-~~~f~~~~~~~~- 78 (316)
|+++||++- -..--.++++++|++.|++.... ...|-... ..-.|. ..+.+.+.. ..-|- .-...+
T Consensus 2 r~~kkvLIA--------NRGEIA~Ri~ra~~elgi~tVavys~~D~~a~-~v~~ad-~~~~ig~~~~~~sYl-n~~~Ii~ 70 (446)
T PRK08462 2 KELKRILIA--------NRGEIALRAIRTIQEMGKEAIAIYSTADKDAL-YLKYAD-AKICIGGAKSSESYL-NIPAIIS 70 (446)
T ss_pred CCCCEEEEE--------CCHHHHHHHHHHHHHCCCCEEEEECHHHHCCC-HHHHCC-EEEECCCCCCCCCCC-CHHHHHH
T ss_conf 978889998--------96099999999999829969999376771676-287598-989828998433414-8999999
Q ss_pred --CHHHCCEEEEECCC-CCCHHHHHHHHHHHHHCCCCE-EECCHHHHHHCCCHHHHHHHHH----H-CCCCE-EECCHHH
Q ss_conf --21006366883288-622479999999986235850-4117488752565034334543----0-44310-0037245
Q gi|254780696|r 79 --DLSQMDVILIRQDP-PFNMHYITSTYLLEKINPETL-IVNNPFWIRNSPEKIFVTEFSE----L-MPPTL-ISRDITQ 148 (316)
Q Consensus 79 --~L~~fD~i~iR~dP-p~d~~yi~~~~~Le~~~~~~~-viN~p~~i~~~~eKl~~~~~~~----~-~P~T~-vt~~~~~ 148 (316)
.....|+|++=-.. .-|..+ ...++. .|.. +-=+|.+|+...||..+-++.. + +|-+- ..++.++
T Consensus 71 ~a~~~~~dAihPGyGfLSEn~~f---a~~~~~--~Gi~fIGP~~~~i~~~GdK~~ar~~a~~~gvPvvpg~~~~v~~~~e 145 (446)
T PRK08462 71 AAEIFEADAIFPGYGFLSENQNF---VEICSH--HSIKFIGPSVEVMALMSDKSKAKQVMKRAGVPVIPGSDGALKSYEE 145 (446)
T ss_pred HHHHHCCCEEECCCHHHHHCHHH---HHHHHH--CCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCHHH
T ss_conf 99995919898682055408799---999997--7998989599999984095989999998599806786787799999
Q ss_pred HHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHH-----HHHCCCCCCEEECCCCCCCCCEEEEEEC---CE
Q ss_conf 568888521-43311168854344687448871158899999-----8400133400210534456826999989---98
Q gi|254780696|r 149 ITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEML-----FEKYPEPLMIQSYLPQIRDGDKRILLLN---GK 219 (316)
Q Consensus 149 ~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~-----~~~~~~~ii~Qefi~~~~~gD~Rv~vi~---g~ 219 (316)
+.+|.++.| ||++||.+|-||+|+..+ .++.++...++.. ...+...+++.+||+...+ +-|-+++ |.
T Consensus 146 a~~~a~~iGyPV~lKas~GGGGrGmriv-~~~~el~~~~~~a~~ea~~~fg~~~v~vEk~i~~~rH--IEvQvl~D~~Gn 222 (446)
T PRK08462 146 AKKIAKEIGYPVILKAAAGGGGRGMRVV-EDESDLENLYLAAESEALSAFGDGTMYMEKFINNPRH--IEVQILGDKHGN 222 (446)
T ss_pred HHHHHHHHCCCEEEEECCCCCCCEEEEE-CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEE--EEEEEEECCCCC
T ss_conf 9999997299568763278998742895-7679999999999877886058886699985035507--899988528998
Q ss_pred EEEE------EEEECCCCCCCCCCCCCCCEEEEECCHHHH-HHHHHHHHHHHHCCCEEE-EEEEE----C-C-EEEEEEC
Q ss_conf 8632------122045686000000147311100778999-999999999998498799-99511----7-8-7889836
Q gi|254780696|r 220 PVGA------VNRIPSEVDNRSNIHAGGKAELTKLTKIDL-DICKRIGESLRERGLFFT-GIDVI----G-D-YITEINV 285 (316)
Q Consensus 220 ~v~a------~~R~~~~~~~r~Nl~~Gg~~~~~~lt~~~~-~i~~~~~~~L~~~gl~~~-GiDii----g-~-~i~EvNv 285 (316)
+++- +-|..++ .. -.+=...|+++.+ +++..+.+..++.|..=+ -|-++ + + |++|+|
T Consensus 223 ~ihl~eRdCSiQRr~QK--vi------EeaPa~~l~~~~r~~m~~~A~~la~~vgY~gaGTvEFl~d~~~~~fyFlE~N- 293 (446)
T PRK08462 223 VIHVGERDCSMQRRHQK--LI------EESPAVVLDEKTRERLLETAIKAAKAIGYVGAGTFEFLLDSNMKDFYFMEMN- 293 (446)
T ss_pred EEEEECCCCCCCCCCCC--EE------EECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEEEE-
T ss_conf 88853212366346787--58------9789998998999998889999998648365433899980799718999743-
Q ss_pred CCCHHHHH---HHHHCCCCHHHHHHH
Q ss_conf 88303788---997519998999999
Q gi|254780696|r 286 TSPTCIRE---IHRNGGENVASLFWD 308 (316)
Q Consensus 286 tsP~g~~~---~~~~~~~~i~~~i~d 308 (316)
|--..| -+..||+|+.+.-+.
T Consensus 294 --tRlQVEH~VTE~vtGiDLV~~Qi~ 317 (446)
T PRK08462 294 --TRLQVEHTVSEMVSGLDLIEWMIK 317 (446)
T ss_pred --CCCCEECCCCCCCCCCCHHHHHHH
T ss_conf --342100111122148779999999
No 32
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=99.11 E-value=1.2e-07 Score=70.41 Aligned_cols=287 Identities=15% Similarity=0.134 Sum_probs=141.0
Q ss_pred CCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEE-EEEHHHEEEECCEEEEEEEEEEEEC-CCCCEEEECCCC--CC
Q ss_conf 5331899709988848476467999999998898899-9954124899989999999999807-774126504644--35
Q gi|254780696|r 3 KIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIF-HYTPDQLYMRDSKIYANTQPLSLDE-KKEQYYSLGEEK--II 78 (316)
Q Consensus 3 k~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~-~~~~~dL~~~~g~v~A~~~~i~i~~-~~~~~f~~~~~~--~~ 78 (316)
|++||++. + .. -.-++.+++|++.|.+.. ++...|....-- ..|. ..+.+.+ ....+|--.... .-
T Consensus 1 m~~kiLIa-n------rG-eia~ri~ra~~~lGi~tvav~s~~d~~~~~~-~~ad-eav~i~~~~~~~syl~i~~ii~~a 70 (449)
T COG0439 1 MFKKILIA-N------RG-EIAVRIIRACRELGIETVAVYSEADADALHV-ALAD-EAVCIGPAPSADSYLNIDAIIAAA 70 (449)
T ss_pred CCCEEEEE-C------CC-HHHHHHHHHHHHHCCEEEEEECCCCCCCHHH-HHCC-EEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 97369995-5------85-3689999999984985899966100225256-6375-679838865034565188899899
Q ss_pred CHHHCCEEEEECCCCCCHHHHHHHHHHHHHCC-CC-EEECCHHHHHHCCCHHHHHHHHH----HCCCCE--EECCHHHHH
Q ss_conf 21006366883288622479999999986235-85-04117488752565034334543----044310--003724556
Q gi|254780696|r 79 DLSQMDVILIRQDPPFNMHYITSTYLLEKINP-ET-LIVNNPFWIRNSPEKIFVTEFSE----LMPPTL--ISRDITQIT 150 (316)
Q Consensus 79 ~L~~fD~i~iR~dPp~d~~yi~~~~~Le~~~~-~~-~viN~p~~i~~~~eKl~~~~~~~----~~P~T~--vt~~~~~~~ 150 (316)
.....|+++.=-. |-.. .-..-+.+++ +. ++-=+|++++++.+|..+-+... ++|+.. .+.+.+++.
T Consensus 71 ~~~gadai~pGyg--flse---n~~fae~~~~~gl~fiGP~~~~i~~mgdK~~ar~~~~~aGVP~vpgs~~~~~~~ee~~ 145 (449)
T COG0439 71 EETGADAIHPGYG--FLSE---NAAFAEACAEAGLTFIGPSAEAIRRMGDKITARRLMAKAGVPVVPGSDGAVADNEEAL 145 (449)
T ss_pred HHCCCCEECCCCH--HHHC---CHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
T ss_conf 8608766723503--4217---8899999997497510849899997445899999999749995899787768889999
Q ss_pred HHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHH----HCCCC-CCEEECCCCCCCCCEEEEEE-CCE--EE
Q ss_conf 8888521-4331116885434468744887115889999984----00133-40021053445682699998-998--86
Q gi|254780696|r 151 RFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFE----KYPEP-LMIQSYLPQIRDGDKRILLL-NGK--PV 221 (316)
Q Consensus 151 ~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~----~~~~~-ii~Qefi~~~~~gD~Rv~vi-~g~--~v 221 (316)
+..++.| |||+||..|.||+||.++. +...+...++...+ ...++ +++++||..... +-+-++ ||. ++
T Consensus 146 ~~a~~iGyPVivKa~~GgGg~G~r~v~-~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~rh--ievqv~gD~~g~~i 222 (449)
T COG0439 146 AIAEEIGYPVIVKAAAGGGGRGMRVVR-NEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGPRH--IEVQVLGDGHGNVI 222 (449)
T ss_pred HHHHHCCCCEEEEECCCCCCCCEEEEC-CHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCE--EEEEEEECCCCCEE
T ss_conf 999871997899977889965479979-999999999999988887558972786341058846--89999876866589
Q ss_pred EEEEEECCCCCCCCCCCCCCCEEEEECCHHHHH-HHHHHHHHHHHCCCEE-EEEEEE-----CCEEEEEECCCCHH-HHH
Q ss_conf 321220456860000001473111007789999-9999999999849879-999511-----78788983688303-788
Q gi|254780696|r 222 GAVNRIPSEVDNRSNIHAGGKAELTKLTKIDLD-ICKRIGESLRERGLFF-TGIDVI-----GDYITEINVTSPTC-IRE 293 (316)
Q Consensus 222 ~a~~R~~~~~~~r~Nl~~Gg~~~~~~lt~~~~~-i~~~~~~~L~~~gl~~-~GiDii-----g~~i~EvNvtsP~g-~~~ 293 (316)
+...|-.+- -|-+-..+-.+-...++++.++ +...+.+.++.-|-.- .-+.++ +.|++|+| |=-.| ..-
T Consensus 223 ~l~eRdcsi--qrr~qkvieeapsp~~~~e~r~~i~~~a~~a~~~~gY~gagtvEfl~~~~~~~yfiEmN-~Rlqveh~v 299 (449)
T COG0439 223 HLGERDCSI--QRRHQKVIEEAPSPLLTEELREKIGEAAVRAAKLIGYRGAGTVEFLYDSNGEFYFIEMN-TRLQVEHPV 299 (449)
T ss_pred EEEECCCCC--CCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEE-CCCCCCCCC
T ss_conf 998646687--67766155305888899999999999999999863877775699998279987999986-411367630
Q ss_pred HHHHCCCCHHHHHHHHH
Q ss_conf 99751999899999999
Q gi|254780696|r 294 IHRNGGENVASLFWDGI 310 (316)
Q Consensus 294 ~~~~~~~~i~~~i~d~i 310 (316)
.+..+|+|+.+..+...
T Consensus 300 te~vtGiDlv~~qi~ia 316 (449)
T COG0439 300 TEMVTGIDLVKEQIRIA 316 (449)
T ss_pred EEEEHHHHHHHHHHHHH
T ss_conf 10000042899999997
No 33
>PRK07178 acetyl-CoA carboxylase; Validated
Probab=99.10 E-value=8.2e-08 Score=71.60 Aligned_cols=269 Identities=14% Similarity=0.104 Sum_probs=142.0
Q ss_pred CCCCHHHHHHHHHHCCCEEE-EEEHHHEEEE----CCEEEEEEEEEEEECCCCCEE-EECCC-CCCCHHHCCEEEEECCC
Q ss_conf 76467999999998898899-9954124899----989999999999807774126-50464-43521006366883288
Q gi|254780696|r 20 KEDSTFAIALEAQVRGYQIF-HYTPDQLYMR----DSKIYANTQPLSLDEKKEQYY-SLGEE-KIIDLSQMDVILIRQDP 92 (316)
Q Consensus 20 ~~DTT~~Lm~eAq~RGheV~-~~~~~dL~~~----~g~v~A~~~~i~i~~~~~~~f-~~~~~-~~~~L~~fD~i~iR~dP 92 (316)
..---++++++|++.|.+.. +|.+.|-... .++. +.+...+..-| ....- ..-.....|+|++=-..
T Consensus 10 RGEIA~RiiRt~~elgi~tVavys~~D~~a~hv~~ADea------~~ig~~~~~sYln~~~Ii~~A~~~g~dAiHPGYGF 83 (471)
T PRK07178 10 RGEIAVRIVRACAEMGIRSVAIYSEADRHALHVKRADEA------HSIGADPLAGYLNPRKLVNLAVETGCDALHPGYGF 83 (471)
T ss_pred CCHHHHHHHHHHHHCCCCEEEEECHHHCCCHHHHHCCEE------EECCCCHHHHHCCHHHHHHHHHHHCCCEEECCCCH
T ss_conf 869999999999983994899908375668368848888------87188726654499999999999699999778333
Q ss_pred -CCCHHHHHHHHHHHHHCCCCE-EECCHHHHHHCCCHHHHHHHHH-----HCCCCE-EECCHHHHHHHHHHHH-HHHHHC
Q ss_conf -622479999999986235850-4117488752565034334543-----044310-0037245568888521-433111
Q gi|254780696|r 93 -PFNMHYITSTYLLEKINPETL-IVNNPFWIRNSPEKIFVTEFSE-----LMPPTL-ISRDITQITRFYLEMK-DIIIKP 163 (316)
Q Consensus 93 -p~d~~yi~~~~~Le~~~~~~~-viN~p~~i~~~~eKl~~~~~~~-----~~P~T~-vt~~~~~~~~f~~~~~-~vViKP 163 (316)
.-|..+.. .++. .|.. +-=+|++|+...||..+-.+.. .+|-|- -.++.+++.++.++.| ||++|+
T Consensus 84 LSEn~~FA~---~~~~--~gi~FIGPs~~~i~~~GdK~~ar~~a~~~gvPv~pgs~~~v~~~eea~~~A~~iGyPV~lKA 158 (471)
T PRK07178 84 LSENAELAE---ICAE--RGIKFIGPSADVIRRMGDKTEARRSMIKAGVPVTPGSEGNLADIDEALAEAERIGYPVMLKA 158 (471)
T ss_pred HHCCHHHHH---HHHH--CCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 115989999---9997--89989995999999874839899999986998268968865669999999986698158632
Q ss_pred CCCCCCCCEEEECCCCCCHHHHHHHH-----HHHCCCCCCEEECCCCCCCCCEEEEEEC---CEEEEEEEEECCCCCCCC
Q ss_conf 68854344687448871158899999-----8400133400210534456826999989---988632122045686000
Q gi|254780696|r 164 LYGNGGTGVFRITLGDRNFSSLIEML-----FEKYPEPLMIQSYLPQIRDGDKRILLLN---GKPVGAVNRIPSEVDNRS 235 (316)
Q Consensus 164 l~g~~G~gV~~i~~~~~~~~~~~e~~-----~~~~~~~ii~Qefi~~~~~gD~Rv~vi~---g~~v~a~~R~~~~~~~r~ 235 (316)
..|-||+|+..+. ++.++...++.. ...+...+++.+|+++.++ +-|-+++ |.+++-..|--+- =|.
T Consensus 159 a~GGGGrGmrvv~-~~~el~~~~~~~~~EA~~aFg~~~v~lEk~i~~~RH--IEVQilgD~~Gnvihl~eRdCSi--QRr 233 (471)
T PRK07178 159 TSGGGGRGIRRCN-SREELEQNFPRVISEATKAFGSAEVFLEKCIVNPKH--IEVQILADSFGNVVHLFERDCSI--QRR 233 (471)
T ss_pred CCCCCCCCEEEEC-CCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEE--EEEEEEEECCCCEEEEEEEECCC--CCC
T ss_conf 0268766449976-605688999999999998449973687660467628--99999980789888884123465--107
Q ss_pred CCCCCCCEEEEECCHHHHH-HHHHHHHHHHHCCCEEE-EEEEE---CC-EEEEEECCCCHHHH-H---HHHHCCCCHHHH
Q ss_conf 0001473111007789999-99999999998498799-99511---78-78898368830378-8---997519998999
Q gi|254780696|r 236 NIHAGGKAELTKLTKIDLD-ICKRIGESLRERGLFFT-GIDVI---GD-YITEINVTSPTCIR-E---IHRNGGENVASL 305 (316)
Q Consensus 236 Nl~~Gg~~~~~~lt~~~~~-i~~~~~~~L~~~gl~~~-GiDii---g~-~i~EvNvtsP~g~~-~---~~~~~~~~i~~~ 305 (316)
|-..=-.+-...|+++.++ ++..+.+..+..|..=+ -|-++ |. |++||| | -++ | -|..||+|+-+.
T Consensus 234 ~QKvIEeaPa~~l~~~~r~~l~~~A~~la~~v~Y~gaGTvEFlv~~~~~yFlEvN---t-RlQVEH~VTE~vtGiDLV~~ 309 (471)
T PRK07178 234 NQKLIEIAPSPQLTPEQRAYIGDLAVRAAKAVGYENAGTVEFLLADGEVYFMEMN---T-RVQVEHTITEEITGIDIVRE 309 (471)
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCEEEEECC---C-CCCCCCCHHHHHHCCCHHHH
T ss_conf 8732787699988899999998899999996486501269999867947998324---6-66555421366616758999
Q ss_pred HHH
Q ss_conf 999
Q gi|254780696|r 306 FWD 308 (316)
Q Consensus 306 i~d 308 (316)
-+.
T Consensus 310 Qi~ 312 (471)
T PRK07178 310 QIR 312 (471)
T ss_pred HHH
T ss_conf 999
No 34
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=99.10 E-value=1.3e-07 Score=70.36 Aligned_cols=281 Identities=15% Similarity=0.183 Sum_probs=147.8
Q ss_pred CCCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEE-EEEHHHEEEECCEEEEEEEEEEEECC--CCCEEEECCCCCC
Q ss_conf 65331899709988848476467999999998898899-99541248999899999999998077--7412650464435
Q gi|254780696|r 2 KKIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIF-HYTPDQLYMRDSKIYANTQPLSLDEK--KEQYYSLGEEKII 78 (316)
Q Consensus 2 kk~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~-~~~~~dL~~~~g~v~A~~~~i~i~~~--~~~~f~~~~~~~~ 78 (316)
||++||++- -..---+++|++|++.|++.. +|...|-.... .-.|.- .+.+.+. ...+.. -.+.+
T Consensus 3 ~~ikkvLIA--------NRGEIA~Riirt~relgi~tVavys~~D~~~~h-v~~ADe-av~ig~~~~~~sYln--~~~Ii 70 (458)
T PRK12833 3 SRIRTVLVA--------NRGEIAVRVIRAAHELGMRAVAVVSDADRDSLA-ARMADE-AVHIGPSHAAKSYLN--PAAIL 70 (458)
T ss_pred CCCCEEEEE--------CCCHHHHHHHHHHHHCCCCEEEEECHHHCCCHH-HHHCCE-EEEECCCCCCCCCCC--HHHHH
T ss_conf 778789997--------786999999999998399899991857655835-874999-998289870013269--99999
Q ss_pred C---HHHCCEEEEECCC-CCCHHHHHHHHHHHHHCCCCE-EECCHHHHHHCCCHHHHHHHHH----H-CCCCE-EECCHH
Q ss_conf 2---1006366883288-622479999999986235850-4117488752565034334543----0-44310-003724
Q gi|254780696|r 79 D---LSQMDVILIRQDP-PFNMHYITSTYLLEKINPETL-IVNNPFWIRNSPEKIFVTEFSE----L-MPPTL-ISRDIT 147 (316)
Q Consensus 79 ~---L~~fD~i~iR~dP-p~d~~yi~~~~~Le~~~~~~~-viN~p~~i~~~~eKl~~~~~~~----~-~P~T~-vt~~~~ 147 (316)
. ....|+|++=-.. .-|.++-. .++. .|.. +-=+|.+|+.+.||..+-++.. + +|-|- ...+.+
T Consensus 71 ~~A~~~g~dAiHPGYGFLSEna~FA~---~~~~--~gi~fIGPs~~~i~~~GdK~~ar~~a~~~gvPvvpgs~~~v~~~~ 145 (458)
T PRK12833 71 AAARQCGADAIHPGYGFLSENAAFAA---QVEA--AGLIFVGPDAQVIATMGDKARARETARRAGVPTVPGSDGVVASLD 145 (458)
T ss_pred HHHHHHCCCEEECCCCHHHHCHHHHH---HHHH--CCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCHH
T ss_conf 99998299999768662552999999---9997--899899949999998509699999999849996689667667799
Q ss_pred HHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHH-----HHHHCCCCCCEEECCCCCCCCCEEEEEECC--E
Q ss_conf 5568888521-4331116885434468744887115889999-----984001334002105344568269999899--8
Q gi|254780696|r 148 QITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEM-----LFEKYPEPLMIQSYLPQIRDGDKRILLLNG--K 219 (316)
Q Consensus 148 ~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~-----~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~g--~ 219 (316)
++.+|.++.| |+++|+..|-||+|+-.+. ++.++...++. ....+...+++.+|++..++ +-|-++++ .
T Consensus 146 ea~~~a~~iGyPv~iKAs~GGGGrGmriv~-~~~el~~~~~~a~~ea~~~Fg~~~v~iEk~i~~~RH--IEVQvl~D~~~ 222 (458)
T PRK12833 146 AALEVAARIGYPVMIKAAAGGGGRGIRVAH-DAAQLAAELPLAQREAQAAFGDGGVYLERFIARARH--IEVQILGDGEN 222 (458)
T ss_pred HHHHHHHHCCCHHHHHHCCCCCCCCEEEEC-CCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEE--EEEEEEECCCC
T ss_conf 999999865975421332589987107952-641148999999999997269976478761367507--99999854787
Q ss_pred EEEEEEEECCCCCCCCCCCCCCCEEEEECCHHHHH-HHHHHHHHHHHCCCEE-EEEEEE-----CC-EEEEEECCCCHHH
Q ss_conf 86321220456860000001473111007789999-9999999999849879-999511-----78-7889836883037
Q gi|254780696|r 220 PVGAVNRIPSEVDNRSNIHAGGKAELTKLTKIDLD-ICKRIGESLRERGLFF-TGIDVI-----GD-YITEINVTSPTCI 291 (316)
Q Consensus 220 ~v~a~~R~~~~~~~r~Nl~~Gg~~~~~~lt~~~~~-i~~~~~~~L~~~gl~~-~GiDii-----g~-~i~EvNvtsP~g~ 291 (316)
+++...|--+- =|.|-..=-.+-...|+++.++ ++..+....+..|..= +-|-++ |. |++||| | -+
T Consensus 223 ~vhl~eRdCSi--QRr~QKviEeaPsp~l~~~~r~~l~~~a~~la~~v~y~gagTvEFl~d~~~~~fyFlEvN---t-Rl 296 (458)
T PRK12833 223 VVHLFERECSL--QRRRQKILEEAPSPSLTPAQRDALCASATRLARAVGYRGAGTLEYLFDDARGEFYFIEMN---T-RI 296 (458)
T ss_pred EEEEEECCCCC--CCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEEEEE---C-CC
T ss_conf 69985025656--567775588779997899999999889999988533100002666786588968999621---3-64
Q ss_pred H-H---HHHHCCCCHHHHHHH
Q ss_conf 8-8---997519998999999
Q gi|254780696|r 292 R-E---IHRNGGENVASLFWD 308 (316)
Q Consensus 292 ~-~---~~~~~~~~i~~~i~d 308 (316)
+ | -+..||+|+-+.-+.
T Consensus 297 QVEH~VTE~vtGiDLV~~Qi~ 317 (458)
T PRK12833 297 QVEHPVTEAITGIDLVREMLR 317 (458)
T ss_pred CCCCCEEHHHCCCCHHHHHHH
T ss_conf 444421223318859999999
No 35
>pfam02222 ATP-grasp ATP-grasp domain. This family does not contain all known ATP-grasp domain members. This family includes a diverse set of enzymes that possess ATP-dependent carboxylate-amine ligase activity.
Probab=99.08 E-value=1.5e-09 Score=83.00 Aligned_cols=135 Identities=18% Similarity=0.367 Sum_probs=91.6
Q ss_pred HCCCCEEECCHHHHHHHHHHHH-HHHHHCCC-CCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEE
Q ss_conf 0443100037245568888521-43311168-854344687448871158899999840013340021053445682699
Q gi|254780696|r 136 LMPPTLISRDITQITRFYLEMK-DIIIKPLY-GNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRI 213 (316)
Q Consensus 136 ~~P~T~vt~~~~~~~~f~~~~~-~vViKPl~-g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv 213 (316)
++|+....++.+++.+++++.| |+|+||.. |++|+|++++.. +.++...++.+ ...++++++||+ .++++.+
T Consensus 7 ptp~~~~i~~~~d~~~~~~~iGyP~vvKp~~~G~~g~G~~~v~~-~~el~~a~~~~---~~~~~liE~~I~--~~~Ei~~ 80 (171)
T pfam02222 7 PTPRFMAAESLEELIEAGQELGYPCVLKARRGGYDGKGQYVVRS-EADIPQAWEEL---GGGPVIVEEFVP--FDKELSV 80 (171)
T ss_pred CCCCCEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEECC-HHHHHHHHHHC---CCCCEEEEEECC--CCEEEEE
T ss_conf 99995498999999999997099789996110258985289889-99999999855---899579986046--7579998
Q ss_pred EEE---CCEEEE--EEEEECCCCCCCCCCCCCCCEEEEECCHHH----HHHHHHHHHHHHHCCCEEEEEEEE----CC-E
Q ss_conf 998---998863--212204568600000014731110077899----999999999999849879999511----78-7
Q gi|254780696|r 214 LLL---NGKPVG--AVNRIPSEVDNRSNIHAGGKAELTKLTKID----LDICKRIGESLRERGLFFTGIDVI----GD-Y 279 (316)
Q Consensus 214 ~vi---~g~~v~--a~~R~~~~~~~r~Nl~~Gg~~~~~~lt~~~----~~i~~~~~~~L~~~gl~~~GiDii----g~-~ 279 (316)
+++ +|+++. .+......|+++.. ..+..++++. +++|.++++.|--.| ..+||+. |. |
T Consensus 81 ~~~r~~~g~~~~~~~~e~~~~~g~~~~~------~~Pa~~~~~~~~~i~~~a~ki~~aLg~~G--~~~veff~~~dG~~~ 152 (171)
T pfam02222 81 LVVRSVDGETAFYPPVETIQEDGICHES------VAPARVPDSQQAKAQEIAKKIVDELGGVG--IFGVELFVLPDGDLL 152 (171)
T ss_pred EEEECCCCCEEECCCEEEEEECCEEEEE------ECCCCCCHHHHHHHHHHHHHHHHHCCCCC--EEEEEEEECCCCCEE
T ss_conf 7434499989980354668867818987------42888898999999999999999839704--599999993999799
Q ss_pred EEEEE
Q ss_conf 88983
Q gi|254780696|r 280 ITEIN 284 (316)
Q Consensus 280 i~EvN 284 (316)
++|||
T Consensus 153 v~Evn 157 (171)
T pfam02222 153 VNELA 157 (171)
T ss_pred EEEEC
T ss_conf 99964
No 36
>PRK05586 biotin carboxylase; Validated
Probab=98.99 E-value=2.9e-07 Score=67.99 Aligned_cols=282 Identities=13% Similarity=0.120 Sum_probs=143.4
Q ss_pred CCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEE-EHHHEEEECCEEEEEEEEEEEECCC-CCEE-EECCCC-CC
Q ss_conf 533189970998884847646799999999889889999-5412489998999999999980777-4126-504644-35
Q gi|254780696|r 3 KIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHY-TPDQLYMRDSKIYANTQPLSLDEKK-EQYY-SLGEEK-II 78 (316)
Q Consensus 3 k~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~-~~~dL~~~~g~v~A~~~~i~i~~~~-~~~f-~~~~~~-~~ 78 (316)
|++||++- -..---+++|++|++.|.+.... ...|-...- .-.|. ..+.+.+.. ..-| ....-. ..
T Consensus 1 M~~kvLIA--------NRGEIA~Ri~rt~~~lgi~tVavys~~D~~a~h-v~~Ad-e~~~lg~~~~~~sYln~~~ii~~A 70 (447)
T PRK05586 1 MFKKILIA--------NRGEIAVRIIRACREMGIETVAVYSEIDKDALH-VQLAD-EAVCIGPASSKDSYLNIYNILSAT 70 (447)
T ss_pred CCCEEEEE--------CCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHH-HHHCC-EEEECCCCCHHHHHCCHHHHHHHH
T ss_conf 97549998--------987999999999998399599991703367854-76498-998739999565114899999999
Q ss_pred CHHHCCEEEEECCC-CCCHHHHHHHHHHHHHCCCCEEE-CCHHHHHHCCCHHHHHHHHH----H-CCCC-EEECCHHHHH
Q ss_conf 21006366883288-62247999999998623585041-17488752565034334543----0-4431-0003724556
Q gi|254780696|r 79 DLSQMDVILIRQDP-PFNMHYITSTYLLEKINPETLIV-NNPFWIRNSPEKIFVTEFSE----L-MPPT-LISRDITQIT 150 (316)
Q Consensus 79 ~L~~fD~i~iR~dP-p~d~~yi~~~~~Le~~~~~~~vi-N~p~~i~~~~eKl~~~~~~~----~-~P~T-~vt~~~~~~~ 150 (316)
.....|+|++=-.. .-|.++.. ..+. .|..+| =+|.+|+...||..+-++.. + +|-+ -..++.+++.
T Consensus 71 ~~~g~dAihPGYGFLSEna~Fa~---~~~~--~Gi~fIGP~~~~i~~~GdK~~ar~~a~~~gvPv~pg~~~~v~~~~ea~ 145 (447)
T PRK05586 71 VLTGAQAIHPGFGFLSENSKFAK---MCKE--CNIVFIGPDSETIELMGNKSNAREIMKKAGVPVVPGSEGEIENEEEAL 145 (447)
T ss_pred HHHCCCEEECCCCHHHCCHHHHH---HHHH--CCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
T ss_conf 98499899718553223899999---9998--798798959999998538499999999849976568688889999999
Q ss_pred HHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHH-----HHHCCCCCCEEECCCCCCCCCEEEEEEC---CEEE
Q ss_conf 8888521-43311168854344687448871158899999-----8400133400210534456826999989---9886
Q gi|254780696|r 151 RFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEML-----FEKYPEPLMIQSYLPQIRDGDKRILLLN---GKPV 221 (316)
Q Consensus 151 ~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~-----~~~~~~~ii~Qefi~~~~~gD~Rv~vi~---g~~v 221 (316)
++.++.| |+++|+.+|.||+|+..+ .+..++...++.. ..-+...+++.+||+..++ +-|-|++ |.++
T Consensus 146 ~~a~~iGyPv~lKAa~GGGGrGmriv-~~~~el~~~~~~a~~ea~~aFg~~~v~vEk~i~~~RH--IEVQvl~D~~Gn~v 222 (447)
T PRK05586 146 KIAEEIGYPVMVKASAGGGGRGIRIV-RSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENPRH--IEFQILGDNYGNVV 222 (447)
T ss_pred HHHHHCCCCEEEECCCCCCCCEEEEE-CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCE--EEEEEEECCCCCEE
T ss_conf 99986298237630569997736998-9999999999999999998279984688772478717--99999970799888
Q ss_pred EEEEEECCCCCCCCCCCCCCCEEEEECCHHHHH-HHHHHHHHHHHCCCEE-EEEEEE----CC-EEEEEECCCCHHHH-H
Q ss_conf 321220456860000001473111007789999-9999999999849879-999511----78-78898368830378-8
Q gi|254780696|r 222 GAVNRIPSEVDNRSNIHAGGKAELTKLTKIDLD-ICKRIGESLRERGLFF-TGIDVI----GD-YITEINVTSPTCIR-E 293 (316)
Q Consensus 222 ~a~~R~~~~~~~r~Nl~~Gg~~~~~~lt~~~~~-i~~~~~~~L~~~gl~~-~GiDii----g~-~i~EvNvtsP~g~~-~ 293 (316)
+-..|--+- =|.|-..=-.+=...|+++.++ ++..+.+..+..|..= +-|-++ +. |++|+| | -++ |
T Consensus 223 hlgeRdCSi--QRr~QKvIEeaPap~l~~~~r~~m~~~A~~la~~vgY~gaGTvEFl~d~~~~fyFlEvN---t-RlQVE 296 (447)
T PRK05586 223 HLGERDCSL--QRRNQKVLEEAPSPVMTEELRKKMGEIAVKAAKAVNYKNAGTIEFLLDKDGNFYFMEMN---T-RIQVE 296 (447)
T ss_pred EEECCCCCC--CCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEEE---C-CCCCC
T ss_conf 840642466--56886379988999888999999999999888860603332478887589978999334---3-55556
Q ss_pred ---HHHHCCCCHHHHHHH
Q ss_conf ---997519998999999
Q gi|254780696|r 294 ---IHRNGGENVASLFWD 308 (316)
Q Consensus 294 ---~~~~~~~~i~~~i~d 308 (316)
-|..||+|+-+.-+.
T Consensus 297 H~VTE~vtGvDLV~~Qi~ 314 (447)
T PRK05586 297 HPITEMITGVDLVKEQIK 314 (447)
T ss_pred CCCEEECCCCCHHHHHHH
T ss_conf 641100037768999999
No 37
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=98.99 E-value=8.9e-09 Score=77.93 Aligned_cols=240 Identities=17% Similarity=0.264 Sum_probs=143.3
Q ss_pred CEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHHHCC
Q ss_conf 31899709988848476467999999998898899995412489998999999999980777412650464435210063
Q gi|254780696|r 5 RNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQMD 84 (316)
Q Consensus 5 ~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~~fD 84 (316)
++|+++.. .---.+|++||++.|+++.+++|+.=.-. .-.|.-.-+.-.++.. ....-....|
T Consensus 8 ~tIGIlGg--------GQLgrMla~aA~~lG~~v~vldp~~~~PA--~~va~~~~~~~~~D~~-------al~~fa~~~D 70 (377)
T PRK06019 8 KTIGIIGG--------GQLGRMLALAAAPLGYKVIVLDPDADCPA--AQVADRVIVADYDDVA-------ALRELAEQCD 70 (377)
T ss_pred CEEEEECC--------CHHHHHHHHHHHHCCCEEEEECCCCCCCH--HHHCCEEEECCCCCHH-------HHHHHHHCCC
T ss_conf 99999878--------68999999999978998999848984984--7837848986889899-------9999984599
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCEEECCHHHHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHHHHHHHH-HH
Q ss_conf 668832886224799999999862358504117488752565034334543----0443100037245568888521-43
Q gi|254780696|r 85 VILIRQDPPFNMHYITSTYLLEKINPETLIVNNPFWIRNSPEKIFVTEFSE----LMPPTLISRDITQITRFYLEMK-DI 159 (316)
Q Consensus 85 ~i~iR~dPp~d~~yi~~~~~Le~~~~~~~viN~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~~~~-~v 159 (316)
+|-.- .+-+.. -.|+.+++.+.|.=+|++++.+.||+.-=+|.. ++|+-....+.+++.+++++.| |+
T Consensus 71 viT~E------~EnI~~-~~L~~le~~~~v~P~~~al~i~QdR~~eK~~l~~lgiptapf~~v~s~~dl~~~~~~lg~P~ 143 (377)
T PRK06019 71 VITYE------FENVPA-EALDLLAARVPVPPGPDALAIAQDRLTEKQFLDELGIPVAPFALVDSAEDLDAAIADLGLPA 143 (377)
T ss_pred EEEEC------CCCCCH-HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCCCE
T ss_conf 99978------176899-99999970896687989999886279999999976999888067189999999999729976
Q ss_pred HHHCCC-CCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEE---CCEEEEEEEEECCCCCCCC
Q ss_conf 311168-854344687448871158899999840013340021053445682699998---9988632122045686000
Q gi|254780696|r 160 IIKPLY-GNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLL---NGKPVGAVNRIPSEVDNRS 235 (316)
Q Consensus 160 ViKPl~-g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi---~g~~v~a~~R~~~~~~~r~ 235 (316)
|+|+.. |+-|+|.+++.. ..++...++.+ +..++++.+||+ .+.++-|++. +|++.. + |.. -
T Consensus 144 vlKt~~~GYDGKGq~~i~s-~~dl~~a~~~l---~~~~~i~E~~i~--f~~ElSvivaR~~~G~~~~-y---P~~----e 209 (377)
T PRK06019 144 VLKTRRGGYDGKGQWVLRS-EADLDAAWAAL---GSGPCILEEFVP--FEREVSVIVARGRDGEVVF-Y---PLV----E 209 (377)
T ss_pred EEECCCCCCCCCCCEEECC-HHHHHHHHHHC---CCCCEEEEEEEC--CEEEEEEEEEECCCCCEEE-E---CCH----H
T ss_conf 9951334618870189778-88999999865---699889996543--5189999999848999999-4---441----1
Q ss_pred CCCCCCC----EEEEECCHHH----HHHHHHHHHHHHHCCCEEEEEEEE--CC--EEEEEE
Q ss_conf 0001473----1110077899----999999999999849879999511--78--788983
Q gi|254780696|r 236 NIHAGGK----AELTKLTKID----LDICKRIGESLRERGLFFTGIDVI--GD--YITEIN 284 (316)
Q Consensus 236 Nl~~Gg~----~~~~~lt~~~----~~i~~~~~~~L~~~gl~~~GiDii--g~--~i~EvN 284 (316)
|.|..|- ..+..++++. ++++.++++.|-..|++ ||-+- ++ |+.|+-
T Consensus 210 n~h~~gil~~s~~Pa~~~~~~~~~a~~ia~~i~~~l~~vGvl--~VE~F~~~~~llvNEiA 268 (377)
T PRK06019 210 NVHRNGILRTSIAPAPISADLQAQAEEIASRIAEELDYVGVL--AVEFFVTGDGLLVNEIA 268 (377)
T ss_pred CEEECCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEE--EEEEEEECCCEEEEEEC
T ss_conf 477777558998899999999999999999999974876249--99999918938999725
No 38
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=98.90 E-value=1.2e-06 Score=63.96 Aligned_cols=275 Identities=15% Similarity=0.156 Sum_probs=142.5
Q ss_pred CCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEE-EEHHHEEEECCEEEEEEEEEEEECCC--CCEEEECCCC-CC
Q ss_conf 53318997099888484764679999999988988999-95412489998999999999980777--4126504644-35
Q gi|254780696|r 3 KIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFH-YTPDQLYMRDSKIYANTQPLSLDEKK--EQYYSLGEEK-II 78 (316)
Q Consensus 3 k~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~-~~~~dL~~~~g~v~A~~~~i~i~~~~--~~~f~~~~~~-~~ 78 (316)
|++||++- -..---++++++|++.|++... |...|-... ..-.|.- .+.+.+.. +.+.....-. .-
T Consensus 1 M~~kvLIA--------NRGEIA~Ri~rt~~elgi~tvavys~~D~~a~-hv~~Ade-~v~ig~~~~~~sYln~~~Ii~~A 70 (449)
T PRK06111 1 MFQKVLIA--------NRGEIAVRIIRTCQKLGIRTVAIYSEADEDAL-HVKLADE-AYLIGGPRVQESYLNLEKIIEIA 70 (449)
T ss_pred CCCEEEEE--------CCCHHHHHHHHHHHHCCCCEEEECCHHHCCCH-HHHHCCE-EEEECCCCHHHHHCCHHHHHHHH
T ss_conf 97618998--------78799999999999849979999173645683-5874989-88808997454333999999999
Q ss_pred CHHHCCEEEEECCC-CCCHHHHHHHHHHHHHCCCCE-EECCHHHHHHCCCHHHHHHHHH----H-CCCC-EEECCHHHHH
Q ss_conf 21006366883288-622479999999986235850-4117488752565034334543----0-4431-0003724556
Q gi|254780696|r 79 DLSQMDVILIRQDP-PFNMHYITSTYLLEKINPETL-IVNNPFWIRNSPEKIFVTEFSE----L-MPPT-LISRDITQIT 150 (316)
Q Consensus 79 ~L~~fD~i~iR~dP-p~d~~yi~~~~~Le~~~~~~~-viN~p~~i~~~~eKl~~~~~~~----~-~P~T-~vt~~~~~~~ 150 (316)
.-...|+|++=-.. +-|..+-. ..+. .|.. +-=+|++|+...||..+-.+.. + +|-+ -...+.+++.
T Consensus 71 ~~~g~dAIHPGYGFLSEna~FA~---~~~~--~gi~fIGP~~~~i~~~GdK~~ar~~a~~~gvPvvPG~~~~~~~~~ea~ 145 (449)
T PRK06111 71 KKTGAEAIHPGYGLLSENASFAE---RCKE--EGIVFIGPSAEIIAKMGSKIEARRAMQAAGVPVVPGITTALEDAEEAI 145 (449)
T ss_pred HHHCCCEEECCCCCCCCCHHHHH---HHHH--CCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
T ss_conf 98399999779873116989999---9998--899899929999998648699999999839985578677789999999
Q ss_pred HHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHH-----HHHHCCCCCCEEECCCCCCCCCEEEEEEC---CEEE
Q ss_conf 8888521-4331116885434468744887115889999-----98400133400210534456826999989---9886
Q gi|254780696|r 151 RFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEM-----LFEKYPEPLMIQSYLPQIRDGDKRILLLN---GKPV 221 (316)
Q Consensus 151 ~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~-----~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~---g~~v 221 (316)
++.++.| ||++|+.+|-||+|+..+. +..++.+.++. ...-+...+++.+||++..+ +-|-|++ |.++
T Consensus 146 ~~a~~iGyPvliKAa~GGGGrGmriv~-~~~el~~~~~~~~~eA~~~Fg~~~v~iEk~i~~~RH--IEVQvl~D~~Gn~v 222 (449)
T PRK06111 146 AIARQIGYPVMLKASAGGGGIGMQLVE-TEQELTKAFESNKKRAANFFGNGEMYLEKYIEDARH--IEIQLLADTHGNTV 222 (449)
T ss_pred HHHHHCCCCEEEEECCCCCCCCEEEEC-CHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCE--EEEEEEECCCCCEE
T ss_conf 999865980266203589867208957-999999999999999998639960255441357733--79999970688888
Q ss_pred EE------EEEECCCCCCCCCCCCCCCEEEEECCHHHH-HHHHHHHHHHHHCCCEE-EEEEEE----CC-EEEEEECCCC
Q ss_conf 32------122045686000000147311100778999-99999999999849879-999511----78-7889836883
Q gi|254780696|r 222 GA------VNRIPSEVDNRSNIHAGGKAELTKLTKIDL-DICKRIGESLRERGLFF-TGIDVI----GD-YITEINVTSP 288 (316)
Q Consensus 222 ~a------~~R~~~~~~~r~Nl~~Gg~~~~~~lt~~~~-~i~~~~~~~L~~~gl~~-~GiDii----g~-~i~EvNvtsP 288 (316)
+- +-|..++ ..- .+-.-.|+++.+ +++..+.+..+..|..= .-|-+| +. |++|+| |
T Consensus 223 hlgeRdCSiQRr~QK--viE------eaPap~l~~~~r~~~~~~A~~la~~v~Y~g~gTvEFl~d~~~~fyFlEvN---t 291 (449)
T PRK06111 223 YLWERECSVQRRHQK--VIE------EAPSPFLDEETRKAMGEAAVQAAKAIGYTNAGTIEFLVDNQKNFYFLEMN---T 291 (449)
T ss_pred EEECCCCCCCCCCCC--EEE------ECCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEEEEEEECCCCEEEEEEE---C
T ss_conf 830512266357741--699------78999999999999999999998871710246899999489868999534---3
Q ss_pred HHHH-H---HHHHCCCCHHHHHH
Q ss_conf 0378-8---99751999899999
Q gi|254780696|r 289 TCIR-E---IHRNGGENVASLFW 307 (316)
Q Consensus 289 ~g~~-~---~~~~~~~~i~~~i~ 307 (316)
-++ | -+..||+|+-+.-+
T Consensus 292 -RlQVEHpVTE~vtGiDLV~~Qi 313 (449)
T PRK06111 292 -RLQVEHPVTEEITGIDLVEQQL 313 (449)
T ss_pred -CCCCCCCEEEEECCCCHHHHHH
T ss_conf -5444664045553884899999
No 39
>pfam02750 Synapsin_C Synapsin, ATP binding domain. Ca dependent ATP binding in this ATP grasp fold. Function unknown.
Probab=98.89 E-value=5.9e-09 Score=79.10 Aligned_cols=178 Identities=19% Similarity=0.209 Sum_probs=117.2
Q ss_pred CCHHHHHHCCCHHHHH-------------HHHHHCCCCEEECCHHHHHHHHHHH-HHHHHHCCCCCCCCCEEEECCCCCC
Q ss_conf 1748875256503433-------------4543044310003724556888852-1433111688543446874488711
Q gi|254780696|r 116 NNPFWIRNSPEKIFVT-------------EFSELMPPTLISRDITQITRFYLEM-KDIIIKPLYGNGGTGVFRITLGDRN 181 (316)
Q Consensus 116 N~p~~i~~~~eKl~~~-------------~~~~~~P~T~vt~~~~~~~~f~~~~-~~vViKPl~g~~G~gV~~i~~~~~~ 181 (316)
|+..|+-+|-||-|.. .|| +|+.|+..+.. +++-.. -|+|+|-=.+++|-|=.|++.. ..
T Consensus 1 NsL~SiYnf~dKPwvf~~L~~i~k~lG~e~FP-LIeQtyypn~k----em~~~~~fPvVvKvGhah~G~GKvkven~-~~ 74 (203)
T pfam02750 1 NSLHSIYNFCDKPWVFAQLIQIQKKLGAEKFP-LIEQTYYPNHK----EMLTTPTFPVVVKIGHAHSGMGKVKVDNH-HD 74 (203)
T ss_pred CCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC-CCEEECCCCHH----HHCCCCCCCEEEEECCCCCCEEEEEECCH-HH
T ss_conf 96888988425747899999999984866677-53000269877----74258898889997541562358996077-78
Q ss_pred HHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEECCEEEEEEEEECCCCCCCCCCCCCCCE--EEEECCHHHHHHHHHH
Q ss_conf 58899999840013340021053445682699998998863212204568600000014731--1100778999999999
Q gi|254780696|r 182 FSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGKPVGAVNRIPSEVDNRSNIHAGGKA--ELTKLTKIDLDICKRI 259 (316)
Q Consensus 182 ~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~g~~v~a~~R~~~~~~~r~Nl~~Gg~~--~~~~lt~~~~~i~~~~ 259 (316)
+..+.. +..-.+.++-.++||+ . .-|+|+--+|...- |+.|.+-.|.|++|. |++ +.+++|++-+.-+.++
T Consensus 75 fqD~~s-~va~~~~y~T~EPfid-~-kyDiriQKIG~~yk-ay~R~sISgnWK~Nt---GSamLEqi~mteryK~WvD~~ 147 (203)
T pfam02750 75 FQDIAS-VVALTKTYATTEPFID-S-KYDIRVQKIGNNYK-AYMRTSISGNWKANT---GSAMLEQIAMSERYKLWVDTC 147 (203)
T ss_pred HHHHHH-HHHHCCCEEEECCCCC-C-CEEEEEEEHHHHHH-HHEECCCCCCCCCCC---CHHHHHHHHHHHHHHHHHHHH
T ss_conf 888875-7721363588614545-4-25588520000447-661220037854470---378886502368999999999
Q ss_pred HHHHHHCCCEEEEEEEE-C----CEEEEEECCCCHHHHHHHHHCCCCHHHHHHH
Q ss_conf 99999849879999511-7----8788983688303788997519998999999
Q gi|254780696|r 260 GESLRERGLFFTGIDVI-G----DYITEINVTSPTCIREIHRNGGENVASLFWD 308 (316)
Q Consensus 260 ~~~L~~~gl~~~GiDii-g----~~i~EvNvtsP~g~~~~~~~~~~~i~~~i~d 308 (316)
++.+ -||..++||.| | +|++|||=+|-+-+-+-.+..-..||+.++.
T Consensus 148 S~lF--GGLdIcav~ai~~KdGkeyIiEvnds~m~L~gd~qeeDr~~IadlV~~ 199 (203)
T pfam02750 148 SEMF--GGLDICAVEALHGKDGRDYIIEVMDSSMPLIGEHQEEDRQLIAELVVS 199 (203)
T ss_pred HHHC--CCCEEEEEEEEECCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 9873--893079998777688875689962654412220178899999999999
No 40
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=98.89 E-value=8.5e-07 Score=64.95 Aligned_cols=266 Identities=16% Similarity=0.200 Sum_probs=139.0
Q ss_pred CCCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEE-EEEEEECCCCCEEEECCCCCC---CHHHCCEEEEECCCCCC
Q ss_conf 76467999999998898899995412489998999999-999980777412650464435---21006366883288622
Q gi|254780696|r 20 KEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANT-QPLSLDEKKEQYYSLGEEKII---DLSQMDVILIRQDPPFN 95 (316)
Q Consensus 20 ~~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~-~~i~i~~~~~~~f~~~~~~~~---~L~~fD~i~iR~dPp~d 95 (316)
..---+++|++|++.|++........=...-..-.|.- ..+.-......+... ...+ .-...|+|++=-.
T Consensus 10 RGEIA~RiiRa~relGi~tVaVyS~~D~~s~hv~~ADe~~~ig~~~~~~sYLni--~~Ii~~A~~~g~dAIhPGYG---- 83 (497)
T PRK08654 10 RGEIAIRVMRACRELGIKTVAVYSEADKNALFVKYADEAYPIGPAPPSKSYLNM--ERILEVAKKAGAEAIHPGYG---- 83 (497)
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCHHHHCCCCHHHCCEEEECCCCCCCCCCCCH--HHHHHHHHHHCCCEEECCHH----
T ss_conf 879999999999985993999888378548997888989984898832121689--99999999809999957776----
Q ss_pred HHHHHH-HHHHHHHC-CCCE-EECCHHHHHHCCCHHHHHHHHH----H-CCCC-EEECCHHHHHHHHHHHH-HHHHHCCC
Q ss_conf 479999-99998623-5850-4117488752565034334543----0-4431-00037245568888521-43311168
Q gi|254780696|r 96 MHYITS-TYLLEKIN-PETL-IVNNPFWIRNSPEKIFVTEFSE----L-MPPT-LISRDITQITRFYLEMK-DIIIKPLY 165 (316)
Q Consensus 96 ~~yi~~-~~~Le~~~-~~~~-viN~p~~i~~~~eKl~~~~~~~----~-~P~T-~vt~~~~~~~~f~~~~~-~vViKPl~ 165 (316)
+++- ..+-+.++ .|.. +-=+|.+|+...||..+-++.. + +|-+ -...+.+++.++.++.| ||++||.+
T Consensus 84 --FLSEn~~fA~~~~~~Gi~fIGP~~~~I~~~GDK~~ar~la~~~gVPvvPG~~~~v~~~~ea~~~A~~IGyPV~iKAs~ 161 (497)
T PRK08654 84 --FLSENPKFAKACEKEGITFIGPSSNVIEAMGSKINAKKLMKKAGVPVLPGTEEGIEDIEEAKEVAEEIGYPVIIKASA 161 (497)
T ss_pred --HHHHCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECC
T ss_conf --755489999999987999999399999986588999999998099868997566799999999998649845876526
Q ss_pred CCCCCCEEEECCCCCCHHHHHHHH-----HHHCCCCCCEEECCCCCCCCCEEEEEEC---CEEEE------EEEEECCCC
Q ss_conf 854344687448871158899999-----8400133400210534456826999989---98863------212204568
Q gi|254780696|r 166 GNGGTGVFRITLGDRNFSSLIEML-----FEKYPEPLMIQSYLPQIRDGDKRILLLN---GKPVG------AVNRIPSEV 231 (316)
Q Consensus 166 g~~G~gV~~i~~~~~~~~~~~e~~-----~~~~~~~ii~Qefi~~~~~gD~Rv~vi~---g~~v~------a~~R~~~~~ 231 (316)
|-||+|+..+. +...+...++.. ..-+...+++.+||+..++ +-|-+++ |.+++ ++-|..++-
T Consensus 162 GGGGrGmriV~-~~~eL~~~~~~a~~eA~~~fgd~~v~iEk~i~~~RH--IEVQvl~D~~GnvihlgeRdCSiQRr~QKv 238 (497)
T PRK08654 162 GGGGIGMRVVY-NEEELEEAIESTQSIAQSAFGDSTVFIEKYLEKPRH--IEIQVLADKHGNVIHLGDRECSIQRRHQKL 238 (497)
T ss_pred CCCCCCCEEEE-CCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEE--EEEEEEEECCCCEEEECCEECCEEECCCCE
T ss_conf 88888658996-025689999999999887459984579884155537--899999844797867146023436268636
Q ss_pred CCCCCCCCCCCEEEEECCHHHHH-HHHHHHHHHHHCCCEE-EEEEEE---CC-EEEEEE----CCCCHHHHHHHHHCCCC
Q ss_conf 60000001473111007789999-9999999999849879-999511---78-788983----68830378899751999
Q gi|254780696|r 232 DNRSNIHAGGKAELTKLTKIDLD-ICKRIGESLRERGLFF-TGIDVI---GD-YITEIN----VTSPTCIREIHRNGGEN 301 (316)
Q Consensus 232 ~~r~Nl~~Gg~~~~~~lt~~~~~-i~~~~~~~L~~~gl~~-~GiDii---g~-~i~EvN----vtsP~g~~~~~~~~~~~ 301 (316)
.- .+-...|+++.++ ++..+.+..+..|..= +-|.++ |. |++|+| |-+|- -+.+||+|
T Consensus 239 -IE-------eaPap~l~~~~r~~m~~~Av~la~~vgY~gaGTVEFl~d~g~fyFlEmNtRlQVEHpV----TE~vTGiD 306 (497)
T PRK08654 239 -IE-------EAPSPIMTPELRERMGEAAVKAAKAINYENAGTVEFLYSNGNFYFLEMNTRLQVEHPI----TEMVTGID 306 (497)
T ss_pred -EE-------ECCCCCCCHHHHHHHHHHHHHHHHHHCEECCCEEEEEEECCEEEEEEEECCCCCCCCC----CHHHCCCC
T ss_conf -99-------7899989889999999999998887343023327998748839999612442245542----16660871
Q ss_pred HHHHHHH
Q ss_conf 8999999
Q gi|254780696|r 302 VASLFWD 308 (316)
Q Consensus 302 i~~~i~d 308 (316)
+.+.-+.
T Consensus 307 LV~~Qi~ 313 (497)
T PRK08654 307 IVKEQIK 313 (497)
T ss_pred HHHHHHH
T ss_conf 9999999
No 41
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=98.87 E-value=1.6e-06 Score=63.13 Aligned_cols=273 Identities=17% Similarity=0.184 Sum_probs=144.2
Q ss_pred CCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEE-EEHHHEEEECCEEEEEEEEEEEECCC--CCEEEECCCCCC-
Q ss_conf 53318997099888484764679999999988988999-95412489998999999999980777--412650464435-
Q gi|254780696|r 3 KIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFH-YTPDQLYMRDSKIYANTQPLSLDEKK--EQYYSLGEEKII- 78 (316)
Q Consensus 3 k~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~-~~~~dL~~~~g~v~A~~~~i~i~~~~--~~~f~~~~~~~~- 78 (316)
|++||++- -..---++++++|++.|.+... |...|-... ..-.|. ..+.+-+.. ..+... .+.+
T Consensus 1 M~~kvLIA--------NRGEIA~RiiRt~~elgi~tVavys~~D~~a~-hv~~AD-eav~ig~~~~~~sYln~--~~Ii~ 68 (449)
T PRK08591 1 MFDKILIA--------NRGEIALRILRACKELGIKTVAVHSTADRDAL-HVQLAD-EAVCIGPAPSKKSYLNI--PAIIS 68 (449)
T ss_pred CCCEEEEE--------CCCHHHHHHHHHHHHCCCCEEEECCHHHCCCC-HHHHCC-EEEEECCCCCCCCCCCH--HHHHH
T ss_conf 96448896--------78499999999999849949998685752785-288598-88995898843330489--99999
Q ss_pred --CHHHCCEEEEECCC-CCCHHHHHHHHHHHHHCCCCE-EECCHHHHHHCCCHHHHHHHHH-----HCCCCE-EECCHHH
Q ss_conf --21006366883288-622479999999986235850-4117488752565034334543-----044310-0037245
Q gi|254780696|r 79 --DLSQMDVILIRQDP-PFNMHYITSTYLLEKINPETL-IVNNPFWIRNSPEKIFVTEFSE-----LMPPTL-ISRDITQ 148 (316)
Q Consensus 79 --~L~~fD~i~iR~dP-p~d~~yi~~~~~Le~~~~~~~-viN~p~~i~~~~eKl~~~~~~~-----~~P~T~-vt~~~~~ 148 (316)
.-...|+|++=-.. .-|..+-. .++. .|.. +-=+|.+|+...||..+-+... .+|-+- ...+.++
T Consensus 69 ~A~~~g~dAihPGYGFLSEna~FA~---~~~~--~Gi~fIGP~~~~i~~~GdK~~ar~~a~~agVPvvpgs~~~~~~~~e 143 (449)
T PRK08591 69 AAEITGADAIHPGYGFLSENADFAE---ICED--SGFTFIGPSAETIRLMGDKVTAKATMKKAGVPVVPGSDGPVDDEEE 143 (449)
T ss_pred HHHHHCCCEEECCCCHHHCCHHHHH---HHHH--CCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCHHH
T ss_conf 9998299989727424325899999---9998--7999999299999987698999999998399978887665568999
Q ss_pred HHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHH-----HHCCCCCCEEECCCCCCCCCEEEEEEC---CE
Q ss_conf 568888521-433111688543446874488711588999998-----400133400210534456826999989---98
Q gi|254780696|r 149 ITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLF-----EKYPEPLMIQSYLPQIRDGDKRILLLN---GK 219 (316)
Q Consensus 149 ~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~-----~~~~~~ii~Qefi~~~~~gD~Rv~vi~---g~ 219 (316)
+.++.++.| ||++|+..|-||+|+..+ .++.++...++... .-++..+++.+|++...+ +-|-+++ |.
T Consensus 144 a~~~a~~iGyPv~iKA~~GGGGrGmrvv-~~~~el~~~~~~~~~Ea~~aFg~~~v~iEk~i~~~RH--IEVQilgD~~Gn 220 (449)
T PRK08591 144 ALAIAKEIGYPVIIKATAGGGGRGMRVV-RTEAELEKAFSMARAEAKAAFGNPGVYMEKYLENPRH--IEIQVLADGHGN 220 (449)
T ss_pred HHHHHHHCCCCEEEEECCCCCCCEEEEE-CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCE--EEEEEEECCCCC
T ss_conf 9999987499669885268987769998-5678999999999999997379985678771256536--789998638998
Q ss_pred EEE------EEEEECCCCCCCCCCCCCCCEEEEECCHHHH-HHHHHHHHHHHHCCCEEE-EEEEE---CC-EEEEEECCC
Q ss_conf 863------2122045686000000147311100778999-999999999998498799-99511---78-788983688
Q gi|254780696|r 220 PVG------AVNRIPSEVDNRSNIHAGGKAELTKLTKIDL-DICKRIGESLRERGLFFT-GIDVI---GD-YITEINVTS 287 (316)
Q Consensus 220 ~v~------a~~R~~~~~~~r~Nl~~Gg~~~~~~lt~~~~-~i~~~~~~~L~~~gl~~~-GiDii---g~-~i~EvNvts 287 (316)
+++ ++-|..++ .. -.+-...|+++.+ +++..+....+..|..=+ -|-++ |. |.+|+|
T Consensus 221 ~vhl~eRdCSiQRR~QK--vI------EEaPap~l~~~~r~~m~~~A~~la~~v~Y~~aGTvEFL~d~~~fyFlEmN--- 289 (449)
T PRK08591 221 AIHLGERDCSLQRRHQK--VL------EEAPSPAITEELRRKIGEAAVKAAKAIGYRGAGTIEFLYENGEFYFIEMN--- 289 (449)
T ss_pred EEECCCCCCCHHHCCCE--EE------EECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCEEEEEEEE---
T ss_conf 89874775672014613--79------97799878999999999999999997496421038999978908999624---
Q ss_pred CHHHH-H---HHHHCCCCHHHHHH
Q ss_conf 30378-8---99751999899999
Q gi|254780696|r 288 PTCIR-E---IHRNGGENVASLFW 307 (316)
Q Consensus 288 P~g~~-~---~~~~~~~~i~~~i~ 307 (316)
| -++ | -+..||+|+-+.-+
T Consensus 290 t-RlQVEHpVTE~vtGiDLV~~Qi 312 (449)
T PRK08591 290 T-RIQVEHPVTEMITGVDLVKEQI 312 (449)
T ss_pred C-CCCCCCCCCHHHHCCCHHHHHH
T ss_conf 3-4124565226650771999999
No 42
>pfam03133 TTL Tubulin-tyrosine ligase family. Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL). The true physiological function of TTL has so far not been established. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness. On the other hand, 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypep
Probab=98.86 E-value=4.4e-08 Score=73.36 Aligned_cols=75 Identities=25% Similarity=0.512 Sum_probs=49.4
Q ss_pred HHCCCCEEEC-CHHHHHHHHHHHH--HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCC--CCC
Q ss_conf 3044310003-7245568888521--4331116885434468744887115889999984001334002105344--568
Q gi|254780696|r 135 ELMPPTLISR-DITQITRFYLEMK--DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQI--RDG 209 (316)
Q Consensus 135 ~~~P~T~vt~-~~~~~~~f~~~~~--~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~--~~g 209 (316)
++.|+|++.. +.+++.++.++.. -+|+||..|+.|+||..++. ...+... ....++++|+||+.. -+|
T Consensus 42 ~f~P~Tf~Lp~d~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~----~~~i~~~---~~~~~~VvQkYI~~PlLi~g 114 (291)
T pfam03133 42 DFLPRTFILPTDLGEFVDYFEDNERNTWIVKPSASARGRGIRITND----LSQILKQ---IQSRPLVVQKYIERPLLIDG 114 (291)
T ss_pred CEECCEEECHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEECC----HHHHHHH---HCCCCEEEEECCCCCCEECC
T ss_conf 7768897878999999999986899769991177689899698379----9997665---23798897520577510667
Q ss_pred ---CEEEEEE
Q ss_conf ---2699998
Q gi|254780696|r 210 ---DKRILLL 216 (316)
Q Consensus 210 ---D~Rv~vi 216 (316)
|+|+.|+
T Consensus 115 ~KFDlR~yvL 124 (291)
T pfam03133 115 RKFDIRLYVL 124 (291)
T ss_pred EEEEEEEEEE
T ss_conf 4567899999
No 43
>PRK12999 pyruvate carboxylase; Reviewed
Probab=98.80 E-value=5e-06 Score=59.88 Aligned_cols=278 Identities=19% Similarity=0.235 Sum_probs=153.6
Q ss_pred CCCCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEE-EEEHHHEEEECCEEEEEEEEEEEECCC---CCEEEECCCC
Q ss_conf 965331899709988848476467999999998898899-995412489998999999999980777---4126504644
Q gi|254780696|r 1 MKKIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIF-HYTPDQLYMRDSKIYANTQPLSLDEKK---EQYYSLGEEK 76 (316)
Q Consensus 1 mkk~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~-~~~~~dL~~~~g~v~A~~~~i~i~~~~---~~~f~~~~~~ 76 (316)
|++++||++- -...--++++++|++.|.+.- +|...|-.-- ..-.|.-. +.+-... ..+.....-.
T Consensus 2 ~~~~~kvLiA--------NRGEIA~Ri~Ra~~elgi~tVavys~~D~~s~-h~~~ADea-~~ig~~~~p~~sYL~~~~ii 71 (1147)
T PRK12999 2 MKKIKKVLVA--------NRGEIAIRIFRAATELGIRTVAIYSEEDKLSL-HRFKADEA-YLIGEGKGPIEAYLDIDEII 71 (1147)
T ss_pred CCCCCEEEEE--------CCCHHHHHHHHHHHHCCCCEEEEECHHHCCCH-HHHHCCEE-EEECCCCCHHHHHCCHHHHH
T ss_conf 9768789996--------68199999999999839958999784645782-58858856-77289997131112999999
Q ss_pred C-CCHHHCCEEEEECCC-CCCHHHHHHHHHHHHHCCCCE-EECCHHHHHHCCCHHHHHHHHH-----HCCCCE-EECCHH
Q ss_conf 3-521006366883288-622479999999986235850-4117488752565034334543-----044310-003724
Q gi|254780696|r 77 I-IDLSQMDVILIRQDP-PFNMHYITSTYLLEKINPETL-IVNNPFWIRNSPEKIFVTEFSE-----LMPPTL-ISRDIT 147 (316)
Q Consensus 77 ~-~~L~~fD~i~iR~dP-p~d~~yi~~~~~Le~~~~~~~-viN~p~~i~~~~eKl~~~~~~~-----~~P~T~-vt~~~~ 147 (316)
. -.-...|+|++==.- .-|.++-. ..+ +.|.. |-=+|.+|+...||..+-+... .+|-|- ...+.+
T Consensus 72 ~~A~~~~~dAiHPGYGFLSEn~~Fa~---~~~--~~gi~fIGP~~~~i~~~GdK~~ar~~a~~~gvPvvpgs~~~~~~~~ 146 (1147)
T PRK12999 72 RVAKQAGVDAIHPGYGFLSENPEFAR---ACA--EAGITFIGPTAEVLRLLGDKVAARNAAIKAGVPVIPGTEGPIDDLE 146 (1147)
T ss_pred HHHHHHCCCEEECCCCHHHCCHHHHH---HHH--HCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHH
T ss_conf 99999498999779622007999999---999--8789998949999998559999999999839898889899889999
Q ss_pred HHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHH-----HHHCCCCCCEEECCCCCCCCCEEEEEEC---C
Q ss_conf 5568888521-43311168854344687448871158899999-----8400133400210534456826999989---9
Q gi|254780696|r 148 QITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEML-----FEKYPEPLMIQSYLPQIRDGDKRILLLN---G 218 (316)
Q Consensus 148 ~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~-----~~~~~~~ii~Qefi~~~~~gD~Rv~vi~---g 218 (316)
++.+|.++.| |+++|...|-||+|+..+ .+..++...++.. ..-+...+++.+||+..++ +-|-+++ |
T Consensus 147 ~~~~~a~~iGyPv~iKA~~GGGGrGmrvv-~~~~~l~~~~~~a~~EA~~aFG~~~v~~Ek~i~~~rH--iEvQilgD~~G 223 (1147)
T PRK12999 147 EALEFAEEIGYPLMLKASAGGGGRGMRIV-RSEEELEEAFERAKREAKAAFGNDEVYLEKYVENPRH--IEVQILGDKHG 223 (1147)
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCCEEEE-CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCE--EEEEEEECCCC
T ss_conf 99999987199789997778980514895-8989999999999999998369975688550367864--79999962889
Q ss_pred EEEEEEEE------ECCCCCCCCCCCCCCCEEEEECCHHHH-HHHHHHHHHHHHCCCEEEE-EEEE----CC-EEEEEEC
Q ss_conf 88632122------045686000000147311100778999-9999999999984987999-9511----78-7889836
Q gi|254780696|r 219 KPVGAVNR------IPSEVDNRSNIHAGGKAELTKLTKIDL-DICKRIGESLRERGLFFTG-IDVI----GD-YITEINV 285 (316)
Q Consensus 219 ~~v~a~~R------~~~~~~~r~Nl~~Gg~~~~~~lt~~~~-~i~~~~~~~L~~~gl~~~G-iDii----g~-~i~EvNv 285 (316)
.+++-..| ..++= . -.+-.-.|+++.+ ++|..+....+.-|-.=|| |-++ |. |.+|+|
T Consensus 224 nvvhl~eRdCSiQRR~QKv--i------EeaPap~l~~~~r~~l~~~A~~~a~~v~Y~~aGTvEFL~d~~~~fyFiE~N- 294 (1147)
T PRK12999 224 NVVHLYERDCSVQRRHQKV--V------EIAPAPGLSPELREEICEAAVKLARAVGYVNAGTVEFLVDADGNFYFIEVN- 294 (1147)
T ss_pred CEEEECCCCCCHHHCCCEE--E------EECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEEE-
T ss_conf 8887147656432235135--7------866899999999999999999999976976432278998388878999866-
Q ss_pred CCCHHHHH---HHHHCCCCHHHHHH
Q ss_conf 88303788---99751999899999
Q gi|254780696|r 286 TSPTCIRE---IHRNGGENVASLFW 307 (316)
Q Consensus 286 tsP~g~~~---~~~~~~~~i~~~i~ 307 (316)
|--..| -|..||+|+-+.=+
T Consensus 295 --~RlQVEH~VTE~vtGiDlV~~Qi 317 (1147)
T PRK12999 295 --PRIQVEHTVTEMVTGIDIVQSQI 317 (1147)
T ss_pred --CCCCCCCCCHHHEECCCHHHHHH
T ss_conf --56564565302101550899999
No 44
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=98.79 E-value=3.3e-07 Score=67.67 Aligned_cols=263 Identities=17% Similarity=0.238 Sum_probs=145.9
Q ss_pred CHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEE-EECCCCCCCHHHCCEEEEECCCCCCHHHHHH
Q ss_conf 679999999988988999954124899989999999999807774126-5046443521006366883288622479999
Q gi|254780696|r 23 STFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYY-SLGEEKIIDLSQMDVILIRQDPPFNMHYITS 101 (316)
Q Consensus 23 TT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f-~~~~~~~~~L~~fD~i~iR~dPp~d~~yi~~ 101 (316)
|-..-.++..+.|++|...+.+--++..+.-+|....+. +....+- ++..+ ..-|++++=... +..++.
T Consensus 17 sG~qac~aLkeeg~~vvlvnsnpAti~td~e~AD~~y~e--P~~~E~v~~Ii~~-----E~~Dailp~~gg---qt~Ln~ 86 (400)
T COG0458 17 SGTQACKALKEEGYGVVLVNSNPATIMTDPELADKVYIE--PITKEPVEKIIEK-----ERPDAILPTLGG---QTALNA 86 (400)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEEE--CCCHHHHHHHHHH-----CCCCEEECCCCC---CCHHHH
T ss_conf 678999999866975999728872124780005302662--4737889999975-----376626324687---413468
Q ss_pred HHHHHH---HC-CCCE-EECCHHHHHHCCCHHHHHHH-HH---HCCCCEEECCHHHHHHHHHHHH-HHHHHCCCCCCCCC
Q ss_conf 999986---23-5850-41174887525650343345-43---0443100037245568888521-43311168854344
Q gi|254780696|r 102 TYLLEK---IN-PETL-IVNNPFWIRNSPEKIFVTEF-SE---LMPPTLISRDITQITRFYLEMK-DIIIKPLYGNGGTG 171 (316)
Q Consensus 102 ~~~Le~---~~-~~~~-viN~p~~i~~~~eKl~~~~~-~~---~~P~T~vt~~~~~~~~f~~~~~-~vViKPl~g~~G~g 171 (316)
..-|.. ++ -++. |.+++++|+.++||-.+-++ .+ ++| +.+.++.++..++.++.| |+|+||.+|+||.|
T Consensus 87 ~~~l~e~g~l~~~gV~vvgs~~eaI~iaeDr~~fke~m~eigi~~P-~~~~~~~~e~~~~~~~ig~PvIVrP~~~lGG~G 165 (400)
T COG0458 87 ALELKEKGVLEKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVP-SRIAHSVEEADEIADEIGYPVIVKPSFGLGGSG 165 (400)
T ss_pred HHHHHHHCCHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCC
T ss_conf 8998772645644977994587895564209999999998399988-412356777765576369977980685788875
Q ss_pred EEEECCCCCCHHHHHHHHHHH-CCCCCCEEECCCCCCCCCEEEEEE-CCE----EEEEEEEECCCCCCCCCCCCCCCE--
Q ss_conf 687448871158899999840-013340021053445682699998-998----863212204568600000014731--
Q gi|254780696|r 172 VFRITLGDRNFSSLIEMLFEK-YPEPLMIQSYLPQIRDGDKRILLL-NGK----PVGAVNRIPSEVDNRSNIHAGGKA-- 243 (316)
Q Consensus 172 V~~i~~~~~~~~~~~e~~~~~-~~~~ii~Qefi~~~~~gD~Rv~vi-~g~----~v~a~~R~~~~~~~r~Nl~~Gg~~-- 243 (316)
...+. +.+.+..+.+..... +..+++++|+|..-+ ..-.-++ +++ +++.|.+.-+.| +|.|-+.
T Consensus 166 ~~i~~-n~eel~~~~~~~l~~s~~~~vl~eesi~G~k--e~e~ev~rd~~~n~ivvc~men~dp~g-----vhtgdsi~v 237 (400)
T COG0458 166 GGIAY-NEEELEEIIEEGLRASPVEEVLIEESIIGWK--EFEYEVVRDGKDNCIVVCNMENLDPMG-----VHTGDSITV 237 (400)
T ss_pred EEEEE-CHHHHHHHHHHCCCCCCCCCCEEEEEECCCE--EEEEEEEEECCCCEEEEEECCCCCCCC-----CCCCCEEEE
T ss_conf 16871-8999999987322447642001244216856--999999983799879998678656566-----444323652
Q ss_pred -EEEECCHHHHHHHH-HHHHHHHHCCCEEEEEE--E-EC----C-EEEEEECCCCHHHHH-HHHHCCCCHHHHH
Q ss_conf -11007789999999-99999998498799995--1-17----8-788983688303788-9975199989999
Q gi|254780696|r 244 -ELTKLTKIDLDICK-RIGESLRERGLFFTGID--V-IG----D-YITEINVTSPTCIRE-IHRNGGENVASLF 306 (316)
Q Consensus 244 -~~~~lt~~~~~i~~-~~~~~L~~~gl~~~GiD--i-ig----~-~i~EvNvtsP~g~~~-~~~~~~~~i~~~i 306 (316)
-...+++.+.+... ...+.+...|+. .|.+ + +. . |++|||- -+++-.. -..++|-.++..-
T Consensus 238 apaqtl~d~eyq~~r~~~~~iir~igi~-G~~niQ~av~~~~~~~~viEvNp-RvSrssaLaskAtgypia~va 309 (400)
T COG0458 238 APAQTLTDKEYQMLRDAAIKVIREIGIE-GGCNIQFAVDPGGGELYVIEINP-RVSRSSALASKATGYPIAKVA 309 (400)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCC-CCCCEEEEECCCCCEEEEEEECC-CCCCCCHHHHHCCCCHHHHHH
T ss_conf 1455654378899888777788874114-78731489869985599999568-767640315544687699999
No 45
>PRK08463 acetyl-CoA carboxylase; Validated
Probab=98.78 E-value=3.7e-06 Score=60.75 Aligned_cols=267 Identities=15% Similarity=0.163 Sum_probs=140.9
Q ss_pred CCCCHHHHHHHHHHCCCEEE-EEEHHHEEEECCEEEEEEEEEEEECCCCCEE-EECCC-CCCCHHHCCEEEEECCC-CCC
Q ss_conf 76467999999998898899-9954124899989999999999807774126-50464-43521006366883288-622
Q gi|254780696|r 20 KEDSTFAIALEAQVRGYQIF-HYTPDQLYMRDSKIYANTQPLSLDEKKEQYY-SLGEE-KIIDLSQMDVILIRQDP-PFN 95 (316)
Q Consensus 20 ~~DTT~~Lm~eAq~RGheV~-~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f-~~~~~-~~~~L~~fD~i~iR~dP-p~d 95 (316)
..--.++++++|++.|.+.. +|...|-... ..-.|.. .+.+-..+..-| ....- +.-.....|+|++=-.. .-|
T Consensus 10 RGEIA~Riirt~relgi~tVavys~~D~~s~-hv~~Ade-a~~lg~~~~~sYLn~~~Ii~~A~~~gadAiHPGYGFLSEn 87 (478)
T PRK08463 10 RGEIAVRIIRACRDLHIKSVAIYTEPDRECL-HVKIADE-AYRIGTDPIKGYLDVKRIVEIAKACGADAIHPGYGFLSEN 87 (478)
T ss_pred CCHHHHHHHHHHHHCCCCEEEEECHHHCCCC-HHHHCCE-EEECCCCHHHHHCCHHHHHHHHHHHCCCEEECCCCCCCCC
T ss_conf 8699999999999839978999785765783-4775787-6652887345306999999999984999993687623469
Q ss_pred HHHHHHHHHHHHHCCCCE-EECCHHHHHHCCCHHHHHHHHH-----HCCCC--EEECCHHHHHHHHHHHH-HHHHHCCCC
Q ss_conf 479999999986235850-4117488752565034334543-----04431--00037245568888521-433111688
Q gi|254780696|r 96 MHYITSTYLLEKINPETL-IVNNPFWIRNSPEKIFVTEFSE-----LMPPT--LISRDITQITRFYLEMK-DIIIKPLYG 166 (316)
Q Consensus 96 ~~yi~~~~~Le~~~~~~~-viN~p~~i~~~~eKl~~~~~~~-----~~P~T--~vt~~~~~~~~f~~~~~-~vViKPl~g 166 (316)
..+... .+. .|.. +-=+|.+|+...||..+-++.. .+|-| +...+.+++..|.++.| ||++|+..|
T Consensus 88 a~FA~~---~~~--~Gi~FIGPs~~~i~~~GdK~~Ar~~a~~~gVPvvpg~~~~~~~~~~~~~~~a~~iGyPv~lKA~~G 162 (478)
T PRK08463 88 YEFAKA---VED--AGLIFIGPKSEVIRKMGNKNIARKLMAKNGIPIVPGTEKLNSESMEEIKIFARKIGYPVILKASGG 162 (478)
T ss_pred HHHHHH---HHH--CCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCC
T ss_conf 999999---997--899899949999999864899999999839984667677887679999999986598047840359
Q ss_pred CCCCCEEEECCCCCCHHHHHHHH-----HHHCCCCCCEEECCCCCCCCCEEEEEEC---CEEEEEEEE------ECCCCC
Q ss_conf 54344687448871158899999-----8400133400210534456826999989---988632122------045686
Q gi|254780696|r 167 NGGTGVFRITLGDRNFSSLIEML-----FEKYPEPLMIQSYLPQIRDGDKRILLLN---GKPVGAVNR------IPSEVD 232 (316)
Q Consensus 167 ~~G~gV~~i~~~~~~~~~~~e~~-----~~~~~~~ii~Qefi~~~~~gD~Rv~vi~---g~~v~a~~R------~~~~~~ 232 (316)
-||+|+..+ .+..++...++.. ...++..+++.+||+...+ +-|-+++ |.+++-..| ..++
T Consensus 163 GGGrGmrvv-~~~~el~~~~~~a~~ea~~~Fg~~~v~iEk~i~~~RH--iEVQvlgD~~Gnvi~l~eRdCSiQRr~QK-- 237 (478)
T PRK08463 163 GGGRGIRVV-WKEEDLENAFESCKREAKAYFNNDEVFMEKYVVNPRH--IEFQILGDNYGNIIHLCERDCSIQRRHQK-- 237 (478)
T ss_pred CCCCEEEEE-CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEE--EEEEEEEECCCCEEEEEEEECCCCCCCCE--
T ss_conf 998711785-5789999999999999998469985478875024517--89999861799788963051343346751--
Q ss_pred CCCCCCCCCCEEEEECCHHHHH-HHHHHHHHHHHCCCEE-EEEEEE----CC-EEEEEECCCCHHHH-H---HHHHCCCC
Q ss_conf 0000001473111007789999-9999999999849879-999511----78-78898368830378-8---99751999
Q gi|254780696|r 233 NRSNIHAGGKAELTKLTKIDLD-ICKRIGESLRERGLFF-TGIDVI----GD-YITEINVTSPTCIR-E---IHRNGGEN 301 (316)
Q Consensus 233 ~r~Nl~~Gg~~~~~~lt~~~~~-i~~~~~~~L~~~gl~~-~GiDii----g~-~i~EvNvtsP~g~~-~---~~~~~~~~ 301 (316)
.. -.+-.-.|+++.++ ++..+....+..|..= +-|-+| +. |.+|+| | -++ | -|..||+|
T Consensus 238 vi------EeaPap~l~~~~r~~m~~~A~~la~~v~Y~~aGTvEFL~d~~~~fyFlEmN---t-RlQVEHpVTE~vTGvD 307 (478)
T PRK08463 238 VI------EIAPCPGISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDDYNNFYFMEMN---T-RIQVEHGVTEEITGID 307 (478)
T ss_pred EE------EECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEEE---C-CCCCCCCCCCEECCCC
T ss_conf 68------966999878899999988998766630516653389888389978999607---5-5455665411003886
Q ss_pred HHHHHHH
Q ss_conf 8999999
Q gi|254780696|r 302 VASLFWD 308 (316)
Q Consensus 302 i~~~i~d 308 (316)
+-+.-+.
T Consensus 308 LV~~Qi~ 314 (478)
T PRK08463 308 LIVRQIR 314 (478)
T ss_pred HHHHHHH
T ss_conf 8999999
No 46
>TIGR01235 pyruv_carbox pyruvate carboxylase; InterPro: IPR005930 In the postabsorptive state, blood glucose concentration is kept constant by a combination of glycogenolysis and gluconeogenesis. During prolonged fasting, when hepatic glycogen is exhausted, gluconeogenesis becomes the only source of plasma glucose. Gluconeogenesis (the production of new glucose molecules) occurs mainly in liver and, to a small extent, in kidneys. Pyruvate carboxylase (6.4.1.1 from EC), a member of the biotin-dependent enzyme family, catalyses the ATP-dependent carboxylation of pyruvate to oxaloacetate, thus playing a crucial role in gluconeogenesis. ATP + pyruvate + HCO3- = ADP + phosphate + oxaloacetate Most well characterised forms of active enzyme consist of four identical subunits arranged in a tetrahedron-like structure. Each subunit contains three functional domains: the biotin carboxylation domain, the transcarboxylation domain and the biotin carboxyl carrier domain.; GO: 0004736 pyruvate carboxylase activity, 0006094 gluconeogenesis, 0005737 cytoplasm.
Probab=98.78 E-value=1e-07 Score=70.91 Aligned_cols=263 Identities=17% Similarity=0.242 Sum_probs=152.6
Q ss_pred HHHHHHHHHCCCEEE--EEEHHHEEEEC---CEEE--EEEEEEEEECC-CCCEEEECCCCCC-CHHHCCEEEEECCCCCC
Q ss_conf 999999998898899--99541248999---8999--99999998077-7412650464435-21006366883288622
Q gi|254780696|r 25 FAIALEAQVRGYQIF--HYTPDQLYMRD---SKIY--ANTQPLSLDEK-KEQYYSLGEEKII-DLSQMDVILIRQDPPFN 95 (316)
Q Consensus 25 ~~Lm~eAq~RGheV~--~~~~~dL~~~~---g~v~--A~~~~i~i~~~-~~~~f~~~~~~~~-~L~~fD~i~iR~dPp~d 95 (316)
+++=++|.+.|.+-- |-....++++. .+.+ ++.-.+.-+.. -+-+.++.+-.++ ..++.|+|.+==
T Consensus 12 IRvFRAa~EL~i~tVAvYs~eD~~~~Hr~KADEaY~vG~g~~lard~~Pv~AYL~I~eiI~vAk~~~vDaiHPGY----- 86 (1169)
T TIGR01235 12 IRVFRAANELGIRTVAVYSEEDKLSLHRQKADEAYLVGEGPQLARDLKPVEAYLSIDEIIRVAKKNKVDAIHPGY----- 86 (1169)
T ss_pred HHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEECCC-----
T ss_conf 246423101387269996531574557402341001147631010268721304715698996007897770885-----
Q ss_pred HHHHH-HHHHHHHHCC-CCEEE-CCHHHHHHCCCHHHHHHHHH-----HCCCCE-EECCHHHHHHHHHHHH-HHHHHCCC
Q ss_conf 47999-9999986235-85041-17488752565034334543-----044310-0037245568888521-43311168
Q gi|254780696|r 96 MHYIT-STYLLEKINP-ETLIV-NNPFWIRNSPEKIFVTEFSE-----LMPPTL-ISRDITQITRFYLEMK-DIIIKPLY 165 (316)
Q Consensus 96 ~~yi~-~~~~Le~~~~-~~~vi-N~p~~i~~~~eKl~~~~~~~-----~~P~T~-vt~~~~~~~~f~~~~~-~vViKPl~ 165 (316)
-+|+ ....-+.+.+ |...| =+|+.|+...||..+=+.+. .+|-|= -..+.+++.+|.+++| |||+|=.+
T Consensus 87 -GfLSE~~~Fa~~v~~aGi~FIGP~a~~~~~~GdKV~AR~~A~~aGvPvvPgt~Gp~~t~eev~~f~~~~GYPvi~KAs~ 165 (1169)
T TIGR01235 87 -GFLSENSEFADAVVKAGIVFIGPKAEVLDQLGDKVAARNLAIKAGVPVVPGTDGPVETLEEVLDFAKAIGYPVIIKASY 165 (1169)
T ss_pred -CCCCCCHHHHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf -6224887899999868956737974777540576899988887788763688687525999999997569958987216
Q ss_pred CCCCCCEEEECCCCCCHHH-----HHHHHHHHCCCCCCEEECCCCCCCCCEEEEEECC---EEE------EEEEEECCCC
Q ss_conf 8543446874488711588-----9999984001334002105344568269999899---886------3212204568
Q gi|254780696|r 166 GNGGTGVFRITLGDRNFSS-----LIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNG---KPV------GAVNRIPSEV 231 (316)
Q Consensus 166 g~~G~gV~~i~~~~~~~~~-----~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~g---~~v------~a~~R~~~~~ 231 (316)
|-||||.-.+. ++.+... .-|..+.-|+..+++.+||+..++ +=|=++++ .|| |++-|.+++=
T Consensus 166 GGGGRGMRvvR-~~~dv~~~~~rA~sEA~AAFGnd~~yvEklie~pkH--iEvQ~LGD~~GNVVHLFERDCSVQRRhQKV 242 (1169)
T TIGR01235 166 GGGGRGMRVVR-SEEDVADAFQRAKSEAKAAFGNDEVYVEKLIERPKH--IEVQLLGDKHGNVVHLFERDCSVQRRHQKV 242 (1169)
T ss_pred CCCCCCCEEEC-CHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCE--EEEEEEECCCCCEEEEEECCCCCEEECCEE
T ss_conf 88972016860-756799998887688731048980698510248820--789876348898788875077620005507
Q ss_pred CCCCCCCCCCCEEEEECCHHHH-HHHHHHHHHHHHCCCEEEE-EEEE----C-C-EEEEEECCCCHHHHH---HHHHCCC
Q ss_conf 6000000147311100778999-9999999999984987999-9511----7-8-788983688303788---9975199
Q gi|254780696|r 232 DNRSNIHAGGKAELTKLTKIDL-DICKRIGESLRERGLFFTG-IDVI----G-D-YITEINVTSPTCIRE---IHRNGGE 300 (316)
Q Consensus 232 ~~r~Nl~~Gg~~~~~~lt~~~~-~i~~~~~~~L~~~gl~~~G-iDii----g-~-~i~EvNvtsP~g~~~---~~~~~~~ 300 (316)
. -.|=.-.|+++.| +||+.+.+.-++-|=.=|| |-+| + . |.+||| |==..| =|..||+
T Consensus 243 --v------E~APA~~Ls~e~Rd~~~~~AvkLAk~~nY~nAGTvEFL~d~~~G~FYFIEvN---pRiQVEHTvTE~iTGi 311 (1169)
T TIGR01235 243 --V------EVAPAPSLSREVRDEIAEYAVKLAKEVNYINAGTVEFLVDNDTGKFYFIEVN---PRIQVEHTVTEEITGI 311 (1169)
T ss_pred --E------EECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEEC---CCEEEEEEEEEEECCC
T ss_conf --8------8678877888899999999999987428988872488555488937789988---8000115586467340
Q ss_pred CHHHHHH
Q ss_conf 9899999
Q gi|254780696|r 301 NVASLFW 307 (316)
Q Consensus 301 ~i~~~i~ 307 (316)
||-+-=|
T Consensus 312 DiV~aQI 318 (1169)
T TIGR01235 312 DIVQAQI 318 (1169)
T ss_pred HHHHHHH
T ss_conf 3777899
No 47
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=98.73 E-value=3.5e-06 Score=60.92 Aligned_cols=266 Identities=20% Similarity=0.342 Sum_probs=170.4
Q ss_pred HCCCCCCCHHHHHHHHHHCCCEEEEEE--HHHEEEECCEEEEEEEEEEEECCCCCEEE-ECCCC---CCCHHHCCEEEEE
Q ss_conf 848476467999999998898899995--41248999899999999998077741265-04644---3521006366883
Q gi|254780696|r 16 TVKVKEDSTFAIALEAQVRGYQIFHYT--PDQLYMRDSKIYANTQPLSLDEKKEQYYS-LGEEK---IIDLSQMDVILIR 89 (316)
Q Consensus 16 ~i~~~~DTT~~Lm~eAq~RGheV~~~~--~~dL~~~~g~v~A~~~~i~i~~~~~~~f~-~~~~~---~~~L~~fD~i~iR 89 (316)
++..+ +.++.-+++.++.|++.=.++ |...|-. ++-....||+ +.-+. .+.+.+.+.|++-
T Consensus 589 gvEFD-Yc~Vh~~~aLr~~Gye~ImiN~NPETVSTD------------yD~sDrLYFEplt~E~Vm~I~e~E~~~GVIVq 655 (1089)
T TIGR01369 589 GVEFD-YCCVHAVLALREAGYETIMINYNPETVSTD------------YDTSDRLYFEPLTFEDVMNIIELEKPEGVIVQ 655 (1089)
T ss_pred CEEEH-HHHHHHHHHHHHCCCEEEEEECCCCCCCCC------------HHHHHHCCCCCCCCCCCEEHEEECCCCEEEEE
T ss_conf 31205-678999999987299599997789974366------------66510115876350310011000586679997
Q ss_pred CCCCCCHHHHHHHHHHHHHC-CC-CEEE-CCHHHHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHHHHHHHH-HHHH
Q ss_conf 28862247999999998623-58-5041-17488752565034334543----0443100037245568888521-4331
Q gi|254780696|r 90 QDPPFNMHYITSTYLLEKIN-PE-TLIV-NNPFWIRNSPEKIFVTEFSE----LMPPTLISRDITQITRFYLEMK-DIII 161 (316)
Q Consensus 90 ~dPp~d~~yi~~~~~Le~~~-~~-~~vi-N~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~~~~-~vVi 161 (316)
..+-+...+=..++ .| +.|+ =+|++|-++-|----.++.+ +.|+=...+|.+++.+|.++.| ||++
T Consensus 656 ------~GGQtp~nlA~~L~~~GG~~iLGTS~~~ID~AEDR~kFs~~l~~Lgi~QP~~~~a~s~eea~~~A~~iGYPvlv 729 (1089)
T TIGR01369 656 ------FGGQTPLNLAKELEEAGGVPILGTSPESIDRAEDREKFSELLDELGIPQPEWKIATSVEEAKEFASEIGYPVLV 729 (1089)
T ss_pred ------CCCHHHHHHHHHHHHCCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCEECCHHHHHHHHHHCCCCEEE
T ss_conf ------48732678999999708931736885787513186799999971587989885272879999998546992898
Q ss_pred HCCCCCCCCCEEEECCCCCCHHHHHHHHHHHC-CCCCCEEECCCCCCCCCEEEEEECCEEEE-EEEEECCCCCCCCCCCC
Q ss_conf 11688543446874488711588999998400-13340021053445682699998998863-21220456860000001
Q gi|254780696|r 162 KPLYGNGGTGVFRITLGDRNFSSLIEMLFEKY-PEPLMIQSYLPQIRDGDKRILLLNGKPVG-AVNRIPSEVDNRSNIHA 239 (316)
Q Consensus 162 KPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~-~~~ii~Qefi~~~~~gD~Rv~vi~g~~v~-a~~R~~~~~~~r~Nl~~ 239 (316)
-|-|==||++..-+ .++..+...++....-. ..||++=+||+++.+=|+=.+-=|++++. ++ =.+=+ +|=+|.
T Consensus 730 RPSYVLgG~aM~iv-~~~eeL~~yl~~a~~~S~~~PVlidky~e~A~E~dVD~v~Dg~~v~i~gI-~EHiE---~AGVHS 804 (1089)
T TIGR01369 730 RPSYVLGGRAMEIV-YNEEELARYLEEAVEVSPEHPVLIDKYLEDAVEIDVDAVSDGEEVLIPGI-MEHIE---EAGVHS 804 (1089)
T ss_pred CCCCCCCCCCHHEE-CCHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCEEEEEEH-HHHHH---HCCCCC
T ss_conf 16830033621002-67889999999999720899769888528888999989972884899623-12342---136761
Q ss_pred CCCEEE---EECCHHH----HHHHHHHHHHHHHCCCEEEEEEEE--C-C--EEEEEECCCCHHHHH---HHHHCCCCHHH
Q ss_conf 473111---0077899----999999999999849879999511--7-8--788983688303788---99751999899
Q gi|254780696|r 240 GGKAEL---TKLTKID----LDICKRIGESLRERGLFFTGIDVI--G-D--YITEINVTSPTCIRE---IHRNGGENVAS 304 (316)
Q Consensus 240 Gg~~~~---~~lt~~~----~~i~~~~~~~L~~~gl~~~GiDii--g-~--~i~EvNvtsP~g~~~---~~~~~~~~i~~ 304 (316)
|=.... .+|+++. ++.+.++|+.|.=.||. =|=++ + + ||+|+| |=.-|. +.+++|+|+++
T Consensus 805 GDs~~~~Pp~~L~~~~~~~i~~~~~~iA~~L~v~Gl~--NiQf~~~~E~~~yVIE~N---pRASRtVPFvSKa~Gipl~~ 879 (1089)
T TIGR01369 805 GDSTCVLPPQTLSEDIVKRIKDIVRKIAKELNVKGLF--NIQFVVKDEGEVYVIEVN---PRASRTVPFVSKATGIPLAK 879 (1089)
T ss_pred CCHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCE--EEEEEEECCCCEEEEEEC---CCCCCCCCCEEEECCCCHHH
T ss_conf 3053117697778899999999999999870660722--245556169967999971---74206654132103788799
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780696|r 305 LFWDGI 310 (316)
Q Consensus 305 ~i~d~i 310 (316)
.=++.+
T Consensus 880 ~A~~~~ 885 (1089)
T TIGR01369 880 LAVRVM 885 (1089)
T ss_pred HHHHHH
T ss_conf 999997
No 48
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=98.68 E-value=8.7e-06 Score=58.32 Aligned_cols=278 Identities=14% Similarity=0.207 Sum_probs=153.5
Q ss_pred CEEEEEECCHHHCCCCCCCHHHHHHHHHHCC--CEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHHH
Q ss_conf 3189970998884847646799999999889--88999954124899989999999999807774126504644352100
Q gi|254780696|r 5 RNIAIQMNHISTVKVKEDSTFAIALEAQVRG--YQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQ 82 (316)
Q Consensus 5 ~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RG--heV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~~ 82 (316)
|||+++.+-= ---||.+...+-. .++|++ |.+-.+. -.|.+..+...+. ....+. ..-..
T Consensus 1 MkVLviGsGg--------REHAia~kl~~s~~v~~v~~~-PGN~G~~---~~~~~~~i~~~d~-~~l~~~-----a~~~~ 62 (424)
T PRK00885 1 MKVLVIGSGG--------REHALAWKLAQSPLVEKVYVA-PGNAGTA---LEAENVAIDVTDI-EALVAF-----AKEEG 62 (424)
T ss_pred CEEEEECCCH--------HHHHHHHHHHHCCCCCEEEEE-CCCHHHH---HCCEEECCCCCCH-HHHHHH-----HHHCC
T ss_conf 9799988888--------999999999739798989992-8975887---4173651285799-999999-----99849
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHC-CCCEEECCHHH-HHHCCCHHHHHHHHH--HCC--CCEEECCHHHHHHHHHHH
Q ss_conf 636688328862247999999998623-58504117488-752565034334543--044--310003724556888852
Q gi|254780696|r 83 MDVILIRQDPPFNMHYITSTYLLEKIN-PETLIVNNPFW-IRNSPEKIFVTEFSE--LMP--PTLISRDITQITRFYLEM 156 (316)
Q Consensus 83 fD~i~iR~dPp~d~~yi~~~~~Le~~~-~~~~viN~p~~-i~~~~eKl~~~~~~~--~~P--~T~vt~~~~~~~~f~~~~ 156 (316)
.|.+++=-.-| |.. .+-+.++ .+..|+-..+. -+.=..|.|+-+|-+ -|| .-.+.+|.+++.+|++++
T Consensus 63 idlviiGPE~p-----L~~-Gi~D~l~~~gi~vfGP~k~aA~lE~SK~faK~~m~~~~IPTa~~~~f~~~~~A~~~l~~~ 136 (424)
T PRK00885 63 IDLTVVGPEAP-----LVA-GIVDAFRAAGLKIFGPTKAAAQLEGSKAFAKDFMARYGIPTAAYEVFTDAEEAKAYLDEQ 136 (424)
T ss_pred CCEEEECCCHH-----HHH-HHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHC
T ss_conf 99999896678-----873-579999506994689497898876637999999998298987548868999999999857
Q ss_pred H-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHH-----CCCCCCEEECCCCCCCCCEEEEEE-CCEEE---EE---
Q ss_conf 1-43311168854344687448871158899999840-----013340021053445682699998-99886---32---
Q gi|254780696|r 157 K-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEK-----YPEPLMIQSYLPQIRDGDKRILLL-NGKPV---GA--- 223 (316)
Q Consensus 157 ~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~-----~~~~ii~Qefi~~~~~gD~Rv~vi-~g~~v---~a--- 223 (316)
+ |+|+|+-.-.+|+||+ +..+.......++.+... ....++++||+. +-+.-++.+ ||+-+ .+
T Consensus 137 ~~p~VIKaDGLAaGKGV~-V~~~~~ea~~al~~i~~~~~fg~ag~~VvIEE~L~---G~E~S~~a~~DG~~~~~lp~aqD 212 (424)
T PRK00885 137 GAPIVVKADGLAAGKGVV-VAMTLEEAEAAVDDMLAGNKFGDAGARVVIEEFLD---GEEASFFALVDGENVLPLPTAQD 212 (424)
T ss_pred CCCEEEECCCCCCCCCEE-EECCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCC---CCEEEEEEEECCCCCCCCCCCCC
T ss_conf 998899617656777517-63789999999999850332345687289997058---83179999978997264702114
Q ss_pred EEEECCCCCCCCCCCCCCCEEEEE-CCHHHH-----HHHHHHHHHHHHCCCEEEEEEEE-------CCEEEEEECC--CC
Q ss_conf 122045686000000147311100-778999-----99999999999849879999511-------7878898368--83
Q gi|254780696|r 224 VNRIPSEVDNRSNIHAGGKAELTK-LTKIDL-----DICKRIGESLRERGLFFTGIDVI-------GDYITEINVT--SP 288 (316)
Q Consensus 224 ~~R~~~~~~~r~Nl~~Gg~~~~~~-lt~~~~-----~i~~~~~~~L~~~gl~~~GiDii-------g~~i~EvNvt--sP 288 (316)
+.|. -+||-=-|.--=|...+.+ +++++. +|...+.+.|++.|+.|.|+=.. |+||+|.|+- -|
T Consensus 213 hKR~-~dgD~GPNTGGMGa~sP~p~~~~~~~~~i~~~Ii~pt~~~l~~eg~~y~GiLy~GlMit~~GpkVlEyN~RfGDP 291 (424)
T PRK00885 213 HKRA-GDGDTGPNTGGMGAYSPAPVVTEEVHDRVMEEIIEPTVKGMAAEGIPYTGVLYAGLMITKDGPKVIEFNCRFGDP 291 (424)
T ss_pred CCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCEEEEEECCCCCH
T ss_conf 7505-689999889988566788679999999999987999999998579847999877999867975589863134885
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 037889975199989999999988
Q gi|254780696|r 289 TCIREIHRNGGENVASLFWDGIEK 312 (316)
Q Consensus 289 ~g~~~~~~~~~~~i~~~i~d~ie~ 312 (316)
- .+-+--+..-|+...+...++.
T Consensus 292 E-~qvllp~L~~dl~~l~~~~~~g 314 (424)
T PRK00885 292 E-TQVVLPRLKSDLVELLLAAAEG 314 (424)
T ss_pred H-HHHHHHHCCCCHHHHHHHHHCC
T ss_conf 8-8899875236199999987539
No 49
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, ATPase subunit; InterPro: IPR005875 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This family represents PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, which catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. PurK belongs to the ATP grasp superfamily of C-N ligase enzymes. Each subunit of PurK is composed of three domains (A, B, and C). The B domain contains a flexible, glycine-rich loop (B loop, T123-G130) that is disordered in the sulphate-PurK structure and becomes ordered in the MgADP-PurK structure. MgADP is wedged between the B and C domains, as with all members of the ATP grasp superfamily. Other enzymes in this superfamily contain a conserved Omega loop proposed to interact with the B loop, define the specificity of their nonnucleotide substrate, and protect the acyl phosphate intermediate formed from this substrate. PurK contains a minimal Omega loop without conserved residues. In the reaction catalyzed by PurK, carboxyphosphate is the putative acyl phosphate intermediate. The sulphate of the sulphate ion-liganded PurK interacts electrostatically with Arg 242 and the backbone amide group of Asn 245, components of the J loop of the C domain. This sulphate may reveal the location of the carboxyphosphate binding site. Conserved residues within the C-terminus of the C domain define a pocket that is proposed to bind AIR in collaboration with an N-terminal strand loop helix motif in the A domain (P loop, G8-L1). The P loop is proposed to bind the phosphate of AIR on the basis of similar binding sites observed in PurN and PurE and proposed in PurD and PurT, four other enzymes in the purine pathway .; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process, 0009320 phosphoribosylaminoimidazole carboxylase complex.
Probab=98.66 E-value=4e-07 Score=67.09 Aligned_cols=215 Identities=21% Similarity=0.352 Sum_probs=137.2
Q ss_pred HHHHHHHHHCCCEEEEEEHHHEEE----EC--CEEEEEEEEEEEECCCCCEEEECCCCCCCHH-HCCEEEEECCCCCCHH
Q ss_conf 999999998898899995412489----99--8999999999980777412650464435210-0636688328862247
Q gi|254780696|r 25 FAIALEAQVRGYQIFHYTPDQLYM----RD--SKIYANTQPLSLDEKKEQYYSLGEEKIIDLS-QMDVILIRQDPPFNMH 97 (316)
Q Consensus 25 ~~Lm~eAq~RGheV~~~~~~dL~~----~~--g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~-~fD~i~iR~dPp~d~~ 97 (316)
-+|.+||++.|+.+++.+++.=+- .+ ..|.|.+.. .. ....|. ..|+|= |+.+
T Consensus 12 ~M~~~aA~~LG~~~~VL~~~~~~PA~q~Ad~~~~v~a~~~d------~~--------~i~~La~~cDviT------~E~E 71 (386)
T TIGR01161 12 RMLALAAKKLGIKVAVLDPDANSPAKQVADSREHVLASFTD------PE--------AIRELAEACDVIT------FEFE 71 (386)
T ss_pred HHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCEEEEEECC------HH--------HHHHHHHHCCEEE------EEEC
T ss_conf 99999871279589985489897311128985579985148------78--------9999997656554------3101
Q ss_pred HHHHHHHHHHHCC-C--CEEECCHHHHHHCCCHHHHHHHHH----HCCCCEEEC--CHHHHHHHHHHHH-HHHHHCCC-C
Q ss_conf 9999999986235-8--504117488752565034334543----044310003--7245568888521-43311168-8
Q gi|254780696|r 98 YITSTYLLEKINP-E--TLIVNNPFWIRNSPEKIFVTEFSE----LMPPTLISR--DITQITRFYLEMK-DIIIKPLY-G 166 (316)
Q Consensus 98 yi~~~~~Le~~~~-~--~~viN~p~~i~~~~eKl~~~~~~~----~~P~T~vt~--~~~~~~~f~~~~~-~vViKPl~-g 166 (316)
.+... .|+.+.. + +.+.=+|.+|....||+.-=+|.. .+|+-.+.. +.+++..+.++.| |+|+|-.- |
T Consensus 72 hv~~~-~L~~L~~~g~~~~~~P~~~~l~~~~dk~~qK~~L~~~g~~vp~f~~~~~~~~~~~~~~~~~~g~p~VlK~~~gG 150 (386)
T TIGR01161 72 HVDVE-ALEKLEARGDKVKVRPSPEALAIIQDKLTQKQFLQKLGLPVPPFVVIEIKDEEELDSALQELGFPVVLKARRGG 150 (386)
T ss_pred CCCCH-HHHHHHHCCCEEEEECCHHHHHHHHCHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHCCCCEEEEEEECC
T ss_conf 37856-78999835984776038899998836589999999668998841202236842578999873984799842065
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEE---CCEEEEEEEEECCCCCCCCCCCCC--C
Q ss_conf 54344687448871158899999840013340021053445682699998---998863212204568600000014--7
Q gi|254780696|r 167 NGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLL---NGKPVGAVNRIPSEVDNRSNIHAG--G 241 (316)
Q Consensus 167 ~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi---~g~~v~a~~R~~~~~~~r~Nl~~G--g 241 (316)
+=|+|.++|. ++.++...++.+..+ ..++|+.+|++ .+.++-|+|+ +|+... .|. --|+|+- |
T Consensus 151 YDGrGq~~i~-~~~~~~~~~~~~~~~-~~~~~~E~fV~--F~~Elsv~vaR~~~G~~~~----YP~----ven~~~ddag 218 (386)
T TIGR01161 151 YDGRGQFVIK-SEADLPQALKELGDK-EEELIVEEFVP--FERELSVIVARSADGEIAF----YPV----VENIHQDDAG 218 (386)
T ss_pred CCCCCCEEEC-CHHHHHHHHHHCCCC-CEEEEEEECCC--CCEEEEEEEEECCCCCEEE----CCC----EEEEEECCCC
T ss_conf 2773108974-743288999852888-40589852356--2006999999778974888----286----1235652778
Q ss_pred C----EEEE-ECCHHH---HHHHHHHHHHHHHCCCEEEEE
Q ss_conf 3----1110-077899---999999999999849879999
Q gi|254780696|r 242 K----AELT-KLTKID---LDICKRIGESLRERGLFFTGI 273 (316)
Q Consensus 242 ~----~~~~-~lt~~~---~~i~~~~~~~L~~~gl~~~Gi 273 (316)
. ..++ .+.+.. .+.|.+++..+.+ .|.++||
T Consensus 219 Il~~~~aPAPa~p~~~~Q~~~~A~~~A~~~~~-~L~~VG~ 257 (386)
T TIGR01161 219 ILRLVVAPAPAVPDALVQQQKKAQELARRLAE-ELDYVGV 257 (386)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH-HCCCEEE
T ss_conf 77898633777834578999999999999998-6196178
No 50
>COG2308 Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=5.9e-07 Score=65.98 Aligned_cols=206 Identities=21% Similarity=0.270 Sum_probs=131.1
Q ss_pred CCCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHHHCCEEEEECCCCC----C
Q ss_conf 764679999999988988999954124899989999999999807774126504644352100636688328862----2
Q gi|254780696|r 20 KEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQMDVILIRQDPPF----N 95 (316)
Q Consensus 20 ~~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~~fD~i~iR~dPp~----d 95 (316)
.--.+-.+=++-..|-.-+-..+.+||++.+|+++.++.. -+...|+|+=|.|--| +
T Consensus 229 G~yNsaYFEHayLA~~lGv~LvEg~DL~V~Dg~v~mRT~~-------------------Glk~VdViyRRvDd~f~DPL~ 289 (488)
T COG2308 229 GIYNSAYFEHAYLARQLGVELVEGRDLVVRDGRVYMRTTG-------------------GLKRVDVIYRRVDDDFLDPLE 289 (488)
T ss_pred CCCHHHHHHHHHHHHHHCCEEECCCCEEEECCEEEEEECC-------------------CCEEEEEEEEECCCCCCCHHH
T ss_conf 8741788889999997293665267449986889999658-------------------834666899951411168243
Q ss_pred H---HHHHHHHHHHHHCCCCE-EECCHHHHHHCCCHHHHHHHHH------------HCCCCEEECCHHHHHHHHHHHHHH
Q ss_conf 4---79999999986235850-4117488752565034334543------------044310003724556888852143
Q gi|254780696|r 96 M---HYITSTYLLEKINPETL-IVNNPFWIRNSPEKIFVTEFSE------------LMPPTLISRDITQITRFYLEMKDI 159 (316)
Q Consensus 96 ~---~yi~~~~~Le~~~~~~~-viN~p~~i~~~~eKl~~~~~~~------------~~P~T~vt~~~~~~~~f~~~~~~v 159 (316)
. +-+-.-.+++....|.+ +.|-| +---+.+|-.....|+ +-++|+.+..+++....+.+....
T Consensus 290 ~r~DS~lGvpGLveayr~G~VtiaNA~-GtGV~ddka~~~y~P~~~~~ylge~~lL~nv~T~~c~~~~el~~VL~~l~~l 368 (488)
T COG2308 290 FRADSALGVPGLVEAYRAGNVTIANAL-GTGVADDKALYAYVPQMIEYYLGEEPLLPNVPTYWCGEPDELEHVLANLSEL 368 (488)
T ss_pred CCCCCCCCCCHHHHHHHCCCEEEECCC-CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHCHHHH
T ss_conf 376100276279999864757996277-7665554149887799999963733026887734217988899998562542
Q ss_pred HHHCCCCCCCCCEEEEC-CCCCCHHHHHHHHHHHCCCCCCEEECCC-----CCCCC-------CEEEEEECCEE-----E
Q ss_conf 31116885434468744-8871158899999840013340021053-----44568-------26999989988-----6
Q gi|254780696|r 160 IIKPLYGNGGTGVFRIT-LGDRNFSSLIEMLFEKYPEPLMIQSYLP-----QIRDG-------DKRILLLNGKP-----V 221 (316)
Q Consensus 160 ViKPl~g~~G~gV~~i~-~~~~~~~~~~e~~~~~~~~~ii~Qefi~-----~~~~g-------D~Rv~vi~g~~-----v 221 (316)
|+||..|+||.|...=. .+.+...++.+.+.... .+++.|+-+. ...+| |.|++++.++- .
T Consensus 369 ViK~~~~~gg~~~lvGpa~s~~e~a~~~~~i~a~p-~~~IaQ~~~~lST~Pt~v~~~l~pr~vdlR~f~~~~~~~~~v~p 447 (488)
T COG2308 369 VIKPVEGSGGYGMLVGPAASKAELAAFAERIKADP-ENYIAQPVLQLSTVPTFVDGGLAPRHVDLRPFALADRDGVQVMP 447 (488)
T ss_pred EEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCH-HHHCCCCCCCCCCCCEEECCEECCCCCCCEEEEEECCCCEEECC
T ss_conf 67630247887531151238778999999998574-53104500334446567878652354452468997588649733
Q ss_pred EEEEEECCC-CCCCCCCCCCCCEEEE
Q ss_conf 321220456-8600000014731110
Q gi|254780696|r 222 GAVNRIPSE-VDNRSNIHAGGKAELT 246 (316)
Q Consensus 222 ~a~~R~~~~-~~~r~Nl~~Gg~~~~~ 246 (316)
|.+.|+... |+-..|.++||.+..+
T Consensus 448 GGLtRVal~~gs~vvn~sqGG~~KDt 473 (488)
T COG2308 448 GGLTRVALREGSLVVNSSQGGGAKDT 473 (488)
T ss_pred CCEEEEEECCCCEEEECCCCCCCCCE
T ss_conf 61345663378516871568766764
No 51
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=98.62 E-value=9.2e-06 Score=58.18 Aligned_cols=218 Identities=16% Similarity=0.180 Sum_probs=131.5
Q ss_pred HCCEEEEECCCCCCHHHHHHHHHHHHHC-CCCEEECCHH-HHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHHHHHH
Q ss_conf 0636688328862247999999998623-5850411748-8752565034334543----04431000372455688885
Q gi|254780696|r 82 QMDVILIRQDPPFNMHYITSTYLLEKIN-PETLIVNNPF-WIRNSPEKIFVTEFSE----LMPPTLISRDITQITRFYLE 155 (316)
Q Consensus 82 ~fD~i~iR~dPp~d~~yi~~~~~Le~~~-~~~~viN~p~-~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~~ 155 (316)
..|.+++=-.-|.. .+ +-+.++ .+..|+-..+ +-+.=.+|.|+=+|-+ +++.--+.+|.+++.+|+++
T Consensus 63 ~iDLvvvGPE~PL~-~G-----ivD~l~~~gi~vfGP~k~aA~LE~SK~faK~~m~~~~IPTa~~~~f~~~~~A~~~l~~ 136 (415)
T PRK13790 63 NVDWVVIGPEQPLI-DG-----LADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTADYKEVERKKDALTYIEN 136 (415)
T ss_pred CCCEEEECCCHHHH-HH-----HHHHHHCCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHH
T ss_conf 99999989607866-34-----8888643897598949799515126999999999829797772550879999999861
Q ss_pred HH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHH-HCCCCCCEEECCCCCCCCCEEEEEE-CCEEEE---E----EE
Q ss_conf 21-4331116885434468744887115889999984-0013340021053445682699998-998863---2----12
Q gi|254780696|r 156 MK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFE-KYPEPLMIQSYLPQIRDGDKRILLL-NGKPVG---A----VN 225 (316)
Q Consensus 156 ~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~-~~~~~ii~Qefi~~~~~gD~Rv~vi-~g~~v~---a----~~ 225 (316)
++ |+|+|+-.-.+|+||+ +..+.......++.+.. +....+++.||+. +-+.-++.+ ||+.+- + +.
T Consensus 137 ~~~p~VIKaDGLAaGKGV~-V~~~~~eA~~al~~i~~~~~~g~VvIEE~L~---G~E~S~~a~~DG~~~~p~~~~aQDhK 212 (415)
T PRK13790 137 CELPVVVKKDGLAAGKGVI-IADTIEAARSAIEIMYGDEEEGTVVFETFLE---GEEFSLMTFVNGDLAVPFDCIAQDHK 212 (415)
T ss_pred CCCCEEEECCCCCCCCCEE-EECCHHHHHHHHHHHHCCCCCCEEEEEEECC---CCCEEEEEEECCCEEEECCCCCCCCC
T ss_conf 7998899668667899569-9799999999999985555476599987157---86348999973997995775432120
Q ss_pred EECCCCCCCCCCCCCCCEEEEE-CCHHH-----HHHHHHHHHHHHHCCCEEEEEEEE-------CCEEEEEECC--CCHH
Q ss_conf 2045686000000147311100-77899-----999999999999849879999511-------7878898368--8303
Q gi|254780696|r 226 RIPSEVDNRSNIHAGGKAELTK-LTKID-----LDICKRIGESLRERGLFFTGIDVI-------GDYITEINVT--SPTC 290 (316)
Q Consensus 226 R~~~~~~~r~Nl~~Gg~~~~~~-lt~~~-----~~i~~~~~~~L~~~gl~~~GiDii-------g~~i~EvNvt--sP~g 290 (316)
|. -+||-=-|.--=|...+.+ ++++. ++|...+.+.|++.|+.|.||=.. |+||+|.|+- -|-
T Consensus 213 R~-~dgD~GPNTGGMGaysp~p~~~~~~~~~~~~~I~~p~~~~l~~eg~~y~GvLy~GlMlt~~GpkVlEyN~RfGDPE- 290 (415)
T PRK13790 213 RA-FDHDEGPNTGGMGAYCPVPHISDDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTKDGPKVIEFNARFGDPE- 290 (415)
T ss_pred CC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCEEEEEEEECCCCH-
T ss_conf 24-6899999999875667774469899999998708999999985599848998877998689866999874118922-
Q ss_pred HHHHHHHCCCCHHHHHHHHHH
Q ss_conf 788997519998999999998
Q gi|254780696|r 291 IREIHRNGGENVASLFWDGIE 311 (316)
Q Consensus 291 ~~~~~~~~~~~i~~~i~d~ie 311 (316)
.+-+--...-|+...+.+..+
T Consensus 291 ~q~iLp~L~~Dl~~~~~~~~~ 311 (415)
T PRK13790 291 AQVLLSRMESDLMQHIIDLDE 311 (415)
T ss_pred HHHHHHHCCCHHHHHHHHHHC
T ss_conf 888987605519999999975
No 52
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.62 E-value=1.5e-05 Score=56.79 Aligned_cols=283 Identities=16% Similarity=0.220 Sum_probs=146.0
Q ss_pred CCCEEEEEECCHHHCCCC---CCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCC
Q ss_conf 533189970998884847---64679999999988988999954124899989999999999807774126504644352
Q gi|254780696|r 3 KIRNIAIQMNHISTVKVK---EDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIID 79 (316)
Q Consensus 3 k~~kI~fimDpi~~i~~~---~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~ 79 (316)
.++||+++..-+-.+--. -.+...-+++.++.|+++-..+++=-++.-..-.|.--.+ .+-...+. .+.+.
T Consensus 6 ~ikkvLviGsGp~~IGqa~EfDysg~qa~~al~e~g~~vilvN~NpaTv~Td~~~ad~vY~--ePlt~e~v----~~Ii~ 79 (1063)
T PRK05294 6 DIKKILIIGSGPIVIGQACEFDYSGTQACKALREEGYRVVLVNSNPATIMTDPEMADATYI--EPITPEFV----EKIIE 79 (1063)
T ss_pred CCCEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHCCCCCCCCEEEE--CCCCHHHH----HHHHH
T ss_conf 8788999898825103723326569999999998699899987985441078776643787--27989999----99999
Q ss_pred HHHCCEEEEECCCCCCHHHHHHHHHHHHH---C-CCCEEE-CCHHHHHHCCCHH-HHH---HHHHHCCCCEEECCHHHHH
Q ss_conf 10063668832886224799999999862---3-585041-1748875256503-433---4543044310003724556
Q gi|254780696|r 80 LSQMDVILIRQDPPFNMHYITSTYLLEKI---N-PETLIV-NNPFWIRNSPEKI-FVT---EFSELMPPTLISRDITQIT 150 (316)
Q Consensus 80 L~~fD~i~iR~dPp~d~~yi~~~~~Le~~---~-~~~~vi-N~p~~i~~~~eKl-~~~---~~~~~~P~T~vt~~~~~~~ 150 (316)
..+-|.|+.--. -+..++...-|... + .++.++ -++.+|..+.|.- +.. +...++|+..+.++.+++.
T Consensus 80 ~E~Pd~il~~~G---GQtaLnla~~L~~~GiL~~~~v~lLGt~~~~I~~aedR~~F~~~l~~i~~p~~~s~~~~s~~ea~ 156 (1063)
T PRK05294 80 KERPDAILPTMG---GQTALNLALELAESGVLEKYGVELIGAKLEAIDKAEDRELFKEAMKKIGLPVPRSGIAHTMEEAL 156 (1063)
T ss_pred HHCCCEEEECCC---CHHHHHHHHHHHHCCCHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCHHCCCHHHHH
T ss_conf 759997886677---80599999999975967764972756999999977789999999997699999725309999999
Q ss_pred HHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHC-CCCCCEEECCCCCCCCCEEEEEE-CCE----EEEE
Q ss_conf 8888521-433111688543446874488711588999998400-13340021053445682699998-998----8632
Q gi|254780696|r 151 RFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKY-PEPLMIQSYLPQIRDGDKRILLL-NGK----PVGA 223 (316)
Q Consensus 151 ~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~-~~~ii~Qefi~~~~~gD~Rv~vi-~g~----~v~a 223 (316)
+|.++.| ||++.|.+-.||.|-. +..++..+...++...... ..++++++||...+ ++-+-|+ |++ .+|.
T Consensus 157 ~~a~~igyPvivRps~~LGG~g~~-i~~n~~eL~~~~~~~~~~S~~~qvLie~sl~gwk--Eie~ev~rD~~~n~i~v~~ 233 (1063)
T PRK05294 157 EVAEEIGYPVIIRPSFTLGGTGGG-IAYNREELEEIVERGLDLSPTTEVLIEESLLGWK--EYEMEVMRDKADNCIIVCS 233 (1063)
T ss_pred HHHHHCCCCEEEEECCCCCCCCCE-EECCHHHHHHHHHHHHHHCCCCCEEEEHHCCCCE--EEEEEEEEECCCCEEEEEE
T ss_conf 999865998899844216787640-4349999999999999619998689661117988--9999999818999899954
Q ss_pred EEEECCCCCCCCCCCCCCCEEE---EECCHHHHH----HHHHHHHHHHHCCCE--EEEEEE-E---C--CEEEEEECCCC
Q ss_conf 1220456860000001473111---007789999----999999999984987--999951-1---7--87889836883
Q gi|254780696|r 224 VNRIPSEVDNRSNIHAGGKAEL---TKLTKIDLD----ICKRIGESLRERGLF--FTGIDV-I---G--DYITEINVTSP 288 (316)
Q Consensus 224 ~~R~~~~~~~r~Nl~~Gg~~~~---~~lt~~~~~----i~~~~~~~L~~~gl~--~~GiDi-i---g--~~i~EvNvtsP 288 (316)
|.-+-+ .-+|.|-+... .+|++++.+ .+.+++..| |+- .+-|-+ + + .||+||| |
T Consensus 234 mEnidp-----~GIHtGDSi~vaP~qTL~d~e~q~lR~~a~kI~~~L---~iv~G~~NiQfA~~p~~~~~~VIEvN---P 302 (1063)
T PRK05294 234 IENIDP-----MGVHTGDSITVAPAQTLTDKEYQMLRDASIAILREI---GVETGGSNVQFAVNPKDGRYVVIEMN---P 302 (1063)
T ss_pred ECCCCC-----CCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHC---CCCCCCEEEEEEECCCCCCEEEEECC---C
T ss_conf 113545-----645666725356886589899999999999999982---95736447999874899848999637---7
Q ss_pred HHHH---HHHHHCCCCHHHHHHH
Q ss_conf 0378---8997519998999999
Q gi|254780696|r 289 TCIR---EIHRNGGENVASLFWD 308 (316)
Q Consensus 289 ~g~~---~~~~~~~~~i~~~i~d 308 (316)
---| =..+++|.++|.....
T Consensus 303 R~SRssalaSKaTGyPiA~vaak 325 (1063)
T PRK05294 303 RVSRSSALASKATGYPIAKVAAK 325 (1063)
T ss_pred CCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 50010688888738878999999
No 53
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=98.61 E-value=1.1e-06 Score=64.31 Aligned_cols=231 Identities=17% Similarity=0.270 Sum_probs=131.5
Q ss_pred HHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHHHCCEEEEECCCCCCHHHHHHHH
Q ss_conf 79999999988988999954124899989999999999807774126504644352100636688328862247999999
Q gi|254780696|r 24 TFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQMDVILIRQDPPFNMHYITSTY 103 (316)
Q Consensus 24 T~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~~fD~i~iR~dPp~d~~yi~~~~ 103 (316)
-.+|..||++.|+++++++|+-=+- -+.+..-.+... |.=.+....-....|+|=. +.+-+...
T Consensus 13 grMm~~aa~~lG~~v~vLdp~~~~P-----A~~va~~~i~~~----~dD~~al~ela~~~DViT~------EfE~V~~~- 76 (375)
T COG0026 13 GRMMALAAARLGIKVIVLDPDADAP-----AAQVADRVIVAA----YDDPEALRELAAKCDVITY------EFENVPAE- 76 (375)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCCC-----HHHCCCCEEECC----CCCHHHHHHHHHHCCEEEE------EECCCCHH-
T ss_conf 9999999986497799956999996-----334143154157----7888999999862988998------51469889-
Q ss_pred HHHHHCCCCEEECCHHHHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHHHHHHHH-HHHHHCCC-CCCCCCEEEECC
Q ss_conf 99862358504117488752565034334543----0443100037245568888521-43311168-854344687448
Q gi|254780696|r 104 LLEKINPETLIVNNPFWIRNSPEKIFVTEFSE----LMPPTLISRDITQITRFYLEMK-DIIIKPLY-GNGGTGVFRITL 177 (316)
Q Consensus 104 ~Le~~~~~~~viN~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~~~~-~vViKPl~-g~~G~gV~~i~~ 177 (316)
.|+.+...+.+.=+|++++...||+.-=+|.. ++|+-.+..+.+++..+++..| +.|+|... |+-|+|.+++..
T Consensus 77 aL~~l~~~~~v~p~~~~l~~~qdR~~eK~~l~~~Gi~va~~~~v~~~~el~~~~~~~g~p~VlKtr~gGYDGkGQ~~i~~ 156 (375)
T COG0026 77 ALEKLAASVKVFPSPDALRIAQDRLVEKQFLDKAGLPVAPFQVVDSAEELDAAAADLGFPAVLKTRRGGYDGKGQWRIRS 156 (375)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEC
T ss_conf 99999961676999899887766899999999769999982785798899999997599569983226566887089407
Q ss_pred CCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEE---CCEEEEEEEEECCCCCCCCCCCCCCCE----EEEECCH
Q ss_conf 871158899999840013340021053445682699998---998863212204568600000014731----1100778
Q gi|254780696|r 178 GDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLL---NGKPVGAVNRIPSEVDNRSNIHAGGKA----ELTKLTK 250 (316)
Q Consensus 178 ~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi---~g~~v~a~~R~~~~~~~r~Nl~~Gg~~----~~~~lt~ 250 (316)
. .........+... ..+ ++.+|++ .++++-|++. ||++.. .|. --|+|..|-. .+..+++
T Consensus 157 ~-~~~~~~~~~~~~~-~~~-vlE~fV~--F~~EiSvi~aR~~~G~~~~----yP~----~eN~h~~gIl~~siaPa~i~~ 223 (375)
T COG0026 157 D-ADLELRAAGLAEG-GVP-VLEEFVP--FEREISVIVARSNDGEVAF----YPV----AENVHRNGILRTSIAPARIPD 223 (375)
T ss_pred C-CCCHHHHHHHHCC-CCE-EEEEECC--CCEEEEEEEEECCCCCEEE----ECC----CCEEEECCEEEEEEECCCCCH
T ss_conf 0-1023567665136-863-6886035--6648999999858997898----066----210133678999972376898
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEE---EEE--CC---EEEEEE
Q ss_conf 99999999999999849879999---511--78---788983
Q gi|254780696|r 251 IDLDICKRIGESLRERGLFFTGI---DVI--GD---YITEIN 284 (316)
Q Consensus 251 ~~~~i~~~~~~~L~~~gl~~~Gi---Dii--g~---~i~EvN 284 (316)
...+-|++++..+.+ .|.++|| -+- .+ ++.|+-
T Consensus 224 ~~~~~A~~~a~~i~~-~L~yvGVl~vE~Fv~~dg~llvNEiA 264 (375)
T COG0026 224 DLQAQAEEMAKKIAE-ELDYVGVLAVEFFVTPDGELLVNEIA 264 (375)
T ss_pred HHHHHHHHHHHHHHH-HCCCEEEEEEEEEEECCCCEEEEECC
T ss_conf 999999999999999-75945789999999789848986136
No 54
>KOG3895 consensus
Probab=98.60 E-value=5e-08 Score=72.98 Aligned_cols=188 Identities=20% Similarity=0.239 Sum_probs=123.6
Q ss_pred CCEEEEECCC---CCCHHHHHHHHHHHHHCCCCEEECCHHHHHHCCCHHHHH-HHH--------H---HCCCCEEECCHH
Q ss_conf 6366883288---622479999999986235850411748875256503433-454--------3---044310003724
Q gi|254780696|r 83 MDVILIRQDP---PFNMHYITSTYLLEKINPETLIVNNPFWIRNSPEKIFVT-EFS--------E---LMPPTLISRDIT 147 (316)
Q Consensus 83 fD~i~iR~dP---p~d~~yi~~~~~Le~~~~~~~viN~p~~i~~~~eKl~~~-~~~--------~---~~P~T~vt~~~~ 147 (316)
=|+||+|+.. ..+.+|-+.+.-|..+ +...+|+-.++-++-+|-|.- ++- + ++|-|+.-+.
T Consensus 156 PdfVlirqhA~~mA~~~d~rslvig~qya--giP~vNSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~yPnH-- 231 (488)
T KOG3895 156 PDFVLIRQHAFSMALNEDYRSLVIGLQYA--GIPSVNSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTFYPNH-- 231 (488)
T ss_pred CCEEEECCCCHHHCCCCCHHHHHHHHHHC--CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCEEECCCC--
T ss_conf 77788705301010131068999988763--78642026789886145689999999987518544554400106874--
Q ss_pred HHHHHHHH-HHHHHHHCCCCCCCCCEEEECCCCCCHHHHHH--HHHHHCCCCCCEEECCCCCCCCCEEEEEECCEEEEEE
Q ss_conf 55688885-21433111688543446874488711588999--9984001334002105344568269999899886321
Q gi|254780696|r 148 QITRFYLE-MKDIIIKPLYGNGGTGVFRITLGDRNFSSLIE--MLFEKYPEPLMIQSYLPQIRDGDKRILLLNGKPVGAV 224 (316)
Q Consensus 148 ~~~~f~~~-~~~vViKPl~g~~G~gV~~i~~~~~~~~~~~e--~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~g~~v~a~ 224 (316)
+.++.. +-|||+|--.++.|-|-.|+++. .++..+-. .++. ...-+|.||+ ++. |+||--||.++-+-|
T Consensus 232 --K~m~s~~tyPvVVkvghahsGmGKiKV~Nh-~dfqDi~svval~~---Tyat~epFiD-aKY-DiriQKIG~nYKaym 303 (488)
T KOG3895 232 --KEMLSQPTYPVVVKVGHAHSGMGKIKVENH-EDFQDIASVVALTK---TYATAEPFID-AKY-DIRIQKIGHNYKAYM 303 (488)
T ss_pred --HHHCCCCCCCEEEEECCCCCCCCEEEECCH-HHHHHHHHHHHHHH---HHHCCCCCCC-CCC-EEEHHHHHHHHHHHH
T ss_conf --422148877679982543356532552341-55676999999886---2320023434-322-001565404688886
Q ss_pred EEECCCCCCCCCCCCCCCE--EEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEE----C-CEEEEEECCCC
Q ss_conf 2204568600000014731--110077899999999999999849879999511----7-87889836883
Q gi|254780696|r 225 NRIPSEVDNRSNIHAGGKA--ELTKLTKIDLDICKRIGESLRERGLFFTGIDVI----G-DYITEINVTSP 288 (316)
Q Consensus 225 ~R~~~~~~~r~Nl~~Gg~~--~~~~lt~~~~~i~~~~~~~L~~~gl~~~GiDii----g-~~i~EvNvtsP 288 (316)
+| +-.|.|++|. |++ |.+..+++-+.-...+.+.. -||++|.||.+ | +||+|||-+|-
T Consensus 304 Rt-sIsgnWKtNt---GSamLEQIamseRyklwvdtcse~f--GgldICav~alhsKdGrd~i~eV~d~sm 368 (488)
T KOG3895 304 RT-SISGNWKTNT---GSAMLEQIAMSERYKLWVDTCSEMF--GGLDICAVKALHSKDGRDYIIEVMDSSM 368 (488)
T ss_pred HH-HHCCCCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEEECCCCHHHEEEECCCCC
T ss_conf 65-3126754572---0899999987788999999899762--8832466542105655023243123543
No 55
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.58 E-value=3.7e-05 Score=54.19 Aligned_cols=65 Identities=18% Similarity=0.390 Sum_probs=29.4
Q ss_pred CCCCEEECCHHHHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECC
Q ss_conf 443100037245568888521-4331116885434468744887115889999984001334002105
Q gi|254780696|r 137 MPPTLISRDITQITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYL 203 (316)
Q Consensus 137 ~P~T~vt~~~~~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi 203 (316)
.|+...+.+.+++.+|.++.| ||++-|.|--||++...+ .+++.+...+..... ...|+++-+||
T Consensus 684 ~p~~~~~~~~~ea~~~a~~iGyPvlvRPSyvLgG~~m~iv-~~~~eL~~y~~~a~~-~~~pvlIdkfl 749 (1068)
T PRK12815 684 HVPGLTATSEEEALAFAKRIGYPVLIRPSYVIGGQGMAVV-YDEPALEAYLEENVQ-QLYPILIDQFI 749 (1068)
T ss_pred CCCCCEECCHHHHHHHHHHCCCCEEECCCCCCCCCEEEEE-CCHHHHHHHHHHHCC-CCCCEEEEECC
T ss_conf 9996354566799999986499778424433577423897-599999999985157-88855623000
No 56
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=98.55 E-value=1.8e-05 Score=56.25 Aligned_cols=284 Identities=14% Similarity=0.167 Sum_probs=156.8
Q ss_pred CCCCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCC--CEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCC
Q ss_conf 96533189970998884847646799999999889--8899995412489998999999999980777412650464435
Q gi|254780696|r 1 MKKIRNIAIQMNHISTVKVKEDSTFAIALEAQVRG--YQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKII 78 (316)
Q Consensus 1 mkk~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RG--heV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~ 78 (316)
|.+-|||+++.+-= ---||.+...+=. .++| +.|..-.+.+.. .+.+..+.+.+. ..-.+. .
T Consensus 1 m~~~MkVLviGsGG--------REHAia~kl~~S~~v~~v~-~aPGN~G~~~~~-~~~~~~i~~~d~-~~i~~f-----a 64 (426)
T PRK13789 1 MQVKLKVLLIGSGG--------RESAIAFALRKSNLLSELK-VFPGNGGFPDDE-LLPADSFSILDK-SSVQSF-----L 64 (426)
T ss_pred CCCCCEEEEECCCH--------HHHHHHHHHHHCCCCCEEE-EECCCCCCCCCC-CCCCCCCCCCCH-HHHHHH-----H
T ss_conf 96798899989888--------9999999996198988799-988976112345-454443386699-999999-----9
Q ss_pred CHHHCCEEEEECCCCCCHHHHHHHHHHHHHC-CCCEEECCHH-HHHHCCCHHHHHHHHH--HCC--CCEEECCHHHHHHH
Q ss_conf 2100636688328862247999999998623-5850411748-8752565034334543--044--31000372455688
Q gi|254780696|r 79 DLSQMDVILIRQDPPFNMHYITSTYLLEKIN-PETLIVNNPF-WIRNSPEKIFVTEFSE--LMP--PTLISRDITQITRF 152 (316)
Q Consensus 79 ~L~~fD~i~iR~dPp~d~~yi~~~~~Le~~~-~~~~viN~p~-~i~~~~eKl~~~~~~~--~~P--~T~vt~~~~~~~~f 152 (316)
.-.+.|.+++=-.-|.- .+ +-+.++ .+..|+-..+ +-+.=..|.|+-+|-+ -|| .--+.+|.+++.+|
T Consensus 65 ~~~~idLvvvGPE~PL~-~G-----i~D~l~~~gi~vfGP~k~aA~LE~SK~faK~fm~~~~IPTa~~~~f~~~~~A~~~ 138 (426)
T PRK13789 65 KSNPFDLIVVGPEDPLV-AG-----FADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTASYKTFTEYSSSLSY 138 (426)
T ss_pred HHCCCCEEEECCCHHHH-HH-----HHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCEEEEECCHHHHHHH
T ss_conf 98499999989668886-31-----7999841699168959899505126989999999729997601573689999999
Q ss_pred HHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHH-----HCCCCCCEEECCCCCCCCCEEEEEE-CCEEEEE--
Q ss_conf 88521-4331116885434468744887115889999984-----0013340021053445682699998-9988632--
Q gi|254780696|r 153 YLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFE-----KYPEPLMIQSYLPQIRDGDKRILLL-NGKPVGA-- 223 (316)
Q Consensus 153 ~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~-----~~~~~ii~Qefi~~~~~gD~Rv~vi-~g~~v~a-- 223 (316)
+++++ |+|+|+-.-.+|+||+ +..+.......++.+.. .....++++||+. +-+.-++++ ||+-+-.
T Consensus 139 l~~~~~P~VIKaDGLAaGKGV~-V~~~~~eA~~al~~i~~~~~fg~ag~~VvIEE~L~---G~E~S~~a~~dG~~~~~lp 214 (426)
T PRK13789 139 LESEMLPIVIKADGLAAGKGVT-VATEKKMAKRALKEIFKDKKFGQSGNQVVIEEFME---GQEASIFAISDGDSYFLLP 214 (426)
T ss_pred HHHCCCCEEEECCCCCCCCCEE-EECCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC---CCCEEEEEEECCCEEEECC
T ss_conf 9857998899678768999669-53999999999999754423303587599997458---9844799997299778688
Q ss_pred ----EEEECCCCCCCCCCCCCCCEEEE-ECCHHHH-----HHHHHHHHHHHHCCCEEEEEEEE-------C-CEEEEEEC
Q ss_conf ----12204568600000014731110-0778999-----99999999999849879999511-------7-87889836
Q gi|254780696|r 224 ----VNRIPSEVDNRSNIHAGGKAELT-KLTKIDL-----DICKRIGESLRERGLFFTGIDVI-------G-DYITEINV 285 (316)
Q Consensus 224 ----~~R~~~~~~~r~Nl~~Gg~~~~~-~lt~~~~-----~i~~~~~~~L~~~gl~~~GiDii-------g-~~i~EvNv 285 (316)
+.|. -+||-=-|.--=|...+. -+++++. ++...+.+.|++.|+.|.||=.. | +||+|.|+
T Consensus 215 ~aQDhKR~-~dgD~GPNTGGMGaysP~p~~~~~~~~~i~~~ii~pt~~~l~~~g~~y~GvLy~GlMlt~~G~pkVlEfN~ 293 (426)
T PRK13789 215 AAQDHKRA-FDGDQGPNTGGMGAYCPAPVITEAILQKVKERIFDPMFDDFRKKGHPYRGLLYAGLMISPEGEPKVVEFNC 293 (426)
T ss_pred CCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCEEEEEEEE
T ss_conf 64444213-37999999998767777866899999999986048999999858999886765328992699769999885
Q ss_pred C--CCHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 8--83037889975199989999999988
Q gi|254780696|r 286 T--SPTCIREIHRNGGENVASLFWDGIEK 312 (316)
Q Consensus 286 t--sP~g~~~~~~~~~~~i~~~i~d~ie~ 312 (316)
- -|- .+-+--...-|+...+...++.
T Consensus 294 RfGDPE-~q~iLp~L~~dl~~~~~a~~~g 321 (426)
T PRK13789 294 RFGDPE-TQCVLAMLDGDLLELLYAASTG 321 (426)
T ss_pred ECCCCH-HHHHHHHHHCCHHHHHHHHHHC
T ss_conf 318916-8889887415499999999708
No 57
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.54 E-value=2.2e-05 Score=55.69 Aligned_cols=281 Identities=17% Similarity=0.232 Sum_probs=166.1
Q ss_pred CCEEEEEECCHHHCCCC---CCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCH
Q ss_conf 33189970998884847---646799999999889889999541248999899999999998077741265046443521
Q gi|254780696|r 4 IRNIAIQMNHISTVKVK---EDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDL 80 (316)
Q Consensus 4 ~~kI~fimDpi~~i~~~---~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L 80 (316)
++||+++.--+-.+--. -.|...-+++.++-|+++-..+++=-++.-..-.|....++ +-...+. .+.+.-
T Consensus 7 ikkvLiiGsGpi~IGqa~EfDysg~qA~~aLkeeG~~vvlvN~NPaTi~TD~~~ad~vY~e--Plt~e~v----~~Ii~~ 80 (1068)
T PRK12815 7 IKKILVIGSGPIIIGQAAEFDYSGTQACKALKEEGYQVVLVNPNPATIMTDPEPADTVYFE--PLTLEFV----KRIIRR 80 (1068)
T ss_pred CCEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHCCCCCCCEEEEC--CCCHHHH----HHHHHH
T ss_conf 8889998988153123446565699999999986998999889832620898744437885--8989999----999997
Q ss_pred HHCCEEEEECCCCCCHHHHHHHHHHHHH---CC-CCEE-ECCHHHHHHCCCH-HHHH---HHHHHCCCCEEECCHHHHHH
Q ss_conf 0063668832886224799999999862---35-8504-1174887525650-3433---45430443100037245568
Q gi|254780696|r 81 SQMDVILIRQDPPFNMHYITSTYLLEKI---NP-ETLI-VNNPFWIRNSPEK-IFVT---EFSELMPPTLISRDITQITR 151 (316)
Q Consensus 81 ~~fD~i~iR~dPp~d~~yi~~~~~Le~~---~~-~~~v-iN~p~~i~~~~eK-l~~~---~~~~~~P~T~vt~~~~~~~~ 151 (316)
.+=|+|+.--. -+..++...-|... ++ ++.+ --++.+|..+.|. ++.. +...++|++.+.++.+++.+
T Consensus 81 E~Pd~il~~~G---GqtaLnla~~L~~~GiL~k~~v~llGt~~~~I~~aedR~~f~~~m~~ig~~~~~s~~~~s~~ea~~ 157 (1068)
T PRK12815 81 EKPDALLATLG---GQTALNLAVKLLEAGILEQYGVELLGTNVEAIQKGEDRERFRALMKELGEPVPESEIVDSEEEALR 157 (1068)
T ss_pred HCCCEEEECCC---CHHHHHHHHHHHHCCCHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCHHCCCHHHHHH
T ss_conf 49998986777---847999999999759778659649679999998645999999999976999997052199999999
Q ss_pred HHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHC-CCCCCEEECCCCCCCCCEEEEEE---CC-E-EEEEE
Q ss_conf 888521-433111688543446874488711588999998400-13340021053445682699998---99-8-86321
Q gi|254780696|r 152 FYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKY-PEPLMIQSYLPQIRDGDKRILLL---NG-K-PVGAV 224 (316)
Q Consensus 152 f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~-~~~ii~Qefi~~~~~gD~Rv~vi---~g-~-~v~a~ 224 (316)
+.++.| |+|+.|.+-.||.|-..+ .++..+..+++.-.... ..+++++++|...++ +-+-|+ +| . .+|+|
T Consensus 158 ~a~~ig~PvivRps~~lGg~g~~i~-~n~~eL~~~~~~~~~~S~~~~vlie~sl~gwkE--ie~ev~RD~~~n~i~vc~m 234 (1068)
T PRK12815 158 FAEKIGFPIIVRPAYTLGGDGGGIA-ENEEELEQLARQGLQASPIHQCLLEESIAGWKE--IEYEVMRDRNDNCVTVCNM 234 (1068)
T ss_pred HHHHCCCCEEEEECCCCCCCCCEEE-CCHHHHHHHHHHHHHHCCCCCEEEEHHCCCCEE--EEEEEEEECCCCEEEEEEC
T ss_conf 9986699899983610668965044-599999999999996399985786501179769--9999999889897998541
Q ss_pred EEECCCCCCCCCCCCCCCEE---EEECCHHHHH----HHHHHHHHHHHCCCEEEEEEE---E---C--CEEEEEECCCCH
Q ss_conf 22045686000000147311---1007789999----999999999984987999951---1---7--878898368830
Q gi|254780696|r 225 NRIPSEVDNRSNIHAGGKAE---LTKLTKIDLD----ICKRIGESLRERGLFFTGIDV---I---G--DYITEINVTSPT 289 (316)
Q Consensus 225 ~R~~~~~~~r~Nl~~Gg~~~---~~~lt~~~~~----i~~~~~~~L~~~gl~~~GiDi---i---g--~~i~EvNvtsP~ 289 (316)
.-+-+ .-+|.|-+.. ..+||+++.+ .+.+++..| |+ -.|.-+ + + .||+||| |-
T Consensus 235 EnidP-----~GIHTGDSi~vaP~qTL~d~e~q~lR~~a~~I~~~l---gv-~G~~NiQFAv~p~~~~~~VIEvN---PR 302 (1068)
T PRK12815 235 ENIDP-----VGVHTGDSIVVAPSQTLTDDEYQMLRSASLKIIRAL---GV-VGGCNIQFALDPRSKQYYVIEVN---PR 302 (1068)
T ss_pred CCCCC-----CCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHC---CE-ECCEEEEEEECCCCCCEEEEECC---CC
T ss_conf 23544-----543567745345781269999999999999999972---80-10105799886999828999647---86
Q ss_pred HHH---HHHHHCCCCHHHHHHH
Q ss_conf 378---8997519998999999
Q gi|254780696|r 290 CIR---EIHRNGGENVASLFWD 308 (316)
Q Consensus 290 g~~---~~~~~~~~~i~~~i~d 308 (316)
--| =..+++|-+||..-..
T Consensus 303 ~SRssalaSKATGyPiAkvaak 324 (1068)
T PRK12815 303 VSRSSALASKATGYPIAKIAAK 324 (1068)
T ss_pred CCCHHHHHHHHCCCCHHHHHHH
T ss_conf 2202478887508848999999
No 58
>TIGR00877 purD phosphoribosylamine--glycine ligase; InterPro: IPR000115 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) catalyzes the second step in the de novo biosynthesis of purine: ATP + 5-phosphoribosylamine + glycine = ADP + P_i + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART.; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process.
Probab=98.54 E-value=7.2e-06 Score=58.87 Aligned_cols=220 Identities=20% Similarity=0.285 Sum_probs=137.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEECC-HHHHHHCCCHHHHHHHHH-H-CCCC---EEECCHHHHHHHHHHH
Q ss_conf 63668832886224799999999862358504117-488752565034334543-0-4431---0003724556888852
Q gi|254780696|r 83 MDVILIRQDPPFNMHYITSTYLLEKINPETLIVNN-PFWIRNSPEKIFVTEFSE-L-MPPT---LISRDITQITRFYLEM 156 (316)
Q Consensus 83 fD~i~iR~dPp~d~~yi~~~~~Le~~~~~~~viN~-p~~i~~~~eKl~~~~~~~-~-~P~T---~vt~~~~~~~~f~~~~ 156 (316)
.|.++|==--|. ..+|.- .||.+ |..++=. -.|=+.=.+|=|+=+|-+ + ||=| -+..|++++++|++++
T Consensus 69 idL~~iGPE~PL-~~G~vd--~le~~--Gi~~FGP~k~AA~LE~SK~FaK~fm~~~gIPGta~Y~~Ft~~eea~~y~~~~ 143 (459)
T TIGR00877 69 IDLAVIGPEAPL-VLGLVD--ALEEA--GIPVFGPTKEAAQLEASKAFAKDFMKRYGIPGTAEYEVFTDPEEAKSYIQEK 143 (459)
T ss_pred CCEEEECCCCCH-HHHHHH--HHHHC--CCCEECCCHHHHHHHCCHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHC
T ss_conf 754880874101-201477--89867--9514568878864332878999999964898322210008989999999841
Q ss_pred H-H--HHHHCCCCCCCCCEEEE----CCCCCCHHHHHHHHHHH----CCCCCCEEECCCCCCCCCEEEEEE-CCEEEEE-
Q ss_conf 1-4--33111688543446874----48871158899999840----013340021053445682699998-9988632-
Q gi|254780696|r 157 K-D--IIIKPLYGNGGTGVFRI----TLGDRNFSSLIEMLFEK----YPEPLMIQSYLPQIRDGDKRILLL-NGKPVGA- 223 (316)
Q Consensus 157 ~-~--vViKPl~g~~G~gV~~i----~~~~~~~~~~~e~~~~~----~~~~ii~Qefi~~~~~gD~Rv~vi-~g~~v~a- 223 (316)
+ | +|+||---.+|+||... ...++....+-+.+.++ ...+|++.|||+ +-+.-++++ ||+-+--
T Consensus 144 g~PA~~VVKadGLAAGKGV~V~Ge~L~~~eEA~~~~~~~~~~~~FG~a~~~VVIEEfL~---G~E~S~~~~~DG~~v~Pl 220 (459)
T TIGR00877 144 GAPAEIVVKADGLAAGKGVIVAGEQLKTNEEAIKAVEEILEQKAFGEAGERVVIEEFLE---GEEVSLLAFVDGKTVIPL 220 (459)
T ss_pred CCCCCEEEECCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC---CCCEEEEEEECCCEEEEC
T ss_conf 88974898056665798626847602747899999999985476566688258964248---800899999748667705
Q ss_pred -----EEEECCCCCCCCCCCCCC--CEEEEE-----CCHHHH----HHHHHHHHHHHHCCCEEEEEEE-----E--C---
Q ss_conf -----122045686000000147--311100-----778999----9999999999984987999951-----1--7---
Q gi|254780696|r 224 -----VNRIPSEVDNRSNIHAGG--KAELTK-----LTKIDL----DICKRIGESLRERGLFFTGIDV-----I--G--- 277 (316)
Q Consensus 224 -----~~R~~~~~~~r~Nl~~Gg--~~~~~~-----lt~~~~----~i~~~~~~~L~~~gl~~~GiDi-----i--g--- 277 (316)
..|. -+||- .+.=.|| .+.+.+ .++-++ +|...+++.|++.|..|.||=. . |
T Consensus 221 p~aQDhKR~-~egD~-~GpNTGGMGAYsP~phlL~~~~e~~~~~~~~I~~pt~~~l~~eG~~y~GvLYaglMl~~~G~~L 298 (459)
T TIGR00877 221 PPAQDHKRA-LEGDK-KGPNTGGMGAYSPAPHLLVFTEEVEKRIAEEIVEPTVKALRKEGTPYKGVLYAGLMLTKEGGVL 298 (459)
T ss_pred CCCCCCCCC-CCCCC-CCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCEE
T ss_conf 421576504-66888-7885578633027878442371789999877789999999852897247874138997689886
Q ss_pred -CEEEEEECC--CCHHHHHHHHHCC--CCHHHHHHHHHHHH
Q ss_conf -878898368--8303788997519--99899999999886
Q gi|254780696|r 278 -DYITEINVT--SPTCIREIHRNGG--ENVASLFWDGIEKI 313 (316)
Q Consensus 278 -~~i~EvNvt--sP~g~~~~~~~~~--~~i~~~i~d~ie~~ 313 (316)
++|+|.|+= =| .-+.+--+.. -|+.+.+...+|..
T Consensus 299 ~PkVlEfN~RFGDP-Etq~vL~lL~dqsdL~e~~~a~~eg~ 338 (459)
T TIGR00877 299 VPKVLEFNVRFGDP-ETQAVLPLLKDQSDLLEVCLAAVEGK 338 (459)
T ss_pred EEEEEEECCCCCCH-HHHHHHHHHCCCCCHHHHHHHHHCCC
T ss_conf 44788970527885-34446454238888899999984566
No 59
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.52 E-value=2e-05 Score=55.97 Aligned_cols=263 Identities=16% Similarity=0.259 Sum_probs=153.2
Q ss_pred CCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCC----CCCHHHCCEEEEECCCCCCHH
Q ss_conf 4679999999988988999954124899989999999999807774126504644----352100636688328862247
Q gi|254780696|r 22 DSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEK----IIDLSQMDVILIRQDPPFNMH 97 (316)
Q Consensus 22 DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~----~~~L~~fD~i~iR~dPp~d~~ 97 (316)
.+++.-+++.++.|++.-.++-+-=+++-. ++-....+|+-...+ .+...+-+.|++- +.
T Consensus 574 Y~~v~a~~alk~~G~~~imIN~NPETVSTD----------~d~sDrLYFEplt~E~V~~I~~~E~p~gvi~q------fG 637 (1063)
T PRK05294 574 YCCVHAALALREAGYETIMVNCNPETVSTD----------YDTSDRLYFEPLTLEDVLEIIEKEKPKGVIVQ------FG 637 (1063)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCCCC----------CCCCCEEEECCCCHHHHHHHHHHHCCCEEEEE------CC
T ss_conf 679999999996598158953781111156----------56676145436889999999997589879997------38
Q ss_pred HHHHHHHHHHHC-CCCEEE-CCHHHHHHCCCHHHHHHHH----HHCCCCEEECCHHHHHHHHHHHH-HHHHHCCCCCCCC
Q ss_conf 999999998623-585041-1748875256503433454----30443100037245568888521-4331116885434
Q gi|254780696|r 98 YITSTYLLEKIN-PETLIV-NNPFWIRNSPEKIFVTEFS----ELMPPTLISRDITQITRFYLEMK-DIIIKPLYGNGGT 170 (316)
Q Consensus 98 yi~~~~~Le~~~-~~~~vi-N~p~~i~~~~eKl~~~~~~----~~~P~T~vt~~~~~~~~f~~~~~-~vViKPl~g~~G~ 170 (316)
+-++..+-..++ .|+.++ -+|.+|..+.|.-.-..+. -..|+-..+.+.+++.+|.++.| ||++-|.|=-||+
T Consensus 638 GQt~~nla~~L~~~g~~ilGts~~~Id~aEDR~~F~~~l~~l~i~qp~~~~a~s~~ea~~~a~~iGyPvlvRPSyVLGG~ 717 (1063)
T PRK05294 638 GQTPLKLAKALEAAGVPILGTSPDAIDLAEDRERFQKLLEKLGIKQPPNGTATSVEEALEIAEEIGYPVLVRPSYVLGGR 717 (1063)
T ss_pred CCCHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHHHHHCCCCEEECCCCCCCCC
T ss_conf 83678999999987994777887887878758889999986599999970766899999999864986684343102577
Q ss_pred CEEEECCCCCCHHHHHHHHHHHC-CCCCCEEECCCCCCCCCEEEEEECCE-E-EE-EEEEECCCCCCCCCCCCCCCEE--
Q ss_conf 46874488711588999998400-13340021053445682699998998-8-63-2122045686000000147311--
Q gi|254780696|r 171 GVFRITLGDRNFSSLIEMLFEKY-PEPLMIQSYLPQIRDGDKRILLLNGK-P-VG-AVNRIPSEVDNRSNIHAGGKAE-- 244 (316)
Q Consensus 171 gV~~i~~~~~~~~~~~e~~~~~~-~~~ii~Qefi~~~~~gD~Rv~vi~g~-~-v~-a~~R~~~~~~~r~Nl~~Gg~~~-- 244 (316)
+.-.+ .+++.+...++....-. ..|+++-+||....+-|+-++- ||+ + ++ .|.-+- ++-+|.|-+..
T Consensus 718 ~M~iv-~~~~eL~~yl~~a~~vs~~~pvlIdkfl~ga~E~eVDai~-Dg~~v~I~gImEHIE-----~AGVHSGDS~~V~ 790 (1063)
T PRK05294 718 AMEIV-YDEEELERYMREAVKVSPDHPVLIDRFLEDAIEVDVDAIC-DGEDVLIGGIMEHIE-----EAGVHSGDSACSL 790 (1063)
T ss_pred CEEEE-CCHHHHHHHHHHHHHHCCCCCEEEEHHHHHCHHHHHHEEE-CCCEEEEEEEEEECC-----CCCCCCCCCEEEE
T ss_conf 14785-6999999999999863899977863543202454430231-488489999872001-----4575667842881
Q ss_pred -EEECCHHHH----HHHHHHHHHHHHCCCEEEEEEEE--CC--EEEEEECCCCHHHHHHHHHCCCCHHHHHHHH
Q ss_conf -100778999----99999999999849879999511--78--7889836883037889975199989999999
Q gi|254780696|r 245 -LTKLTKIDL----DICKRIGESLRERGLFFTGIDVI--GD--YITEINVTSPTCIREIHRNGGENVASLFWDG 309 (316)
Q Consensus 245 -~~~lt~~~~----~i~~~~~~~L~~~gl~~~GiDii--g~--~i~EvNvtsP~g~~~~~~~~~~~i~~~i~d~ 309 (316)
+..|++++. +.+.++++.|.-.|+. -|-++ ++ ||+|+|--+---+.=+.+++|+++++.=...
T Consensus 791 Pp~~Ls~~~~~~i~~~t~~ia~~l~v~G~~--NiQf~vk~~~vyVIE~NpRaSRtvPfvSKatg~pl~~iAtk~ 862 (1063)
T PRK05294 791 PPYTLSEEIIDEIREQTKKLALELNVVGLM--NVQFAVKDDEVYVIEVNPRASRTVPFVSKATGVPLAKIAARV 862 (1063)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCCC--EEEEEECCCEEEEEEECCCCCCCCHHHHHHCCCCHHHHHHHH
T ss_conf 685589999999999999999855666642--033554098389999447444530445764199799999999
No 60
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=98.45 E-value=7.6e-05 Score=52.16 Aligned_cols=280 Identities=17% Similarity=0.178 Sum_probs=151.1
Q ss_pred CCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHH-HEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHH
Q ss_conf 533189970998884847646799999999889889999541-2489998999999999980777412650464435210
Q gi|254780696|r 3 KIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPD-QLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLS 81 (316)
Q Consensus 3 k~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~-dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~ 81 (316)
|.|||+++.+-= ---||++...+-+..+|++--. .-.+. ..+... +..+..++=.+. +...-.
T Consensus 1 m~MkVLViGsGG--------REHAla~kl~~s~~~~~~~~g~gn~g~~-----~~~~~~-~~~~~~d~~~i~--~~a~~~ 64 (435)
T PRK06395 1 MTMKVMLVGSGG--------REDAIARAIKRSGAILFSVIGHENPSIK-----KLSKKY-LFYDEKDYDLIE--DFALKN 64 (435)
T ss_pred CCCEEEEECCCH--------HHHHHHHHHHCCCCCEEEEECCCCHHHH-----HHCCCC-CCCCCCCHHHHH--HHHHHC
T ss_conf 987799988788--------9999999985598844999899967877-----623234-656856999999--999984
Q ss_pred HCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEECCHHH-HHHCCCHHHHHHHHH--HCCCC---EEECCHHHHHHHHHH
Q ss_conf 063668832886224799999999862358504117488-752565034334543--04431---000372455688885
Q gi|254780696|r 82 QMDVILIRQDPPFNMHYITSTYLLEKINPETLIVNNPFW-IRNSPEKIFVTEFSE--LMPPT---LISRDITQITRFYLE 155 (316)
Q Consensus 82 ~fD~i~iR~dPp~d~~yi~~~~~Le~~~~~~~viN~p~~-i~~~~eKl~~~~~~~--~~P~T---~vt~~~~~~~~f~~~ 155 (316)
..|.+++=-.-|.- .+|.- .|+. .+..|+-..+. -+.=.+|.|+=+|-+ -||-| ..+.+..++..++.+
T Consensus 65 ~idLvvvGPE~pL~-~Gi~D--~l~~--~gi~vFGP~k~aA~LE~SK~FaK~fm~~~~IP~ta~~~~~~~~~ea~~~~~~ 139 (435)
T PRK06395 65 NVDIVFVGPDPVLA-TPLVN--NLLK--RGIKVASPTMEAAMIETSKMFMRYLMERHNIPGNINFNACFSEKDAARDYIT 139 (435)
T ss_pred CCCEEEECCCHHHH-CCHHH--HHHH--CCCCEECCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 99999989767886-61455--9976--8994668428873263279889999998099856645323999999999997
Q ss_pred HH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHH---HHHHCCCCCCEEECCCCCCCCCEEEEEE-CCEEEEEE------
Q ss_conf 21-4331116885434468744887115889999---9840013340021053445682699998-99886321------
Q gi|254780696|r 156 MK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEM---LFEKYPEPLMIQSYLPQIRDGDKRILLL-NGKPVGAV------ 224 (316)
Q Consensus 156 ~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~---~~~~~~~~ii~Qefi~~~~~gD~Rv~vi-~g~~v~a~------ 224 (316)
++ |+|+|+-.-.+|+||+.............+. +...+ ..++++||+. +-+.-++.+ ||+-+-.+
T Consensus 140 ~~~piVIKadGLAaGKGV~V~~~~~~~~~ea~~~~~~~~~~~-~~vvIEE~L~---G~E~S~~a~~dG~~~~~lp~aqDh 215 (435)
T PRK06395 140 SMKDVAVKPIGLTGGKGVKVTGEQLNSVDEAIRYAIEILDRD-GVVLIEKKMT---GEEFSLQAFSDGKHLSFMPIVQDY 215 (435)
T ss_pred CCCCEEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCC-CEEEEEEEEE---CCEEEEEEEECCCEEEECCCCCCC
T ss_conf 099848973422578964895585778999999999887348-8599999984---416899999769955858730125
Q ss_pred EEECCCCCCCCCCCCCCCE--EEE-----ECCHHH----HHHHHHHHHHHHHCCCEEEEEEEE-------CCEEEEEECC
Q ss_conf 2204568600000014731--110-----077899----999999999999849879999511-------7878898368
Q gi|254780696|r 225 NRIPSEVDNRSNIHAGGKA--ELT-----KLTKID----LDICKRIGESLRERGLFFTGIDVI-------GDYITEINVT 286 (316)
Q Consensus 225 ~R~~~~~~~r~Nl~~Gg~~--~~~-----~lt~~~----~~i~~~~~~~L~~~gl~~~GiDii-------g~~i~EvNvt 286 (316)
.|. -+||-=-| .||-. .+. .++++. ++|...+.+.|++.|+.|.|+=.+ |+||+|.|+-
T Consensus 216 KR~-~dgD~GPN--TGGMGaysp~~~~~p~l~~~~~e~~~~Ii~pti~~l~~eg~~y~GvLy~GlMit~~gpkVlEyN~R 292 (435)
T PRK06395 216 KRA-YEGDHGPN--TGGMGSISDRDFSLPFLSKDAPERAKHILNDIIRAMKDENNPFKGIMYGQFMDTPNGVKVIEINAR 292 (435)
T ss_pred CCC-CCCCCCCC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCEEEEEEEC
T ss_conf 334-47999999--998745688888874327789999999999999999964997089987789850899648998620
Q ss_pred --CCHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf --8303788997519998999999998
Q gi|254780696|r 287 --SPTCIREIHRNGGENVASLFWDGIE 311 (316)
Q Consensus 287 --sP~g~~~~~~~~~~~i~~~i~d~ie 311 (316)
-|- .+-+--...-|+...+...++
T Consensus 293 fGDPE-~QviLp~L~~Dl~~ll~a~~~ 318 (435)
T PRK06395 293 FADPE-GINVLYLLKSDFVETLHQIYS 318 (435)
T ss_pred CCCCH-HHHHHHHHCCCHHHHHHHHHC
T ss_conf 38806-888877600529999999970
No 61
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=98.41 E-value=0.00013 Score=50.58 Aligned_cols=220 Identities=17% Similarity=0.223 Sum_probs=133.0
Q ss_pred HCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEECCHHH-HHHCCCHHHHHHHHH--HCCCCE---EECCHHHHHHHHHH
Q ss_conf 063668832886224799999999862358504117488-752565034334543--044310---00372455688885
Q gi|254780696|r 82 QMDVILIRQDPPFNMHYITSTYLLEKINPETLIVNNPFW-IRNSPEKIFVTEFSE--LMPPTL---ISRDITQITRFYLE 155 (316)
Q Consensus 82 ~fD~i~iR~dPp~d~~yi~~~~~Le~~~~~~~viN~p~~-i~~~~eKl~~~~~~~--~~P~T~---vt~~~~~~~~f~~~ 155 (316)
+.|.+++=-+.|.- .++.- .|+. .|..++-.++. -+.=.+|-|+=.|-. -|| |. +..+++++++|+++
T Consensus 63 ~idl~vVGPE~pL~-~GvvD--~l~~--~Gi~vFGPsk~AA~lE~SK~faK~fm~k~~IP-ta~y~~f~~~e~a~ayi~~ 136 (428)
T COG0151 63 NVDLVVVGPEAPLV-AGVVD--ALRA--AGIPVFGPTKAAAQLEGSKAFAKDFMKKYGIP-TAEYEVFTDPEEAKAYIDE 136 (428)
T ss_pred CCCEEEECCCHHHH-HHHHH--HHHH--CCCCEECCCHHHHHHHHHHHHHHHHHHHCCCC-CCCCEECCCHHHHHHHHHH
T ss_conf 99989989717876-44689--9987--79962386788988775399999999981999-6411100898999999997
Q ss_pred HH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHH----CCCCCCEEECCCCCCCCCEEEEEE-CCEEEEEE-----
Q ss_conf 21-43311168854344687448871158899999840----013340021053445682699998-99886321-----
Q gi|254780696|r 156 MK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEK----YPEPLMIQSYLPQIRDGDKRILLL-NGKPVGAV----- 224 (316)
Q Consensus 156 ~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~----~~~~ii~Qefi~~~~~gD~Rv~vi-~g~~v~a~----- 224 (316)
++ |+|+||-.-.+|+||......+.....+-+.+..+ +...+++.||+.. -+.-++.+ ||+-+-.|
T Consensus 137 ~g~piVVKadGLaaGKGV~V~~~~eeA~~a~~~~l~~~~fg~~g~~VVIEEfL~G---eE~S~~a~~DG~~v~p~p~aQD 213 (428)
T COG0151 137 KGAPIVVKADGLAAGKGVIVAMTLEEAEAAVDEMLEGNAFGSAGARVVIEEFLDG---EEFSLQAFVDGKTVIPMPTAQD 213 (428)
T ss_pred CCCCEEEECCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCC---EEEEEEEEECCCEEEECCCCCC
T ss_conf 2998899345446789859827799999999999740001478874899853346---1799999976986787853145
Q ss_pred -EEECCCCCCCCCCCCCCCEEEEE-CCHHH-----HHHHHHHHHHHHHCCCEEEEEEEE-------CCEEEEEECC--CC
Q ss_conf -22045686000000147311100-77899-----999999999999849879999511-------7878898368--83
Q gi|254780696|r 225 -NRIPSEVDNRSNIHAGGKAELTK-LTKID-----LDICKRIGESLRERGLFFTGIDVI-------GDYITEINVT--SP 288 (316)
Q Consensus 225 -~R~~~~~~~r~Nl~~Gg~~~~~~-lt~~~-----~~i~~~~~~~L~~~gl~~~GiDii-------g~~i~EvNvt--sP 288 (316)
.|. -+||-=-|.--=|...+.+ +|++. ++|...+...|.+.|..|.||=.. |+||+|.|+- -|
T Consensus 214 hKra-~dgD~GPNTGGMGaysp~P~~t~e~~~~~~~~Iv~ptv~gm~~EG~~f~GvLy~glMlt~~GPkViEfN~RFGDP 292 (428)
T COG0151 214 HKRA-YDGDTGPNTGGMGAYSPAPFITDEVVERAVEEIVEPTVEGMAKEGYPFRGVLYAGLMLTADGPKVIEFNARFGDP 292 (428)
T ss_pred CCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCEEEEEECCCCCH
T ss_conf 6433-489989988887777798879989999999999999999999718981478876789828996799985666883
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 037889975199989999999988
Q gi|254780696|r 289 TCIREIHRNGGENVASLFWDGIEK 312 (316)
Q Consensus 289 ~g~~~~~~~~~~~i~~~i~d~ie~ 312 (316)
-+ +-+--+..-|+...+....+.
T Consensus 293 Et-q~vL~~l~sdl~~~~~a~~~g 315 (428)
T COG0151 293 ET-QVVLPLLESDLVELLLAAVDG 315 (428)
T ss_pred HH-HHHHHHCCCCHHHHHHHHHHC
T ss_conf 57-777876026099999999718
No 62
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=98.37 E-value=2.1e-05 Score=55.85 Aligned_cols=179 Identities=18% Similarity=0.313 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHCCCCEEECCHHHHHHCCCHHHHHHHH--HH---CCCCEEECCHHHHHHHHHHHH-HHHHHCCCCCCCC
Q ss_conf 79999999986235850411748875256503433454--30---443100037245568888521-4331116885434
Q gi|254780696|r 97 HYITSTYLLEKINPETLIVNNPFWIRNSPEKIFVTEFS--EL---MPPTLISRDITQITRFYLEMK-DIIIKPLYGNGGT 170 (316)
Q Consensus 97 ~yi~~~~~Le~~~~~~~viN~p~~i~~~~eKl~~~~~~--~~---~P~T~vt~~~~~~~~f~~~~~-~vViKPl~g~~G~ 170 (316)
+-|+.--+++.-+.|..|+-+..+.+.+-|.-..-++. ++ +-+-.+..+.+++.+..++.| |+|+||+-+|.|+
T Consensus 84 EAI~td~L~elE~~G~~VVP~ArAt~ltMnRegiRrlAAeeLglpTs~Y~fa~s~~e~~~a~~~iGfPcvvKPvMSSSGk 163 (394)
T COG0027 84 EAIATDALVELEEEGYTVVPNARATKLTMNREGIRRLAAEELGLPTSKYRFADSLEELRAAVEKIGFPCVVKPVMSSSGK 163 (394)
T ss_pred HHHHHHHHHHHHHCCCEECCCHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEECCCCCCCCCC
T ss_conf 66647889999867966755327777342689899988997299976632135599999999974997021332026889
Q ss_pred CEEEECCCCCCHHHHHHHHHHHC---CCCCCEEECCCCCCCCCEEEEEE---CCEE-EE-EE-EEECCCCCCCCCCCCCC
Q ss_conf 46874488711588999998400---13340021053445682699998---9988-63-21-22045686000000147
Q gi|254780696|r 171 GVFRITLGDRNFSSLIEMLFEKY---PEPLMIQSYLPQIRDGDKRILLL---NGKP-VG-AV-NRIPSEVDNRSNIHAGG 241 (316)
Q Consensus 171 gV~~i~~~~~~~~~~~e~~~~~~---~~~ii~Qefi~~~~~gD~Rv~vi---~g~~-v~-a~-~R~~~~~~~r~Nl~~Gg 241 (316)
|=..+. +..++.+.|+....++ ..-+++.+|++ .+-++-.+.+ +|.- ++ -+ .|. ..||++-
T Consensus 164 Gqsvv~-~~e~ve~AW~~A~~g~R~~~~RVIVE~fv~--fd~EITlLtvr~~~~~~~Fc~PIGHrq-~dgdY~E------ 233 (394)
T COG0027 164 GQSVVR-SPEDVEKAWEYAQQGGRGGSGRVIVEEFVK--FDFEITLLTVRAVDGTGSFCAPIGHRQ-EDGDYRE------ 233 (394)
T ss_pred CCEEEC-CHHHHHHHHHHHHHCCCCCCCCEEEEEEEC--CEEEEEEEEEEEECCCCCCCCCCCCCC-CCCCHHC------
T ss_conf 821435-987889999999754788887189998732--327999999997558877677766405-7887010------
Q ss_pred CEEEEECCHHHH----HHHHHHHHHHHHCCCEEEEEEEE--CCE--EEEEECCCC
Q ss_conf 311100778999----99999999999849879999511--787--889836883
Q gi|254780696|r 242 KAELTKLTKIDL----DICKRIGESLRERGLFFTGIDVI--GDY--ITEINVTSP 288 (316)
Q Consensus 242 ~~~~~~lt~~~~----~i~~~~~~~L~~~gl~~~GiDii--g~~--i~EvNvtsP 288 (316)
+-.+.++|+... .||.++...|-+.|++ ||.+. ||. ..||. ..|
T Consensus 234 SWQP~~mS~~al~~A~~IA~~vt~aLGG~GlF--GVElfv~gDeV~FsEVS-PRP 285 (394)
T COG0027 234 SWQPQEMSEAALEEAQSIAKRVTDALGGRGLF--GVELFVKGDEVIFSEVS-PRP 285 (394)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCE--EEEEEEECCEEEEEECC-CCC
T ss_conf 36841038999999999999999860586303--68999728878985257-898
No 63
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=98.32 E-value=0.00029 Score=48.36 Aligned_cols=218 Identities=16% Similarity=0.171 Sum_probs=126.5
Q ss_pred HCCEEEEECCCCCCHHHHHHHHHHHHHC-CCCEEECCHHH-HHHCCCHHHHHHHHH--HCCCC---EEECCHHHHHHHHH
Q ss_conf 0636688328862247999999998623-58504117488-752565034334543--04431---00037245568888
Q gi|254780696|r 82 QMDVILIRQDPPFNMHYITSTYLLEKIN-PETLIVNNPFW-IRNSPEKIFVTEFSE--LMPPT---LISRDITQITRFYL 154 (316)
Q Consensus 82 ~fD~i~iR~dPp~d~~yi~~~~~Le~~~-~~~~viN~p~~-i~~~~eKl~~~~~~~--~~P~T---~vt~~~~~~~~f~~ 154 (316)
..|.+++=-.-|.- .+ +-+.++ .+..|+-..+. -+.=..|.|+=+|-+ -||-| -+.+|.+++.+|++
T Consensus 69 ~IDLvvVGPE~PL~-~G-----i~D~l~~~gi~vFGP~k~aA~LE~SK~FaK~fm~~~~IPtta~~~~f~~~~~A~~~l~ 142 (485)
T PRK05784 69 SPDLVVIGPEEPLF-AG-----VADALREEGFPVFGASSKCAEIEKSKVFARSLMWKYGIPGRLRYGVFKDVEEAYSFAE 142 (485)
T ss_pred CCCEEEECCHHHHH-HH-----HHHHHHHCCCCEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 99999989738876-12-----5899973799078968899414127889999999728996640121389999999986
Q ss_pred HHHHHHHHCCCCCCCCCEEEECCCCCC----HHHHH-----HHHH-----HHCCCCCCEEECCCCCCCCCEEEEEE-CCE
Q ss_conf 521433111688543446874488711----58899-----9998-----40013340021053445682699998-998
Q gi|254780696|r 155 EMKDIIIKPLYGNGGTGVFRITLGDRN----FSSLI-----EMLF-----EKYPEPLMIQSYLPQIRDGDKRILLL-NGK 219 (316)
Q Consensus 155 ~~~~vViKPl~g~~G~gV~~i~~~~~~----~~~~~-----e~~~-----~~~~~~ii~Qefi~~~~~gD~Rv~vi-~g~ 219 (316)
..+|+|+|+-.-.+|+||+.+...... ....+ +.+. ......++++||+. +-+.-++.+ ||+
T Consensus 143 ~~~piVIKaDGLAaGKGV~V~~~~~~~~~~~~~e~~~~~~~~~~~~~~~fg~ag~~VvIEEfL~---G~E~S~~a~~DG~ 219 (485)
T PRK05784 143 YGGSVAIKPARQAGGKGVKVIYDLQAYLSNEKDEVLTKGAEEIKEQLASYRDVEEKILVEEKVD---GVEYTVQVLTDGE 219 (485)
T ss_pred HCCCEEEECCHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC---CCEEEEEEEEECC
T ss_conf 4898499211330678518822727777778999999999999987654324687099996446---8179999998299
Q ss_pred EEEEE------EEECCCCCCCCCCCCCC--CEEEE-----ECCHHHH----HHHHHHHHHHHHC-CCEEEEEEEE-----
Q ss_conf 86321------22045686000000147--31110-----0778999----9999999999984-9879999511-----
Q gi|254780696|r 220 PVGAV------NRIPSEVDNRSNIHAGG--KAELT-----KLTKIDL----DICKRIGESLRER-GLFFTGIDVI----- 276 (316)
Q Consensus 220 ~v~a~------~R~~~~~~~r~Nl~~Gg--~~~~~-----~lt~~~~----~i~~~~~~~L~~~-gl~~~GiDii----- 276 (316)
-+-.+ .|. -+||-=-| .|| ...+. -+++++. ++.......|.+. |+.|.||=..
T Consensus 220 ~~~~lp~aQDhKR~-~dgD~GPN--TGGMGAysP~~~~~P~l~~~~~~~~~~Ii~pti~~l~~e~g~~y~GvLY~GlMit 296 (485)
T PRK05784 220 SVFPLPPVQDNPHA-YEYGIGPE--TGGMGSVSGPGELLPFIEEEEYEEAVEIVKATVEAIRKETGERYVGVLSGQMMLT 296 (485)
T ss_pred EEEECCCCCCCCCC-CCCCCCCC--CCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEC
T ss_conf 69989222057655-68999989--9987006787667754479999999874899999998616997278887678861
Q ss_pred --CCEEEEEECC--CCHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf --7878898368--83037889975199989999999988
Q gi|254780696|r 277 --GDYITEINVT--SPTCIREIHRNGGENVASLFWDGIEK 312 (316)
Q Consensus 277 --g~~i~EvNvt--sP~g~~~~~~~~~~~i~~~i~d~ie~ 312 (316)
|+||+|.|+- -|- .+-+--....|+...+...++.
T Consensus 297 ~~GPkVlEfN~RfGDPE-tQ~iLp~L~sDl~~l~~a~~~g 335 (485)
T PRK05784 297 ALGPTVIEYYSRLGDPE-ALNALYLYEGDFYELFELAATG 335 (485)
T ss_pred CCCCEEEEEECCCCCCH-HHHHHHHHHCCHHHHHHHHHCC
T ss_conf 89848999968878833-8889987426399999999819
No 64
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=98.19 E-value=8.7e-07 Score=64.87 Aligned_cols=162 Identities=15% Similarity=0.204 Sum_probs=87.8
Q ss_pred HCCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECC-------CCCCHHH-HHHHHHHHCCCCCCEEECCCCCC
Q ss_conf 044310003724556888852143311168854344687448-------8711588-99999840013340021053445
Q gi|254780696|r 136 LMPPTLISRDITQITRFYLEMKDIIIKPLYGNGGTGVFRITL-------GDRNFSS-LIEMLFEKYPEPLMIQSYLPQIR 207 (316)
Q Consensus 136 ~~P~T~vt~~~~~~~~f~~~~~~vViKPl~g~~G~gV~~i~~-------~~~~~~~-~~e~~~~~~~~~ii~Qefi~~~~ 207 (316)
++|+|+..+|..++... +-.=|||+||- +||. +.+... +.+.+.. ........|.+++++|||||.-.
T Consensus 128 ~~P~Ty~v~S~~d~~~~-el~FPvILKP~--mgg~-~~~~araKa~~a~d~ee~k~a~~~a~eeigpDnvvvQe~IPGGg 203 (415)
T COG3919 128 PYPKTYLVNSEIDTLVD-ELTFPVILKPG--MGGS-VHFEARAKAFTAADNEEMKLALHRAYEEIGPDNVVVQEFIPGGG 203 (415)
T ss_pred CCCCEEEECCHHHHHHH-HEEEEEEECCC--CCCC-CEEEHHHHEEECCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 97606772314432123-14403886178--8875-10010100143167799999999988743997258877057998
Q ss_pred CC--CEEEEEECCEEEE-EEEEECCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCC-CEEEEEEEE-----CC
Q ss_conf 68--2699998998863-212204568600000014731110077899999999999999849-879999511-----78
Q gi|254780696|r 208 DG--DKRILLLNGKPVG-AVNRIPSEVDNRSNIHAGGKAELTKLTKIDLDICKRIGESLRERG-LFFTGIDVI-----GD 278 (316)
Q Consensus 208 ~g--D~Rv~vi~g~~v~-a~~R~~~~~~~r~Nl~~Gg~~~~~~lt~~~~~i~~~~~~~L~~~g-l~~~GiDii-----g~ 278 (316)
++ -+-.++-+|.+++ +..|... ..-+...-|. ...++.+ ..+...++.+.|..-+ --|+-+|+- |.
T Consensus 204 E~qfsyaAlw~~g~pvaeftarr~r--qyPvdfgyts--t~vevvD-n~Q~i~aar~~L~si~htGlvevefK~D~RDGs 278 (415)
T COG3919 204 ENQFSYAALWDKGHPVAEFTARRLR--QYPVDFGYTS--TVVEVVD-NQQVIQAARDFLESIEHTGLVEVEFKYDPRDGS 278 (415)
T ss_pred CCCCHHHHHHHCCCCHHHHHCCHHH--CCCCCCCCCC--EEEEECC-CHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC
T ss_conf 2232098898579834644234222--1886546452--7999528-289999999999863125547899875687772
Q ss_pred -EEEEEECCCCHHHHHHHHHCCCCHHHHHH
Q ss_conf -78898368830378899751999899999
Q gi|254780696|r 279 -YITEINVTSPTCIREIHRNGGENVASLFW 307 (316)
Q Consensus 279 -~i~EvNvtsP~g~~~~~~~~~~~i~~~i~ 307 (316)
+++||| .-|.-+-++-.+.|.|+...+|
T Consensus 279 ~KlldvN-pRpw~wfgl~taaG~nLg~~Lw 307 (415)
T COG3919 279 YKLLDVN-PRPWRWFGLVTAAGYNLGRYLW 307 (415)
T ss_pred EEEEEEC-CCCCCEEEEEECCCCCCCCEEE
T ss_conf 4677625-8873045477404545301478
No 65
>TIGR02712 urea_carbox urea carboxylase; InterPro: IPR014084 Members of this family are ATP-dependent urea carboxylases, including characterised members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae (Baker's yeast). The allophanate hydrolase domain of the yeast enzyme is not included in this entry and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from O. sagaranensis was shown to be highly active on acetamide and formamide as well as urea..
Probab=98.17 E-value=2.2e-05 Score=55.72 Aligned_cols=184 Identities=20% Similarity=0.252 Sum_probs=127.3
Q ss_pred HHHCC-CCE-EECCHHHHHHCCCHHHHHHHHH-----HCCCCEEECCHHHHHHHHHHHH-HHHHHCCCCCCCCCEEEECC
Q ss_conf 86235-850-4117488752565034334543-----0443100037245568888521-43311168854344687448
Q gi|254780696|r 106 EKINP-ETL-IVNNPFWIRNSPEKIFVTEFSE-----LMPPTLISRDITQITRFYLEMK-DIIIKPLYGNGGTGVFRITL 177 (316)
Q Consensus 106 e~~~~-~~~-viN~p~~i~~~~eKl~~~~~~~-----~~P~T~vt~~~~~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~ 177 (316)
|.++. |+. |==+|+.||.+.=|..+=++++ ++|=|-+..|.+++.+..++.| ||-||-..|-||.|..++ .
T Consensus 92 ~~C~~aGI~FvGPtpe~ir~fGLKHtAR~lA~~aGVPL~PGTgLL~sl~eA~~~A~~IGYPVMlKSTAGGGGIGl~~c-~ 170 (1226)
T TIGR02712 92 EACEAAGIVFVGPTPEQIRKFGLKHTARELAEAAGVPLLPGTGLLESLDEALEAAKEIGYPVMLKSTAGGGGIGLQKC-D 170 (1226)
T ss_pred HHHHHCCCEEECCCHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC-C
T ss_conf 899847957877870667443832568999996688988851558779999999864699547987078765245111-8
Q ss_pred CCCCHHHHHHHHHHHCCC-----CCCEEECCCCCCCCCEEEEEEC---CEEE------EEEEEECCCCCCCCCCCCCCCE
Q ss_conf 871158899999840013-----3400210534456826999989---9886------3212204568600000014731
Q gi|254780696|r 178 GDRNFSSLIEMLFEKYPE-----PLMIQSYLPQIRDGDKRILLLN---GKPV------GAVNRIPSEVDNRSNIHAGGKA 243 (316)
Q Consensus 178 ~~~~~~~~~e~~~~~~~~-----~ii~Qefi~~~~~gD~Rv~vi~---g~~v------~a~~R~~~~~~~r~Nl~~Gg~~ 243 (316)
+..++...+|...+.+.. =|.+.+||+.+.+ +=|=|+| |+++ |++-|.-++ ..
T Consensus 171 ~~~eL~~aFe~Vkrlg~~~F~daGVFlErfv~~ARH--vEVQifGDG~G~v~aLGeRDCSLQRRNQK-----------Vv 237 (1226)
T TIGR02712 171 NAAELAEAFETVKRLGESFFGDAGVFLERFVENARH--VEVQIFGDGKGKVVALGERDCSLQRRNQK-----------VV 237 (1226)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHCCCCE--EEEEEEECCCCCEEEEECCCCCCCCCCCC-----------EE
T ss_conf 989999999998998863236351434032037842--89987526973369971167544445665-----------58
Q ss_pred EEE---ECCHHHHHHHHHHHHHHHHCCCEE--E-EEEEECC------EEEEEECCCCHHHHH---HHHHCCCCHHHHHH
Q ss_conf 110---077899999999999999849879--9-9951178------788983688303788---99751999899999
Q gi|254780696|r 244 ELT---KLTKIDLDICKRIGESLRERGLFF--T-GIDVIGD------YITEINVTSPTCIRE---IHRNGGENVASLFW 307 (316)
Q Consensus 244 ~~~---~lt~~~~~i~~~~~~~L~~~gl~~--~-GiDiig~------~i~EvNvtsP~g~~~---~~~~~~~~i~~~i~ 307 (316)
|-+ .|+++-|+--.++|..|-+. +.| | =|-+|.| |.+||| |= -..| =|.++|+|+-+-.+
T Consensus 238 EETPAP~LP~~~R~~L~~AA~~Lg~~-V~YrSAGTVEFiYD~~~d~FYFLEVN-TR--LQVEHPvTE~VtGlDLVEWM~ 312 (1226)
T TIGR02712 238 EETPAPNLPEETRAALLAAAEKLGEA-VNYRSAGTVEFIYDEARDEFYFLEVN-TR--LQVEHPVTEMVTGLDLVEWMV 312 (1226)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHH-HCCCCCCEEEEEECCCCCCEEEEEEC-CC--CCCCCCCEEEEECCHHHHHHH
T ss_conf 72774686489999999999999997-18763760477402210871211323-41--113357301784640898999
No 66
>pfam04174 DUF407 Domain of unknown function (DUF407).
Probab=98.05 E-value=1.9e-05 Score=56.06 Aligned_cols=109 Identities=21% Similarity=0.361 Sum_probs=78.2
Q ss_pred HCCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCC-CHHHHHHHHHHHCCCCCCEEECCCCC-----CCC
Q ss_conf 044310003724556888852143311168854344687448871-15889999984001334002105344-----568
Q gi|254780696|r 136 LMPPTLISRDITQITRFYLEMKDIIIKPLYGNGGTGVFRITLGDR-NFSSLIEMLFEKYPEPLMIQSYLPQI-----RDG 209 (316)
Q Consensus 136 ~~P~T~vt~~~~~~~~f~~~~~~vViKPl~g~~G~gV~~i~~~~~-~~~~~~e~~~~~~~~~ii~Qefi~~~-----~~g 209 (316)
+.++|+.+.++++....+++....|+||.++++|.|+..-..-+. ....+...+ ......++.||.++-. .+|
T Consensus 13 p~v~TwWCG~~~~~~~Vl~nl~~lVIkp~~~~~g~~~~~g~~ls~~e~~~l~~~I-~~~P~~~VaQe~v~lSt~P~~~~g 91 (145)
T pfam04174 13 PNVPTYWCGEPEELEHVLAHLTELVIKPVGGSGGYGMLVGPAASSAELAEFAERI-RADPRNYIAQPVLQLSTVPTLVDG 91 (145)
T ss_pred CCCCCCCCCCHHHHHHHHHCHHHCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH-HHCCCCEEEEECCCCCCCCEEECC
T ss_conf 9865037998899999985676558985467788877434108999999999998-749021696442675559876689
Q ss_pred -------CEEEEEE-CC---EEE-EEEEEEC-CCCCCCCCCCCCCCEEE
Q ss_conf -------2699998-99---886-3212204-56860000001473111
Q gi|254780696|r 210 -------DKRILLL-NG---KPV-GAVNRIP-SEVDNRSNIHAGGKAEL 245 (316)
Q Consensus 210 -------D~Rv~vi-~g---~~v-~a~~R~~-~~~~~r~Nl~~Gg~~~~ 245 (316)
|.|+|.+ +| ++. |++.|++ ..+....|.++||...-
T Consensus 92 ~l~pr~~~lR~Fa~a~~~g~~VmPGGLtRVa~~~~~~~vs~~~Gg~sKD 140 (145)
T pfam04174 92 SLEPRHVDLRPFTVADGDRYTVMPGGLTRVALARGSLVVNSSQGGGSKD 140 (145)
T ss_pred CEEECEEEEEEEEEECCCCEEEECCCEEEEECCCCCEEEECCCCCCCCE
T ss_conf 1630501389999976997699789143720689974787689986543
No 67
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=98.04 E-value=0.00017 Score=49.87 Aligned_cols=281 Identities=17% Similarity=0.210 Sum_probs=153.2
Q ss_pred CCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEE-EEECCC-CCEEEECCCCC-CC
Q ss_conf 5331899709988848476467999999998898899995412489998999999999-980777-41265046443-52
Q gi|254780696|r 3 KIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPL-SLDEKK-EQYYSLGEEKI-ID 79 (316)
Q Consensus 3 k~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i-~i~~~~-~~~f~~~~~~~-~~ 79 (316)
+++||++- -...-.++..++|...|...--+.+..=..+-.+-.|.-+.. .-...+ +-+..+.+-.. -.
T Consensus 6 ~~~KvLVA--------NRgEIAIRvFRAa~ELgi~TVAIys~ED~~S~HR~KADEsY~iG~~~~Pi~aYL~IdeII~iAk 77 (1149)
T COG1038 6 KIKKVLVA--------NRGEIAIRVFRAANELGIKTVAIYSEEDRLSLHRFKADESYLIGEGKGPVEAYLSIDEIIRIAK 77 (1149)
T ss_pred HHHEEEEE--------CCCHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHCCCCCEEECCCCCCCHHHHCCHHHHHHHHH
T ss_conf 10202550--------4533669999988860864899851445430443035510660678872687432999999999
Q ss_pred HHHCCEEEEECCCCCCHHHHH-HHHHHHHH-CCCCE-EECCHHHHHHCCCHHHHHHHHH-----HCCCCE-EECCHHHHH
Q ss_conf 100636688328862247999-99999862-35850-4117488752565034334543-----044310-003724556
Q gi|254780696|r 80 LSQMDVILIRQDPPFNMHYIT-STYLLEKI-NPETL-IVNNPFWIRNSPEKIFVTEFSE-----LMPPTL-ISRDITQIT 150 (316)
Q Consensus 80 L~~fD~i~iR~dPp~d~~yi~-~~~~Le~~-~~~~~-viN~p~~i~~~~eKl~~~~~~~-----~~P~T~-vt~~~~~~~ 150 (316)
.+..|+|.+--. +++ +...-+.+ +.|.. +--.|..|+.+.||..+-.... .+|-|- -..+.+++.
T Consensus 78 ~~gaDaIhPGYG------fLSEn~efA~~c~eaGI~FIGP~~e~ld~~GdKv~Ar~~A~~agvPvipgt~~~~~~~ee~~ 151 (1149)
T COG1038 78 RSGADAIHPGYG------FLSENPEFARACAEAGITFIGPKPEVLDMLGDKVKARNAAIKAGVPVIPGTDGPIETIEEAL 151 (1149)
T ss_pred HCCCCEECCCCC------CCCCCHHHHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
T ss_conf 708873137843------24479899999997597896888799988442888999999759985569999821299999
Q ss_pred HHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHH-----HHHHHHCCCCCCEEECCCCCCCCCEEEEEEC---CEEE
Q ss_conf 8888521-43311168854344687448871158899-----9998400133400210534456826999989---9886
Q gi|254780696|r 151 RFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLI-----EMLFEKYPEPLMIQSYLPQIRDGDKRILLLN---GKPV 221 (316)
Q Consensus 151 ~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~-----e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~---g~~v 221 (316)
+|.+++| |+++|-..|.||+|.-.+. ++.++...+ |....-++..+++.+|++..++ +-|-+++ |.++
T Consensus 152 ~fa~~~gyPvmiKA~~GGGGRGMR~vr-~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve~pkH--IEVQiLgD~~Gnvv 228 (1149)
T COG1038 152 EFAEEYGYPVMIKAAAGGGGRGMRVVR-SEADLAEAFERAKSEAKAAFGNDEVYVEKLVENPKH--IEVQILGDTHGNVV 228 (1149)
T ss_pred HHHHHCCCCEEEEECCCCCCCCEEEEC-CHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHCCCCE--EEEEEEECCCCCEE
T ss_conf 999866985899971479866526625-888999999998899997418980665655248652--68998605778788
Q ss_pred EEEEEECCCCCCCCCCCCCCCEEEEECCHHHH-HHHHHHHHHHHHCCCEEEE-EEEE----CC-EEEEEECCCCHHHHH-
Q ss_conf 32122045686000000147311100778999-9999999999984987999-9511----78-788983688303788-
Q gi|254780696|r 222 GAVNRIPSEVDNRSNIHAGGKAELTKLTKIDL-DICKRIGESLRERGLFFTG-IDVI----GD-YITEINVTSPTCIRE- 293 (316)
Q Consensus 222 ~a~~R~~~~~~~r~Nl~~Gg~~~~~~lt~~~~-~i~~~~~~~L~~~gl~~~G-iDii----g~-~i~EvNvtsP~g~~~- 293 (316)
+-+.|--+- -|-|-..=-.+-...|+++.+ +||..+.+..++-|-.=|| |.++ |. |.+||| |--..|
T Consensus 229 HLfERDCSv--QRRhQKVVE~APa~~L~~~~R~~ic~~Avkla~~~~Y~~AGTvEFLvd~~~~fyFIEvN---PRiQVEH 303 (1149)
T COG1038 229 HLFERDCSV--QRRHQKVVEVAPAPYLSPELRDEICDDAVKLARNIGYINAGTVEFLVDEDGKFYFIEVN---PRIQVEH 303 (1149)
T ss_pred EEEECCCCH--HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEEC---CCEEEEE
T ss_conf 886235533--10144037856888899999999999999999973976566478887388868999954---7345677
Q ss_pred --HHHHCCCCHHHH
Q ss_conf --997519998999
Q gi|254780696|r 294 --IHRNGGENVASL 305 (316)
Q Consensus 294 --~~~~~~~~i~~~ 305 (316)
-+..||+||-+.
T Consensus 304 TiTE~vTgiDIV~a 317 (1149)
T COG1038 304 TITEEITGIDIVKA 317 (1149)
T ss_pred EEEEEEECHHHHHH
T ss_conf 64554412167887
No 68
>pfam03738 GSP_synth Glutathionylspermidine synthase. This region contains the Glutathionylspermidine synthase enzymatic activity EC:6.3.1.8. This is the C-terminal region in bienzymes. Glutathionylspermidine (GSP) synthetases of Trypanosomatidae and Escherichia coli couple hydrolysis of ATP (to ADP and Pi) with formation of an amide bond between spermidine and the glycine carboxylate of glutathione (gamma-Glu-Cys-Gly). In the pathogenic trypanosomatids, this reaction is the penultimate step in the biosynthesis of the antioxidant metabolite, trypanothione (N1,N8-bis-(glutathionyl)spermidine), and is a target for drug design.
Probab=97.77 E-value=5.8e-05 Score=52.90 Aligned_cols=193 Identities=16% Similarity=0.137 Sum_probs=105.3
Q ss_pred EEEEE--ECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHEEEECCE-EE-EEEEEEEEECCCCCEEEECCCCCCCHH
Q ss_conf 18997--099888484764679999999988988999954124899989-99-999999980777412650464435210
Q gi|254780696|r 6 NIAIQ--MNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSK-IY-ANTQPLSLDEKKEQYYSLGEEKIIDLS 81 (316)
Q Consensus 6 kI~fi--mDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~-v~-A~~~~i~i~~~~~~~f~~~~~~~~~L~ 81 (316)
+|.|. -|..|.. -|+..|+..|+.-|+++.++...++.+.... .+ ...+++ .-.|++-..+.+
T Consensus 159 ~ihf~~~~~~~ED~----~T~~yL~~~a~~AG~~t~~~~i~di~~~~~g~~~D~~g~~I------~~lfKlYPwE~~--- 225 (372)
T pfam03738 159 KIHFSAVDDSEEDR----GTVLYLQDTARQAGLETKFIDIEDIGLDEDGRFVDLDGRPI------EYLFKLYPWEWM--- 225 (372)
T ss_pred EEEEEECCCCHHHH----HHHHHHHHHHHHCCCCEEEEEHHHEEECCCCCEECCCCCCH------HHHHHHCCHHHH---
T ss_conf 69999689977999----99999999999779955787756147868896889999794------466745579998---
Q ss_pred HCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEECCHHHHHHCCCHHHHH---HHHH--HCCCCEEECCHHHHHHHHHHH
Q ss_conf 06366883288622479999999986235850411748875256503433---4543--044310003724556888852
Q gi|254780696|r 82 QMDVILIRQDPPFNMHYITSTYLLEKINPETLIVNNPFWIRNSPEKIFVT---EFSE--LMPPTLISRDITQITRFYLEM 156 (316)
Q Consensus 82 ~fD~i~iR~dPp~d~~yi~~~~~Le~~~~~~~viN~p~~i~~~~eKl~~~---~~~~--~~P~T~vt~~~~~~~~f~~~~ 156 (316)
++ |+ | .. .|.....++.+||.|-.+.-.|-=+.++ .||. ...+|....++.. .
T Consensus 226 ------~~-e~-~------~~-~l~~~~~~~~~ieP~wk~llsnKalLalLW~l~p~hp~LLptyfe~~~~~-------~ 283 (372)
T pfam03738 226 ------LR-DE-F------GA-ALLLALGKVRWIEPAWKAILSNKAILPLLWELFPGHPNLLPAYFEDDPLA-------G 283 (372)
T ss_pred ------HH-CC-C------CH-HHHHCCCCCEEECHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHCCCCCCC-------C
T ss_conf ------52-71-0------00-34641477089561589885064799999985589912042325886445-------7
Q ss_pred HHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCE----EEEEECCEEEEEEEEECCCCC
Q ss_conf 1433111688543446874488711588999998400133400210534456826----999989988632122045686
Q gi|254780696|r 157 KDIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDK----RILLLNGKPVGAVNRIPSEVD 232 (316)
Q Consensus 157 ~~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~----Rv~vi~g~~v~a~~R~~~~~~ 232 (316)
.+.|.||++|-.|.+|........ . .+.-...+..+.|.|+|.+-...++. -..++||++.|...|... +-
T Consensus 284 ~~yV~KP~~gREG~nV~i~~~g~~-~---~~~~g~Y~~~~~IyQ~~~~Lp~~~~~y~viGswiv~~~~aGigiRe~~-~~ 358 (372)
T pfam03738 284 TGYVKKPIFGREGANVTIIEDGKV-L---AETDGPYGEEGYIYQQYAELPKFDGYYPVIGSWLVGDEAAGLGIREDK-SL 358 (372)
T ss_pred CCCEEEECCCCCCCCEEEEECCCE-E---ECCCCCCCCCCEEEEECCCCCCCCCCEEEEEEEEECCEEEEEEEECCC-CC
T ss_conf 772753235666897799728945-4---236898788874999727687568966899999999998699995168-64
Q ss_pred CCCCCC
Q ss_conf 000000
Q gi|254780696|r 233 NRSNIH 238 (316)
Q Consensus 233 ~r~Nl~ 238 (316)
...|.|
T Consensus 359 IT~n~S 364 (372)
T pfam03738 359 ITGNLS 364 (372)
T ss_pred CCCCCC
T ss_conf 169987
No 69
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=97.74 E-value=2.8e-05 Score=54.97 Aligned_cols=197 Identities=17% Similarity=0.220 Sum_probs=107.2
Q ss_pred EEEEEECC-HHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHEEEECC-EEE-EEEEEEEEECCCCCEEEECCCCCCCHHH
Q ss_conf 18997099-88848476467999999998898899995412489998-999-9999999807774126504644352100
Q gi|254780696|r 6 NIAIQMNH-ISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDS-KIY-ANTQPLSLDEKKEQYYSLGEEKIIDLSQ 82 (316)
Q Consensus 6 kI~fimDp-i~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g-~v~-A~~~~i~i~~~~~~~f~~~~~~~~~L~~ 82 (316)
.+++..|+ +|. .-|+..|+..|.+-|++..++...++.+.++ ..+ ...++ -..+|++-..+.+--
T Consensus 177 ~f~~~~~~~~ED----~~T~~yL~~~A~qAG~~t~~i~i~dIg~~~~g~f~D~~~~~------I~~lfKLyPWE~m~~-- 244 (395)
T PHA02117 177 CLNIVATSQVDD----FATIAYIGETAAEAGIPVKVFDISEIQMSDAGRFYDQEDRL------IEYCFKLYPWEWMME-- 244 (395)
T ss_pred EEEEECCCCHHH----HHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCEECCCCCC------HHHHHHHHCHHHHHH--
T ss_conf 899908996788----99999999999976984378871453275889788999888------768887607988724--
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEECCHHHHHHCCCH-HHHH---HHHHH--CCCCEEECCHHHHHHHHHHH
Q ss_conf 636688328862247999999998623585041174887525650-3433---45430--44310003724556888852
Q gi|254780696|r 83 MDVILIRQDPPFNMHYITSTYLLEKINPETLIVNNPFWIRNSPEK-IFVT---EFSEL--MPPTLISRDITQITRFYLEM 156 (316)
Q Consensus 83 fD~i~iR~dPp~d~~yi~~~~~Le~~~~~~~viN~p~~i~~~~eK-l~~~---~~~~~--~P~T~vt~~~~~~~~f~~~~ 156 (316)
.++ ..+++ +.++.+||.|-.+.- .|| +.++ .||.. .-+|+...+.+.........
T Consensus 245 -------------d~f--~~~l~---~~~~~~iEP~Wk~ll-SNKaiL~lLW~lfp~HP~LLpay~~~~~~~~~~~~~~~ 305 (395)
T PHA02117 245 -------------DEF--GAYAH---KSGTRFIEPAWKMML-SNKALLVLLYERYPDCKWLVPAYEEDDFDRLNLFTFEN 305 (395)
T ss_pred -------------HHH--HHHHH---HCCCEEECHHHHHHH-CCHHHHHHHHHHCCCCCCCCHHHHCCCHHHCCCCCCCC
T ss_conf -------------177--76775---468777355689885-15379999998669992003344237411113332246
Q ss_pred HHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCC-CCC---EEEEEECCEEEEEEEEECCCCC
Q ss_conf 143311168854344687448871158899999840013340021053445-682---6999989988632122045686
Q gi|254780696|r 157 KDIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIR-DGD---KRILLLNGKPVGAVNRIPSEVD 232 (316)
Q Consensus 157 ~~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~-~gD---~Rv~vi~g~~v~a~~R~~~~~~ 232 (316)
+..|-||++|-.|.+|..+..... .. ..-...+..+.|.|+|.+-.. +|. +-+.+|||++.|.-.|.. .|-
T Consensus 306 ~~yV~KPlfgREGaNV~i~~~g~~-~~---~~~G~Y~~~~~IyQ~~~~Lp~~~g~~~~iGsw~v~~~~aGlgiRed-~~~ 380 (395)
T PHA02117 306 PKWVSKPLLSREGSNVHIFEYGGE-SE---FTDGNYAEEPRIVQQYIEWQEFDGCYPMIGVWMVGSDAVGLGIRED-DGR 380 (395)
T ss_pred CCEEECCCCCCCCCCEEEEECCCE-EE---CCCCCCCCCCEEEEECCCCCCCCCCEEEEEEEEECCEEEEEEEECC-CCC
T ss_conf 872621243556788699948957-84---1589878888599943799755893789989999998748999427-973
Q ss_pred CCCCCC
Q ss_conf 000000
Q gi|254780696|r 233 NRSNIH 238 (316)
Q Consensus 233 ~r~Nl~ 238 (316)
...|.|
T Consensus 381 IT~n~S 386 (395)
T PHA02117 381 ITGNNS 386 (395)
T ss_pred CCCCCC
T ss_conf 358987
No 70
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=97.72 E-value=0.0023 Score=42.48 Aligned_cols=182 Identities=20% Similarity=0.261 Sum_probs=112.3
Q ss_pred CCE-EECCHHHHHHCCCHHHHHHHHH-----HCCCCE-EECCHHHHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCH
Q ss_conf 850-4117488752565034334543-----044310-0037245568888521-4331116885434468744887115
Q gi|254780696|r 111 ETL-IVNNPFWIRNSPEKIFVTEFSE-----LMPPTL-ISRDITQITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNF 182 (316)
Q Consensus 111 ~~~-viN~p~~i~~~~eKl~~~~~~~-----~~P~T~-vt~~~~~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~ 182 (316)
|.. +--+|.+|+...+|..+-.+.. .+|-+. -..|.+++..+.+++| ||.+|...|-||+|.-.+ .+...+
T Consensus 99 GlvfIGP~~~aI~aMGdK~~AK~l~~~AgVp~VPG~~g~~qd~~~~~~~A~eiGyPVlIKAsaGGGGKGMRvv-~~~~e~ 177 (645)
T COG4770 99 GLVFIGPSAGAIRAMGDKIAAKKLAAEAGVPTVPGYHGPIQDAAELVAIAEEIGYPVLIKASAGGGGKGMRVV-ETPEEF 177 (645)
T ss_pred CCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEE-CCHHHH
T ss_conf 9189788979999844679999999974998068978744589999999986398589996368997753762-688999
Q ss_pred HHHHHH-----HHHHCCCCCCEEECCCCCCCCCEEEEEECC---EEEE------EEEEECCCCCCCCCCCCCCCEEEEEC
Q ss_conf 889999-----984001334002105344568269999899---8863------21220456860000001473111007
Q gi|254780696|r 183 SSLIEM-----LFEKYPEPLMIQSYLPQIRDGDKRILLLNG---KPVG------AVNRIPSEVDNRSNIHAGGKAELTKL 248 (316)
Q Consensus 183 ~~~~e~-----~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~g---~~v~------a~~R~~~~~~~r~Nl~~Gg~~~~~~l 248 (316)
...+++ ...-+..-+++.+|+....+ +-|-|+++ .++. ++-|..++= . -.+-.--|
T Consensus 178 ~e~l~sarrEA~asFGddrv~iEkyl~~PRH--IEiQV~aD~HGNvv~LgERdCSlQRRhQKV--I------EEAPaP~l 247 (645)
T COG4770 178 AEALESARREAKASFGDDRVFIEKYLDKPRH--IEIQVFADQHGNVVHLGERDCSLQRRHQKV--I------EEAPAPFL 247 (645)
T ss_pred HHHHHHHHHHHHHHCCCCEEEHHHHCCCCCE--EEEEEEECCCCCEEEEECCCCCHHHHCCHH--H------HCCCCCCC
T ss_conf 9999999999885048864762455178744--899998627787888632533242311223--2------00899999
Q ss_pred CHHHHH-HHHHHHHHHHHCCCEEEE-EEEE----CC-EEEEEE----CCCCHHHHHHHHHCCCCHHHHHH
Q ss_conf 789999-999999999984987999-9511----78-788983----68830378899751999899999
Q gi|254780696|r 249 TKIDLD-ICKRIGESLRERGLFFTG-IDVI----GD-YITEIN----VTSPTCIREIHRNGGENVASLFW 307 (316)
Q Consensus 249 t~~~~~-i~~~~~~~L~~~gl~~~G-iDii----g~-~i~EvN----vtsP~g~~~~~~~~~~~i~~~i~ 307 (316)
+++.++ +.+.+...-+.-|-+=|| |.+| +. |.+|+| |--|- -+..||+|+-..-+
T Consensus 248 ~~~~R~amg~aAv~~a~avgY~gAGTVEFivd~~~~f~FlEMNTRLQVEHPV----TE~iTGiDLVewqi 313 (645)
T COG4770 248 TEETREAMGEAAVAAAKAVGYVGAGTVEFIVDADGNFYFLEMNTRLQVEHPV----TELITGIDLVEWQI 313 (645)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEEECCEECCCCC----HHHHHHHHHHHHHH
T ss_conf 9999999999999999862977575589998389868999862202025641----22420138999999
No 71
>KOG0369 consensus
Probab=97.67 E-value=0.00098 Score=44.88 Aligned_cols=188 Identities=22% Similarity=0.270 Sum_probs=109.0
Q ss_pred CCCE-EECCHHHHHHCCCHHHHHHHHH-----HCCCCE-EECCHHHHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCC
Q ss_conf 5850-4117488752565034334543-----044310-0037245568888521-433111688543446874488711
Q gi|254780696|r 110 PETL-IVNNPFWIRNSPEKIFVTEFSE-----LMPPTL-ISRDITQITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRN 181 (316)
Q Consensus 110 ~~~~-viN~p~~i~~~~eKl~~~~~~~-----~~P~T~-vt~~~~~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~ 181 (316)
.|.. +--+|..+....||..+-...- ..|-|- -....+++.+|.++|| |+|+|-.+|.||+|+-.+.+.+ +
T Consensus 130 AGi~fiGPspeVi~~mGDKv~AR~~Ai~agVpvVPGTpgPitt~~EA~eF~k~yG~PvI~KAAyGGGGRGmRvVr~~e-~ 208 (1176)
T KOG0369 130 AGIRFIGPSPEVIDSMGDKVAARAIAIEAGVPVVPGTPGPITTVEEALEFVKEYGLPVIIKAAYGGGGRGMRVVRSGE-D 208 (1176)
T ss_pred CCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEECHH-H
T ss_conf 596696889799988420888889999719971589999754299999999861983899610168976437750255-6
Q ss_pred HHH-----HHHHHHHHCCCCCCEEECCCCCCCCCEEEEEECC---EEEEEEEEECCCCCCCCCCCCC--CCEEEEECCHH
Q ss_conf 588-----9999984001334002105344568269999899---8863212204568600000014--73111007789
Q gi|254780696|r 182 FSS-----LIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNG---KPVGAVNRIPSEVDNRSNIHAG--GKAELTKLTKI 251 (316)
Q Consensus 182 ~~~-----~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~g---~~v~a~~R~~~~~~~r~Nl~~G--g~~~~~~lt~~ 251 (316)
... .-|.+..-++..+.+.+||+..+ -+-|-++++ .+++-+.|--+- .-| ||- --+-.-.|.++
T Consensus 209 vee~f~Ra~SEA~aaFGnG~~FvEkF~ekPr--HIEvQllgD~~GNvvHLyERDCSv-QRR---HQKVVEiAPA~~Lp~~ 282 (1176)
T KOG0369 209 VEEAFQRAYSEALAAFGNGTLFVEKFLEKPR--HIEVQLLGDKHGNVVHLYERDCSV-QRR---HQKVVEIAPAKTLPPE 282 (1176)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEHHHHHCCCC--EEEEEEECCCCCCEEEEEECCCCH-HHH---HCCEEEECCCCCCCHH
T ss_conf 9999998889999861786153786625865--268987213568789876145516-432---0103673455659989
Q ss_pred HHH-HHHHHHHHHHHCCCEEEE-EEEE----CC-EEEEEECCCCHHHHH---HHHHCCCCHHHHHH
Q ss_conf 999-999999999984987999-9511----78-788983688303788---99751999899999
Q gi|254780696|r 252 DLD-ICKRIGESLRERGLFFTG-IDVI----GD-YITEINVTSPTCIRE---IHRNGGENVASLFW 307 (316)
Q Consensus 252 ~~~-i~~~~~~~L~~~gl~~~G-iDii----g~-~i~EvNvtsP~g~~~---~~~~~~~~i~~~i~ 307 (316)
.++ +...+.+.-+.-|-.-|| +.++ |. |.+||| |--..| -++.+|+|+-..-+
T Consensus 283 vR~~~~~davklAk~vgY~NAGTvEFLvD~~g~hYFIEvN---~RlQVEHTvTEEITgvDlV~aQi 345 (1176)
T KOG0369 283 VRDAILTDAVKLAKHVGYENAGTVEFLVDQKGRHYFIEVN---PRLQVEHTVTEEITGVDLVQAQI 345 (1176)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEEC---CCEEEEEEEEEEECCCCHHHHHH
T ss_conf 9999999999999984756577078877167978999954---64356655231004520101111
No 72
>KOG0238 consensus
Probab=97.60 E-value=0.0078 Score=38.96 Aligned_cols=178 Identities=20% Similarity=0.292 Sum_probs=105.6
Q ss_pred CCE-EECCHHHHHHCCCHHHHHHHHH-----HCCC-CEEECCHHHHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCH
Q ss_conf 850-4117488752565034334543-----0443-100037245568888521-4331116885434468744887115
Q gi|254780696|r 111 ETL-IVNNPFWIRNSPEKIFVTEFSE-----LMPP-TLISRDITQITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNF 182 (316)
Q Consensus 111 ~~~-viN~p~~i~~~~eKl~~~~~~~-----~~P~-T~vt~~~~~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~ 182 (316)
|.. +--+|++||...+|..+-+... .+|- .-.-.|.+.+.+...+.| ||.+|+..|.||+|. ++..+++++
T Consensus 95 Gi~FiGP~~~aIrdMG~K~~sk~im~~AgVp~vpG~~g~~qs~e~~~~~a~eIgyPvMiKa~~GGGGkGM-ria~~~~ef 173 (670)
T KOG0238 95 GITFIGPPPSAIRDMGDKSTSKQIMKAAGVPLVPGYHGEDQSDEEAKKVAREIGYPVMIKATAGGGGKGM-RIAWSEEEF 173 (670)
T ss_pred CCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCE-EEECCHHHH
T ss_conf 9868798879988731257789999864996136856432667999999986198579995157887631-751486889
Q ss_pred HHHHHHH-----HHHCCCCCCEEECCCCCCCCCEEEEEECCE---EE------EEEEEECCCCCCCCCCCCCCCEEEEEC
Q ss_conf 8899999-----840013340021053445682699998998---86------321220456860000001473111007
Q gi|254780696|r 183 SSLIEML-----FEKYPEPLMIQSYLPQIRDGDKRILLLNGK---PV------GAVNRIPSEVDNRSNIHAGGKAELTKL 248 (316)
Q Consensus 183 ~~~~e~~-----~~~~~~~ii~Qefi~~~~~gD~Rv~vi~g~---~v------~a~~R~~~~~~~r~Nl~~Gg~~~~~~l 248 (316)
...++.. ..-+.+-+++.+||.+..+ +-+-|++++ .+ +++-|..++ .=-.+-.-.|
T Consensus 174 ~~~~~~ak~Ea~~sFGdd~~llEkfi~npRH--iEvQv~gD~hGnav~l~ERdCSvQRRnQK--------iiEEaPap~l 243 (670)
T KOG0238 174 EEGLESAKQEAAKSFGDDGMLLEKFIDNPRH--IEVQVFGDKHGNAVHLGERDCSVQRRNQK--------IIEEAPAPNL 243 (670)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHCCCCCE--EEEEEEECCCCCEEEECCCCCCHHHHHHH--------HHHCCCCCCC
T ss_conf 9999988888876318641107776368754--89999734777688850454424232115--------6630899999
Q ss_pred CHHHH----HHHHHHHHHHHHCCCEEEE-EEEEC----C-EEEEEE----CCCCHHHHHHHHHCCCCHHHHH
Q ss_conf 78999----9999999999984987999-95117----8-788983----6883037889975199989999
Q gi|254780696|r 249 TKIDL----DICKRIGESLRERGLFFTG-IDVIG----D-YITEIN----VTSPTCIREIHRNGGENVASLF 306 (316)
Q Consensus 249 t~~~~----~i~~~~~~~L~~~gl~~~G-iDiig----~-~i~EvN----vtsP~g~~~~~~~~~~~i~~~i 306 (316)
+++.+ +-|.++++.+ |-.=|| |.+|- . |.+|+| |--|- -+-.+|+|+-+.-
T Consensus 244 ~~e~R~~lgeaAv~aa~av---gY~~aGTVEFi~D~~~~FyFmEmNTRLQVEHPv----TEmItg~DLVewq 308 (670)
T KOG0238 244 PEETRRALGEAAVRAAKAV---GYVGAGTVEFIVDSKDNFYFMEMNTRLQVEHPV----TEMITGTDLVEWQ 308 (670)
T ss_pred CHHHHHHHHHHHHHHHHHH---CCCCCCEEEEEECCCCCEEEEEEECEEEECCCC----HHHCCCHHHHHHH
T ss_conf 9899999999999998863---876444499998378857999840225303641----6321222789999
No 73
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=97.44 E-value=0.0025 Score=42.18 Aligned_cols=251 Identities=18% Similarity=0.277 Sum_probs=150.7
Q ss_pred HHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHHHCCEEEEECCCCCCHHHHHHHHH---
Q ss_conf 99999889889999541248999899999999998077741265046443521006366883288622479999999---
Q gi|254780696|r 28 ALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQMDVILIRQDPPFNMHYITSTYL--- 104 (316)
Q Consensus 28 m~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~~fD~i~iR~dPp~d~~yi~~~~~--- 104 (316)
.+|...-|++|=..+++=-++.-+.-+|.--.+. +-.|+-+. +.+--..=|+|++ ++-+-|++.+
T Consensus 33 cKALkEEGy~viLVNsNpATimTD~~~AD~vY~e----PlT~e~V~--~IIEKERPDgiL~------t~GGQTALNlav~ 100 (1089)
T TIGR01369 33 CKALKEEGYEVILVNSNPATIMTDPEMADKVYIE----PLTPEAVE--KIIEKERPDGILP------TLGGQTALNLAVE 100 (1089)
T ss_pred HHHHHHCCCEEEEECCCCCCCCCCHHHCCCCCCC----CCCHHHHH--HHHHHCCCCCHHC------CCCCHHHHHHHHH
T ss_conf 9998764957999758847233886686600252----54588886--6653168660002------5760357777886
Q ss_pred HHH---HCC-CCEEE-CCHHHHHHCCCH-HHH---HHHHHHCCCCEEECCHHHHHHHHHHHH-HHHHHCCCCCCCCCEEE
Q ss_conf 986---235-85041-174887525650-343---345430443100037245568888521-43311168854344687
Q gi|254780696|r 105 LEK---INP-ETLIV-NNPFWIRNSPEK-IFV---TEFSELMPPTLISRDITQITRFYLEMK-DIIIKPLYGNGGTGVFR 174 (316)
Q Consensus 105 Le~---~~~-~~~vi-N~p~~i~~~~eK-l~~---~~~~~~~P~T~vt~~~~~~~~f~~~~~-~vViKPl~g~~G~gV~~ 174 (316)
|+. |++ ||.|+ =.-++|..+-|- +|- .+...++|++.+.++.+++.+|.++.| |||+-|.|--||.|=-
T Consensus 101 L~~~GVL~kYgV~vLGT~~eaI~kaEDRe~F~~~M~ei~~pvp~S~~~~~~eEA~~~a~~~GyPviVRpAftLGG~GgG- 179 (1089)
T TIGR01369 101 LEESGVLEKYGVEVLGTPVEAIKKAEDRELFREAMKEIGEPVPKSEIVHSVEEALKAAKEIGYPVIVRPAFTLGGTGGG- 179 (1089)
T ss_pred HHHCCCCHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCHHCCCCCCC-
T ss_conf 6206851452917852342435202027999999997389988110027889999999626896898100323889985-
Q ss_pred ECCCCCCHHHHHHHHHHHCC-CCCCEEECCCCCCCCCEEEEEECC-----EEEEEEEE-----ECCCCCCCCCCCCCCCE
Q ss_conf 44887115889999984001-334002105344568269999899-----88632122-----04568600000014731
Q gi|254780696|r 175 ITLGDRNFSSLIEMLFEKYP-EPLMIQSYLPQIRDGDKRILLLNG-----KPVGAVNR-----IPSEVDNRSNIHAGGKA 243 (316)
Q Consensus 175 i~~~~~~~~~~~e~~~~~~~-~~ii~Qefi~~~~~gD~Rv~vi~g-----~~v~a~~R-----~~~~~~~r~Nl~~Gg~~ 243 (316)
|..+.+.+..+.+....... ..+++.|.|..-++ +=-=|+-+ -+||+|.= ++.+.+... |
T Consensus 180 iA~n~eEL~~~~~~aL~~SpI~qvL~EkSl~GWKE--~EYEVmRD~~dNCItVCNmEN~DPmGVHTGdSIVV-------A 250 (1089)
T TIGR01369 180 IASNEEELKEIVERALSASPINQVLVEKSLAGWKE--IEYEVMRDSKDNCITVCNMENFDPMGVHTGDSIVV-------A 250 (1089)
T ss_pred EECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCEE--EEEEEEEECCCCEEEEECCCCCCCCCEEECCCEEE-------C
T ss_conf 22577899999998863088855750110033178--89889862687889997454768984570783365-------0
Q ss_pred EEEECCHHHHH----HHHHHHHHHHHCCCEEEEEEE---EC-----CEEEEEECCCCHHHHH---HHHHCCCCHHHHH
Q ss_conf 11007789999----999999999984987999951---17-----8788983688303788---9975199989999
Q gi|254780696|r 244 ELTKLTKIDLD----ICKRIGESLRERGLFFTGIDV---IG-----DYITEINVTSPTCIRE---IHRNGGENVASLF 306 (316)
Q Consensus 244 ~~~~lt~~~~~----i~~~~~~~L~~~gl~~~GiDi---ig-----~~i~EvNvtsP~g~~~---~~~~~~~~i~~~i 306 (316)
=.-+||++|-+ .+.+|...| |+-=.|==+ +. .||+||| |===|. ..++||-+||+.=
T Consensus 251 PSQTLtD~EYQ~LR~~sikIIR~l---Gi~GgGCNvQFAL~P~s~~Y~vIEvN---PRvSRSSALASKATGYPiAkvA 322 (1089)
T TIGR01369 251 PSQTLTDKEYQMLRDASIKIIREL---GIVGGGCNVQFALDPDSGRYYVIEVN---PRVSRSSALASKATGYPIAKVA 322 (1089)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHC---CCEECCCCEEEEECCCCCCEEEEEEC---CCCCHHHHHHHHHHCCHHHHHH
T ss_conf 763688078999999999999873---91216742132150789706999867---8821358987665166289999
No 74
>COG0754 Gsp Glutathionylspermidine synthase [Amino acid transport and metabolism]
Probab=97.44 E-value=0.00016 Score=49.98 Aligned_cols=185 Identities=16% Similarity=0.167 Sum_probs=107.5
Q ss_pred EEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHHHCCE
Q ss_conf 18997099888484764679999999988988999954124899989999999999807774126504644352100636
Q gi|254780696|r 6 NIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQMDV 85 (316)
Q Consensus 6 kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~~fD~ 85 (316)
-+.+.-|.+|.-- |+..|..+|+.+|++..+....++.+.....+..... ..-..+|++-..+.+-
T Consensus 174 ~~s~~~d~~Ed~~----tv~~L~D~a~~AG~et~fl~i~digl~e~G~f~D~~n----~~i~~lfKLypwE~m~------ 239 (387)
T COG0754 174 GFSICQDTAEDRG----TVQYLQDCAQEAGFETEFLYIDDIGLGEDGQFTDLDN----QVIERLFKLYPWEDML------ 239 (387)
T ss_pred EEEEECCCHHHHH----HHHHHHHHHHHCCCCCCEEEEHHCCCCCCCEEECCCC----HHHHHHHHHCCHHHHH------
T ss_conf 8886058066567----9999999999738663311101115476751644774----0687888734799999------
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCEEECCHHHHHHCCCH-HHHH---HHHH--HCCCCEEECCHHHHHHHHHHHHHH
Q ss_conf 688328862247999999998623585041174887525650-3433---4543--044310003724556888852143
Q gi|254780696|r 86 ILIRQDPPFNMHYITSTYLLEKINPETLIVNNPFWIRNSPEK-IFVT---EFSE--LMPPTLISRDITQITRFYLEMKDI 159 (316)
Q Consensus 86 i~iR~dPp~d~~yi~~~~~Le~~~~~~~viN~p~~i~~~~eK-l~~~---~~~~--~~P~T~vt~~~~~~~~f~~~~~~v 159 (316)
| .. ....|+. ..+.+++.+ .-....|| +.++ .||. ..-+|..+.+.. . +....-
T Consensus 240 ---~------e~---~~~~l~~--~~~~~lEPa-Wk~ilsNK~lLplLW~~fPnHp~LLpt~F~~~~~-~----k~~~~y 299 (387)
T COG0754 240 ---R------EE---LAQNLEN--ARTIFLEPA-WKSILSNKALLPLLWERFPNHPNLLPTYFEPDDE-E----KLGESY 299 (387)
T ss_pred ---H------HH---HHHHHCC--CCCEEECHH-HHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCC-C----CCHHHH
T ss_conf ---9------89---9887336--772796546-8877345108999998679983436454788743-2----222455
Q ss_pred HHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCE----EEEEECCEEEEEEEEE
Q ss_conf 3111688543446874488711588999998400133400210534456826----9999899886321220
Q gi|254780696|r 160 IIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDK----RILLLNGKPVGAVNRI 227 (316)
Q Consensus 160 ViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~----Rv~vi~g~~v~a~~R~ 227 (316)
|.||++|..|.+|..+....+.. ...-...+.+..|.|+|.|-.+-||. --.+||+++.|.-.|.
T Consensus 300 v~KPl~gREGaNv~i~~~~~~v~---~~~~G~Yg~eg~IyQe~~~Lpk~~~~Y~~vgSw~v~d~~cG~glRe 368 (387)
T COG0754 300 VRKPLFGREGANVSIFEDAGKVL---DKADGPYGEEGMIYQEFYPLPKFGDSYYQVGSWVVGDEACGIGLRE 368 (387)
T ss_pred HCCCCCCCCCCCEEEEECCCCEE---ECCCCCCCCCCHHHHHHCCCCCCCCCEEEEEEEEECCCCCEEEECC
T ss_conf 10222256678757772578455---0378886766423554305754577017877899875112046626
No 75
>KOG0370 consensus
Probab=97.27 E-value=0.0036 Score=41.15 Aligned_cols=192 Identities=17% Similarity=0.293 Sum_probs=122.1
Q ss_pred CCEEE-CCHHHHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHH
Q ss_conf 85041-17488752565034334543----0443100037245568888521-433111688543446874488711588
Q gi|254780696|r 111 ETLIV-NNPFWIRNSPEKIFVTEFSE----LMPPTLISRDITQITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSS 184 (316)
Q Consensus 111 ~~~vi-N~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~ 184 (316)
++.++ -+|..|-.+.|..--.+..+ ..|+=--..+.+++.+|.++.| |+.+.|.|=-.|...-.+ .++.++..
T Consensus 1017 ~~kilGTsP~~ID~AEnR~kFS~~Ld~i~v~Qp~Wkelt~~~eA~~F~~~VgYP~lvRPSYVLSGaAMnv~-~~~~dl~~ 1095 (1435)
T KOG0370 1017 GVKILGTSPEMIDSAENRFKFSRMLDSIGVDQPAWKELTSLEEAKKFAEKVGYPVLVRPSYVLSGAAMNVV-YSESDLKS 1095 (1435)
T ss_pred CCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHCCCCEEECCCCEECCHHHHHH-HCHHHHHH
T ss_conf 88675488576111456778999887727886102332268899999986599668511013310155521-04788999
Q ss_pred HHHHHHHHCC-CCCCEEECCCCCCCCCEEEEEECCEEEE-EEEEECCCCCCCCCCCCCCCE---EEEECCHH----HHHH
Q ss_conf 9999984001-3340021053445682699998998863-212204568600000014731---11007789----9999
Q gi|254780696|r 185 LIEMLFEKYP-EPLMIQSYLPQIRDGDKRILLLNGKPVG-AVNRIPSEVDNRSNIHAGGKA---ELTKLTKI----DLDI 255 (316)
Q Consensus 185 ~~e~~~~~~~-~~ii~Qefi~~~~~gD~Rv~vi~g~~v~-a~~R~~~~~~~r~Nl~~Gg~~---~~~~lt~~----~~~i 255 (316)
.++....-.+ .|+++-+||+++++=|.-..--||+++. |+- .+-++ +-+|.|--- -+.+|+++ .+.+
T Consensus 1096 ~L~~A~~vs~dhPVVisKfie~AkEidvDAVa~~G~~~~haiS-EHvEn---AGVHSGDAtlv~Ppq~l~~~t~~rik~i 1171 (1435)
T KOG0370 1096 YLEQASAVSPDHPVVISKFIEGAKEIDVDAVASDGKVLVHAIS-EHVEN---AGVHSGDATLVLPPQDLSADTLERIKDI 1171 (1435)
T ss_pred HHHHHHHCCCCCCEEHHHHHCCCCEECHHHHCCCCEEEEEEHH-HHHHC---CCCCCCCEEEECCCHHCCHHHHHHHHHH
T ss_conf 9997764087797772775444501031231047818998623-34112---4655786037578112498899999999
Q ss_pred HHHHHHHHHHCCCEEEEEEEE--CC--EEEEEECCCCHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 999999999849879999511--78--7889836883037889975199989999999
Q gi|254780696|r 256 CKRIGESLRERGLFFTGIDVI--GD--YITEINVTSPTCIREIHRNGGENVASLFWDG 309 (316)
Q Consensus 256 ~~~~~~~L~~~gl~~~GiDii--g~--~i~EvNvtsP~g~~~~~~~~~~~i~~~i~d~ 309 (316)
+.++++.|+--|-| -+-+| ++ +|+|-|+-----|.=..+..|.|+-+.-.+.
T Consensus 1172 ~~ki~~a~~itGPf--N~Q~i~k~n~lkVIECN~RaSRSFPFvSKtlgvdfi~~At~~ 1227 (1435)
T KOG0370 1172 AAKVAKALKITGPF--NMQIIAKDNELKVIECNVRASRSFPFVSKTLGVDFIALATRA 1227 (1435)
T ss_pred HHHHHHHHCCCCCC--EEEEEECCCEEEEEEEEEEEECCCCCEEHHCCCHHHHHHHHH
T ss_conf 99998886166874--379995498078999640343366630010583199998899
No 76
>KOG0237 consensus
Probab=97.16 E-value=0.017 Score=36.70 Aligned_cols=201 Identities=17% Similarity=0.224 Sum_probs=118.5
Q ss_pred HHHHHCCCCEEEC-CHHHHHHCCCHHHHHHHHH--HCCCC-E-EECCHHHHHHHHHHH--HHHHHHCCCCCCCCCEEEEC
Q ss_conf 9986235850411-7488752565034334543--04431-0-003724556888852--14331116885434468744
Q gi|254780696|r 104 LLEKINPETLIVN-NPFWIRNSPEKIFVTEFSE--LMPPT-L-ISRDITQITRFYLEM--KDIIIKPLYGNGGTGVFRIT 176 (316)
Q Consensus 104 ~Le~~~~~~~viN-~p~~i~~~~eKl~~~~~~~--~~P~T-~-vt~~~~~~~~f~~~~--~~vViKPl~g~~G~gV~~i~ 176 (316)
.|..+ +..++- +.++-+.-..|-|+-+|-+ -||-. + ..++++++..|++.+ ..+|+|--.-..|+||..-.
T Consensus 87 ~l~~~--gi~~FGPs~~aAqlE~sK~fsK~fm~r~~IPTA~y~~ft~~e~a~sfi~~~~~~~~ViKAdGLAAGKGViv~~ 164 (788)
T KOG0237 87 VLRSA--GIPCFGPSKQAAQLEASKNFSKDFMHRHNIPTAKYKTFTDPEEAKSFIQSATDKALVIKADGLAAGKGVIVAK 164 (788)
T ss_pred HHHCC--CCCEECCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEC
T ss_conf 66405--8510174377777664178899889863998320264078799899998489856489605524577157405
Q ss_pred CCCCCHHHHHHHHHH----HCCCCCCEEECCCCCCCCCEEEEEE-CCEEEEEEE------EECCCCCCCCCCCCCCCEEE
Q ss_conf 887115889999984----0013340021053445682699998-998863212------20456860000001473111
Q gi|254780696|r 177 LGDRNFSSLIEMLFE----KYPEPLMIQSYLPQIRDGDKRILLL-NGKPVGAVN------RIPSEVDNRSNIHAGGKAEL 245 (316)
Q Consensus 177 ~~~~~~~~~~e~~~~----~~~~~ii~Qefi~~~~~gD~Rv~vi-~g~~v~a~~------R~~~~~~~r~Nl~~Gg~~~~ 245 (316)
..++.+.++-+.+.. ...+.+++.|+++ +-++.++-+ ||+-+..|. |. -+||---|.--+|-+.+
T Consensus 165 ~~~EA~eAv~sIl~~~~fg~AG~tvViEE~LE---GeEvS~laftDG~s~~~mp~aQDHKRl-~dgD~GpNTGgmGaY~p 240 (788)
T KOG0237 165 SKEEAFEAVDSILVKKVFGSAGKTVVIEELLE---GEEVSFLAFTDGYSVRPLPPAQDHKRL-GDGDTGPNTGGMGAYAP 240 (788)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCC---CCEEEEEEEECCCCCCCCCCCCCHHHH-CCCCCCCCCCCCCCCCC
T ss_conf 47999999999985444135664586112307---625789998557302338851002553-07899998888655654
Q ss_pred EEC-CHHH-----HHHHHHHHHHHHHCCCEEEEEEEE-------CCEEEEEECC--CCHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 007-7899-----999999999999849879999511-------7878898368--830378899751999899999999
Q gi|254780696|r 246 TKL-TKID-----LDICKRIGESLRERGLFFTGIDVI-------GDYITEINVT--SPTCIREIHRNGGENVASLFWDGI 310 (316)
Q Consensus 246 ~~l-t~~~-----~~i~~~~~~~L~~~gl~~~GiDii-------g~~i~EvNvt--sP~g~~~~~~~~~~~i~~~i~d~i 310 (316)
+++ +++. ..|.+...+-|.+.|+.|+||=+- |++|+|.|+- -|- -+-+-.+..-|+++.|.-+.
T Consensus 241 aPv~s~~ll~~v~~~I~~~Tv~Gm~~eg~~y~GVLfaGlMl~k~~P~vLEfN~RFGDPE-tQv~l~lLesDL~evi~a~~ 319 (788)
T KOG0237 241 APVASPKLLDTVQSTIIEPTVDGMAEEGIPYVGVLFAGLMLTKDGPKVLEFNVRFGDPE-TQVLLPLLESDLAEVILACC 319 (788)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCEEEEECCCCCCH-HHHHHHHHHHHHHHHHHHHH
T ss_conf 77569899999998876676657876399625687654688359960799840138920-65659878767999999986
Q ss_pred H
Q ss_conf 8
Q gi|254780696|r 311 E 311 (316)
Q Consensus 311 e 311 (316)
+
T Consensus 320 ~ 320 (788)
T KOG0237 320 N 320 (788)
T ss_pred H
T ss_conf 1
No 77
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase; InterPro: IPR004549 This family represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase (6.4.1.2 from EC) is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase (6.3.4.14 from EC), and two subunits of carboxyl transferase in a 2:2 complex. In the first step of long-chain fatty acid synthesis, biotin carboxylase catalyses the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-coA. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase). In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.; GO: 0016874 ligase activity.
Probab=96.74 E-value=0.0031 Score=41.63 Aligned_cols=181 Identities=23% Similarity=0.312 Sum_probs=113.3
Q ss_pred HHHHCC-CC-EEECCHHHHHHCCCHHHHHHHHH-----HCCCC-E-EECCHHHHHHHHHHHH-HHHHHCCCCCCCCCEEE
Q ss_conf 986235-85-04117488752565034334543-----04431-0-0037245568888521-43311168854344687
Q gi|254780696|r 105 LEKINP-ET-LIVNNPFWIRNSPEKIFVTEFSE-----LMPPT-L-ISRDITQITRFYLEMK-DIIIKPLYGNGGTGVFR 174 (316)
Q Consensus 105 Le~~~~-~~-~viN~p~~i~~~~eKl~~~~~~~-----~~P~T-~-vt~~~~~~~~f~~~~~-~vViKPl~g~~G~gV~~ 174 (316)
-|.+++ +. +|==+|++||.-.||-.+-+.-+ .+|=+ = +..|.++..+..++-| |||+|=..|-||+|+-.
T Consensus 92 Ae~c~~~g~~FIGP~pe~Ir~MGDK~~A~~~mKkaGVP~VPGS~GP~~~~~~e~~~~A~~IGyPv~IKA~AGGGGRGmR~ 171 (451)
T TIGR00514 92 AEICEDHGITFIGPSPEAIRLMGDKVTAKETMKKAGVPVVPGSDGPLVEDEEEAVRIAKEIGYPVIIKATAGGGGRGMRV 171 (451)
T ss_pred HHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCEEEE
T ss_conf 88987388266678712011268868999999748876623888863102788999997478968999625899722588
Q ss_pred ECCCCCCHHHHH-----HHHHHHCCCCCCEEECCCCCCCCCEEEEEECC---EEE------EEEEEECCCCCCCCCCCCC
Q ss_conf 448871158899-----99984001334002105344568269999899---886------3212204568600000014
Q gi|254780696|r 175 ITLGDRNFSSLI-----EMLFEKYPEPLMIQSYLPQIRDGDKRILLLNG---KPV------GAVNRIPSEVDNRSNIHAG 240 (316)
Q Consensus 175 i~~~~~~~~~~~-----e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~g---~~v------~a~~R~~~~~~~r~Nl~~G 240 (316)
+...| .+...+ |.-..-.+.-+++.+||++..+ +=+=|+.+ .+| |+|-|..++ .. -
T Consensus 172 vR~~~-El~~~~~~a~~EA~AAF~N~~VYiEKfienPRH--~E~QVLAD~~GN~vyLgERDCSiQRR~QK--ll-----E 241 (451)
T TIGR00514 172 VREED-ELVKLIKAARAEAAAAFNNDGVYIEKFIENPRH--VEIQVLADKYGNVVYLGERDCSIQRRNQK--LL-----E 241 (451)
T ss_pred ECCHH-HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCE--EEEEEEECCCCCEEEECCCCCCHHCCCCC--EE-----E
T ss_conf 62868-999999999999974028796278633369940--79998751788878971214620004654--46-----5
Q ss_pred CCEEEEECCHHHHH----HHHHHHHHHHHCCCEEEE---EEEE----CC--EEEEEECCCCHHHH-H---HHHHCCCCHH
Q ss_conf 73111007789999----999999999984987999---9511----78--78898368830378-8---9975199989
Q gi|254780696|r 241 GKAELTKLTKIDLD----ICKRIGESLRERGLFFTG---IDVI----GD--YITEINVTSPTCIR-E---IHRNGGENVA 303 (316)
Q Consensus 241 g~~~~~~lt~~~~~----i~~~~~~~L~~~gl~~~G---iDii----g~--~i~EvNvtsP~g~~-~---~~~~~~~~i~ 303 (316)
-.+.| -||++.|+ .|.++|... | |.| |-+| |. |.+|.| |= +| | =|..||+|+-
T Consensus 242 EaPsP-~Lt~ElR~~~G~~Av~aA~~i---G--Y~GaGTvEFLld~~~~rFYFmEMN-TR---IQVEHPVTEmvtGvDL~ 311 (451)
T TIGR00514 242 EAPSP-ALTSELREKMGDAAVKAAKSI---G--YTGAGTVEFLLDKNGQRFYFMEMN-TR---IQVEHPVTEMVTGVDLI 311 (451)
T ss_pred ECCCC-CCCHHHHHHHHHHHHHHHHHC---C--CEECCEEEEEEECCCCEEEEEEEC-CE---EEEEECCEEEEECHHHH
T ss_conf 46888-778899999989999999864---9--800351688862588735776517-60---21110320146002578
Q ss_pred HH
Q ss_conf 99
Q gi|254780696|r 304 SL 305 (316)
Q Consensus 304 ~~ 305 (316)
+.
T Consensus 312 ke 313 (451)
T TIGR00514 312 KE 313 (451)
T ss_pred HH
T ss_conf 88
No 78
>PRK06524 biotin carboxylase-like protein; Validated
Probab=96.70 E-value=0.01 Score=38.18 Aligned_cols=159 Identities=19% Similarity=0.397 Sum_probs=98.1
Q ss_pred CCEEECCHHHHHH-CCCHHHHHHHHH-----HCCCCEE-ECCHHHHHHHHHHHH---HHHHHCCCCCCCCCEEEECCCCC
Q ss_conf 8504117488752-565034334543-----0443100-037245568888521---43311168854344687448871
Q gi|254780696|r 111 ETLIVNNPFWIRN-SPEKIFVTEFSE-----LMPPTLI-SRDITQITRFYLEMK---DIIIKPLYGNGGTGVFRITLGDR 180 (316)
Q Consensus 111 ~~~viN~p~~i~~-~~eKl~~~~~~~-----~~P~T~v-t~~~~~~~~f~~~~~---~vViKPl~g~~G~gV~~i~~~~~ 180 (316)
|.-|+=.|..+|+ +.+|+-+.++.+ ..|-++. ..+.+++.+..++.| ++|+-..+|-.|...|+|. ++.
T Consensus 112 Gl~v~~P~a~LR~~ldsKi~t~Rlgn~AGvpsVPnvl~~v~sY~~L~~~~~~aglG~DLVvQt~~GdsG~tTFFi~-~e~ 190 (480)
T PRK06524 112 GLEVMHPPAELRHRLDSKIVMTRLADEAGVPSVPHVIGRVDSYEELSALAHEAGLGDDLVVQTAYGDAGSTTFFVR-GER 190 (480)
T ss_pred CCCEECCHHHHHHHHCCEEEEEEECCCCCCCCCCCEEECCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCEEEEEE-CHH
T ss_conf 9727558299997743611467521115887676300035669999999887088863588425678874169972-565
Q ss_pred CHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEE------EEECCEEEE-EEE-------EECCCCCCCCCCCCCCCEEEE
Q ss_conf 158899999840013340021053445682699------998998863-212-------204568600000014731110
Q gi|254780696|r 181 NFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRI------LLLNGKPVG-AVN-------RIPSEVDNRSNIHAGGKAELT 246 (316)
Q Consensus 181 ~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv------~vi~g~~v~-a~~-------R~~~~~~~r~Nl~~Gg~~~~~ 246 (316)
++.. +...++-|.=|+-.+.=+-|- .--.|.++| .|. =.|-+|-|-.| ...+.
T Consensus 191 D~~k--------~a~eIvge~eiKiMKRI~~~~~aiEac~T~~GTivgP~MTelvGf~ELTPykGgWCGN-----ei~~~ 257 (480)
T PRK06524 191 DWDK--------YAGEIVGQPEIKVMKRIRNVEVCIEACVTRHGTVIGPAMTSLVGYPELTPYRGAWCGN-----DIWRG 257 (480)
T ss_pred HHHH--------HHHHHHCCCHHHHHHHHCCCCCCEEEEECCCCEEECHHHHHHCCCCCCCCCCCCCCCC-----CCCCC
T ss_conf 6767--------5776406631534434247641111220038736324677542841167667764355-----45502
Q ss_pred ECCHHH----HHHHHHHHHHHHHCCC--EEEEEEEE-----CC-EEEEEE
Q ss_conf 077899----9999999999998498--79999511-----78-788983
Q gi|254780696|r 247 KLTKID----LDICKRIGESLRERGL--FFTGIDVI-----GD-YITEIN 284 (316)
Q Consensus 247 ~lt~~~----~~i~~~~~~~L~~~gl--~~~GiDii-----g~-~i~EvN 284 (316)
.+++.. +++..+.+..|.+.|- ||. +|++ ++ |+-|+|
T Consensus 258 ~~~p~~r~kare~~~k~Gd~L~~eGYrGyFe-vDfLiD~dt~evyLGElN 306 (480)
T PRK06524 258 ALPPAQTRAAREMVAKLGDVLSREGYRGYFE-VDLLHDLDADELYLGEVN 306 (480)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE-EEEEEECCCCCEEEECCC
T ss_conf 2891366999999999879987445663589-999885577847540367
No 79
>KOG1057 consensus
Probab=96.44 E-value=0.0027 Score=42.04 Aligned_cols=88 Identities=17% Similarity=0.275 Sum_probs=64.0
Q ss_pred CCCEEECCCCCCCCCEEEEEECCEEEEEEEEECCCCCC--CCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 34002105344568269999899886321220456860--0000014731110077899999999999999849879999
Q gi|254780696|r 196 PLMIQSYLPQIRDGDKRILLLNGKPVGAVNRIPSEVDN--RSNIHAGGKAELTKLTKIDLDICKRIGESLRERGLFFTGI 273 (316)
Q Consensus 196 ~ii~Qefi~~~~~gD~Rv~vi~g~~v~a~~R~~~~~~~--r~Nl~~Gg~~~~~~lt~~~~~i~~~~~~~L~~~gl~~~Gi 273 (316)
.+|-.||.|.- +-|++|.-||-...+|-.|.++..|- +-|-+---.--++.||++|+.+|.+++-++ +--.||.
T Consensus 230 SyIYEeFMptd-gtDVKvYTVGp~YaHAEaRKSPvvDGkV~Rns~GKEvRYpv~Ls~~EK~iA~KVciAF---~Q~VCGF 305 (1018)
T KOG1057 230 SYIYEEFMPTD-GTDVKVYTVGPDYAHAEARKSPVVDGKVERNSDGKEVRYPVILNSSEKQIARKVCIAF---KQTVCGF 305 (1018)
T ss_pred CEEHHHHCCCC-CCCCEEEEECCCHHHHHHCCCCCCCCEEEECCCCCEEECEEECCHHHHHHHHHHHHHC---CCCCCCH
T ss_conf 31101105789-8620378607302336650386536435315887614222533826677776888642---5666656
Q ss_pred EEE---C-CEEEEEECCC
Q ss_conf 511---7-8788983688
Q gi|254780696|r 274 DVI---G-DYITEINVTS 287 (316)
Q Consensus 274 Dii---g-~~i~EvNvts 287 (316)
|++ | .||+.||-.|
T Consensus 306 DLLRa~G~SYVcDVNGfS 323 (1018)
T KOG1057 306 DLLRANGKSYVCDVNGFS 323 (1018)
T ss_pred HHHHCCCCEEEEECCCEE
T ss_conf 776237816999416602
No 80
>KOG2156 consensus
Probab=96.34 E-value=0.0023 Score=42.51 Aligned_cols=71 Identities=24% Similarity=0.433 Sum_probs=50.1
Q ss_pred HCCCCEE-ECCHHHHHHHHHHH--HHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCC---CCC
Q ss_conf 0443100-03724556888852--14331116885434468744887115889999984001334002105344---568
Q gi|254780696|r 136 LMPPTLI-SRDITQITRFYLEM--KDIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQI---RDG 209 (316)
Q Consensus 136 ~~P~T~v-t~~~~~~~~f~~~~--~~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~---~~g 209 (316)
++|.|++ ..|.++++...+++ .-+|+||..+..|.||-.+.+ +..+. ...|+++|+||+.. .++
T Consensus 282 fmPrtyilP~d~e~lrk~w~~nasr~wIVkppasaRg~gIrv~~k--------w~q~p--k~rpLvvQ~yieRP~ling~ 351 (662)
T KOG2156 282 FMPRTYILPADREELRKYWEKNASRLWIVKPPASARGIGIRVINK--------WSQFP--KDRPLVVQKYIERPLLINGS 351 (662)
T ss_pred CCCEEEECCCCHHHHHHHHHHCCCCCEEECCCCCCCCCCEEECCC--------HHHCC--CCCCHHHHHHHHCCEEECCC
T ss_conf 664033564009999998764744207755860026763574253--------64488--76648999976343552376
Q ss_pred --CEEEEEE
Q ss_conf --2699998
Q gi|254780696|r 210 --DKRILLL 216 (316)
Q Consensus 210 --D~Rv~vi 216 (316)
|+|+.|+
T Consensus 352 KFDlrlYv~ 360 (662)
T KOG2156 352 KFDLRLYVV 360 (662)
T ss_pred CEEEEEEEE
T ss_conf 214799999
No 81
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=95.70 E-value=0.028 Score=35.37 Aligned_cols=184 Identities=16% Similarity=0.193 Sum_probs=100.6
Q ss_pred CCCHHHHHHHHHHCCCEEEEEE-HHHEEEEC-CE-EEEEEEEEEEECCCCCEEEECCCCCC-------CHHHCCEEEEEC
Q ss_conf 6467999999998898899995-41248999-89-99999999980777412650464435-------210063668832
Q gi|254780696|r 21 EDSTFAIALEAQVRGYQIFHYT-PDQLYMRD-SK-IYANTQPLSLDEKKEQYYSLGEEKII-------DLSQMDVILIRQ 90 (316)
Q Consensus 21 ~DTT~~Lm~eAq~RGheV~~~~-~~dL~~~~-g~-v~A~~~~i~i~~~~~~~f~~~~~~~~-------~L~~fD~i~iR~ 90 (316)
..+++.|+..|.+-|++.-++. ..+|.+.. |. +-+..+++... |+.=..+.. .-.++-..-+|+
T Consensus 393 ~y~alymq~~a~qAG~~~kii~~id~l~~d~~G~~vD~d~~~I~~V------wKtwpWEt~l~qlr~e~~~~~~~~~~~~ 466 (619)
T PRK10507 393 NYHAQFMQQALHQAGFETKILRGLDELRWDAAGQLIDGDGRLVNCV------WKTWAWETALDQIREVSEREFAAVPIRT 466 (619)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEECCCCCEEEEE------EECCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 5689999999997686666678641330447775775888673101------0005088899999865325554054324
Q ss_pred CCCCCH-HHHHHHHHHHHHCCCCEEECCHHHHHHCCCH-HHHH---HHHH---HCCCCEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 886224-7999999998623585041174887525650-3433---4543---044310003724556888852143311
Q gi|254780696|r 91 DPPFNM-HYITSTYLLEKINPETLIVNNPFWIRNSPEK-IFVT---EFSE---LMPPTLISRDITQITRFYLEMKDIIIK 162 (316)
Q Consensus 91 dPp~d~-~yi~~~~~Le~~~~~~~viN~p~~i~~~~eK-l~~~---~~~~---~~P~T~vt~~~~~~~~f~~~~~~vViK 162 (316)
+.|.+. +.+. +|.. .++.|+..+ .-....|| +.++ .||. +.| +.+..+.+ + .. ...|-|
T Consensus 467 ~~~~~~~rLiD---vLl~--~~v~v~EPl-WK~IlSNKAILPlLW~~fP~HPnLL~-A~F~~~~~-l----~~-~gyv~K 533 (619)
T PRK10507 467 GHPQNEVRLID---VLLR--PEVLVFEPL-WTVIPGNKAILPILWSLFPHHRYLLD-TDFTVNDE-L----VK-TGYAVK 533 (619)
T ss_pred CCCCCCCHHHH---HHCC--CCCEEECCC-HHHHCCCCHHHHHHHHHCCCCCCCCC-HHCCCCCC-C----CC-CCCEEC
T ss_conf 67667621434---4336--772574431-34242552488999986799810050-00367722-1----34-884415
Q ss_pred CCCCCCCCCEEEECCCCCCHHHHHH-HHHHHCCCCCCEEECCCCCCCCCEEE----EEECCEEEEEEEEE
Q ss_conf 1688543446874488711588999-99840013340021053445682699----99899886321220
Q gi|254780696|r 163 PLYGNGGTGVFRITLGDRNFSSLIE-MLFEKYPEPLMIQSYLPQIRDGDKRI----LLLNGKPVGAVNRI 227 (316)
Q Consensus 163 Pl~g~~G~gV~~i~~~~~~~~~~~e-~~~~~~~~~ii~Qefi~~~~~gD~Rv----~vi~g~~v~a~~R~ 227 (316)
|++|-.|..|..+...+. +++ +.-..+....|.|+|.+-..-++.++ .+|+|++-|...|.
T Consensus 534 Pi~gReGaNI~l~~~~~~----~~~~t~G~y~~~~~IyQ~~~~LP~fd~~y~~IgsWvVgd~~aGi~iRE 599 (619)
T PRK10507 534 PIAGRCGSNIDLVSHQEE----LLDKTSGKFAEQKNIYQQLWCLPKVDGKYIQVCTFTVGGNYGGTCLRG 599 (619)
T ss_pred CCCCCCCCCEEEECCCCC----EEECCCCCCCCCCEEEEEECCCCCCCCEEEEEEEEEECCEECCEEEEC
T ss_conf 654666676799738873----541368876777706788325865488268898999898805038941
No 82
>pfam08886 GshA Glutamate-cysteine ligase. This is a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=94.16 E-value=0.13 Score=30.95 Aligned_cols=88 Identities=19% Similarity=0.275 Sum_probs=60.3
Q ss_pred HHHHCCCCCCCCCEEEECCCCCCHHH----HH-HHHHHHC---CCCCCEEECCCCCC--CC---CEEEEEECCEEEEEEE
Q ss_conf 33111688543446874488711588----99-9998400---13340021053445--68---2699998998863212
Q gi|254780696|r 159 IIIKPLYGNGGTGVFRITLGDRNFSS----LI-EMLFEKY---PEPLMIQSYLPQIR--DG---DKRILLLNGKPVGAVN 225 (316)
Q Consensus 159 vViKPl~g~~G~gV~~i~~~~~~~~~----~~-e~~~~~~---~~~ii~Qefi~~~~--~g---D~Rv~vi~g~~v~a~~ 225 (316)
|++|-=.|+.|-||..+...++ +.. .. .+...++ -..+++||-++... ++ +=-|.++|+.++|...
T Consensus 263 V~VKad~GTYGMGIm~v~~~~e-i~~Lnrk~RnKM~~~K~g~~v~~viiQEGV~T~e~~~~avaEPVVY~id~~vvggFY 341 (404)
T pfam08886 263 VFVKADAGTYGMGIMTVRSGDE-VLALNRKQRNKMSVIKEGLEVSEVIIQEGVYTFERFNDAVAEPVVYMIDRYVVGGFY 341 (404)
T ss_pred EEEECCCCCCCCEEEEECCHHH-HHHHCHHHHHHHHHCCCCCCCCEEEEECCCCEEEEECCCCCCCEEEEECCEEEEEEE
T ss_conf 9996789987733799559999-988677777656640488752007896686323324895357569998888757889
Q ss_pred EECCCCCCCCCCCC-CCCEEEEE
Q ss_conf 20456860000001-47311100
Q gi|254780696|r 226 RIPSEVDNRSNIHA-GGKAELTK 247 (316)
Q Consensus 226 R~~~~~~~r~Nl~~-Gg~~~~~~ 247 (316)
|+.++-+-..||-. |...++..
T Consensus 342 Rvh~~r~~~eNLNspGm~F~pl~ 364 (404)
T pfam08886 342 RVHTERGRDENLNAPGMHFVPLA 364 (404)
T ss_pred EECCCCCCCCCCCCCCCEEEECC
T ss_conf 97688887567799998656355
No 83
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2; InterPro: IPR005862 The formation of isosinate, a precursor of adenylate and guanylate, from 5-phosphoribosyl 1-pyrophosphate in the de novo purine biosynthesis pathway is basically composed of 10 steps of reactions . Phosphoribosylglycinamide formyltransferase 2 (2.1.2 from EC) is an alternative enzyme to phosphoribosylglycinamide formyltransferase that catalyzes the third step in the de novo purine biosynthesis pathway. ; GO: 0016742 hydroxymethyl- formyl- and related transferase activity, 0009113 purine base biosynthetic process.
Probab=94.13 E-value=0.53 Score=26.95 Aligned_cols=234 Identities=18% Similarity=0.293 Sum_probs=121.2
Q ss_pred HHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHHHCCEEEEECCCCCC---HHHHH
Q ss_conf 799999999889889999541248999899999999998077741265046443521006366883288622---47999
Q gi|254780696|r 24 TFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQMDVILIRQDPPFN---MHYIT 100 (316)
Q Consensus 24 T~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~~fD~i~iR~dPp~d---~~yi~ 100 (316)
.-.+..++++.|.++..++--.- +.+ ..+.+.. .... ..+-+.+..++-|..|.+- ...+.
T Consensus 11 g~~~~~~~~~lg~~~~~~d~~~~--------~p~--~~~~~~~-~~~~-----~~d~~~~~~~~~~~~p~~~~p~~~~~~ 74 (407)
T TIGR01142 11 GKEVAIEAQRLGVEVIAVDRYAD--------APA--LQVAHRS-YVID-----LLDGDALRAVIEREKPDYIVPEIEAIA 74 (407)
T ss_pred CHHHHHHHHHCCCEEEEECCCCC--------CCH--HHHHHHH-HHEE-----CCCHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 31444445434712687335457--------621--3332111-1000-----026789999987506741000244554
Q ss_pred HHHHHHHHCCC---CEEECCHHHHHHCCCH--HHHHHHHHH---CCCCEEECCHHHHHHHHHHHH-HHHHHCCCCCCCCC
Q ss_conf 99999862358---5041174887525650--343345430---443100037245568888521-43311168854344
Q gi|254780696|r 101 STYLLEKINPE---TLIVNNPFWIRNSPEK--IFVTEFSEL---MPPTLISRDITQITRFYLEMK-DIIIKPLYGNGGTG 171 (316)
Q Consensus 101 ~~~~Le~~~~~---~~viN~p~~i~~~~eK--l~~~~~~~~---~P~T~vt~~~~~~~~f~~~~~-~vViKPl~g~~G~g 171 (316)
.-.+++.-..+ ..++-+..+.+...++ +..+...++ +.+-....+.+++....+..| |+++||+.++.|+|
T Consensus 75 ~~~l~~~~~~gg~c~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~p~~~~p~~~~~g~g 154 (407)
T TIGR01142 75 TDALLELEAEGGECYTVVPTARATKLTLNREGLRRLAAEELGLPTAPYEFADSLEELREAVEKIGFPCVVKPVLSSSGKG 154 (407)
T ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEHHHHCCCCCC
T ss_conf 66677665248824664035202221210567787767763254220011101788999998607750001221146665
Q ss_pred EEEECCCCCCHHHHHHHHH-----HHC---CCCCCEEECCCCCCCCCEEEEE---ECC--EEE--E-EEEEECCCCCCCC
Q ss_conf 6874488711588999998-----400---1334002105344568269999---899--886--3-2122045686000
Q gi|254780696|r 172 VFRITLGDRNFSSLIEMLF-----EKY---PEPLMIQSYLPQIRDGDKRILL---LNG--KPV--G-AVNRIPSEVDNRS 235 (316)
Q Consensus 172 V~~i~~~~~~~~~~~e~~~-----~~~---~~~ii~Qefi~~~~~gD~Rv~v---i~g--~~v--~-a~~R~~~~~~~r~ 235 (316)
-..+. ...++...++... ..+ ...+++++|++ .+-++..+. .+| ... + .+......||++.
T Consensus 155 ~~~~~-~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~p~g~~~~~g~~~~ 231 (407)
T TIGR01142 155 QSVVR-GPEDLEKAWEYAKGHQVQEGGRGGAGRVIVEEFID--FDYEITLLTVRAVDGNGPLTTFCAPIGHRQEDGDYHE 231 (407)
T ss_pred CEEEC-CHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCC--CHHHHHHHEEEECCCCCCEEEECCCCCCCCCCCCCHH
T ss_conf 30004-73456788766504310113455556245520013--1021100000002777750110132243001554000
Q ss_pred CCCCCCCEEEEECCHHH----HHHHHHHHHHHHHCCCEEEEEEEE--CC--EEEEEE
Q ss_conf 00014731110077899----999999999999849879999511--78--788983
Q gi|254780696|r 236 NIHAGGKAELTKLTKID----LDICKRIGESLRERGLFFTGIDVI--GD--YITEIN 284 (316)
Q Consensus 236 Nl~~Gg~~~~~~lt~~~----~~i~~~~~~~L~~~gl~~~GiDii--g~--~i~EvN 284 (316)
. -.+..++... ..++.++...|-..|++ |+++. |+ |..|+.
T Consensus 232 ~------w~p~~~~~~~~~~~~~~~~~~~~~lgg~g~~--g~~~~~~g~~~~~~~~~ 280 (407)
T TIGR01142 232 S------WQPQELSEKALEEAKRIAKRVTDALGGYGLF--GVELFVKGDEVWFSEVS 280 (407)
T ss_pred C------CCCHHHHHHHHHHHHHHHHHHHHHHCCCCEE--EEEEEECCCEEEEECCC
T ss_conf 1------4621221788999999998888763466400--14456516613542046
No 84
>KOG2158 consensus
Probab=91.82 E-value=0.15 Score=30.48 Aligned_cols=95 Identities=24% Similarity=0.309 Sum_probs=53.7
Q ss_pred CEEECCHHHHHHCCCHHHHHH----HHH---HCCCCEEE-CCHHHHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCH
Q ss_conf 504117488752565034334----543---04431000-37245568888521-4331116885434468744887115
Q gi|254780696|r 112 TLIVNNPFWIRNSPEKIFVTE----FSE---LMPPTLIS-RDITQITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNF 182 (316)
Q Consensus 112 ~~viN~p~~i~~~~eKl~~~~----~~~---~~P~T~vt-~~~~~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~ 182 (316)
..+-|.|.-.+.+.+=|.... ||+ +-|.|+.. ....++.++.+.++ +.|+||=.|.+|.||+.++ |.+.
T Consensus 173 qrvn~fPgm~e~~kd~Lsl~~mqkifpeey~fyp~sw~lPa~l~df~a~~~~~KrtfivkpDsgaqg~giylis--Dir~ 250 (565)
T KOG2158 173 QRENNFPGMREKEKDILDLLEMQKIFPEEYMFYPTSWRLPAPLCDFPASTEIMKRTFIVKPDSGAQGSGIYLIS--DIRE 250 (565)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCEEEEC--HHHH
T ss_conf 45535850788999887399887339487567775333765777779999974065787888887776405520--2222
Q ss_pred HHHHHHHHHHCCCCCCEEECCCC---CCCC---CEEEEEE
Q ss_conf 88999998400133400210534---4568---2699998
Q gi|254780696|r 183 SSLIEMLFEKYPEPLMIQSYLPQ---IRDG---DKRILLL 216 (316)
Q Consensus 183 ~~~~e~~~~~~~~~ii~Qefi~~---~~~g---D~Rv~vi 216 (316)
..-.+ ..++|+||-. ++++ |.|+..+
T Consensus 251 ~g~~Q--------~~~vQeyV~~pLli~dkyKfd~rvy~l 282 (565)
T KOG2158 251 KGEYQ--------NKKVQEYVTYPLLISDKYKFDQRVYSL 282 (565)
T ss_pred HHHHH--------HHHHHHHHCCCCCCCCCCEEEEEEEEE
T ss_conf 10778--------788888832433136652146554111
No 85
>KOG0368 consensus
Probab=91.62 E-value=0.73 Score=26.05 Aligned_cols=181 Identities=19% Similarity=0.317 Sum_probs=92.3
Q ss_pred CCCEEECCH-HHHHHCCCHHHHHHHHH----H----------------------CCCCE----EECCHHHHHHHHHHHH-
Q ss_conf 585041174-88752565034334543----0----------------------44310----0037245568888521-
Q gi|254780696|r 110 PETLIVNNP-FWIRNSPEKIFVTEFSE----L----------------------MPPTL----ISRDITQITRFYLEMK- 157 (316)
Q Consensus 110 ~~~~viN~p-~~i~~~~eKl~~~~~~~----~----------------------~P~T~----vt~~~~~~~~f~~~~~- 157 (316)
+++.+|-.| ++++...||+.++=.+. + .|+-+ -.++.++..+..++.|
T Consensus 161 ~~IiFiGPP~~aM~sLGDKI~STIvAQsa~vPtlpWSGS~v~~~~~~~~~~~v~Vpedly~Kacv~~~eegLeaae~IGf 240 (2196)
T KOG0368 161 NGIIFIGPPASAMRALGDKIASTIIAQSAGVPTLPWSGSGVKVEHIEDKTNLVSVPEDLYEKACVRNVEEGLEAAEKIGF 240 (2196)
T ss_pred CCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCEEECCHHHHHHHHCCCHHHHHHHHHHCCC
T ss_conf 79289889467777632168778988754997214468863144550567627357898653430888899999986298
Q ss_pred HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHC-CCCCCEEECCCCCCCCCEEEEEECCE---EE------EEEEEE
Q ss_conf 433111688543446874488711588999998400-13340021053445682699998998---86------321220
Q gi|254780696|r 158 DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKY-PEPLMIQSYLPQIRDGDKRILLLNGK---PV------GAVNRI 227 (316)
Q Consensus 158 ~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~-~~~ii~Qefi~~~~~gD~Rv~vi~g~---~v------~a~~R~ 227 (316)
|+.+|-..|.||+||-+++. +.++..+++.....- ..|+.+-+....+. -+-|-++.++ ++ +++-|.
T Consensus 241 PvMIKASEGGGGKGIRkv~n-~ddF~~lf~qv~~EvPGSPIFlMK~a~~AR--HlEVQlLaDqYGn~IsLfgRDCSiQRR 317 (2196)
T KOG0368 241 PVMIKASEGGGGKGIRKVEN-EDDFKALFKQVQNEVPGSPIFLMKLADQAR--HLEVQLLADQYGNVISLFGRDCSIQRR 317 (2196)
T ss_pred CEEEEECCCCCCCCEEECCC-HHHHHHHHHHHHHHCCCCCEEHHHHCCCCC--EEEEEHHHHHHCCEEEEECCCCHHHHH
T ss_conf 36999545789766130456-678999999998558999555200336754--021002245308787774366237787
Q ss_pred CCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEE-EEEE-----CC-EEEEEE----CCCCHHHHHHHH
Q ss_conf 456860000001473111007789999999999999984987999-9511-----78-788983----688303788997
Q gi|254780696|r 228 PSEVDNRSNIHAGGKAELTKLTKIDLDICKRIGESLRERGLFFTG-IDVI-----GD-YITEIN----VTSPTCIREIHR 296 (316)
Q Consensus 228 ~~~~~~r~Nl~~Gg~~~~~~lt~~~~~i~~~~~~~L~~~gl~~~G-iDii-----g~-~i~EvN----vtsP~g~~~~~~ 296 (316)
.++ ..- -+-++..+-+.-++.++-|.+.++.. |-.=|| |..+ |. |.+|.| |--|| -+-
T Consensus 318 hQK--IIE--EAPatIap~etf~~Me~~AvrLak~V---GYvSAGTVEYLYsp~d~~fyFLELNPRLQVEHP~----TEm 386 (2196)
T KOG0368 318 HQK--IIE--EAPATIAPPETFKKMEQAAVRLAKLV---GYVSAGTVEYLYSPDDGEYYFLELNPRLQVEHPT----TEM 386 (2196)
T ss_pred HHH--HHH--HCCCCCCCHHHHHHHHHHHHHHHHHH---CCEECCEEEEEEECCCCCEEEEECCCCCCCCCCC----HHH
T ss_conf 778--876--18854178899999999999998763---6111336899972589817999627630246775----255
Q ss_pred HCCCCHHH
Q ss_conf 51999899
Q gi|254780696|r 297 NGGENVAS 304 (316)
Q Consensus 297 ~~~~~i~~ 304 (316)
.+++|+.+
T Consensus 387 is~VNlPA 394 (2196)
T KOG0368 387 ISDVNLPA 394 (2196)
T ss_pred HHCCCCCH
T ss_conf 51578608
No 86
>KOG2157 consensus
Probab=90.55 E-value=0.42 Score=27.63 Aligned_cols=80 Identities=19% Similarity=0.328 Sum_probs=48.0
Q ss_pred HHCCCCEEECCHHHHHHHHHH------HHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHH---H-HHHCCCCCCEEECCC
Q ss_conf 304431000372455688885------214331116885434468744887115889999---9-840013340021053
Q gi|254780696|r 135 ELMPPTLISRDITQITRFYLE------MKDIIIKPLYGNGGTGVFRITLGDRNFSSLIEM---L-FEKYPEPLMIQSYLP 204 (316)
Q Consensus 135 ~~~P~T~vt~~~~~~~~f~~~------~~~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~---~-~~~~~~~ii~Qefi~ 204 (316)
+++|-|.+.- .+...+.++ .+..|+||..-+.|+||+.++.. .++.+.... + ........++|.||+
T Consensus 174 d~~~~~~~~~--~~~~~~v~e~~~~~~~~~wIvKP~~~srg~GI~~~~~l-~~l~~~~~~~~~~~s~~~~~~~vv~~yi~ 250 (497)
T KOG2157 174 DYVETTFVLL--DEYKKLVEEYEEDSERSWWIVKPASKSRGRGIFLFNTL-SDLQAIVDSFDSFISENNDEGYVVSAYID 250 (497)
T ss_pred CCCCHHHHHH--HHHHHHHHHHHHCCCCCEEEECCCCCCCCCEEEEECCH-HHHHHHHHCCCCCCCCCCCCCCEEEEECC
T ss_conf 2311354414--57899899987515466689644321016526886235-66565431233323323334424431026
Q ss_pred CC--CCC---CEEEEEEC
Q ss_conf 44--568---26999989
Q gi|254780696|r 205 QI--RDG---DKRILLLN 217 (316)
Q Consensus 205 ~~--~~g---D~Rv~vi~ 217 (316)
.. -+| |+|..|+-
T Consensus 251 ~plli~~~KfDlR~~vlv 268 (497)
T KOG2157 251 RPLLIGGHKFDLRQYVLV 268 (497)
T ss_pred CCCCCCCCEEEEEEEEEE
T ss_conf 730058743300678985
No 87
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=88.92 E-value=0.1 Score=31.59 Aligned_cols=84 Identities=10% Similarity=0.024 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHHH-HHHHHCCCCCCCCCEEEECC---CCCCHHHHHH-HHHHHCCCCCCEEECCCCCCCCCEEEEEECC
Q ss_conf 37245568888521-43311168854344687448---8711588999-9984001334002105344568269999899
Q gi|254780696|r 144 RDITQITRFYLEMK-DIIIKPLYGNGGTGVFRITL---GDRNFSSLIE-MLFEKYPEPLMIQSYLPQIRDGDKRILLLNG 218 (316)
Q Consensus 144 ~~~~~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~---~~~~~~~~~e-~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~g 218 (316)
..-..+..+++..+ |+|.||+.||.|.++-...+ ....+..... .+.......+++++|.+ .-|.|++|.+.
T Consensus 74 gEDg~iqg~le~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~~~~~~~~~~~~~e~~~~---~l~~p~~Vkp~ 150 (317)
T COG1181 74 GEDGTIQGLLELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVALTRDEYSSVIVEEVEE---GLGFPLFVKPA 150 (317)
T ss_pred CCCCHHHHHHHHHCCCEEECCHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHC---CCCCCEEEECC
T ss_conf 887069999997099876076445332350999988998678651235675334520478887741---46887899858
Q ss_pred EEEEEEEEECCC
Q ss_conf 886321220456
Q gi|254780696|r 219 KPVGAVNRIPSE 230 (316)
Q Consensus 219 ~~v~a~~R~~~~ 230 (316)
+..+++-|.|..
T Consensus 151 ~~gSSvg~~~v~ 162 (317)
T COG1181 151 REGSSVGRSPVN 162 (317)
T ss_pred CCEEEEEEEECC
T ss_conf 731136799883
No 88
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=86.98 E-value=1.2 Score=24.69 Aligned_cols=40 Identities=13% Similarity=0.140 Sum_probs=30.7
Q ss_pred CCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHE
Q ss_conf 3318997099888484764679999999988988999954124
Q gi|254780696|r 4 IRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQL 46 (316)
Q Consensus 4 ~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL 46 (316)
+|||+|+.-|.- =..--+++|.+|.++|||+|.|+...+.
T Consensus 1 ~mkil~~~~~~~---Ghv~p~~aL~~eL~~~gheV~~~~~~~~ 40 (406)
T COG1819 1 RMKILFVVCGAY---GHVNPCLALGKELRRRGHEVVFASTGKF 40 (406)
T ss_pred CCEEEEEECCCC---CCHHHHHHHHHHHHHCCCEEEEEECHHH
T ss_conf 957999817764---3226669999999976974999737789
No 89
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=84.49 E-value=1.2 Score=24.68 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=29.4
Q ss_pred CEEEEEECCHHHCCC-----CCCCHHHHHHHHHHCCCEEEEEEHHH
Q ss_conf 318997099888484-----76467999999998898899995412
Q gi|254780696|r 5 RNIAIQMNHISTVKV-----KEDSTFAIALEAQVRGYQIFHYTPDQ 45 (316)
Q Consensus 5 ~kI~fimDpi~~i~~-----~~DTT~~Lm~eAq~RGheV~~~~~~d 45 (316)
|||+++.+...-+=| -.-.+..|+++..+|||+|.++.+.+
T Consensus 1 MkI~~v~~~~~p~pP~~~GG~e~~~~~La~~L~~~Gh~V~v~~~~~ 46 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGD 46 (335)
T ss_pred CEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 9869988840036999989799999999999997699899996289
No 90
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=83.92 E-value=3.7 Score=21.46 Aligned_cols=38 Identities=13% Similarity=0.043 Sum_probs=27.0
Q ss_pred CEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHH
Q ss_conf 3189970998884847646799999999889889999541
Q gi|254780696|r 5 RNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPD 44 (316)
Q Consensus 5 ~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~ 44 (316)
||||++.-|. +-=..-.+..|.++..+|||+|.++...
T Consensus 1 MkI~i~~~P~--~GG~e~~v~~La~~L~~~GHeV~vit~~ 38 (371)
T cd04962 1 MKIGIVCYPT--YGGSGVVATELGKALARRGHEVHFITSS 38 (371)
T ss_pred CEEEEECCCC--CCCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 9799989999--9869999999999999759999999568
No 91
>PRK08605 D-lactate dehydrogenase; Validated
Probab=83.74 E-value=3.7 Score=21.43 Aligned_cols=86 Identities=15% Similarity=0.173 Sum_probs=48.6
Q ss_pred CCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHHHC
Q ss_conf 33189970998884847646799999999889889999541248999899999999998077741265046443521006
Q gi|254780696|r 4 IRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQM 83 (316)
Q Consensus 4 ~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~~f 83 (316)
||||+|. ++.+ |---++=+-+++.|+|+.++. .- + .+...-.+.++
T Consensus 1 m~Ki~~~-----~~~~--~e~~~~~~~~~~~~~ev~~~~-~~------------------------~--~ee~i~~~~~~ 46 (332)
T PRK08605 1 MTKIKLM-----SVRD--EDAPYIKAWAEKHHVEVDLTK-EA------------------------L--TDDNVEEVEGF 46 (332)
T ss_pred CCEEEEE-----ECCH--HHHHHHHHHHHHCCCEEEEEC-CC------------------------C--CHHHHHHHCCC
T ss_conf 9769998-----2766--569999998886590799966-99------------------------9--98999985799
Q ss_pred CEEEEECCCCCCHHHHHHHHH-----------------HHHHC-CCCEEECCHHHHHH
Q ss_conf 366883288622479999999-----------------98623-58504117488752
Q gi|254780696|r 84 DVILIRQDPPFNMHYITSTYL-----------------LEKIN-PETLIVNNPFWIRN 123 (316)
Q Consensus 84 D~i~iR~dPp~d~~yi~~~~~-----------------Le~~~-~~~~viN~p~~i~~ 123 (316)
|++.+|..-++|.+-+..+.- ++.+. .|+.|.|.|.+--+
T Consensus 47 D~i~v~~~~~i~~~vl~~~~~l~iK~I~r~gvG~DnIDl~~a~~~gI~V~n~P~~~~~ 104 (332)
T PRK08605 47 DGLSLSQQIPLSEAIYKLLNELGIKQIAQRSAGFDTYDLELANKYNIIISNVPSYSPE 104 (332)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCHH
T ss_conf 8899970797799999966636977999777217454699999799989959986848
No 92
>TIGR02049 gshA_ferroox glutamate--cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria . It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase..
Probab=82.03 E-value=4.3 Score=20.98 Aligned_cols=144 Identities=17% Similarity=0.224 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHCCCCEEECCHHHHHHHHHH----HH----H-HHHHCCCCCCCCCEEEECCCCC--CHHHH----HHHHH
Q ss_conf 503433454304431000372455688885----21----4-3311168854344687448871--15889----99998
Q gi|254780696|r 126 EKIFVTEFSELMPPTLISRDITQITRFYLE----MK----D-IIIKPLYGNGGTGVFRITLGDR--NFSSL----IEMLF 190 (316)
Q Consensus 126 eKl~~~~~~~~~P~T~vt~~~~~~~~f~~~----~~----~-vViKPl~g~~G~gV~~i~~~~~--~~~~~----~e~~~ 190 (316)
+|.-.+.|.+---.--++...+.+.+.+++ +| | ||+|=-.|+-|=||+-+...++ +++.. +...-
T Consensus 224 ~~c~G~DF~~~~g~~~la~~Vd~vL~~~~~kY~eYgI~~~Pyv~vKAdaGTYGMGimTa~sgeE~l~LNrK~R~kM~k~K 303 (436)
T TIGR02049 224 EKCDGIDFDDREGEDALATAVDQVLSKVQKKYEEYGIHEKPYVIVKADAGTYGMGIMTAKSGEEVLGLNRKERNKMAKVK 303 (436)
T ss_pred HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEECHHHHHCCCCCCCCCCCEEE
T ss_conf 01066335610353689999999999999988755875687589970788745505884263785425300013443112
Q ss_pred HHC-CCCCCEEECCCCCC--C-C---CEEEEEECCEEEEEEEEECCCCCCCCCCCCCC-CEEEEE---------CCHHHH
Q ss_conf 400-13340021053445--6-8---26999989988632122045686000000147-311100---------778999
Q gi|254780696|r 191 EKY-PEPLMIQSYLPQIR--D-G---DKRILLLNGKPVGAVNRIPSEVDNRSNIHAGG-KAELTK---------LTKIDL 253 (316)
Q Consensus 191 ~~~-~~~ii~Qefi~~~~--~-g---D~Rv~vi~g~~v~a~~R~~~~~~~r~Nl~~Gg-~~~~~~---------lt~~~~ 253 (316)
..- -..|++||=++.+. . + +==|.++|..++|.+.|++.+-+.-.||-++| ..++.. -+.+--
T Consensus 304 EGl~vs~ViiQEGV~T~e~~~q~avAEPvvYmig~~v~GgfYRvh~~rg~denLNA~g~~F~pls~~iPtGnGdnsqeaP 383 (436)
T TIGR02049 304 EGLEVSEVIIQEGVYTFEKLNQEAVAEPVVYMIGRTVVGGFYRVHTGRGVDENLNAPGMHFVPLSFSIPTGNGDNSQEAP 383 (436)
T ss_pred CCCCCCCEEEECCCCHHHHCCCCCCCCCEEEECCCEEEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHH
T ss_conf 57010556784784406530454655640233177677557875277887536789886550377666678875420015
Q ss_pred HHHHHHHHHHHHCCCE
Q ss_conf 9999999999984987
Q gi|254780696|r 254 DICKRIGESLRERGLF 269 (316)
Q Consensus 254 ~i~~~~~~~L~~~gl~ 269 (316)
+.|.++-+.....+|-
T Consensus 384 eackrvfeq~~s~~lP 399 (436)
T TIGR02049 384 EACKRVFEQFDSLSLP 399 (436)
T ss_pred HHHHHHHHHHHHCCCC
T ss_conf 8899998877532787
No 93
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=78.75 E-value=5.5 Score=20.29 Aligned_cols=36 Identities=14% Similarity=0.128 Sum_probs=19.6
Q ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf 4731110077899999999999999849879999511
Q gi|254780696|r 240 GGKAELTKLTKIDLDICKRIGESLRERGLFFTGIDVI 276 (316)
Q Consensus 240 Gg~~~~~~lt~~~~~i~~~~~~~L~~~gl~~~GiDii 276 (316)
....-.+.+.+.-..-|.+++..|...|+. +=+|+.
T Consensus 335 ~~~v~v~~~~~~~~~~a~~la~~LR~~g~~-~~~~~~ 370 (429)
T COG0124 335 RVDVYVVPLGEDAEPEALKLAQKLRAAGIS-VEVDYS 370 (429)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHCCCC-EEEEEC
T ss_conf 788899984861599999999999975994-899855
No 94
>pfam08442 ATP-grasp_2 ATP-grasp domain.
Probab=77.98 E-value=5.8 Score=20.14 Aligned_cols=71 Identities=10% Similarity=0.178 Sum_probs=43.7
Q ss_pred HHHHCCCCEEECCHHHHHHHHHHHH--HHHHHCCCCCCCC----CEEEECCCCCCHHHHHHHHHHH----------C--C
Q ss_conf 5430443100037245568888521--4331116885434----4687448871158899999840----------0--1
Q gi|254780696|r 133 FSELMPPTLISRDITQITRFYLEMK--DIIIKPLYGNGGT----GVFRITLGDRNFSSLIEMLFEK----------Y--P 194 (316)
Q Consensus 133 ~~~~~P~T~vt~~~~~~~~f~~~~~--~vViKPl~g~~G~----gV~~i~~~~~~~~~~~e~~~~~----------~--~ 194 (316)
|--++|+..++++++++.++.++.+ ++|+|+=--.||| || ++..+...+....+.+..+ + -
T Consensus 14 ~gIpvp~g~~~~~~~ea~~~~~~l~~~~~VvKaQv~aGGRGKaGGV-k~~~~~~ea~~~a~~~lg~~l~T~QTg~~G~~V 92 (202)
T pfam08442 14 YGVPVPRGEVAFSPEEAEEIAKKLGGKVYVVKAQVLAGGRGKAGGV-KLAKSPEEAKEAAKEMLGKNLVTKQTGPEGKPV 92 (202)
T ss_pred CCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCEE-EEECCHHHHHHHHHHHCCCEEEEEECCCCCCEE
T ss_conf 5998999159699999999999809986999874235888767738-997899999999998729778755027889623
Q ss_pred CCCCEEECCC
Q ss_conf 3340021053
Q gi|254780696|r 195 EPLMIQSYLP 204 (316)
Q Consensus 195 ~~ii~Qefi~ 204 (316)
+.+++++.++
T Consensus 93 ~~vlvee~~~ 102 (202)
T pfam08442 93 NKVLVEEAVD 102 (202)
T ss_pred EEEEEEECCC
T ss_conf 3899985154
No 95
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=77.63 E-value=2.4 Score=22.63 Aligned_cols=220 Identities=20% Similarity=0.278 Sum_probs=107.2
Q ss_pred CCCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCC-----CCCHHHCCEEEEECCCCC
Q ss_conf 764679999999988988999954124899989999999999807774126504644-----352100636688328862
Q gi|254780696|r 20 KEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEK-----IIDLSQMDVILIRQDPPF 94 (316)
Q Consensus 20 ~~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~-----~~~L~~fD~i~iR~dPp~ 94 (316)
...|++.++.-|.+-|++.-.+-...= ...+..- .-.+.++-+.+-. .-.|.+.++|++=.. +|
T Consensus 25 ~SHSALqIl~GAK~EGF~T~~vc~~gr----~~~Y~~f------~~~De~iv~d~f~di~~~q~~L~~~NaI~IPhg-Sf 93 (356)
T PRK13278 25 GSHSSLQILKGAKKEGFRTIAICEKKR----EKFYKRF------PFADEFIIVDSFSDILEIQEELREMNAIVIPHG-SF 93 (356)
T ss_pred ECHHHHHHHCCHHHCCCCEEEEECCCC----CCHHHHC------CCCCEEEEECCHHHHHHHHHHHHHCCEEEECCC-CE
T ss_conf 442598885328773995799966997----4534547------764279994768999999999987896996488-85
Q ss_pred CHHHHHHHHHHHHHCCCCEEECCHHHHHHCC-CHHHHHHHHH----HCCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 2479999999986235850411748875256-5034334543----0443100037245568888521433111688543
Q gi|254780696|r 95 NMHYITSTYLLEKINPETLIVNNPFWIRNSP-EKIFVTEFSE----LMPPTLISRDITQITRFYLEMKDIIIKPLYGNGG 169 (316)
Q Consensus 95 d~~yi~~~~~Le~~~~~~~viN~p~~i~~~~-eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~~~~~vViKPl~g~~G 169 (316)
..|+..-.+ |.+ .+.++-|-. +.+|- |.-.--++.+ .+|+.+ .|++++. ++|++|.-...||
T Consensus 94 -v~Y~G~~~i-E~~--~VP~FGNR~-lLrwEs~r~~~~~lLe~Agi~~Pk~~--~~PeeID------r~VIVK~~gAkgg 160 (356)
T PRK13278 94 -VAYLGLENV-EEF--KVPMFGNRE-ILRWESDRDKERKLLEGAGIRIPRKY--EDPEDID------GPVIVKLPGAKGG 160 (356)
T ss_pred -EEEECHHHH-HHC--CCCCCCCHH-HHHHHHCHHHHHHHHHHCCCCCCEEC--CCHHHCC------CCEEEEECCCCCC
T ss_conf -898368888-508--888205877-86651030789999986799987115--8955578------5269974677777
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHC----CCCCCEEECCCCCCC----------CCEEEEEECCEE---EEEEEEECCCCC
Q ss_conf 446874488711588999998400----133400210534456----------826999989988---632122045686
Q gi|254780696|r 170 TGVFRITLGDRNFSSLIEMLFEKY----PEPLMIQSYLPQIRD----------GDKRILLLNGKP---VGAVNRIPSEVD 232 (316)
Q Consensus 170 ~gV~~i~~~~~~~~~~~e~~~~~~----~~~ii~Qefi~~~~~----------gD~Rv~vi~g~~---v~a~~R~~~~~~ 232 (316)
+|-| +..+-+++....+.+..++ -+...+|||+-.+.- +++-++=+|-+. +-.+.|.|++..
T Consensus 161 rGyF-~a~s~~ef~~k~~~l~~~g~i~d~~~~~IeEyv~G~~~~~~yFySpl~~~lEllg~D~R~esniDg~~rlPa~~q 239 (356)
T PRK13278 161 RGYF-IASSPEEFWEKIDRLKEKGLIEDVEKYIIQEYVVGVPYYIHYFYSPIKNRLELLGIDRRYESNIDGLVRIPAKDQ 239 (356)
T ss_pred CEEE-EECCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCEEEHHHCCCCCCCCEEEEECCEEEEECCHHHCCCCHHHH
T ss_conf 4589-957989999999998862754555442799983474123122035200661366310034405223204887888
Q ss_pred CC-----CCCCCCCCEEE--EECCHHHHHHHHHHHHHHH
Q ss_conf 00-----00001473111--0077899999999999999
Q gi|254780696|r 233 NR-----SNIHAGGKAEL--TKLTKIDLDICKRIGESLR 264 (316)
Q Consensus 233 ~r-----~Nl~~Gg~~~~--~~lt~~~~~i~~~~~~~L~ 264 (316)
.. +++-.|-.+.. ..|-++.-++.++..+.-+
T Consensus 240 le~~~~p~~vvvGn~p~vlRESLL~~vf~~ge~fV~a~k 278 (356)
T PRK13278 240 LEAGIDPTYVVTGNIPLVLRESLLPQVFEYGERFVEASK 278 (356)
T ss_pred HHCCCCCCEEEECCCCCEEEHHHHHHHHHHHHHHHHHHH
T ss_conf 536899846998885324417657999999999999999
No 96
>TIGR01426 MGT glycosyltransferase, MGT family; InterPro: IPR006326 These sequences belong to the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production. ; GO: 0016758 transferase activity transferring hexosyl groups, 0016999 antibiotic metabolic process.
Probab=76.41 E-value=1.8 Score=23.45 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHCCCEEEEEEHHHEEE
Q ss_conf 67999999998898899995412489
Q gi|254780696|r 23 STFAIALEAQVRGYQIFHYTPDQLYM 48 (316)
Q Consensus 23 TT~~Lm~eAq~RGheV~~~~~~dL~~ 48 (316)
=|+.+++|.-+|||+|.|..+.++.=
T Consensus 11 PtL~v~~ELV~RGh~VTY~~t~ef~~ 36 (429)
T TIGR01426 11 PTLGVVEELVARGHRVTYATTEEFAD 36 (429)
T ss_pred CCHHHHHHHHHCCCEEEEECCHHHHH
T ss_conf 65789999984597466317888999
No 97
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=74.94 E-value=3.4 Score=21.69 Aligned_cols=38 Identities=24% Similarity=0.262 Sum_probs=26.5
Q ss_pred CEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEH
Q ss_conf 318997099888484764679999999988988999954
Q gi|254780696|r 5 RNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTP 43 (316)
Q Consensus 5 ~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~ 43 (316)
|||+|+..++. +==..=..+.|+.+..+|||+|.++..
T Consensus 1 MkI~fi~p~l~-~GGaEr~v~~la~~L~~~Gh~V~v~t~ 38 (392)
T cd03805 1 LRVAFIHPDLG-IGGAERLVVDAALALQSRGHEVTIYTS 38 (392)
T ss_pred CEEEEECCCCC-CCHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 98999869999-986999999999999976993999972
No 98
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=72.16 E-value=6 Score=20.08 Aligned_cols=105 Identities=17% Similarity=0.137 Sum_probs=55.7
Q ss_pred CEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEE--HHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHHH
Q ss_conf 31899709988848476467999999998898899995--4124899989999999999807774126504644352100
Q gi|254780696|r 5 RNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYT--PDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQ 82 (316)
Q Consensus 5 ~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~--~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~~ 82 (316)
|||+++.- ...---.+.+||.+|||||--+- ++.+...++ +. -.+.+.|++... .-.|..
T Consensus 1 mKIaiIgA-------sG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~--------~~--i~q~Difd~~~~-a~~l~g 62 (211)
T COG2910 1 MKIAIIGA-------SGKAGSRILKEALKRGHEVTAIVRNASKLAARQG--------VT--ILQKDIFDLTSL-ASDLAG 62 (211)
T ss_pred CEEEEEEC-------CCHHHHHHHHHHHHCCCEEEEEEECHHHCCCCCC--------CE--EECCCCCCHHHH-HHHHCC
T ss_conf 90789953-------7456799999998679804899807676652235--------30--200022274566-766358
Q ss_pred CCEEEEECCCC---CCHHHH-HHHHHHHHHCC-CC---EEECCHHHHHHCCCH
Q ss_conf 63668832886---224799-99999986235-85---041174887525650
Q gi|254780696|r 83 MDVILIRQDPP---FNMHYI-TSTYLLEKINP-ET---LIVNNPFWIRNSPEK 127 (316)
Q Consensus 83 fD~i~iR~dPp---~d~~yi-~~~~~Le~~~~-~~---~viN~p~~i~~~~eK 127 (316)
||+|+---.++ -+..+. ..-.+++.++. ++ +|+--..|+.....+
T Consensus 63 ~DaVIsA~~~~~~~~~~~~~k~~~~li~~l~~agv~RllVVGGAGSL~id~g~ 115 (211)
T COG2910 63 HDAVISAFGAGASDNDELHSKSIEALIEALKGAGVPRLLVVGGAGSLEIDEGT 115 (211)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEECCCC
T ss_conf 76699721578887157788899999999861597059998474205876884
No 99
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=71.82 E-value=3.1 Score=21.95 Aligned_cols=165 Identities=19% Similarity=0.255 Sum_probs=83.3
Q ss_pred CCCCHHHHHHHHHHCCCEEEEEEHHHE--EEECCEEEEEEEEEEEECCCCCEEEECCCC-CCCHHHCCEEEEECCCCCCH
Q ss_conf 764679999999988988999954124--899989999999999807774126504644-35210063668832886224
Q gi|254780696|r 20 KEDSTFAIALEAQVRGYQIFHYTPDQL--YMRDSKIYANTQPLSLDEKKEQYYSLGEEK-IIDLSQMDVILIRQDPPFNM 96 (316)
Q Consensus 20 ~~DTT~~Lm~eAq~RGheV~~~~~~dL--~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~-~~~L~~fD~i~iR~dPp~d~ 96 (316)
...|++.+...|.+-|++.-..-...- .+.. -..|. ..-+.++ |-+..+++ .-.|.+.++||+-.. +|.
T Consensus 25 gSHSaL~Il~GAK~EGF~Ti~v~~~gr~~~Y~~-f~~a~--e~i~v~~---f~dil~~~iqe~L~~~n~I~IP~g-Sfv- 96 (361)
T COG1759 25 GSHSALQILDGAKEEGFRTIAVCQRGREKPYEK-FPVAD--EVIIVDK---FSDILNEEIQEELRELNAIFIPHG-SFV- 96 (361)
T ss_pred ECCHHHHHHHHHHHCCCCEEEEEECCCCCHHHH-CCHHH--EEEEECH---HHHHHHHHHHHHHHHCCEEEECCC-CEE-
T ss_conf 150478886337760872799983576236765-02023--4889520---477764899999987584994278-647-
Q ss_pred HHHHHHHHHHHHCCCCEEECCHHHHHHCCC--H--HHHHHHHH-HCCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 799999999862358504117488752565--0--34334543-044310003724556888852143311168854344
Q gi|254780696|r 97 HYITSTYLLEKINPETLIVNNPFWIRNSPE--K--IFVTEFSE-LMPPTLISRDITQITRFYLEMKDIIIKPLYGNGGTG 171 (316)
Q Consensus 97 ~yi~~~~~Le~~~~~~~viN~p~~i~~~~e--K--l~~~~~~~-~~P~T~vt~~~~~~~~f~~~~~~vViKPl~g~~G~g 171 (316)
.|+-.-.+-..+ .+.++-+-. +.+|-+ | .+.++-+. .+|+.+ .+++++. ++|++|+...-||+|
T Consensus 97 ~Y~G~d~ie~~~--~vP~fGnR~-lLrwE~~~~~~~~lLekAgi~~P~~~--~~PeeId------r~ViVK~pgAkggRG 165 (361)
T COG1759 97 AYVGYDGIENEF--EVPMFGNRE-LLRWEEDRKLEYKLLEKAGLRIPKKY--KSPEEID------RPVIVKLPGAKGGRG 165 (361)
T ss_pred EEECCHHHHHCC--CCCCCCCHH-HHHHHCCHHHHHHHHHHCCCCCCCCC--CCHHHCC------CCEEEECCCCCCCCE
T ss_conf 885314464411--466116676-75300033568999997499988566--9967868------736985577667743
Q ss_pred EEEECCCCCCHHHHHHHHHHHCC------CCCCEEECCC
Q ss_conf 68744887115889999984001------3340021053
Q gi|254780696|r 172 VFRITLGDRNFSSLIEMLFEKYP------EPLMIQSYLP 204 (316)
Q Consensus 172 V~~i~~~~~~~~~~~e~~~~~~~------~~ii~Qefi~ 204 (316)
-| +..+-+++....+.+...+- .+..+|||+=
T Consensus 166 yF-iA~s~eef~ek~erl~~~gvi~~Edlkna~IeEYv~ 203 (361)
T COG1759 166 YF-IASSPEEFYEKAERLLKRGVITEEDLKNARIEEYVV 203 (361)
T ss_pred EE-EECCHHHHHHHHHHHHHCCCCCHHHHHHCEEEEEEE
T ss_conf 79-976989999999999872876534432135447750
No 100
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=71.69 E-value=8.3 Score=19.11 Aligned_cols=102 Identities=9% Similarity=0.068 Sum_probs=59.0
Q ss_pred CCCCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCH
Q ss_conf 96533189970998884847646799999999889889999541248999899999999998077741265046443521
Q gi|254780696|r 1 MKKIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDL 80 (316)
Q Consensus 1 mkk~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L 80 (316)
|.+.||||++.= -.-+-..|++-..+|+|.+.-+..-.=.=+.|+. +.... ......+.....+
T Consensus 1 M~~~~~VaIvGA-------TG~VG~~li~lL~~~~~p~~~l~~laS~~saGk~------i~~~~---~~l~v~~~~~~~~ 64 (336)
T PRK05671 1 MSQPLDIAVVGA-------TGSVGEALVQVLEERDFPVGTLHLLASMESAGHS------VPFAG---KNLRVREVDSFDF 64 (336)
T ss_pred CCCCCEEEEECC-------CCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCE------EEECC---CEEEEEECCCCCC
T ss_conf 998887999998-------6499999999986369980269999876568987------54689---6789997882442
Q ss_pred HHCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEECCHHHHHH
Q ss_conf 0063668832886224799999999862358504117488752
Q gi|254780696|r 81 SQMDVILIRQDPPFNMHYITSTYLLEKINPETLIVNNPFWIRN 123 (316)
Q Consensus 81 ~~fD~i~iR~dPp~d~~yi~~~~~Le~~~~~~~viN~p~~i~~ 123 (316)
+++|++|.=.++-+...|. -..++.|++||+++...|.
T Consensus 65 ~~vDlvffa~~~~vs~~~a-----~~~~~aG~~VID~Ss~fr~ 102 (336)
T PRK05671 65 SQVKLAFFAAGAAVSRSFA-----EKALAAGCSVIDLSGALPS 102 (336)
T ss_pred CCCCEEEECCCHHHHHHHH-----HHHHHCCCEEEECCCCCCC
T ss_conf 4598899868816679989-----9999769979956201330
No 101
>pfam07894 DUF1669 Protein of unknown function (DUF1669). This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=71.19 E-value=2.1 Score=23.10 Aligned_cols=13 Identities=15% Similarity=0.217 Sum_probs=7.2
Q ss_pred CEEEEEECCEEEE
Q ss_conf 2699998998863
Q gi|254780696|r 210 DKRILLLNGKPVG 222 (316)
Q Consensus 210 D~Rv~vi~g~~v~ 222 (316)
-+||-.+.|....
T Consensus 205 n~rVRtv~G~~y~ 217 (284)
T pfam07894 205 NLRVRTVTGSTYY 217 (284)
T ss_pred CEEEEEECCCEEE
T ss_conf 5279983387677
No 102
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=70.80 E-value=2.2 Score=22.88 Aligned_cols=55 Identities=16% Similarity=0.319 Sum_probs=34.0
Q ss_pred HCCCCEEECCHHHHHHHHHHHH--HHHHHCCCCCCCC----CEEEECCCCCCHHHHHHHHHH
Q ss_conf 0443100037245568888521--4331116885434----468744887115889999984
Q gi|254780696|r 136 LMPPTLISRDITQITRFYLEMK--DIIIKPLYGNGGT----GVFRITLGDRNFSSLIEMLFE 191 (316)
Q Consensus 136 ~~P~T~vt~~~~~~~~f~~~~~--~vViKPl~g~~G~----gV~~i~~~~~~~~~~~e~~~~ 191 (316)
++|++.++.+++++.+..++++ ++|+|+=--.||| || ++.++........+.+..
T Consensus 18 Pvp~g~v~~s~eea~~~a~~lg~~~~VvKaQV~aGGRGKaGGV-k~~~s~~ea~~~a~~~lg 78 (387)
T COG0045 18 PVPPGYVATSPEEAEEAAKELGGGPVVVKAQVHAGGRGKAGGV-KLAKSPEEAKEAAEEILG 78 (387)
T ss_pred CCCCCEEEECHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCE-EEECCHHHHHHHHHHHHC
T ss_conf 8999545408999999999818996799922530576666766-883898999999999848
No 103
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=70.00 E-value=6.4 Score=19.86 Aligned_cols=38 Identities=18% Similarity=0.207 Sum_probs=28.2
Q ss_pred CEEEEEECCHH-HCCCCCCCHHHHHHHHHHCCCEEEEEEHHHE
Q ss_conf 31899709988-8484764679999999988988999954124
Q gi|254780696|r 5 RNIAIQMNHIS-TVKVKEDSTFAIALEAQVRGYQIFHYTPDQL 46 (316)
Q Consensus 5 ~kI~fimDpi~-~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL 46 (316)
|||+|..-|-. +++ -.++|+++..+|||+|.++.+.+.
T Consensus 1 Mril~~~~~~~GH~~----P~l~lA~~L~~rGh~Vt~~~~~~~ 39 (401)
T cd03784 1 MRVLITTIGSRGDVQ----PLVALAWALRAAGHEVRVATPPEF 39 (401)
T ss_pred CEEEEECCCCHHHHH----HHHHHHHHHHHCCCEEEEEECHHH
T ss_conf 979998798575899----999999999988995999938788
No 104
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=69.39 E-value=4.8 Score=20.67 Aligned_cols=220 Identities=17% Similarity=0.234 Sum_probs=109.5
Q ss_pred CCCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECC-------CCCCCHHHCCEEEEECCC
Q ss_conf 7646799999999889889999541248999899999999998077741265046-------443521006366883288
Q gi|254780696|r 20 KEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGE-------EKIIDLSQMDVILIRQDP 92 (316)
Q Consensus 20 ~~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~-------~~~~~L~~fD~i~iR~dP 92 (316)
...|++.++.-|.+-|++.-.+-...=. ..+.. +..-.+.+.-+.+ .-.-.|.+.++|++=..
T Consensus 21 gSHSALqIl~GAK~EGF~Tv~vc~kgRe----~~Y~~-----f~~~~De~iv~d~f~di~~~~~q~~L~~~NaI~IPhg- 90 (363)
T PRK13277 21 ASHSALDVLDGAKDEGFRTIAVCQRGRE----RTYRE-----FKGIVDEVIVLDKFKDILSEEIQEELREENAIFVPNR- 90 (363)
T ss_pred ECHHHHHHHCCHHHCCCCEEEEECCCCC----CHHHH-----CCCCCCEEEEECCHHHHHHHHHHHHHHHCCEEEECCC-
T ss_conf 4425988854487739947999579875----24775-----5577846999555777754899999987897996488-
Q ss_pred CCCHHHHHHHHHHHHHCC--CCEEECCHHHHHHCCC------HHHHHHHHH-HCCCCEEECCHHHHHHHHHHHHHHHHHC
Q ss_conf 622479999999986235--8504117488752565------034334543-0443100037245568888521433111
Q gi|254780696|r 93 PFNMHYITSTYLLEKINP--ETLIVNNPFWIRNSPE------KIFVTEFSE-LMPPTLISRDITQITRFYLEMKDIIIKP 163 (316)
Q Consensus 93 p~d~~yi~~~~~Le~~~~--~~~viN~p~~i~~~~e------Kl~~~~~~~-~~P~T~vt~~~~~~~~f~~~~~~vViKP 163 (316)
+| -.|+. .+..++ .+.++-|-. |.++-| +++.++-+. .+|+.+ .+++++. ++|++|.
T Consensus 91 Sf-v~Y~G----~d~iE~~~~VP~FGNR~-lLrwEer~~~~~~~~LLe~Agi~~Pk~~--~~PeeID------r~VIVK~ 156 (363)
T PRK13277 91 SF-AVYVG----YDAIENEFPVPIFGNRY-LLRWEERTGEKNYYRLLEKAGIPRPRTF--KPPEEID------RPVIVKL 156 (363)
T ss_pred CE-EEEEC----HHHHHCCCCCCEECCHH-HHHHCCCCHHHHHHHHHHHCCCCCCCCC--CCHHHCC------CCEEEEE
T ss_conf 84-67744----88885068887114756-6322345116789999986799987005--9966678------5269974
Q ss_pred CCCCC--CCCEEEECCCCCCHHHHHHHHHHHCC------CCCCEEECCCCCCC----------CCEEEEEECCEE---EE
Q ss_conf 68854--34468744887115889999984001------33400210534456----------826999989988---63
Q gi|254780696|r 164 LYGNG--GTGVFRITLGDRNFSSLIEMLFEKYP------EPLMIQSYLPQIRD----------GDKRILLLNGKP---VG 222 (316)
Q Consensus 164 l~g~~--G~gV~~i~~~~~~~~~~~e~~~~~~~------~~ii~Qefi~~~~~----------gD~Rv~vi~g~~---v~ 222 (316)
-...| |+|-| +..+-+++....+.+...+- +...+|||+-.+.- +++-++=+|-+. +-
T Consensus 157 ~gAkg~~grGyF-~a~s~~ef~~k~~~li~~G~I~~e~l~~~~IeEyv~G~~~~~~fFySpl~~~lEllgiD~R~esniD 235 (363)
T PRK13277 157 PEAKRRLERGFF-IAASYKDFYEKSERLIKQGVIDREDLEKARIEEYVIGAHFNFNYFYSPIRDRVELLGIDRRIQSNLD 235 (363)
T ss_pred CCCCCCCCCEEE-EECCHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEECCCEEEEEECCCCCCCCEEEEECCCEEEECHH
T ss_conf 567787763589-9679899999999998758757221444378998437646652102532375036631110241414
Q ss_pred EEEEECCCCCC-----CCCCCCCCCEEE--EECCHHHHHHHHHHHHHHH
Q ss_conf 21220456860-----000001473111--0077899999999999999
Q gi|254780696|r 223 AVNRIPSEVDN-----RSNIHAGGKAEL--TKLTKIDLDICKRIGESLR 264 (316)
Q Consensus 223 a~~R~~~~~~~-----r~Nl~~Gg~~~~--~~lt~~~~~i~~~~~~~L~ 264 (316)
...|.|++... -+++-.|-.+.. ..|-++.-++.++..+.-+
T Consensus 236 g~~rlpA~~Ql~~~~~p~~vvvGn~p~vlRESLL~~vf~~ge~fV~ask 284 (363)
T PRK13277 236 GFVRLPAPQQLKLNEEPRYIEVGHEPATIRESLLEKVFDMGEKFVEATK 284 (363)
T ss_pred HHHCCCHHHHHCCCCCCCEEEECCCCCEEEHHHHHHHHHHHHHHHHHHH
T ss_conf 4423986788416899845998885324317657999999999999999
No 105
>TIGR00289 TIGR00289 conserved hypothetical protein TIGR00289; InterPro: IPR005237 This family of conserved hypothetical proteins has no known function. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs in the family, the much longer protein YLR143W from Saccharomyces cerevisiae (Baker's yeast), and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group..
Probab=67.83 E-value=7.4 Score=19.44 Aligned_cols=30 Identities=17% Similarity=0.276 Sum_probs=24.5
Q ss_pred CEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEE
Q ss_conf 3189970998884847646799999999889889999
Q gi|254780696|r 5 RNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHY 41 (316)
Q Consensus 5 ~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~ 41 (316)
||+|.+.. =.|||++||=++++ .||+|-|+
T Consensus 1 MkvAvLyS------GGKDS~~ALy~al~-eG~eV~~L 30 (227)
T TIGR00289 1 MKVAVLYS------GGKDSILALYKALE-EGFEVKYL 30 (227)
T ss_pred CEEEEEEC------CCHHHHHHHHHHHH-CCCCEEEE
T ss_conf 90689851------87136899999986-28854785
No 106
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=67.18 E-value=10 Score=18.50 Aligned_cols=40 Identities=23% Similarity=0.251 Sum_probs=28.2
Q ss_pred EEEEEECCHH-HCCCCCCCHHHHHHHHHHCCCEEEEEEHHH
Q ss_conf 1899709988-848476467999999998898899995412
Q gi|254780696|r 6 NIAIQMNHIS-TVKVKEDSTFAIALEAQVRGYQIFHYTPDQ 45 (316)
Q Consensus 6 kI~fimDpi~-~i~~~~DTT~~Lm~eAq~RGheV~~~~~~d 45 (316)
||||+.|..- .+-=-...+..|+++..+|||+|.++.+..
T Consensus 1 kIaivt~~y~P~~GG~~~~~~~La~~L~~~GheV~Vit~~~ 41 (374)
T cd03817 1 KIGIFTDTYLPQVNGVATSIRRLAEELEKRGHEVYVVAPSY 41 (374)
T ss_pred CEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 98999589899998099999999999997799899997279
No 107
>TIGR01435 glu_cys_lig_rel putative glutamate--cysteine ligase/putative amino acid ligase; InterPro: IPR006335 This entry represents a family with an N-terminal region similar to proteobacterial glutamate-cysteine ligase (gamma-glutamylcysteine synthetase). The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria, and (shown by PSI-BLAST) to D-alanine-D-alanine ligases. Cyanophycin is a storage molecule composed of arginine, aspartic acid, and some glutamic acid. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced , and in proteobacterium Pasteurella multocida.; GO: 0004357 glutamate-cysteine ligase activity, 0006750 glutathione biosynthetic process.
Probab=64.23 E-value=5.8 Score=20.15 Aligned_cols=134 Identities=23% Similarity=0.370 Sum_probs=80.3
Q ss_pred CCCCEEECCHHHHHHHHHHH-H-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHH-H-HHCCCCCCEEECCCCCCCCCEE
Q ss_conf 44310003724556888852-1-43311168854344687448871158899999-8-4001334002105344568269
Q gi|254780696|r 137 MPPTLISRDITQITRFYLEM-K-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEML-F-EKYPEPLMIQSYLPQIRDGDKR 212 (316)
Q Consensus 137 ~P~T~vt~~~~~~~~f~~~~-~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~-~-~~~~~~ii~Qefi~~~~~gD~R 212 (316)
+|...-..+.....+....+ . ..|+||-....|.|.......-.+.....+.+ . -.+...+++.+|++ +.+.|
T Consensus 505 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~g~~~~~~~~~~~~d~~~~~~~~~~~d~~~~~~~~~~---g~~~~ 581 (754)
T TIGR01435 505 VPGGDEFSSLALALEAFLLFENKAFVVKPKSTNYGLGTTIFKEGFTNLEDFAEALRNAFKEDSEVLVEEFLP---GTEYR 581 (754)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC---CCCEE
T ss_conf 766530467888888887641330033235444433123443022105678999987642001343333115---76216
Q ss_pred EEEECCEEEEEEEEECCC--CCC---------------------------------------------------------
Q ss_conf 999899886321220456--860---------------------------------------------------------
Q gi|254780696|r 213 ILLLNGKPVGAVNRIPSE--VDN--------------------------------------------------------- 233 (316)
Q Consensus 213 v~vi~g~~v~a~~R~~~~--~~~--------------------------------------------------------- 233 (316)
.++++.++.+.+.|+|.. ||-
T Consensus 582 ~~~~~~~~~~~~~~~p~~~~gd~~~~~~~~~~~~~~~p~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 661 (754)
T TIGR01435 582 FFLLGDEVEAVLLRVPANVTGDGKHTVEELVAEKNDDPLRGTGHRKPLEKALGPDLEKLLLKEQGLTWDSVPSKEQLVYL 661 (754)
T ss_pred EEEECCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf 77635415667765044323540467999986305665566642111456532246777765405630124533567776
Q ss_pred --CCCCCCCCCE-EEE-ECCHHHHHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf --0000014731-110-077899999999999999849879999511
Q gi|254780696|r 234 --RSNIHAGGKA-ELT-KLTKIDLDICKRIGESLRERGLFFTGIDVI 276 (316)
Q Consensus 234 --r~Nl~~Gg~~-~~~-~lt~~~~~i~~~~~~~L~~~gl~~~GiDii 276 (316)
.+|++.||.. ... ++.+..++++..+...+ |...||+|++
T Consensus 662 ~~~~~~~~ggd~~d~~~~~~~~~~~~~~~~~~~~---~~~~cg~d~~ 705 (754)
T TIGR01435 662 RENSNVSTGGDSIDYTDELDDSYKELAVGATKAL---GAAVCGVDLI 705 (754)
T ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---HHHHCCCCEE
T ss_conf 5225544566532103455566777777778876---6544041002
No 108
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=63.41 E-value=7.6 Score=19.38 Aligned_cols=39 Identities=13% Similarity=0.096 Sum_probs=26.8
Q ss_pred EEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHH
Q ss_conf 189970998884847646799999999889889999541
Q gi|254780696|r 6 NIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPD 44 (316)
Q Consensus 6 kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~ 44 (316)
||+|+...+...-=..-....|+++..++||+|.++...
T Consensus 1 KIl~v~~~l~~~GG~e~~~~~la~~L~~~G~~V~vit~~ 39 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAEKGHEVTIISLD 39 (348)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 989997979999878999999999998779989999966
No 109
>PRK08534 pyruvate ferredoxin oxidoreductase subunit gamma; Reviewed
Probab=63.34 E-value=12 Score=18.03 Aligned_cols=82 Identities=13% Similarity=0.093 Sum_probs=54.4
Q ss_pred HHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHHHCCEEEEECCCCCCHHHHHHHH
Q ss_conf 79999999988988999954124899989999999999807774126504644352100636688328862247999999
Q gi|254780696|r 24 TFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQMDVILIRQDPPFNMHYITSTY 103 (316)
Q Consensus 24 T~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~~fD~i~iR~dPp~d~~yi~~~~ 103 (316)
+-.|.++|...|+.+..+..-...-++|.+.++. .+.+.+-.. .....+-|+++. |+...+.+..
T Consensus 18 g~iLa~aa~~~G~~v~~~~~yG~e~RGG~~~s~v---risd~pI~~-------~~~v~~pDilv~-----~~~~~~~~~~ 82 (181)
T PRK08534 18 AEILAKAAFEDGKFSQAFPFFGVERRGAPVTAFT---RIDDKPIRL-------RSQIYEPDYVIV-----QDPTLLETVD 82 (181)
T ss_pred HHHHHHHHHHCCCCEEEEECCCHHHCCCEEEEEE---EECCCCCCC-------CCCCCCCCEEEE-----CCHHHHHHHH
T ss_conf 9999999996597089986348344498689999---985874568-------766789979998-----6899998877
Q ss_pred HHHHHCC-CCEEECCHHH
Q ss_conf 9986235-8504117488
Q gi|254780696|r 104 LLEKINP-ETLIVNNPFW 120 (316)
Q Consensus 104 ~Le~~~~-~~~viN~p~~ 120 (316)
.++.+.. +++++|++..
T Consensus 83 ~~~~lk~~g~vivns~~~ 100 (181)
T PRK08534 83 VTSGLKDDGIIIINTEKS 100 (181)
T ss_pred HHCCCCCCCEEEEECCCC
T ss_conf 750739993899968987
No 110
>TIGR01497 kdpB K+-transporting ATPase, B subunit; InterPro: IPR006391 These sequences describe the P-type ATPase subunit of the complex responsible for translocating potassium ions across biological membranes in microbes. In Escherichia coli and other species, this complex consists of the proteins KdpA, KdpB, KdpC and KdpF. KdpB is the ATPase subunit, while KdpA is the potassium-ion translocating subunit . The function of KdpC is unclear, although it has been suggested to couple the ATPase subunit to the ion-translocating subunit , while KdpF serves to stabilize the complex . The potassium P-type ATPases have been characterised as Type IA based on a phylogenetic analysis which places this clade closest to the heavy-metal translocating ATPases (Type IB) . Others place this clade closer to the Na+/K+ antiporter type (Type IIC) based on physical characteristics . ; GO: 0008556 potassium-transporting ATPase activity, 0006813 potassium ion transport, 0016021 integral to membrane.
Probab=62.43 E-value=9.2 Score=18.84 Aligned_cols=31 Identities=23% Similarity=0.475 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHCCCEEEEE----EEECCEE-EEEEC
Q ss_conf 9999999999849879999----5117878-89836
Q gi|254780696|r 255 ICKRIGESLRERGLFFTGI----DVIGDYI-TEINV 285 (316)
Q Consensus 255 i~~~~~~~L~~~gl~~~Gi----Diig~~i-~EvNv 285 (316)
|--+-||-|++.|=+||.| =++.||| +||-+
T Consensus 156 ITGESAPV~kEsGgDfASVTGGTri~SDwL~ve~ta 191 (675)
T TIGR01497 156 ITGESAPVLKESGGDFASVTGGTRIVSDWLVVEVTA 191 (675)
T ss_pred CCCCCCCCCCCCCCCEEEECCCCEEEEEEEEEEEEE
T ss_conf 025788721078896546438845885568999982
No 111
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=62.06 E-value=6.3 Score=19.91 Aligned_cols=100 Identities=24% Similarity=0.342 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHHHH-CCCCCCEEECCCCCCCCCEEEEEECCEE-EEEEEEECCCCCCCCCCCCCCCEEEEEC---CHHHH
Q ss_conf 71158899999840-0133400210534456826999989988-6321220456860000001473111007---78999
Q gi|254780696|r 179 DRNFSSLIEMLFEK-YPEPLMIQSYLPQIRDGDKRILLLNGKP-VGAVNRIPSEVDNRSNIHAGGKAELTKL---TKIDL 253 (316)
Q Consensus 179 ~~~~~~~~e~~~~~-~~~~ii~Qefi~~~~~gD~Rv~vi~g~~-v~a~~R~~~~~~~r~Nl~~Gg~~~~~~l---t~~~~ 253 (316)
-++..++++.+... +-..+=+.+-++++++ +||++++|-. ++-+.|=+-..--|.|+ +|-+...-++ -+++.
T Consensus 53 i~d~e~l~~~lks~d~v~ev~i~~sle~iyG--KRvIiiGGGAqVsqVA~GAIsEADRHNi-RGERISvDTiPlVGEE~l 129 (218)
T COG1707 53 IDDFEKLLERLKSFDYVIEVEIHRSLEEIYG--KRVIIIGGGAQVSQVARGAISEADRHNI-RGERISVDTIPLVGEEEL 129 (218)
T ss_pred CCCHHHHHHHHHCCCEEEEEEECCHHHHHHC--CEEEEECCCHHHHHHHHHHCCHHHHCCC-CCCEEEEECCCCCCHHHH
T ss_conf 8789999998633454787620012888728--4799987836378998742234453255-652566402243675889
Q ss_pred HHHHHHHHHHHHCCCEEEEEEEECCEEE
Q ss_conf 9999999999984987999951178788
Q gi|254780696|r 254 DICKRIGESLRERGLFFTGIDVIGDYIT 281 (316)
Q Consensus 254 ~i~~~~~~~L~~~gl~~~GiDiig~~i~ 281 (316)
.-|.++...|.+-|+....=-++|++++
T Consensus 130 aEAVkAV~rLpRv~iLVLAGslMGGkIt 157 (218)
T COG1707 130 AEAVKAVARLPRVGILVLAGSLMGGKIT 157 (218)
T ss_pred HHHHHHHHCCCCCEEEEEECCCCCCHHH
T ss_conf 9999998505642268884443353689
No 112
>TIGR01986 glut_syn_euk glutathione synthetase; InterPro: IPR005615 This entry represents eukaryotic glutathione synthetase (6.3.2.3 from EC) (GSS), a homodimeric enzyme that catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to phosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis, the first step being catalysed by gamma-glutamylcysteine synthetase . In humans, defects in GSS are inherited in an autosomal recessive way and are the cause of severe metabolic acidosis, 5-oxoprolinuria, and increased rate of haemolysis and defective function of the central nervous system. ; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process.
Probab=61.73 E-value=8.7 Score=18.98 Aligned_cols=121 Identities=20% Similarity=0.243 Sum_probs=69.2
Q ss_pred EECCHHHHHHCCC----HHHHHH--HHHHCCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHH
Q ss_conf 4117488752565----034334--5430443100037245568888521433111688543446874488711588999
Q gi|254780696|r 114 IVNNPFWIRNSPE----KIFVTE--FSELMPPTLISRDITQITRFYLEMKDIIIKPLYGNGGTGVFRITLGDRNFSSLIE 187 (316)
Q Consensus 114 viN~p~~i~~~~e----Kl~~~~--~~~~~P~T~vt~~~~~~~~f~~~~~~vViKPl~g~~G~gV~~i~~~~~~~~~~~e 187 (316)
++-.|..|.++-+ ++..++ |..+-|==---...+-++.++++=+..|+||=..-||..|+. ++....+.
T Consensus 339 ~La~~g~Le~fL~G~~e~~~~lr~tFa~lYsLDdt~~G~e~~~~Al~~P~~FVLKPQREGGGNN~Yg-----~~i~~~L~ 413 (507)
T TIGR01986 339 ELAEPGVLERFLEGDAEEVAKLRKTFAGLYSLDDTKRGKEGIKLALEKPSKFVLKPQREGGGNNVYG-----EDIPELLK 413 (507)
T ss_pred EECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCH-----HHHHHHHH
T ss_conf 4558886533679887799999864313555788855068999998477555446432388777564-----67999975
Q ss_pred HHHH---HCCCCCCEEECC-CCCCCCCEEEEEECC-E-----------EEEEEEEECCCCCCCCCCCCCC
Q ss_conf 9984---001334002105-344568269999899-8-----------8632122045686000000147
Q gi|254780696|r 188 MLFE---KYPEPLMIQSYL-PQIRDGDKRILLLNG-K-----------PVGAVNRIPSEVDNRSNIHAGG 241 (316)
Q Consensus 188 ~~~~---~~~~~ii~Qefi-~~~~~gD~Rv~vi~g-~-----------~v~a~~R~~~~~~~r~Nl~~Gg 241 (316)
.+.. ...+.+|+=++| |+.. +--+++=+| + +.||+.|.-+..+...|=+.|=
T Consensus 414 ~l~~~Gee~~~aYILM~~I~p~~~--~nn~llr~~s~~~~~~~isELGiyG~~l~~~~~devv~N~~sG~ 481 (507)
T TIGR01986 414 KLKEEGEEEWDAYILMEKIEPEPS--ENNILLRDGSKAEKVQVISELGIYGVYLRNEKTDEVVVNEQSGF 481 (507)
T ss_pred HCCCCCCHHHHHHHHHHHCCCCCC--CCEEEECCCCCCCCCCCEEECCCEEEEEEECCCCEEEECCEEEE
T ss_conf 120025412478898765188503--36057588785444453131120157898617541643450201
No 113
>pfam04007 DUF354 Protein of unknown function (DUF354). Members of this family are around 350 amino acids in length. They are found in archaebacteria and have no known function.
Probab=60.93 E-value=10 Score=18.61 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=28.4
Q ss_pred CEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEE
Q ss_conf 31899709988848476467999999998898899995
Q gi|254780696|r 5 RNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYT 42 (316)
Q Consensus 5 ~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~ 42 (316)
|||.|=+..+.++..-+ .++.+.++|||+|.++.
T Consensus 1 MkIwiDI~~p~hvhfFk----~iI~eL~k~GheV~iTa 34 (335)
T pfam04007 1 LKVWIDITNAPHVHFFK----PIISELEKEGYEVLLTC 34 (335)
T ss_pred CEEEEECCCCCHHHHHH----HHHHHHHHCCCEEEEEE
T ss_conf 93999789950888899----99999986898899999
No 114
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=60.04 E-value=10 Score=18.54 Aligned_cols=39 Identities=10% Similarity=0.083 Sum_probs=27.4
Q ss_pred EEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHEE
Q ss_conf 189970998884847646799999999889889999541248
Q gi|254780696|r 6 NIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLY 47 (316)
Q Consensus 6 kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~ 47 (316)
||+|+.+-.-.. .-...-|+++..+|||+|.++.+.+-.
T Consensus 1 kil~i~~~~GG~---e~~~~~La~~L~~~Gh~V~vit~~~~~ 39 (359)
T cd03808 1 KILHIVTVDGGL---YSFRLPLIKALRAAGYEVHVVAPPGDE 39 (359)
T ss_pred CEEEEECCCCHH---HHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 989997587659---999999999999769999999707987
No 115
>TIGR02774 rexB_recomb ATP-dependent nuclease subunit B; InterPro: IPR014141 DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RecAB) in other. The AddA is conserved between the firmicutes and the alphaproteobacteria, while its partner protein (RexB) is not. The partner may be designated AddB, as in Bacillus and in alphaproteobacteria, or RexB as in Streptococcus and Lactococcus. Note, however, that RexB proteins lack an N-terminal GxxGxGK[ST] ATP-binding motif found in Bacillus subtilis and related species, and this difference may be important. This entry represents RexB proteins as found in Streptococcus and Lactococcus..
Probab=59.85 E-value=6.2 Score=19.95 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=19.5
Q ss_pred HHHHHHHHCCCEEEEEEHHHEEEE
Q ss_conf 999999988988999954124899
Q gi|254780696|r 26 AIALEAQVRGYQIFHYTPDQLYMR 49 (316)
Q Consensus 26 ~Lm~eAq~RGheV~~~~~~dL~~~ 49 (316)
..+.++-..|+.|||+.|+.||++
T Consensus 17 ~~A~~~a~~G~RvFYIAPNSLSFE 40 (1116)
T TIGR02774 17 NEAEEAAEAGKRVFYIAPNSLSFE 40 (1116)
T ss_pred HHHHHHHHCCCEEEEECCCCCCHH
T ss_conf 999999862990798658887647
No 116
>TIGR01743 purR_Bsub pur operon repressor; InterPro: IPR010078 This entry represents the pur operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.; GO: 0003677 DNA binding, 0016564 transcription repressor activity, 0016481 negative regulation of transcription, 0045982 negative regulation of purine base metabolic process.
Probab=57.06 E-value=12 Score=18.19 Aligned_cols=119 Identities=24% Similarity=0.375 Sum_probs=70.8
Q ss_pred EECCHHHHHHCCCHHHHH-HHHHH--CCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECC-CCCCHHHHHHHH
Q ss_conf 411748875256503433-45430--44310003724556888852143311168854344687448-871158899999
Q gi|254780696|r 114 IVNNPFWIRNSPEKIFVT-EFSEL--MPPTLISRDITQITRFYLEMKDIIIKPLYGNGGTGVFRITL-GDRNFSSLIEML 189 (316)
Q Consensus 114 viN~p~~i~~~~eKl~~~-~~~~~--~P~T~vt~~~~~~~~f~~~~~~vViKPl~g~~G~gV~~i~~-~~~~~~~~~e~~ 189 (316)
++|+| +||-.| +|.+. .-++-+++|..-+++.+++.+===+...-|.+| ||-.+-. +..+....++.+
T Consensus 14 L~~nP-------~kLi~L~~F~d~y~~AKSsiSEDi~I~~~~le~~~~G~~~T~~GAaG-Gv~YiP~~~~~~~~~fv~~l 85 (269)
T TIGR01743 14 LIENP-------NKLISLNKFSDKYESAKSSISEDIVIIKEVLEKFDIGKLETVPGAAG-GVKYIPEVSEKEAKEFVEEL 85 (269)
T ss_pred HHHCC-------EEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCC-CEEEECCCCCHHHHHHHHHH
T ss_conf 74278-------01027005787764211110144899999850068864786147889-70584564604568899999
Q ss_pred HHHCCCC--------------------------CCEEECCCCCCCCCEEEEEE-CCEEEE------------EEEEEC--
Q ss_conf 8400133--------------------------40021053445682699998-998863------------212204--
Q gi|254780696|r 190 FEKYPEP--------------------------LMIQSYLPQIRDGDKRILLL-NGKPVG------------AVNRIP-- 228 (316)
Q Consensus 190 ~~~~~~~--------------------------ii~Qefi~~~~~gD~Rv~vi-~g~~v~------------a~~R~~-- 228 (316)
-+...+| +++..|.+ ++=|.=+.|- -|-|+| .+||=.
T Consensus 86 ~~~l~~s~Ri~PGgflY~~Dll~~Psi~ski~~ila~~F~d--~~ID~V~TV~TKGvPLA~~~A~~LnV~lvivRkD~kv 163 (269)
T TIGR01743 86 CEKLSESERILPGGFLYLTDLLFKPSILSKIGKILASVFID--KEIDAVMTVETKGVPLAYAVAKVLNVPLVIVRKDSKV 163 (269)
T ss_pred HHHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCC--CCCCEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCE
T ss_conf 98622888403774755534541781577788887543268--5578789952188238989987649617999846812
Q ss_pred CCCCCCC-CCCCCCC
Q ss_conf 5686000-0001473
Q gi|254780696|r 229 SEVDNRS-NIHAGGK 242 (316)
Q Consensus 229 ~~~~~r~-Nl~~Gg~ 242 (316)
.||++.| |.=.|.+
T Consensus 164 TEGStVSiNYVSGss 178 (269)
T TIGR01743 164 TEGSTVSINYVSGSS 178 (269)
T ss_pred ECCCEEEEEEEECCC
T ss_conf 105328995567687
No 117
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=55.26 E-value=12 Score=18.10 Aligned_cols=41 Identities=17% Similarity=0.078 Sum_probs=26.3
Q ss_pred EEEEEEC--CHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHE
Q ss_conf 1899709--9888484764679999999988988999954124
Q gi|254780696|r 6 NIAIQMN--HISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQL 46 (316)
Q Consensus 6 kI~fimD--pi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL 46 (316)
||+|+.+ |++.+--..-.+..|+++..++||+|.++.+..-
T Consensus 1 rIl~vt~~~pP~~~GG~e~~~~~la~~L~~~Gh~V~v~~~~~~ 43 (359)
T cd03823 1 RILVVNHLYPPRSVGGAEVVAHDLAEALAKRGHEVAVLTAGED 43 (359)
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 9999948648999764999999999999977998999955798
No 118
>pfam04169 DUF404 Domain of unknown function (DUF404).
Probab=54.87 E-value=11 Score=18.41 Aligned_cols=17 Identities=18% Similarity=0.454 Sum_probs=9.3
Q ss_pred HCCCCEEECCHHHHHHH
Q ss_conf 04431000372455688
Q gi|254780696|r 136 LMPPTLISRDITQITRF 152 (316)
Q Consensus 136 ~~P~T~vt~~~~~~~~f 152 (316)
.+|+-+|.+++.-.+..
T Consensus 90 viP~~lv~~~p~flr~~ 106 (253)
T pfam04169 90 VLPPELVYGNPGFLRPM 106 (253)
T ss_pred CCCHHHHHCCCCCCHHH
T ss_conf 99999982290016986
No 119
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=53.97 E-value=13 Score=17.76 Aligned_cols=39 Identities=5% Similarity=-0.026 Sum_probs=25.8
Q ss_pred CEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHH
Q ss_conf 3189970998884847646799999999889889999541
Q gi|254780696|r 5 RNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPD 44 (316)
Q Consensus 5 ~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~ 44 (316)
|||+++.+.... ==..-..+.|+++..++||+|.++...
T Consensus 1 MKIL~v~~~~~~-GGae~~~~~L~~~L~~~Gh~v~v~~~~ 39 (365)
T cd03825 1 MKVLHLNTSDIS-GGAARAAYRLHRALQAAGVDSTMLVQE 39 (365)
T ss_pred CEEEEEECCCCC-CCHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 959999389999-238999999999999779908999926
No 120
>PRK00207 hypothetical protein; Validated
Probab=53.63 E-value=13 Score=17.87 Aligned_cols=34 Identities=12% Similarity=0.078 Sum_probs=22.7
Q ss_pred CEE-EEEECCHHHCCCCCCCHHHHHHHHHHCCCEEE
Q ss_conf 318-99709988848476467999999998898899
Q gi|254780696|r 5 RNI-AIQMNHISTVKVKEDSTFAIALEAQVRGYQIF 39 (316)
Q Consensus 5 ~kI-~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~ 39 (316)
||. +.|.-|+-+ .-..+|-+.+++++.++||++.
T Consensus 1 M~y~l~V~~~py~-~q~a~~A~~FA~A~l~~GH~I~ 35 (128)
T PRK00207 1 MRYAIAVTGPAYG-TQQASSAYQFAQALLAEGHEIV 35 (128)
T ss_pred CEEEEEEECCCCC-CHHHHHHHHHHHHHHHCCCEEE
T ss_conf 9799999569987-6529999999999998899798
No 121
>PRK10307 predicted glycosyl transferase; Provisional
Probab=53.57 E-value=18 Score=16.97 Aligned_cols=36 Identities=17% Similarity=-0.031 Sum_probs=25.8
Q ss_pred CEEEEEECCHHHCCCCCC----CHHHHHHHHHHCCCEEEEEEH
Q ss_conf 318997099888484764----679999999988988999954
Q gi|254780696|r 5 RNIAIQMNHISTVKVKED----STFAIALEAQVRGYQIFHYTP 43 (316)
Q Consensus 5 ~kI~fimDpi~~i~~~~D----TT~~Lm~eAq~RGheV~~~~~ 43 (316)
|||+++.+.. -|... .+..|.++..+|||+|.++..
T Consensus 1 MrIl~vs~~y---~P~~~G~~~~~~~La~~L~~~GheV~Vit~ 40 (415)
T PRK10307 1 MKILVYGINY---APELTGIGKYTGEMAEWLAARGHEVRVITA 40 (415)
T ss_pred CEEEEECCCC---CCCCCCHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 9899985848---997887999999999999978998999977
No 122
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=53.54 E-value=18 Score=16.96 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=25.0
Q ss_pred EEEEEECCHHHCCCCCCCHH--HHHHHHHHCCCEEEEEEHHH
Q ss_conf 18997099888484764679--99999998898899995412
Q gi|254780696|r 6 NIAIQMNHISTVKVKEDSTF--AIALEAQVRGYQIFHYTPDQ 45 (316)
Q Consensus 6 kI~fimDpi~~i~~~~DTT~--~Lm~eAq~RGheV~~~~~~d 45 (316)
||+|+.... |.-..|+ .++++.++|||+|.++.+..
T Consensus 1 ki~~v~~~~----P~~~etfv~~la~~L~~~GHeV~v~~~~~ 38 (355)
T cd03799 1 KIAYLVKEF----PRLSETFILREILALEAAGHEVEIFSLRP 38 (355)
T ss_pred CEEEECCCC----CCCCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 989998989----89961799999999996798499995348
No 123
>PRK11914 diacylglycerol kinase; Reviewed
Probab=53.29 E-value=18 Score=16.94 Aligned_cols=41 Identities=12% Similarity=0.165 Sum_probs=27.9
Q ss_pred CCCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEE
Q ss_conf 65331899709988848476467999999998898899995
Q gi|254780696|r 2 KKIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYT 42 (316)
Q Consensus 2 kk~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~ 42 (316)
++|+|++++.||.+.=--....--.+..+.+++|.++....
T Consensus 4 ~~m~kv~vIvNP~aG~g~~~~~~~~i~~~l~~~g~~~~~~~ 44 (304)
T PRK11914 4 HEIGKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIV 44 (304)
T ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 45866999999777998568899999999998799099993
No 124
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase; InterPro: IPR002292 The ornithine carbamoyltransferases are a family of enzymes that catalyse the production of citrulline from carbamoyl-phosphate and ornithine . This reaction is part of the arginine biosynthetic pathway, and in some organisms the reaction is also part of the arginine deaminase pathway . In most prokaryotes, and some lower eukaryotes, the enzyme is found in the cytoplasm, but in higher eukaryotes, such as mammals, the enzyme is found in the mitochondrial matrix and functions as part of the urea cycle. In most organisms analysed to date, the enzyme has been shown to consist of a trimer of identical or nonidentical subunits . Extensive similarity has been found within the ornithine carbamoyltransferase family, some of the conserved areas being important in catalysis . The C-terminal region of these enzymes shows a degree of similarity to the aspartate carbamoyltransferases, which are also known to bind carbamoyl- phosphate . This region contains a highly conserved Cys residue (in a His-Cys-Lys-Pro motif) implicated in ornithine binding . ; GO: 0004585 ornithine carbamoyltransferase activity, 0006520 amino acid metabolic process, 0009348 ornithine carbamoyltransferase complex.
Probab=52.47 E-value=18 Score=16.85 Aligned_cols=82 Identities=16% Similarity=0.187 Sum_probs=56.1
Q ss_pred CEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHHHCC
Q ss_conf 31899709988848476467999999998898899995412489998999999999980777412650464435210063
Q gi|254780696|r 5 RNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQMD 84 (316)
Q Consensus 5 ~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~~fD 84 (316)
|.||.+-. ++++=|=+++=-++-..|=++-|++++++-+-.|+.+..+.++- . .=.|
T Consensus 46 KtlAliFe-----K~STRTRvSFEvA~y~lGg~~lyL~~~~~QlG~gEsi~DTARVL-----s-------------RyVD 102 (341)
T TIGR00658 46 KTLALIFE-----KPSTRTRVSFEVAAYQLGGQPLYLNPSDLQLGRGESIKDTARVL-----S-------------RYVD 102 (341)
T ss_pred CCEEEEEE-----CCCCCCCCCHHHHHHHCCCCEEECCCCCCEECCCCCCCCHHHHH-----C-------------CEEE
T ss_conf 81666652-----69865210077999864982122487532003688700011020-----3-------------1565
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCC-CCEEECC
Q ss_conf 66883288622479999999986235-8504117
Q gi|254780696|r 85 VILIRQDPPFNMHYITSTYLLEKINP-ETLIVNN 117 (316)
Q Consensus 85 ~i~iR~dPp~d~~yi~~~~~Le~~~~-~~~viN~ 117 (316)
+|++|. ...+.+.++++. +|.|||.
T Consensus 103 ~I~~R~--------~~h~~v~~lA~yasVPVINg 128 (341)
T TIGR00658 103 GIMARV--------YKHEDVEELAKYASVPVING 128 (341)
T ss_pred EEEEEC--------CCHHHHHHHHHHCCCCEECC
T ss_conf 677732--------55378999985489854605
No 125
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=51.66 E-value=15 Score=17.41 Aligned_cols=38 Identities=13% Similarity=0.093 Sum_probs=26.5
Q ss_pred EEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHH
Q ss_conf 189970998884847646799999999889889999541
Q gi|254780696|r 6 NIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPD 44 (316)
Q Consensus 6 kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~ 44 (316)
||+|+++.++. ==..-.++.|+++..+|||+|.++...
T Consensus 1 KIl~vi~~l~~-GG~e~~~~~la~~L~~~G~~V~v~~~~ 38 (360)
T cd04951 1 KILYVITGLGL-GGAEKQVVDLADQFVAKGHQVAIISLT 38 (360)
T ss_pred CEEEEECCCCC-CCHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 98999699998-137999999999999769989999817
No 126
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=51.14 E-value=12 Score=18.06 Aligned_cols=17 Identities=29% Similarity=0.803 Sum_probs=9.3
Q ss_pred HHCCEEEEECCCCCCHHHH
Q ss_conf 0063668832886224799
Q gi|254780696|r 81 SQMDVILIRQDPPFNMHYI 99 (316)
Q Consensus 81 ~~fD~i~iR~dPp~d~~yi 99 (316)
..||+||+ ||||+...+
T Consensus 119 ~~fDlIF~--DPPY~~~~~ 135 (198)
T PRK10909 119 TPHNVVFV--DPPFRKGLL 135 (198)
T ss_pred CCEEEEEE--CCCCCCCHH
T ss_conf 95218998--999765559
No 127
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=49.73 E-value=16 Score=17.22 Aligned_cols=39 Identities=13% Similarity=-0.052 Sum_probs=24.3
Q ss_pred CCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEE
Q ss_conf 533189970998884847646799999999889889999
Q gi|254780696|r 3 KIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHY 41 (316)
Q Consensus 3 k~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~ 41 (316)
|-|||+|+.+.+...--..-....|+.+..++||++.++
T Consensus 1 ~~MKIlfi~~~l~~~GGaErvl~~La~~L~~~~~~~~v~ 39 (361)
T PRK09922 1 KKMKIAFIGEAVSGFGGMETVISNVINTFENSKINCEMF 39 (361)
T ss_pred CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 970999999999998804999999999998719987999
No 128
>KOG2155 consensus
Probab=48.97 E-value=9.9 Score=18.63 Aligned_cols=80 Identities=21% Similarity=0.362 Sum_probs=47.5
Q ss_pred HCCCCEE--ECCHHHHHHHHHH-----HHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCC--
Q ss_conf 0443100--0372455688885-----214331116885434468744887115889999984001334002105344--
Q gi|254780696|r 136 LMPPTLI--SRDITQITRFYLE-----MKDIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQI-- 206 (316)
Q Consensus 136 ~~P~T~v--t~~~~~~~~f~~~-----~~~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~-- 206 (316)
..|+|+= |.=+.-+..|-.+ +.-+|+||-+-..|-... + .+++++|+.... . .|-++|+||+..
T Consensus 385 Wlq~TyNL~TqLpqFv~~fq~Rer~g~~N~WI~KPWNlAR~~Dt~-v---T~~L~~IIRm~E-t--gPKiv~kYIe~P~L 457 (631)
T KOG2155 385 WLQLTYNLNTQLPQFVARFQNRERNGQHNVWIVKPWNLARGMDTT-V---TEDLNQIIRMIE-T--GPKIVCKYIERPLL 457 (631)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHHHCCCCH-H---HHHHHHHHHHHH-C--CCHHHHHHCCCCCE
T ss_conf 425643523220899999988875376764885122444035441-4---543999999873-2--86678871687321
Q ss_pred -CCC--CEEEEEE-CC-EEEE
Q ss_conf -568--2699998-99-8863
Q gi|254780696|r 207 -RDG--DKRILLL-NG-KPVG 222 (316)
Q Consensus 207 -~~g--D~Rv~vi-~g-~~v~ 222 (316)
+.| |+|-+|+ ++ .|+-
T Consensus 458 Fr~gKFDlRYiVllrsi~Pl~ 478 (631)
T KOG2155 458 FRNGKFDLRYIVLLRSIAPLT 478 (631)
T ss_pred EECCCCCEEEEEEECCCCCHH
T ss_conf 306744458999970455255
No 129
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=48.14 E-value=18 Score=16.91 Aligned_cols=37 Identities=11% Similarity=-0.003 Sum_probs=26.2
Q ss_pred CEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCE-EEEE
Q ss_conf 318997099888484764679999999988988-9999
Q gi|254780696|r 5 RNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQ-IFHY 41 (316)
Q Consensus 5 ~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGhe-V~~~ 41 (316)
|++.++...+.--...-+|.+.+.+++.+.||+ +.++
T Consensus 1 m~~~I~vt~ppYg~q~a~~A~~fA~all~~gh~~v~iF 38 (126)
T COG1553 1 MKYTIVVTGPPYGTESAFSALRFAEALLEQGHELVRLF 38 (126)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 96999980598763778999999999996589289999
No 130
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=47.53 E-value=22 Score=16.36 Aligned_cols=37 Identities=14% Similarity=0.084 Sum_probs=26.6
Q ss_pred EEEEEECCHHHCCCC----CCCHHHHHHHHHHCCCEEEEEEHHH
Q ss_conf 189970998884847----6467999999998898899995412
Q gi|254780696|r 6 NIAIQMNHISTVKVK----EDSTFAIALEAQVRGYQIFHYTPDQ 45 (316)
Q Consensus 6 kI~fimDpi~~i~~~----~DTT~~Lm~eAq~RGheV~~~~~~d 45 (316)
||+++.+.. .|. ......|+++..+|||+|.++....
T Consensus 1 KIl~i~~~~---~P~~GG~e~~~~~la~~L~~~Gh~V~v~t~~~ 41 (375)
T cd03821 1 KILHVIPSF---DPKYGGPVRVVLNLSKALAKLGHEVTVATTDA 41 (375)
T ss_pred CEEEEECCC---CCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 989995988---99999899999999999997799899997079
No 131
>pfam09182 PuR_N Bacterial purine repressor, N-terminal. The N-terminal domain of the bacterial purine repressor PuR is a winged-helix domain, a subdivision of the HTH structural family. It consists of a canonical arrangement of secondary structures: a1-b1-a2-T-a3-b2-W-b3, where a2-T-a3 is the HTH motif, a3 is the recognition helix, and W is the wing. The domain allows for recognition of a conserved CGAA sequence in the centre of a DNA PurBox, resulting in binding to the major groove of DNA.
Probab=46.27 E-value=14 Score=17.62 Aligned_cols=50 Identities=26% Similarity=0.358 Sum_probs=35.5
Q ss_pred CCHHHHHH-HHHH--CCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 65034334-5430--443100037245568888521433111688543446874
Q gi|254780696|r 125 PEKIFVTE-FSEL--MPPTLISRDITQITRFYLEMKDIIIKPLYGNGGTGVFRI 175 (316)
Q Consensus 125 ~eKl~~~~-~~~~--~P~T~vt~~~~~~~~f~~~~~~vViKPl~g~~G~gV~~i 175 (316)
++|+.++. |.+. .-++-+++|..-+++.+++.+-=-+..+-|..| ||..+
T Consensus 17 P~~li~L~~Fae~~~~AKSsISEDl~iik~~~~~~g~G~leTi~GaaG-Gv~yi 69 (70)
T pfam09182 17 PNKLIPLTYFAERFGSAKSSISEDLVIIKETFEKFGLGKLETIPGAAG-GVKYI 69 (70)
T ss_pred CCCEECHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC-CEEEC
T ss_conf 985574999999866010203757999999998739862998458777-85637
No 132
>PRK09739 hypothetical protein; Provisional
Probab=46.00 E-value=21 Score=16.48 Aligned_cols=40 Identities=30% Similarity=0.244 Sum_probs=26.8
Q ss_pred CCEEEEEECCHHHCCCCCCC-HH----HHHHHHHHCCCEEEEEEHHHEEE
Q ss_conf 33189970998884847646-79----99999998898899995412489
Q gi|254780696|r 4 IRNIAIQMNHISTVKVKEDS-TF----AIALEAQVRGYQIFHYTPDQLYM 48 (316)
Q Consensus 4 ~~kI~fimDpi~~i~~~~DT-T~----~Lm~eAq~RGheV~~~~~~dL~~ 48 (316)
.|||++|.-. |..+| |- +.++++++.||+|.+.+.-...+
T Consensus 3 ~kkiLIV~aH-----P~~~S~~~ala~~~~~~l~~~GheV~v~DLy~~~F 47 (201)
T PRK09739 3 SERIYLVWAH-----PRHDSLTAKVADAIHQRAQERGIQVTELDLYRRGF 47 (201)
T ss_pred CCEEEEEECC-----CCCCCHHHHHHHHHHHHHHHCCCEEEEEEHHHCCC
T ss_conf 7779999738-----99865689999999999998799599997130269
No 133
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=45.48 E-value=22 Score=16.33 Aligned_cols=37 Identities=14% Similarity=0.157 Sum_probs=26.8
Q ss_pred EEEEEECCHHHCCCCC--CCHHHHHHHHHHCCCEEEEEEHHH
Q ss_conf 1899709988848476--467999999998898899995412
Q gi|254780696|r 6 NIAIQMNHISTVKVKE--DSTFAIALEAQVRGYQIFHYTPDQ 45 (316)
Q Consensus 6 kI~fimDpi~~i~~~~--DTT~~Lm~eAq~RGheV~~~~~~d 45 (316)
||+|++..++ ... -....|+++..++||+|.++...+
T Consensus 1 KIl~v~~~~~---~GG~e~~~~~la~~L~~~G~~V~vi~~~~ 39 (353)
T cd03811 1 KILFVIPSLG---GGGAERVLLNLANGLDKRGYDVTLVVLRD 39 (353)
T ss_pred CEEEEECCCC---CCHHHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 9899969999---91599999999999997799799999779
No 134
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=45.08 E-value=24 Score=16.11 Aligned_cols=34 Identities=24% Similarity=0.356 Sum_probs=25.1
Q ss_pred CCEEEEEECCHHHCCCCCCC-------HHHHHHHHHHCCCEEEEEEHHH
Q ss_conf 33189970998884847646-------7999999998898899995412
Q gi|254780696|r 4 IRNIAIQMNHISTVKVKEDS-------TFAIALEAQVRGYQIFHYTPDQ 45 (316)
Q Consensus 4 ~~kI~fimDpi~~i~~~~DT-------T~~Lm~eAq~RGheV~~~~~~d 45 (316)
||+..|+ ..+|| |-+|.+++..+|+++.++-|-.
T Consensus 1 m~~~~fV--------tGTDT~VGKTv~S~aL~~~l~~~g~~~~~~KPVq 41 (223)
T COG0132 1 MMKRFFV--------TGTDTGVGKTVVSAALAQALKQQGYSVAGYKPVQ 41 (223)
T ss_pred CCCEEEE--------EECCCCCCHHHHHHHHHHHHHHCCCCEEEECCEE
T ss_conf 9736999--------8279996499999999999996897059877522
No 135
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit; InterPro: IPR005809 There are four different enzymes that share a similar catalytic mechanism which involves the phosphorylation by ATP (or GTP) of a specific histidine residue in the active site. These enzymes are: ATP citrate-lyase (4.1.3.8 from EC) , the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA in many tissues, catalyzes the formation of acetyl-CoA and oxaloacetate from citrate and CoA with the concomitant hydrolysis of ATP to ADP and phosphate. ATP-citrate lyase is a tetramer of identical subunits; Succinyl-CoA ligase (GDP-forming) (6.2.1.4 from EC) is a mitochondrial enzyme that catalyzes the substrate level phosphorylation step of the tricarboxylic acid cycle: the formation of succinyl-CoA from succinate with a concomitant hydrolysis of GTP to GDP and phosphate. This enzyme is a dimer composed of an alpha and a beta subunits; Succinyl-CoA ligase (ADP-forming) (6.2.1.5 from EC) is a bacterial enzyme that during aerobic metabolism functions in the citric acid cycle, coupling the hydrolysis of succinyl-CoA to the synthesis of ATP. It can also function in the other direction for anabolic purposes. This enzyme is a tetramer composed of two alpha and two beta subunits; and Malate-CoA ligase (6.2.1.9 from EC) (malyl-CoA synthetase) , is a bacterial enzyme that forms malyl-CoA from malate and CoA with the concomitant hydrolysis of ATP to ADP and phosphate. Malate-CoA ligase is composed of two different subunits. This entry corresponds to a conserved region located in the first half of ATP citrate lyase and in the beta subunits of succinyl-CoA ligases and malate-CoA ligase. ; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=44.84 E-value=9.9 Score=18.64 Aligned_cols=54 Identities=17% Similarity=0.314 Sum_probs=36.8
Q ss_pred HCCCCEEECCHHHHHHHHHHHH--HHHHHCCCCCCCC----CEEEECCCCCCHHHHHHHHH
Q ss_conf 0443100037245568888521--4331116885434----46874488711588999998
Q gi|254780696|r 136 LMPPTLISRDITQITRFYLEMK--DIIIKPLYGNGGT----GVFRITLGDRNFSSLIEMLF 190 (316)
Q Consensus 136 ~~P~T~vt~~~~~~~~f~~~~~--~vViKPl~g~~G~----gV~~i~~~~~~~~~~~e~~~ 190 (316)
++|+..|+++.+++...+++.+ ++|+|-=--.||| ||. +.++...+....+.+.
T Consensus 18 Pvp~g~v~~s~~e~~~~~~~~g~~~~VvKaQVhaGGRGKAGGv~-~a~s~ee~~~~a~~ll 77 (389)
T TIGR01016 18 PVPEGEVATSVEEVEEIAEELGEGKVVVKAQVHAGGRGKAGGVK-VAKSKEEALKAAEKLL 77 (389)
T ss_pred CCCCCCEEECHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCEE-EEECHHHHHHHHHHHH
T ss_conf 67886004167899999997079978999877326711215768-9708799999999870
No 136
>PRK13055 putative lipid kinase; Reviewed
Probab=43.25 E-value=26 Score=15.93 Aligned_cols=39 Identities=13% Similarity=0.131 Sum_probs=26.0
Q ss_pred CCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEE
Q ss_conf 533189970998884847646799999999889889999
Q gi|254780696|r 3 KIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHY 41 (316)
Q Consensus 3 k~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~ 41 (316)
||+|++++.||.+.=.-....--.+....+++|+++..+
T Consensus 1 MmKr~~lIvNP~SG~g~~~~~~~~i~~~L~~~g~e~~~~ 39 (334)
T PRK13055 1 MQKRARLIYNPTSGQEIMKKNVADILDILEQAGYETSAF 39 (334)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 970699999987789757889999999999869859999
No 137
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=43.19 E-value=26 Score=15.93 Aligned_cols=41 Identities=15% Similarity=0.016 Sum_probs=25.9
Q ss_pred EEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHE
Q ss_conf 18997099888484764679999999988988999954124
Q gi|254780696|r 6 NIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQL 46 (316)
Q Consensus 6 kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL 46 (316)
||||+.+=+-...=-...+..|.++..++||+|.++...+-
T Consensus 1 kI~~i~~ypP~~GGi~~~~~~La~~L~~~Gh~V~v~~~~~~ 41 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAAL 41 (366)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 98999189999983899999999999867998999958888
No 138
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family; InterPro: IPR011911 Glutaredoxins , , , also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system . Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond . It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon . Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system..
Probab=41.67 E-value=24 Score=16.14 Aligned_cols=23 Identities=39% Similarity=0.612 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf 99999999999849879999511
Q gi|254780696|r 254 DICKRIGESLRERGLFFTGIDVI 276 (316)
Q Consensus 254 ~i~~~~~~~L~~~gl~~~GiDii 276 (316)
.-|.++.++|+..|+.|--+|+-
T Consensus 11 p~C~~aK~yL~~~gv~f~~~dV~ 33 (79)
T TIGR02196 11 PPCKKAKEYLTSKGVAFEEIDVE 33 (79)
T ss_pred CCHHHHHHHHHHCCCCEEEECCC
T ss_conf 20789999999549945763433
No 139
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=40.73 E-value=26 Score=15.88 Aligned_cols=18 Identities=33% Similarity=0.355 Sum_probs=12.2
Q ss_pred HHHHHHHHHHCCCEEEEE
Q ss_conf 799999999889889999
Q gi|254780696|r 24 TFAIALEAQVRGYQIFHY 41 (316)
Q Consensus 24 T~~Lm~eAq~RGheV~~~ 41 (316)
|=+|-.||..||-.--++
T Consensus 54 SGaLGlEAlSRGA~~~~~ 71 (187)
T COG0742 54 SGALGLEALSRGAARVVF 71 (187)
T ss_pred CCHHHHHHHHCCCCEEEE
T ss_conf 647689998578856999
No 140
>KOG2799 consensus
Probab=40.15 E-value=15 Score=17.42 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=17.9
Q ss_pred CCCCCCEEEEECCHHHH------HHHHHHHHHHHHCCCEEEEEEEEC
Q ss_conf 00147311100778999------999999999998498799995117
Q gi|254780696|r 237 IHAGGKAELTKLTKIDL------DICKRIGESLRERGLFFTGIDVIG 277 (316)
Q Consensus 237 l~~Gg~~~~~~lt~~~~------~i~~~~~~~L~~~gl~~~GiDiig 277 (316)
+-.||.+.....++.-+ +.-....+.. | -|.+-|+|+
T Consensus 317 ldVGg~Atve~v~eaf~litsd~kv~ailvnif---G-gi~rCDvia 359 (434)
T KOG2799 317 LDVGGGATVEQVREAFSLITSDKKVMAILVNIF---G-GIMRCDVIA 359 (434)
T ss_pred EEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHH---C-CEEECCCEE
T ss_conf 440798767789888888725804999999986---5-720033010
No 141
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=40.11 E-value=28 Score=15.62 Aligned_cols=42 Identities=19% Similarity=0.183 Sum_probs=27.4
Q ss_pred EEEEEECCHH-HCCCCCCCHHHHHHHHHHCCCEEEEEEHHHEE
Q ss_conf 1899709988-84847646799999999889889999541248
Q gi|254780696|r 6 NIAIQMNHIS-TVKVKEDSTFAIALEAQVRGYQIFHYTPDQLY 47 (316)
Q Consensus 6 kI~fimDpi~-~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~ 47 (316)
||+|+.+..- ..--.......|+++..++||+|.++.+..-.
T Consensus 1 kIlii~~~~~P~~GG~e~~~~~la~~L~~~G~~V~vit~~~~~ 43 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAARGHEVTVLTPGDGG 43 (374)
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 9899948779998819999999999999779989999607988
No 142
>PRK00654 glgA glycogen synthase; Provisional
Probab=39.86 E-value=29 Score=15.60 Aligned_cols=40 Identities=13% Similarity=0.007 Sum_probs=28.8
Q ss_pred CEEEEEEC---CHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHH
Q ss_conf 31899709---98884847646799999999889889999541
Q gi|254780696|r 5 RNIAIQMN---HISTVKVKEDSTFAIALEAQVRGYQIFHYTPD 44 (316)
Q Consensus 5 ~kI~fimD---pi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~ 44 (316)
|||+|+.- |+.+.=--.|-.-.|-++..++||+|.++.|.
T Consensus 1 MkIl~vs~E~~P~~KvGGLgdvv~~L~~aL~~~G~~V~Vi~P~ 43 (476)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAKLGHDVRVLLPG 43 (476)
T ss_pred CEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 9799998743875575749999999999999769959999479
No 143
>pfam03033 Glyco_transf_28 Glycosyltransferase family 28 N-terminal domain. The glycosyltransferase family 28 includes monogalactosyldiacylglycerol synthase (EC 2.4.1.46) and UDP-N-acetylglucosamine transferase (EC 2.4.1.-). This N-terminal domain contains the acceptor binding site and likely membrane association site. This family also contains a large number of proteins that probably have quite distinct activities.
Probab=38.95 E-value=23 Score=16.21 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=17.0
Q ss_pred HHHHHHHHHHCCCEEEEEEHHH
Q ss_conf 7999999998898899995412
Q gi|254780696|r 24 TFAIALEAQVRGYQIFHYTPDQ 45 (316)
Q Consensus 24 T~~Lm~eAq~RGheV~~~~~~d 45 (316)
-++|++|.++|||+|++....+
T Consensus 15 alala~~L~~~g~~v~igt~~~ 36 (136)
T pfam03033 15 AVALAWALRRRGHEVRLGTPPG 36 (136)
T ss_pred HHHHHHHHHHCCCEEEECCCCC
T ss_conf 9999999998599771215802
No 144
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=38.92 E-value=30 Score=15.50 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=29.0
Q ss_pred EEEEEECCHH-HCCCCCCCHHHHHHHHHHCCCEEEEEEHHHEEE
Q ss_conf 1899709988-848476467999999998898899995412489
Q gi|254780696|r 6 NIAIQMNHIS-TVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYM 48 (316)
Q Consensus 6 kI~fimDpi~-~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~~ 48 (316)
||+++.+..- .+---...+..|+++..++||+|.++.+..-.-
T Consensus 1 kIl~i~~~f~P~~GG~e~~~~~la~~L~~~Gh~V~v~t~~~~~~ 44 (364)
T cd03814 1 RIAIVTDTFLPQVNGVVRTLQRLVEHLRARGHEVLVIAPGPFRE 44 (364)
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 98999388899988499999999999997799899997899765
No 145
>KOG1401 consensus
Probab=38.13 E-value=31 Score=15.42 Aligned_cols=82 Identities=26% Similarity=0.440 Sum_probs=51.9
Q ss_pred HCCCCE--EECCHHHHHHHHHHHH----HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCC-----------
Q ss_conf 044310--0037245568888521----43311168854344687448871158899999840013340-----------
Q gi|254780696|r 136 LMPPTL--ISRDITQITRFYLEMK----DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLM----------- 198 (316)
Q Consensus 136 ~~P~T~--vt~~~~~~~~f~~~~~----~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii----------- 198 (316)
..|.+. ..+|..++.++++.|+ -||+-|..|.|| +..-++.+..-+....+++...+|
T Consensus 181 ~~p~v~~~~ynd~t~l~k~~e~~~~~IaAvIvEPiqGaGG-----~~p~~peFl~~l~k~C~~~~vl~I~DEV~tG~gR~ 255 (433)
T KOG1401 181 IAPDVVTAEYNDSTALEKLFESHKGEIAAVIVEPIQGAGG-----IIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRL 255 (433)
T ss_pred CCCCEEEECCCCHHHHHHHHHHCCCCEEEEEEECCCCCCC-----CCCCCHHHHHHHHHHHHHCCCEEEEEHHHHCCCCC
T ss_conf 7985353055889999999984788568999713457888-----65698899999999986159669960343176535
Q ss_pred ----EEECCCCCCCCCEEEE---EECCEEEEEE
Q ss_conf ----0210534456826999---9899886321
Q gi|254780696|r 199 ----IQSYLPQIRDGDKRIL---LLNGKPVGAV 224 (316)
Q Consensus 199 ----~Qefi~~~~~gD~Rv~---vi~g~~v~a~ 224 (316)
+|||+. +. -|+-.+ +-||=|+||+
T Consensus 256 g~~~a~e~~~-~~-PDI~t~aK~L~gGlPigA~ 286 (433)
T KOG1401 256 GYGWAQEYFG-VT-PDITTVAKPLGGGLPIGAT 286 (433)
T ss_pred CHHHHHHHHC-CC-CCEEEEHHHCCCCCEEEEE
T ss_conf 5277888858-69-7602310203688515788
No 146
>TIGR02104 pulA_typeI pullulanase, type I; InterPro: IPR011840 Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the entries in IPR011838 from INTERPRO and IPR011839 from INTERPRO but having a different domain architecture with shorter sequences. Members are called type I pullulanases ..
Probab=37.73 E-value=31 Score=15.38 Aligned_cols=153 Identities=17% Similarity=0.124 Sum_probs=87.4
Q ss_pred ECCHHHHHHCCCHHHHHHHH-HHCCC-CEEECCHHHHHHHHHHH-HHHHHHCCCCCCC--CCEEEECCCCCC------HH
Q ss_conf 11748875256503433454-30443-10003724556888852-1433111688543--446874488711------58
Q gi|254780696|r 115 VNNPFWIRNSPEKIFVTEFS-ELMPP-TLISRDITQITRFYLEM-KDIIIKPLYGNGG--TGVFRITLGDRN------FS 183 (316)
Q Consensus 115 iN~p~~i~~~~eKl~~~~~~-~~~P~-T~vt~~~~~~~~f~~~~-~~vViKPl~g~~G--~gV~~i~~~~~~------~~ 183 (316)
+|.-.|.-.--++.-+..+. ..-|+ ++=.++++++. ..|-| .++=+-|-.|..= +|=|+ .-.+++ ..
T Consensus 108 ~NG~~gavid~~~tnp~~w~~~~~P~a~WRl~~p~DAI-IYElHiRD~s~~~~SGv~~~~KGkYL-GL~E~gT~~~~G~~ 185 (655)
T TIGR02104 108 VNGKRGAVIDLEETNPEGWESDLRPEAKWRLENPEDAI-IYELHIRDFSIHPNSGVKNELKGKYL-GLTETGTKGPNGVS 185 (655)
T ss_pred CCCCEEEEECHHHCCCCCCCCCCCCCCEEECCCCCHHH-HHHHHHHCCCCCCCCCEECCCCCCCH-HHCCCCCCCCCCCC
T ss_conf 28854488734454877876687487313027831166-56653502567878872216663321-01015866888851
Q ss_pred HHHHHHHHHCCCCCCEEECCCCCCCCCEEE----EEECC--EEEEEEEEECCCCCCCCCCCCCCCEEEEECCHHHHHHHH
Q ss_conf 899999840013340021053445682699----99899--886321220456860000001473111007789999999
Q gi|254780696|r 184 SLIEMLFEKYPEPLMIQSYLPQIRDGDKRI----LLLNG--KPVGAVNRIPSEVDNRSNIHAGGKAELTKLTKIDLDICK 257 (316)
Q Consensus 184 ~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv----~vi~g--~~v~a~~R~~~~~~~r~Nl~~Gg~~~~~~lt~~~~~i~~ 257 (316)
.-++.+..-|-.+|=+|+.-+=. ..|-+= ---|. -|.- . ..++|++-|| |+++..+.+|+-.
T Consensus 186 TGl~y~keLGVTHVqLLP~fDf~-~~de~~~~Fe~~YNWGYDP~n--y-nvPEGSYsTd--------P~~P~~RI~ELKq 253 (655)
T TIGR02104 186 TGLDYLKELGVTHVQLLPVFDFA-SVDEEDPNFENAYNWGYDPLN--Y-NVPEGSYSTD--------PYDPATRILELKQ 253 (655)
T ss_pred HHHHHHHHCCCCEEEECCCCCCC-CCCCCCCCCCCCCCCCCCCCC--C-CCCCCCCCCC--------CCCCCCHHHHHHH
T ss_conf 04355543365356543411224-102667787322776647665--5-3777543678--------8877307678889
Q ss_pred HHHHHHHHCCCEEEEEEEECCEEEEE
Q ss_conf 99999998498799995117878898
Q gi|254780696|r 258 RIGESLRERGLFFTGIDVIGDYITEI 283 (316)
Q Consensus 258 ~~~~~L~~~gl~~~GiDiig~~i~Ev 283 (316)
.| +.|.++||... +|++.+.+-.+
T Consensus 254 mi-~~lH~~GirVI-mDVVYNH~y~~ 277 (655)
T TIGR02104 254 MI-QALHENGIRVI-MDVVYNHTYSR 277 (655)
T ss_pred HH-HHHHHCCCEEE-EEECCCCCCCC
T ss_conf 99-99986688799-85024760334
No 147
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type; InterPro: IPR011835 This family consists of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; GO: 0009011 starch synthase activity, 0009250 glucan biosynthetic process.
Probab=36.96 E-value=32 Score=15.30 Aligned_cols=47 Identities=11% Similarity=-0.001 Sum_probs=32.8
Q ss_pred CEEEEEEC---CHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHEEEECC
Q ss_conf 31899709---988848476467999999998898899995412489998
Q gi|254780696|r 5 RNIAIQMN---HISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDS 51 (316)
Q Consensus 5 ~kI~fimD---pi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g 51 (316)
|||+|+.- |+-+.===.|-.-+|-++.+++||+|.++-|.==.+...
T Consensus 1 M~vl~va~E~~P~~KtGGLaDV~~aLP~AL~~~G~~V~v~lP~Y~~~~~~ 50 (517)
T TIGR02095 1 MRVLFVAAEVAPFAKTGGLADVVGALPKALAKLGHDVRVLLPAYGSLEDE 50 (517)
T ss_pred CCEEEEECCCCCCEEECCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHH
T ss_conf 90789960346743445278998899999986698599974776552201
No 148
>COG4826 Serine protease inhibitor [Posttranslational modification, protein turnover, chaperones]
Probab=36.89 E-value=23 Score=16.28 Aligned_cols=70 Identities=19% Similarity=0.302 Sum_probs=49.0
Q ss_pred CCCCHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCC-CEEECCHHHHHHCCCHHHHHH----HHHHCCCCEEECC
Q ss_conf 435210063668832886224799999999862358-504117488752565034334----5430443100037
Q gi|254780696|r 76 KIIDLSQMDVILIRQDPPFNMHYITSTYLLEKINPE-TLIVNNPFWIRNSPEKIFVTE----FSELMPPTLISRD 145 (316)
Q Consensus 76 ~~~~L~~fD~i~iR~dPp~d~~yi~~~~~Le~~~~~-~~viN~p~~i~~~~eKl~~~~----~~~~~P~T~vt~~ 145 (316)
....|...+++|+.+|=|+...|+..++-.-.++-. +-+.|.|.+-++..||.---+ ..+++|.-.++.|
T Consensus 118 ~~y~le~AnalWvqedyplke~yv~n~r~yy~aevtnlDF~~~p~~s~dtINkWvEekT~gkIkdlVp~~~i~~d 192 (410)
T COG4826 118 DSYELETANALWVQEDYPLKENYVNNVRNYYDAEVTNLDFVNKPDASRDTINKWVEEKTNGKIKDLVPEDYIGPD 192 (410)
T ss_pred CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCC
T ss_conf 421134456588746887788899877766422113303236826789999999987651657643876666876
No 149
>TIGR02628 fuculo_kin_coli L-fuculokinase; InterPro: IPR013450 Proteins in this entry are L-fuculokinases from the clade that includes the Escherichia coli enzyme P11553 from SWISSPROT. They catalyze the second step in fucose catabolism and belong to the FGGY family of carbohydrate kinases. These enzymes are encoded by the kinase (K) gene of the fucose (fuc) operon.; GO: 0008737 L-fuculokinase activity, 0005975 carbohydrate metabolic process.
Probab=36.34 E-value=30 Score=15.47 Aligned_cols=59 Identities=20% Similarity=0.397 Sum_probs=29.9
Q ss_pred HHHHHCCCC-------CCC-CCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCC-CCEEEEEECCE
Q ss_conf 433111688-------543-446874488711588999998400133400210534456-82699998998
Q gi|254780696|r 158 DIIIKPLYG-------NGG-TGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRD-GDKRILLLNGK 219 (316)
Q Consensus 158 ~vViKPl~g-------~~G-~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~-gD~Rv~vi~g~ 219 (316)
.||.||-+- .|| .|+-+-...-+-+.+.+|-++++.++.+ +||+.+.+ .|..+++|||=
T Consensus 344 gvvfkPNf~~~~~~~gqg~i~Gl~l~ttRG~iyraalegl~~qLk~~l---~~L~~~~qf~a~~l~~VGGG 411 (473)
T TIGR02628 344 GVVFKPNFETDLDSLGQGAIEGLSLFTTRGEIYRAALEGLAKQLKRRL---DVLEQVSQFKAKELVVVGGG 411 (473)
T ss_pred CCEECCCCCCCHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHCCCCCEEEECCC
T ss_conf 024577622043330654301102203357899999999999987423---57877631137756896178
No 150
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=36.14 E-value=33 Score=15.22 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=17.7
Q ss_pred HHHHHHHHHHCCCEEEEEEHH
Q ss_conf 799999999889889999541
Q gi|254780696|r 24 TFAIALEAQVRGYQIFHYTPD 44 (316)
Q Consensus 24 T~~Lm~eAq~RGheV~~~~~~ 44 (316)
.+++++|.++|||+|.|+...
T Consensus 16 alala~~L~~~g~~V~~i~~~ 36 (350)
T cd03785 16 ALALAEELRERGAEVLFLGTK 36 (350)
T ss_pred HHHHHHHHHHCCCEEEEEECC
T ss_conf 999999999787989999878
No 151
>pfam09757 Arb2 Arb2 domain. A second fission yeast Argonaute complex (Argonaute siRNA chaperone, ARC) that contains two previously uncharacterized proteins, Arb1 and Arb2, both of which are required for histone H3 Lys9 (H3-K9) methylation, heterochromatin assembly and siRNA generation. This family includes a region found in Arb2 and the Hda1 protein.
Probab=35.67 E-value=33 Score=15.17 Aligned_cols=10 Identities=20% Similarity=0.720 Sum_probs=4.5
Q ss_pred EEEEECCEEE
Q ss_conf 9999899886
Q gi|254780696|r 212 RILLLNGKPV 221 (316)
Q Consensus 212 Rv~vi~g~~v 221 (316)
.++++-|.+.
T Consensus 76 llV~ihd~~~ 85 (156)
T pfam09757 76 LLVIIHGSPE 85 (156)
T ss_pred EEEEECCCCC
T ss_conf 7999817986
No 152
>KOG1436 consensus
Probab=35.40 E-value=17 Score=17.03 Aligned_cols=30 Identities=20% Similarity=0.080 Sum_probs=13.3
Q ss_pred EEECCHHHCCCCCCCHHHHHHHHHHCCCEEE
Q ss_conf 9709988848476467999999998898899
Q gi|254780696|r 9 IQMNHISTVKVKEDSTFAIALEAQVRGYQIF 39 (316)
Q Consensus 9 fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~ 39 (316)
.+|.|...+-... .|-+++--|-.+|+-..
T Consensus 46 ~~mp~~~~lld~E-~sHrlAv~aas~gl~Pr 75 (398)
T KOG1436 46 IVMPPFHALLDPE-FSHRLAVLAASWGLLPR 75 (398)
T ss_pred EECCHHHHHCCHH-HHHHHHHHHHHHCCCCH
T ss_conf 3124166407977-77799999977177751
No 153
>PRK13337 putative lipid kinase; Reviewed
Probab=35.28 E-value=34 Score=15.13 Aligned_cols=40 Identities=13% Similarity=0.110 Sum_probs=27.3
Q ss_pred CCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEE
Q ss_conf 5331899709988848476467999999998898899995
Q gi|254780696|r 3 KIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYT 42 (316)
Q Consensus 3 k~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~ 42 (316)
||+|++|+.||.+.-.-....--.+....+++|+++-++.
T Consensus 1 mmkr~~~I~NP~sG~g~~~~~~~~i~~~l~~~g~~~~~~~ 40 (305)
T PRK13337 1 MMKRARIIYNPTSGRELFKKNLPDVLQKLEQAGYETSAHA 40 (305)
T ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 9845999999756886467789999999998799699998
No 154
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=35.26 E-value=28 Score=15.64 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=18.8
Q ss_pred CCCCCCCHHHHHHHHHHCCCEEEEE
Q ss_conf 4847646799999999889889999
Q gi|254780696|r 17 VKVKEDSTFAIALEAQVRGYQIFHY 41 (316)
Q Consensus 17 i~~~~DTT~~Lm~eAq~RGheV~~~ 41 (316)
+.=.|||+++|.++ ++.||++-++
T Consensus 6 ~SGGKDS~lAl~~a-~~~g~~v~~L 29 (194)
T cd01994 6 ISGGKDSCYALYRA-LEEGHEVVAL 29 (194)
T ss_pred ECCCHHHHHHHHHH-HHCCCEEEEE
T ss_conf 77859999999999-9869925999
No 155
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=35.21 E-value=29 Score=15.60 Aligned_cols=21 Identities=5% Similarity=0.056 Sum_probs=9.8
Q ss_pred CEEEEEECCHHHCCCCCCCHHHHHH
Q ss_conf 3189970998884847646799999
Q gi|254780696|r 5 RNIAIQMNHISTVKVKEDSTFAIAL 29 (316)
Q Consensus 5 ~kI~fimDpi~~i~~~~DTT~~Lm~ 29 (316)
++++|.+|| | ..++-++.+++
T Consensus 1 rp~l~~l~p-E---~aH~~~~~~l~ 21 (327)
T cd04738 1 RPLLFLLDP-E---TAHRLAIRALK 21 (327)
T ss_pred CCCCCCCCH-H---HHHHHHHHHHH
T ss_conf 980114997-9---99999999998
No 156
>COG1798 DPH5 Diphthamide biosynthesis methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=34.74 E-value=34 Score=15.08 Aligned_cols=55 Identities=15% Similarity=0.141 Sum_probs=27.9
Q ss_pred CHHHCCEEEEEC-CCCCCHHHHHHHHHHHHHCCC--CEEECCHHHHHHCCCH--HHHHHHHH
Q ss_conf 210063668832-886224799999999862358--5041174887525650--34334543
Q gi|254780696|r 79 DLSQMDVILIRQ-DPPFNMHYITSTYLLEKINPE--TLIVNNPFWIRNSPEK--IFVTEFSE 135 (316)
Q Consensus 79 ~L~~fD~i~iR~-dPp~d~~yi~~~~~Le~~~~~--~~viN~p~~i~~~~eK--l~~~~~~~ 135 (316)
...+.|+.|.=- ||=+-..- +.+ .++..+.| ++||++++.+.-+.-| |...+|-.
T Consensus 72 ~a~~~~Vall~~GDpmvATTH-~~L-~~~A~~~Gi~v~vIh~~Si~~Aa~g~tGL~~YkFG~ 131 (260)
T COG1798 72 RAKDKDVALLVAGDPMVATTH-VDL-RIEAKRRGIEVRVIHGASIINAAIGLTGLQNYKFGK 131 (260)
T ss_pred HHHCCCEEEEECCCCCEEHHH-HHH-HHHHHHCCCCEEEECCCHHHHHHHHHHHHHEECCCC
T ss_conf 873288799935986300118-999-999997698279974618999886452420132489
No 157
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G; InterPro: IPR010228 This entry represents the G subunit (one of 14 subunits, A to N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This family does not contain related subunits from formate dehydrogenase complexes.; GO: 0016651 oxidoreductase activity acting on NADH or NADPH, 0051536 iron-sulfur cluster binding.
Probab=34.48 E-value=35 Score=15.05 Aligned_cols=24 Identities=13% Similarity=0.141 Sum_probs=10.0
Q ss_pred HHHHHHHCCCEE-EEEEHHHEEEEC
Q ss_conf 999999889889-999541248999
Q gi|254780696|r 27 IALEAQVRGYQI-FHYTPDQLYMRD 50 (316)
Q Consensus 27 Lm~eAq~RGheV-~~~~~~dL~~~~ 50 (316)
+|+||.+-|.+| |+|....|++-+
T Consensus 16 vlqAc~~~G~~IPrFC~H~~L~~AG 40 (715)
T TIGR01973 16 VLQACLKAGIEIPRFCYHEKLSIAG 40 (715)
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCHH
T ss_conf 8999996589898542366666200
No 158
>PRK06932 glycerate dehydrogenase; Provisional
Probab=34.21 E-value=19 Score=16.85 Aligned_cols=75 Identities=13% Similarity=0.132 Sum_probs=44.1
Q ss_pred CCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEECC-------EEEE-----EE-CCCCHHHHHHH
Q ss_conf 56860000001473111007789999999999999984987999951178-------7889-----83-68830378899
Q gi|254780696|r 229 SEVDNRSNIHAGGKAELTKLTKIDLDICKRIGESLRERGLFFTGIDVIGD-------YITE-----IN-VTSPTCIREIH 295 (316)
Q Consensus 229 ~~~~~r~Nl~~Gg~~~~~~lt~~~~~i~~~~~~~L~~~gl~~~GiDiig~-------~i~E-----vN-vtsP~g~~~~~ 295 (316)
+.+.+.-|.++|+-... ..+...|++.-+..||+|+... -+.+ =| +.+| .+-...
T Consensus 224 K~~a~lIN~aRG~iVde-----------~aL~~AL~~g~I~gA~lDV~~~EP~~~~~pl~~~~~~~~NvilTP-Hia~~T 291 (314)
T PRK06932 224 KPTAFLINTGRGPLVDE-----------QALVDALETGHIAGAALDVLVKEPPEKDNPLIQAAKTLPNLIITP-HIAWAS 291 (314)
T ss_pred CCCCEEEECCCCCCCCH-----------HHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHCCCCCEEECC-CCCCCH
T ss_conf 88719998267554499-----------999999982990289972799999988984567636799899878-322257
Q ss_pred HHCCCCHHHHHHHHHHHHHC
Q ss_conf 75199989999999988633
Q gi|254780696|r 296 RNGGENVASLFWDGIEKIKE 315 (316)
Q Consensus 296 ~~~~~~i~~~i~d~ie~~~~ 315 (316)
..+-.+++...++.+++..+
T Consensus 292 ~ea~~~~~~~~~~Ni~~fl~ 311 (314)
T PRK06932 292 DSAVTTLVNKVMQNIEEFVQ 311 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999997
No 159
>PRK06274 indolepyruvate oxidoreductase subunit B; Reviewed
Probab=33.86 E-value=36 Score=14.98 Aligned_cols=78 Identities=14% Similarity=0.179 Sum_probs=50.1
Q ss_pred HHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHHHCCEEEEECCCCCCHHHHHHHH
Q ss_conf 79999999988988999954124899989999999999807774126504644352100636688328862247999999
Q gi|254780696|r 24 TFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQMDVILIRQDPPFNMHYITSTY 103 (316)
Q Consensus 24 T~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~~fD~i~iR~dPp~d~~yi~~~~ 103 (316)
+-.|..+|...|+.+...+...++-++|.+.++. ++.+.. + +-.++-.+.|+++- ++.. ....
T Consensus 19 ~~iLa~Aa~~~G~~v~~~~~~G~~qRGG~v~s~v---ri~~~i---~----sp~v~~g~aDlli~-----~~~~--~~~~ 81 (195)
T PRK06274 19 SRILANAAMNEGFHVNTAETLGMSQREGSVISHL---RFGDEI---S----SPLIPEGKADLLLG-----LEPA--EVAR 81 (195)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCHHCCCCEEEEE---EECCCC---C----CCCCCCCCCCEEEE-----ECHH--HHHH
T ss_conf 9999999997599889854126121288348999---977854---7----77768999878999-----4799--9988
Q ss_pred HHHHHCCCC-EEECCH
Q ss_conf 998623585-041174
Q gi|254780696|r 104 LLEKINPET-LIVNNP 118 (316)
Q Consensus 104 ~Le~~~~~~-~viN~p 118 (316)
.+..++.++ .|+|+.
T Consensus 82 ~~~~lk~~g~~v~n~~ 97 (195)
T PRK06274 82 NLHFLKKGGKIIVNSK 97 (195)
T ss_pred HHHCCCCCEEEEEECC
T ss_conf 7631089849999698
No 160
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=33.43 E-value=35 Score=15.04 Aligned_cols=21 Identities=19% Similarity=0.128 Sum_probs=15.7
Q ss_pred CHHHHHHHHHHCCCEEEEEEH
Q ss_conf 679999999988988999954
Q gi|254780696|r 23 STFAIALEAQVRGYQIFHYTP 43 (316)
Q Consensus 23 TT~~Lm~eAq~RGheV~~~~~ 43 (316)
.|+.=+.+.++.|.|+-=+..
T Consensus 43 at~~Qi~~L~~aGceiVRvav 63 (367)
T PRK00366 43 ATVAQIKRLARAGCEIVRVAV 63 (367)
T ss_pred HHHHHHHHHHHCCCCEEEECC
T ss_conf 999999999984999899845
No 161
>PRK06847 hypothetical protein; Provisional
Probab=33.41 E-value=36 Score=14.94 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=30.2
Q ss_pred CCCCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHE
Q ss_conf 9653318997099888484764679999999988988999954124
Q gi|254780696|r 1 MKKIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQL 46 (316)
Q Consensus 1 mkk~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL 46 (316)
|..|+||+++.==+..+ .++....++|++|-+++...-
T Consensus 1 m~~~kkV~IVGaG~aGL--------~lA~~L~~~Gi~v~V~E~~~~ 38 (375)
T PRK06847 1 MGAVKKVLIVGGGIGGM--------SAAIALRKAGISVDLVEIDPE 38 (375)
T ss_pred CCCCCEEEEECCCHHHH--------HHHHHHHHCCCCEEEEECCCC
T ss_conf 98998799999668999--------999999967999999908999
No 162
>pfam03602 Cons_hypoth95 Conserved hypothetical protein 95.
Probab=33.17 E-value=33 Score=15.22 Aligned_cols=21 Identities=33% Similarity=0.393 Sum_probs=12.6
Q ss_pred HHHHHHHHHHCCCE-EEEEEHH
Q ss_conf 79999999988988-9999541
Q gi|254780696|r 24 TFAIALEAQVRGYQ-IFHYTPD 44 (316)
Q Consensus 24 T~~Lm~eAq~RGhe-V~~~~~~ 44 (316)
|=+|..||..||-+ |...+.+
T Consensus 54 SGslglEAlSRGA~~v~fvE~~ 75 (181)
T pfam03602 54 SGALGLEALSRGASSVVFVEKD 75 (181)
T ss_pred CCHHHHHHHHCCCCEEEEEECC
T ss_conf 2698999997699889999699
No 163
>pfam03446 NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase. The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold.
Probab=32.86 E-value=37 Score=14.88 Aligned_cols=33 Identities=18% Similarity=0.163 Sum_probs=23.3
Q ss_pred CCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHH
Q ss_conf 33189970998884847646799999999889889999541
Q gi|254780696|r 4 IRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPD 44 (316)
Q Consensus 4 ~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~ 44 (316)
||||+|+.== --=..|.+...++||+|+.++.+
T Consensus 1 M~~Ig~IGlG--------~MG~~ma~~L~~~g~~v~v~d~~ 33 (163)
T pfam03446 1 MAKIGFIGLG--------VMGSPMALNLLKAGYTVTVYNRT 33 (163)
T ss_pred CCEEEEEEEH--------HHHHHHHHHHHHCCCEEEEEECC
T ss_conf 9889998367--------98999999999779969999797
No 164
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=32.74 E-value=21 Score=16.48 Aligned_cols=73 Identities=16% Similarity=0.224 Sum_probs=44.2
Q ss_pred CCCCCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHHHC--CEEEEECCCCCC
Q ss_conf 847646799999999889889999541248999899999999998077741265046443521006--366883288622
Q gi|254780696|r 18 KVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQM--DVILIRQDPPFN 95 (316)
Q Consensus 18 ~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~~f--D~i~iR~dPp~d 95 (316)
+|++=|-+.+-.++++.|-.+.++++.+.++..|+.. . + .-..|+.+ |++.+|. ++
T Consensus 53 epSTRTR~SFe~A~~~LGg~~i~l~~~~s~~~kgEsi---------------~---D-Tarvls~y~~D~iv~R~---~~ 110 (304)
T PRK00856 53 EPSTRTRLSFELAAKRLGADVINFSASTSSVSKGETL---------------A---D-TIRTLSAMGADAIVIRH---PQ 110 (304)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCH---------------H---H-HHHHHHHHCCCEEEEEC---CC
T ss_conf 5874057889999983896698706664655689789---------------9---9-99999972797999916---86
Q ss_pred HHHHHHHHHHHHHC-CCCEEECC
Q ss_conf 47999999998623-58504117
Q gi|254780696|r 96 MHYITSTYLLEKIN-PETLIVNN 117 (316)
Q Consensus 96 ~~yi~~~~~Le~~~-~~~~viN~ 117 (316)
...+ .+.++ ..+.|||-
T Consensus 111 ~~~~-----~~~a~~s~vPVINa 128 (304)
T PRK00856 111 SGAA-----RLLAEKVNVPVINA 128 (304)
T ss_pred HHHH-----HHHHHHCCCCEEEC
T ss_conf 5699-----99998689988979
No 165
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=32.51 E-value=37 Score=14.84 Aligned_cols=39 Identities=21% Similarity=0.073 Sum_probs=25.6
Q ss_pred EEEEEECCHH-HCCCCCCCHHHHHHHHHHCCCEEEEEEHH
Q ss_conf 1899709988-84847646799999999889889999541
Q gi|254780696|r 6 NIAIQMNHIS-TVKVKEDSTFAIALEAQVRGYQIFHYTPD 44 (316)
Q Consensus 6 kI~fimDpi~-~i~~~~DTT~~Lm~eAq~RGheV~~~~~~ 44 (316)
||+|+.+-.- ...-....+..|.++..++||+|.++.+.
T Consensus 1 KIlii~~~fpP~~gG~~~~~~~la~~L~~~Gh~V~v~t~~ 40 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGS 40 (394)
T ss_pred CEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 9899917778989829999999999999779979999547
No 166
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=32.46 E-value=23 Score=16.26 Aligned_cols=73 Identities=19% Similarity=0.168 Sum_probs=46.2
Q ss_pred CCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEEC--C----EEEE-EE-CCCCH-H--HHHHHHH
Q ss_conf 5686000000147311100778999999999999998498799995117--8----7889-83-68830-3--7889975
Q gi|254780696|r 229 SEVDNRSNIHAGGKAELTKLTKIDLDICKRIGESLRERGLFFTGIDVIG--D----YITE-IN-VTSPT-C--IREIHRN 297 (316)
Q Consensus 229 ~~~~~r~Nl~~Gg~~~~~~lt~~~~~i~~~~~~~L~~~gl~~~GiDiig--~----~i~E-vN-vtsP~-g--~~~~~~~ 297 (316)
+.|.+.-|.++||-... ..+.+.|++.-+.-||+|+.. + -+.+ =| +..|- | -.|.+..
T Consensus 219 K~ga~lIN~aRG~iVde-----------~aL~~AL~~g~i~gAalDVf~~EP~~~~pL~~~~nvi~TPHiGasT~EAq~~ 287 (524)
T PRK13581 219 KPGVRIINCARGGIIDE-----------AALAEALKSGKVAGAALDVFEKEPATDSPLFGLPNVIVTPHLGASTEEAQEN 287 (524)
T ss_pred CCCCEEEECCCCCEECH-----------HHHHHHHHCCCCCEEEEECCCCCCCCCHHHHCCCCEEECCCCCCCHHHHHHH
T ss_conf 89986997488760589-----------9999999649976599724677899975661799888878787655999999
Q ss_pred CCCCHHHHHHHHHHH
Q ss_conf 199989999999988
Q gi|254780696|r 298 GGENVASLFWDGIEK 312 (316)
Q Consensus 298 ~~~~i~~~i~d~ie~ 312 (316)
.++.+|.+++++++.
T Consensus 288 va~~~a~~v~~~l~~ 302 (524)
T PRK13581 288 VAIQVAEQVIDALLG 302 (524)
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 999999999999758
No 167
>pfam11379 DUF3182 Protein of unknown function (DUF3182). This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=32.42 E-value=38 Score=14.83 Aligned_cols=122 Identities=13% Similarity=0.083 Sum_probs=65.2
Q ss_pred CCCCEEECCHHHHHHHHHH---HHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHC--CCCCCEEECCCCCCCCCE
Q ss_conf 4431000372455688885---21433111688543446874488711588999998400--133400210534456826
Q gi|254780696|r 137 MPPTLISRDITQITRFYLE---MKDIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKY--PEPLMIQSYLPQIRDGDK 211 (316)
Q Consensus 137 ~P~T~vt~~~~~~~~f~~~---~~~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~--~~~ii~Qefi~~~~~gD~ 211 (316)
+-+-+-.-|.++++..-.. .|+|=+||..+.||+|=.++.. ...+...+..+.... ..-+++.+=|..+.-.-+
T Consensus 114 vLpG~tvFs~~DAr~Aa~~Ll~~G~VRlK~~~a~gG~GQ~vv~d-~~~Le~~L~a~~~~~l~~~GlVLE~~L~~~~TySV 192 (355)
T pfam11379 114 VLPGYTVFSLEDARDAAARLLKGGPVRLKPPRACGGRGQQVVAD-ADALDAALAALDDRELAAHGLVLEEDLDQPTTYSV 192 (355)
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCEEECC-HHHHHHHHHCCCHHHHHHCCEEEECCCCCCCEEEE
T ss_conf 03873222678899999998537972550562237888557438-99999998727988898668687402577722555
Q ss_pred EEEEECCEEEEEEEEECCCCCCCCC---------CCCCCCE--EEEECCHHHHHHHHHH
Q ss_conf 9999899886321220456860000---------0014731--1100778999999999
Q gi|254780696|r 212 RILLLNGKPVGAVNRIPSEVDNRSN---------IHAGGKA--ELTKLTKIDLDICKRI 259 (316)
Q Consensus 212 Rv~vi~g~~v~a~~R~~~~~~~r~N---------l~~Gg~~--~~~~lt~~~~~i~~~~ 259 (316)
--+.++|-.+..+-.+...-|-..+ +-+||-- -..++++..+...+++
T Consensus 193 Gqv~v~g~~~SY~GtQ~lT~dn~G~~VYGGSdL~vvRGg~~aLl~l~lp~~~r~AV~qA 251 (355)
T pfam11379 193 GQVRVAGLLASYYGTQYLTRDNHGEEVYGGSDLVVVRGGYDALLALDLPPLVRLAVEQA 251 (355)
T ss_pred EEEEECCEEEEEEEEEEECCCCCCCEEECCCEEEEEECCHHHHHCCCCCHHHHHHHHHH
T ss_conf 55999889988852654025899887355743799728799996178987999999999
No 168
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type; InterPro: IPR004635 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. This group of sequences represent both long and short forms of the bacterial SppA and homologs found in the archaea and plants. Signal peptides of secretory proteins seem to serve at least two important biological functions. First, they are required for protein targeting to and translocation across membranes, such as the eubacterial plasma membrane and the endoplasmic reticular membrane of eukaryotes. Second, in addition to their role as determinants for protein targeting and translocation, certain signal peptides have a signaling function. During or shortly after pre-protein translocation, the signal peptide is removed by signal peptidases. The integral membrane protein, SppA (protease IV), of Escherichia coli was shown experimentally to degrade signal peptides. The member of this family from Bacillus subtilis has only been shown to be required for efficient processing of pre-proteins under conditions of hyper-secretion . ; GO: 0008233 peptidase activity, 0006508 proteolysis.
Probab=32.32 E-value=38 Score=14.82 Aligned_cols=13 Identities=23% Similarity=0.675 Sum_probs=6.8
Q ss_pred HHCCEEEEECCCC
Q ss_conf 0063668832886
Q gi|254780696|r 81 SQMDVILIRQDPP 93 (316)
Q Consensus 81 ~~fD~i~iR~dPp 93 (316)
...-+|++|.|.|
T Consensus 42 ~~~ka~~l~i~SP 54 (224)
T TIGR00706 42 KSIKALVLRIDSP 54 (224)
T ss_pred CCEEEEEEEEECC
T ss_conf 9700699986379
No 169
>TIGR00095 TIGR00095 putative methyltransferase; InterPro: IPR004398 This is a family of conserved hypothetical proteins, which includes a putative methylase..
Probab=32.04 E-value=31 Score=15.36 Aligned_cols=19 Identities=26% Similarity=0.312 Sum_probs=12.6
Q ss_pred HHHHHHHHHHCCCEEEEEE
Q ss_conf 7999999998898899995
Q gi|254780696|r 24 TFAIALEAQVRGYQIFHYT 42 (316)
Q Consensus 24 T~~Lm~eAq~RGheV~~~~ 42 (316)
|=+|-.||..||.+--++-
T Consensus 66 sG~LG~EALSRgA~~~~f~ 84 (210)
T TIGR00095 66 SGSLGLEALSRGAKSAVFV 84 (210)
T ss_pred CHHHHHHHHHHCCCEEEEE
T ss_conf 4465376640141623787
No 170
>PRK00861 putative lipid kinase; Reviewed
Probab=30.99 E-value=40 Score=14.68 Aligned_cols=38 Identities=11% Similarity=0.107 Sum_probs=25.6
Q ss_pred CCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEE
Q ss_conf 533189970998884847646799999999889889999
Q gi|254780696|r 3 KIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHY 41 (316)
Q Consensus 3 k~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~ 41 (316)
|++|++|+.||.+.= -+.......++++.++++++.+.
T Consensus 1 M~kr~~~IvNP~aG~-g~~~~~~~~i~~~l~~~~~~~v~ 38 (296)
T PRK00861 1 MTRSACLIFNPVAGQ-GNPEVDLALIRAILQPEMDLDIY 38 (296)
T ss_pred CCEEEEEEECCCCCC-CCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 970799999867899-86465799999999729968999
No 171
>pfam09886 DUF2113 Uncharacterized protein conserved in archaea (DUF2113). This domain, found in various hypothetical archaeal proteins, has no known function.
Probab=30.94 E-value=40 Score=14.68 Aligned_cols=115 Identities=18% Similarity=0.234 Sum_probs=66.7
Q ss_pred HHHHCCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCH-HHHHHHHHHHCCCCCCEEE--CCCCC-CC
Q ss_conf 54304431000372455688885214331116885434468744887115-8899999840013340021--05344-56
Q gi|254780696|r 133 FSELMPPTLISRDITQITRFYLEMKDIIIKPLYGNGGTGVFRITLGDRNF-SSLIEMLFEKYPEPLMIQS--YLPQI-RD 208 (316)
Q Consensus 133 ~~~~~P~T~vt~~~~~~~~f~~~~~~vViKPl~g~~G~gV~~i~~~~~~~-~~~~e~~~~~~~~~ii~Qe--fi~~~-~~ 208 (316)
+++.+++.+=.+|..++ ..+ .+.+++++.-.++++ ..++..++.+|....+-|+ |-=.+ ..
T Consensus 50 l~r~~~~~I~l~DvA~v----------~~~-----~~~~~~~l~I~dEtYlp~lL~~LW~kyGr~~V~QPdR~~I~i~~~ 114 (189)
T pfam09886 50 LLRKTSRPIKLGDVADV----------EKD-----REKGEIKLKITDETYLPDLLKKLWEKYGRDNVDQPDRFEIIIDSD 114 (189)
T ss_pred EECCCCCCEEEEEEEEE----------EEC-----CCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCC
T ss_conf 72578873684620104----------531-----777659999624212799999999984755556888559994588
Q ss_pred CCE-----EEEEECC------EEEEEEEEECCCCCCCC--CCCCCCCE----EEEECCHHHHHHHHHHHHHH
Q ss_conf 826-----9999899------88632122045686000--00014731----11007789999999999999
Q gi|254780696|r 209 GDK-----RILLLNG------KPVGAVNRIPSEVDNRS--NIHAGGKA----ELTKLTKIDLDICKRIGESL 263 (316)
Q Consensus 209 gD~-----Rv~vi~g------~~v~a~~R~~~~~~~r~--Nl~~Gg~~----~~~~lt~~~~~i~~~~~~~L 263 (316)
.|. ...|.|- +++-++.|+.++| ||- |...|+.. +--.+.+++.+.|.+....|
T Consensus 115 ~~~~~~l~dmvV~Dp~~~l~~~v~da~~rI~PEG-fRVr~~~~~~~~~~~vASE~~i~~ewi~~a~~~~~el 185 (189)
T pfam09886 115 VDLAKELEDLVVHDPSKDLKKRVYDALIRIAPEG-FRVRRHAYRGNSFVFVASEETLKDEWIEEAEELIEEL 185 (189)
T ss_pred CCHHCCHHHEEEECCHHHHHHHHHHHHHHHCCCC-EEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 4210030100787847889999999998758774-0887100468769999788988889999999999998
No 172
>pfam01558 POR Pyruvate ferredoxin/flavodoxin oxidoreductase. This family includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited.
Probab=30.75 E-value=40 Score=14.65 Aligned_cols=79 Identities=13% Similarity=0.209 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHHHCCEEEEECCCCCCHHHHHHH
Q ss_conf 67999999998898899995412489998999999999980777412650464435210063668832886224799999
Q gi|254780696|r 23 STFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQMDVILIRQDPPFNMHYITST 102 (316)
Q Consensus 23 TT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~~fD~i~iR~dPp~d~~yi~~~ 102 (316)
++-.|+.++.+.|+.++.+..-....++|.+++.. ++.+.+. . ...+..+.|+++. +|...+.
T Consensus 8 ~g~ila~a~~~~G~~v~~~~~ygs~~RGG~~~~~v---ris~~~i--~-----~~~~~~~~D~lv~-----~~~~~~~-- 70 (127)
T pfam01558 8 AGKILAKAAAREGYYVQATPEYGSEIRGGPVVSHI---RISDEPI--V-----PSPPVGEADLLVA-----LDPETLD-- 70 (127)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCHHHHCCCEEEEE---EEECCEE--C-----CCCCCCCCCEEEE-----ECHHHHH--
T ss_conf 99999999998599788742669888289659999---9948460--2-----5666665528999-----2899999--
Q ss_pred HHHHHHCCCCEEECCH
Q ss_conf 9998623585041174
Q gi|254780696|r 103 YLLEKINPETLIVNNP 118 (316)
Q Consensus 103 ~~Le~~~~~~~viN~p 118 (316)
..++.+..++.+||..
T Consensus 71 ~~~~~l~~~g~iiN~v 86 (127)
T pfam01558 71 RHLDGLKPGGIIINTV 86 (127)
T ss_pred HHHHCCCCCCEEEEHH
T ss_conf 9970629793999639
No 173
>TIGR00973 leuA_bact 2-isopropylmalate synthase; InterPro: IPR005671 The branched-chain amino acids are synthesised by a common pathway that leads from pyruvate and alpha-ketobutyrate to valine and isoleucine, and a branch that leads from the immediate precursor of valine, alpha-ketoisovalerate, to leucine . This pathway operates in archaea, bacteria, fungi and plants, but not mammals, making the enzymes suitable targets for the development of novel antibiotics and herbicides. Isopropylmalate synthase is the enzyme responsible for the the first committed step in the leucine branch of this biosynthetic pathway, the conversion of alpha-ketoisovalerate to alpha-isopropylmalate. It is either dimeric or tetrameric, depending on the organism, with a monomer molecular mass of 60-70 kDa, a dependence on divalent metal ions for activity, and an alkaline pH optimum , , , . Like many other biosynthetic enzymes it is subject to feedback inhibition by the end product of the pathway, leucine. This entry represents the isopropylmalate synthase most commonly found in bacteria. A related form of this enzyme is found mainly in eukaryotes and some other bacteria (IPR005668 from INTERPRO). A homologous family in archaea may represent isozymes and/or related enzymes (IPR005675 from INTERPRO). ; GO: 0003852 2-isopropylmalate synthase activity, 0009098 leucine biosynthetic process.
Probab=30.74 E-value=40 Score=14.65 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=10.7
Q ss_pred EEEEECCCCHHHHHHHHHCCCCHHHHHHH
Q ss_conf 88983688303788997519998999999
Q gi|254780696|r 280 ITEINVTSPTCIREIHRNGGENVASLFWD 308 (316)
Q Consensus 280 i~EvNvtsP~g~~~~~~~~~~~i~~~i~d 308 (316)
++++| | ...+|.-++..|++
T Consensus 484 ~~~~~-----G----~~~~G~G~~TDIve 503 (514)
T TIGR00973 484 VLRHN-----G----RKYSGRGVATDIVE 503 (514)
T ss_pred EEEEC-----C----EEEECCCHHHHHHH
T ss_conf 99986-----8----67741200131999
No 174
>pfam04551 GcpE GcpE protein. In a variety of organisms, including plants and several eubacteria, isoprenoids are synthesized by the mevalonate-independent 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway. Although different enzymes of this pathway have been described, the terminal biosynthetic steps of the MEP pathway have not been fully elucidated. GcpE gene of Escherichia coli is involved in this pathway.
Probab=30.30 E-value=35 Score=14.99 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=16.7
Q ss_pred CCHHHHHHHHHHCCCEEEEEEHH
Q ss_conf 46799999999889889999541
Q gi|254780696|r 22 DSTFAIALEAQVRGYQIFHYTPD 44 (316)
Q Consensus 22 DTT~~Lm~eAq~RGheV~~~~~~ 44 (316)
+.|+.=+.+..+-|.|+-=+...
T Consensus 31 ~atv~Qi~~L~~aGceiVRvavp 53 (345)
T pfam04551 31 EATVAQIKRLEEAGCDIVRVAVP 53 (345)
T ss_pred HHHHHHHHHHHHCCCCEEEECCC
T ss_conf 99999999999859998998879
No 175
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=30.14 E-value=41 Score=14.59 Aligned_cols=32 Identities=16% Similarity=0.117 Sum_probs=21.8
Q ss_pred EECCCCHHH--HHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 836883037--88997519998999999998863
Q gi|254780696|r 283 INVTSPTCI--REIHRNGGENVASLFWDGIEKIK 314 (316)
Q Consensus 283 vNvtsP~g~--~~~~~~~~~~i~~~i~d~ie~~~ 314 (316)
=+||||+|. .++..+-.-.+-..+.+.+++..
T Consensus 224 ~~VtSPGGtTiagl~~le~~g~~~~v~~av~aa~ 257 (266)
T COG0345 224 DQVTSPGGTTIAGLRVLEEDGFRGAVIEAVEAAY 257 (266)
T ss_pred HHCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_conf 8575998408999999988073999999999999
No 176
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=29.81 E-value=41 Score=14.55 Aligned_cols=31 Identities=3% Similarity=0.132 Sum_probs=23.3
Q ss_pred ECCCCHHH--HHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 36883037--88997519998999999998863
Q gi|254780696|r 284 NVTSPTCI--REIHRNGGENVASLFWDGIEKIK 314 (316)
Q Consensus 284 NvtsP~g~--~~~~~~~~~~i~~~i~d~ie~~~ 314 (316)
+||||+|. +++..+-.-.+.+.+.+.++...
T Consensus 218 ~V~SPGGtT~~gl~~Le~~g~~~~l~~av~aa~ 250 (255)
T PRK06476 218 EFSTKGGLNEQVLNDFSRQGGYAALTDALDRVL 250 (255)
T ss_pred HCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 478996779999999998894999999999999
No 177
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=29.63 E-value=37 Score=14.85 Aligned_cols=41 Identities=10% Similarity=0.209 Sum_probs=17.8
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 372455688885214331116885434468744887115889999984
Q gi|254780696|r 144 RDITQITRFYLEMKDIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFE 191 (316)
Q Consensus 144 ~~~~~~~~f~~~~~~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~ 191 (316)
++++.+...++..+...=+|+. .|+..+..++..+.+.+.+
T Consensus 144 ~~~e~l~~l~~~vk~~~~~Pv~-------vKl~P~~~di~~iA~~~~~ 184 (310)
T COG0167 144 QDPELLEKLLEAVKAATKVPVF-------VKLAPNITDIDEIAKAAEE 184 (310)
T ss_pred CCHHHHHHHHHHHHHCCCCCEE-------EEECCCHHHHHHHHHHHHH
T ss_conf 3999999999999863568659-------9938888999999999997
No 178
>TIGR03334 IOR_beta indolepyruvate ferredoxin oxidoreductase, beta subunit. This model represents the beta subunit of indolepyruvate ferredoxin oxidoreductase, an alpha(2)/beta(2) tetramer, as found in Pyrococcus furiosus and Methanobacterium thermoautotrophicum. Cofactors for the tetramer include TPP, 4Fe4S, and 3Fe-4S. It shows considerable sequence similarity to subunits of several other ketoacid oxidoreductases.
Probab=29.39 E-value=42 Score=14.51 Aligned_cols=77 Identities=16% Similarity=0.219 Sum_probs=50.5
Q ss_pred HHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHHHCCEEEEECCCCCCHHHHHHHH
Q ss_conf 79999999988988999954124899989999999999807774126504644352100636688328862247999999
Q gi|254780696|r 24 TFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQMDVILIRQDPPFNMHYITSTY 103 (316)
Q Consensus 24 T~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~~fD~i~iR~dPp~d~~yi~~~~ 103 (316)
+--|..+|...|+.+...+...++-++|.+..+.+ +.+.. .-.++..+.|+++- ++. +....
T Consensus 17 ~~iLa~AA~~~G~~v~~~~~~G~aqRGG~v~s~vr---i~~~~--------~~~i~~g~~D~li~-----~~~--~e~~r 78 (189)
T TIGR03334 17 SVIIGEAALKAGLPVRAAETHGMAQRGGSVINHIR---IGEVY--------GSMIPEGGADLLLA-----FEP--LEALR 78 (189)
T ss_pred HHHHHHHHHHCCCCEEEEECCCHHHCCCCEEEEEE---ECCCC--------CCCCCCCCCCEEEE-----CCH--HHHHH
T ss_conf 99999999985998897224473542880699999---76664--------78888899888998-----798--99988
Q ss_pred HHHHHCCCC-EEECCH
Q ss_conf 998623585-041174
Q gi|254780696|r 104 LLEKINPET-LIVNNP 118 (316)
Q Consensus 104 ~Le~~~~~~-~viN~p 118 (316)
.+..+.+++ .++|+.
T Consensus 79 ~~~~l~~~g~~i~n~~ 94 (189)
T TIGR03334 79 YLPYLSEGGEVILNTS 94 (189)
T ss_pred HHHCCCCCEEEEECCC
T ss_conf 8742489979999088
No 179
>LOAD_surE consensus
Probab=29.32 E-value=42 Score=14.50 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=25.9
Q ss_pred CEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHE
Q ss_conf 318997099888484764679999999988988999954124
Q gi|254780696|r 5 RNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQL 46 (316)
Q Consensus 5 ~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL 46 (316)
|||++-=| +.++.. --.+|.+++.+.||+||++-|..=
T Consensus 1 M~ILlTND--DGi~a~--Gl~aL~~~l~~~g~~V~vvAP~~~ 38 (192)
T LOAD_surE 1 MRILVTND--DGIDSP--GIRALAEALKEEGAEVTVVAPDRE 38 (192)
T ss_pred CEEEEECC--CCCCCH--HHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 96999837--988888--899999999878996999877998
No 180
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein; InterPro: IPR005971 Synonym: dark protochlorophyllide reductase Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. The light-independent (dark) form of protochlorophyllide reductase plays a key role in the ability of gymnosperms, algae, and photosynthetic bacteria to form chlorophyll in the dark. Genetic and sequence analyses have indicated that dark protochlorophyllide reductase consists of three protein subunits that exhibit significant sequence similarity to the three subunits of nitrogenase, which catalyzes the reductive formation of ammonia from dinitrogen. Dark protochlorophyllide reductase activity was shown to be dependent on the presence of all three subunits, ATP, and the reductant dithionite. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulphur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase . ; GO: 0005524 ATP binding, 0016730 oxidoreductase activity acting on iron-sulfur proteins as donors, 0015995 chlorophyll biosynthetic process, 0019685 photosynthesis dark reaction.
Probab=28.97 E-value=14 Score=17.55 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=27.0
Q ss_pred HCCCCCCCHHHHH--------HHHHHCCCEEEEEEHHHEEEEC
Q ss_conf 8484764679999--------9999889889999541248999
Q gi|254780696|r 16 TVKVKEDSTFAIA--------LEAQVRGYQIFHYTPDQLYMRD 50 (316)
Q Consensus 16 ~i~~~~DTT~~Lm--------~eAq~RGheV~~~~~~dL~~~~ 50 (316)
.=|||+||||-|. .-.|+..|-..=..|.|+-+..
T Consensus 35 GCDPKhDSTFTLtg~L~PTvidvL~~~~yH~E~v~~eD~iy~G 77 (275)
T TIGR01281 35 GCDPKHDSTFTLTGKLIPTVIDVLDAVNYHYEDVEPEDVIYTG 77 (275)
T ss_pred CCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEECCCCCEEEEC
T ss_conf 2578888774544741674644225676303103337877834
No 181
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.55 E-value=44 Score=14.41 Aligned_cols=40 Identities=15% Similarity=0.040 Sum_probs=27.1
Q ss_pred CCCCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEE
Q ss_conf 965331899709988848476467999999998898899995
Q gi|254780696|r 1 MKKIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYT 42 (316)
Q Consensus 1 mkk~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~ 42 (316)
||+.++|+++..+-.. -..+....+.+-..+||++|++-.
T Consensus 1 m~~~k~vgIv~k~~~~--~a~~~~~~l~~~L~~~gi~v~ld~ 40 (296)
T PRK01231 1 MEQFRNIGLIGRLGSS--QVVETLRRLKRFLLDRHLHVILEE 40 (296)
T ss_pred CCCCCEEEEEEECCCH--HHHHHHHHHHHHHHHCCCEEEEEH
T ss_conf 9999899999848987--999999999999987889999932
No 182
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase; InterPro: IPR011294 This entry represents a subfamily of the short chain dehydrogenases. Characterised members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polymers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.; GO: 0003858 3-hydroxybutyrate dehydrogenase activity.
Probab=28.31 E-value=23 Score=16.22 Aligned_cols=17 Identities=24% Similarity=0.192 Sum_probs=6.7
Q ss_pred HHHHHHHHCCCEEEEEE
Q ss_conf 99999998898899995
Q gi|254780696|r 26 AIALEAQVRGYQIFHYT 42 (316)
Q Consensus 26 ~Lm~eAq~RGheV~~~~ 42 (316)
.|+++.-+.||+|-+-+
T Consensus 16 ~iA~~LA~aGa~v~~~d 32 (258)
T TIGR01963 16 AIAKALAAAGANVVVND 32 (258)
T ss_pred HHHHHHHHCCCEEEEEC
T ss_conf 99999987298899846
No 183
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=28.18 E-value=44 Score=14.37 Aligned_cols=30 Identities=13% Similarity=0.202 Sum_probs=21.2
Q ss_pred CCCCCCHHHHHHHHHHCCCEEEEEEHHHEE
Q ss_conf 847646799999999889889999541248
Q gi|254780696|r 18 KVKEDSTFAIALEAQVRGYQIFHYTPDQLY 47 (316)
Q Consensus 18 ~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~ 47 (316)
+||.|---......+++|++||+++|.+..
T Consensus 32 D~Kgel~~~t~~~~~~~G~~v~v~np~~~~ 61 (384)
T cd01126 32 DPKGENFELTSEHRRALGRKVFVFDPTNPR 61 (384)
T ss_pred ECCHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 487899999999999879968998189975
No 184
>pfam03358 FMN_red NADPH-dependent FMN reductase.
Probab=27.61 E-value=45 Score=14.31 Aligned_cols=38 Identities=16% Similarity=0.044 Sum_probs=24.3
Q ss_pred CEEEEEECCHHHCCCCCCC-HHHHH----HHHHHCCCEEEEEEHHHEE
Q ss_conf 3189970998884847646-79999----9999889889999541248
Q gi|254780696|r 5 RNIAIQMNHISTVKVKEDS-TFAIA----LEAQVRGYQIFHYTPDQLY 47 (316)
Q Consensus 5 ~kI~fimDpi~~i~~~~DT-T~~Lm----~eAq~RGheV~~~~~~dL~ 47 (316)
|||+++.-. +.++| |..|+ ++++++|+++.+++..++.
T Consensus 1 mkil~i~GS-----~r~~s~t~~l~~~~~~~l~~~g~e~~~idl~~~~ 43 (147)
T pfam03358 1 MKILVISGS-----PRKGSNTRKLAEWAAELLEEAGAEVELIDLADLP 43 (147)
T ss_pred CEEEEEECC-----CCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 979999767-----9988769999999999987769925996323346
No 185
>pfam02576 DUF150 Uncharacterized BCR, YhbC family COG0779.
Probab=27.61 E-value=40 Score=14.63 Aligned_cols=10 Identities=10% Similarity=0.511 Sum_probs=4.5
Q ss_pred HHHCCCEEEE
Q ss_conf 9988988999
Q gi|254780696|r 31 AQVRGYQIFH 40 (316)
Q Consensus 31 Aq~RGheV~~ 40 (316)
+...|+++|=
T Consensus 6 ~~~~G~el~d 15 (141)
T pfam02576 6 VESLGFELVD 15 (141)
T ss_pred HHHCCCEEEE
T ss_conf 8877999999
No 186
>pfam03485 Arg_tRNA_synt_N Arginyl tRNA synthetase N terminal domain. This domain is found at the amino terminus of Arginyl tRNA synthetase, also called additional domain 1 (Add-1). It is about 140 residues long and it has been suggested that this domain will be involved in tRNA recognition.
Probab=27.60 E-value=45 Score=14.30 Aligned_cols=51 Identities=24% Similarity=0.311 Sum_probs=32.4
Q ss_pred EECCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEECC-EE
Q ss_conf 20456860000001473111007789999999999999984987999951178-78
Q gi|254780696|r 226 RIPSEVDNRSNIHAGGKAELTKLTKIDLDICKRIGESLRERGLFFTGIDVIGD-YI 280 (316)
Q Consensus 226 R~~~~~~~r~Nl~~Gg~~~~~~lt~~~~~i~~~~~~~L~~~gl~~~GiDiig~-~i 280 (316)
+.+.-|||-+|++..- +.....++ +++|++++..|..... |..|.+.|+ |+
T Consensus 29 ~~~~~GD~~~n~a~~l-ak~~~~~P--~~iA~~i~~~l~~~~~-i~~v~vagpGfi 80 (84)
T pfam03485 29 KDPEFGDYATNVAMLL-AKKLKKNP--REIAEEIAEKLPKSDL-IEKVEIAGPGFI 80 (84)
T ss_pred CCCCCCCCHHHHHHHH-HHHCCCCH--HHHHHHHHHHHCCCCC-EEEEEEECCCEE
T ss_conf 9997765256899998-52237998--9999999997256786-769999589779
No 187
>TIGR01036 pyrD_sub2 dihydroorotate oxidase; InterPro: IPR005719 Dihydroorotate dehydrogenase (1.3.3.1 from EC) (DHOdehase) catalyzes the fourth step in the de novo biosynthesis of pyrimidine, the conversion of dihydroorotate into orotate. DHOdehase is a ubiquitous FAD flavoprotein. In bacteria (gene pyrD), DHOdease is located on the inner side of the cytosolic membrane. In some yeasts, such as in Saccharomyces cerevisiae (gene URA1, subfamily 2), it is a cytosolic protein while in other eukaryotes it is found in the mitochondria . This model describes dihydroorotate dehydrogenase subfamily 2 and includes members from bacteria and eukaryotes. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus, however subfamily 2 has a longer N-terminal region.; GO: 0004158 dihydroorotate oxidase activity, 0006207 'de novo' pyrimidine base biosynthetic process, 0016020 membrane.
Probab=27.37 E-value=35 Score=15.06 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=12.7
Q ss_pred CCCCHHHHHHHHHHHHHC
Q ss_conf 199989999999988633
Q gi|254780696|r 298 GGENVASLFWDGIEKIKE 315 (316)
Q Consensus 298 ~~~~i~~~i~d~ie~~~~ 315 (316)
.|.++++.|...|+++.+
T Consensus 337 ~GP~l~k~i~~~i~~lL~ 354 (370)
T TIGR01036 337 KGPPLVKEIVKEIEKLLK 354 (370)
T ss_pred CCCHHHHHHHHHHHHHHH
T ss_conf 771679999999999975
No 188
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=27.23 E-value=46 Score=14.26 Aligned_cols=55 Identities=20% Similarity=0.353 Sum_probs=36.3
Q ss_pred CCCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHE--EEECCEEEEEEEEE
Q ss_conf 653318997099888484764679999999988988999954124--89998999999999
Q gi|254780696|r 2 KKIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQL--YMRDSKIYANTQPL 60 (316)
Q Consensus 2 kk~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL--~~~~g~v~A~~~~i 60 (316)
++.++||.+.= |-+|.+ +|...++-.|+.||+|+=.+|+-- .+-+-+++++...+
T Consensus 14 ~~~K~IAvVG~---S~~P~r-~sy~V~kyL~~~GY~ViPVNP~~~~~eiLG~k~y~sL~dI 70 (140)
T COG1832 14 KSAKTIAVVGA---SDKPDR-PSYRVAKYLQQKGYRVIPVNPKLAGEEILGEKVYPSLADI 70 (140)
T ss_pred HHCCEEEEEEC---CCCCCC-CHHHHHHHHHHCCCEEEEECCCCCHHHHCCCHHHHCHHHC
T ss_conf 85766999945---799986-1889999999789989955855205776283112058758
No 189
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=27.05 E-value=46 Score=14.24 Aligned_cols=33 Identities=12% Similarity=0.072 Sum_probs=22.8
Q ss_pred EEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHH
Q ss_conf 189970998884847646799999999889889999541
Q gi|254780696|r 6 NIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPD 44 (316)
Q Consensus 6 kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~ 44 (316)
+|+|+- -|.-. .-..|.++..+|||||.++...
T Consensus 1 ~~~~~~-----~~~p~-q~r~LA~~La~rGHeV~Vit~~ 33 (396)
T cd03818 1 RILFVH-----QNFPG-QFRHLAPALAAQGHEVVFLTEP 33 (396)
T ss_pred CEEEEC-----CCCCH-HHHHHHHHHHHCCCEEEEEECC
T ss_conf 989988-----99881-6999999999789989999689
No 190
>pfam01726 LexA_DNA_bind LexA DNA binding domain. This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins. The aligned region contains a variant form of the helix-turn-helix DNA binding motif. This domain is found associated with pfam00717 the auto-proteolytic domain of LexA EC:3.4.21.88.
Probab=26.98 E-value=46 Score=14.23 Aligned_cols=48 Identities=25% Similarity=0.341 Sum_probs=34.4
Q ss_pred EECCHHHHHHHHHHHHHHHHCCCEEEEEEEECCEEEEEECCCCHHHHHHHHHCCCCHH---HHHHHHHHH
Q ss_conf 0077899999999999999849879999511787889836883037889975199989---999999988
Q gi|254780696|r 246 TKLTKIDLDICKRIGESLRERGLFFTGIDVIGDYITEINVTSPTCIREIHRNGGENVA---SLFWDGIEK 312 (316)
Q Consensus 246 ~~lt~~~~~i~~~~~~~L~~~gl~~~GiDiig~~i~EvNvtsP~g~~~~~~~~~~~i~---~~i~d~ie~ 312 (316)
.+||++++++-.-+..+..+.|. +|+ ++||.+..|+.=. ...++.||+
T Consensus 2 ~~LT~rQ~~il~~I~~~~~~~G~------------------~Pt-~rEI~~~~g~~S~s~v~~~l~~Le~ 52 (65)
T pfam01726 2 KPLTERQREVLDFIKASIEETGY------------------PPS-RREIAQALGLRSPNAAEEHLKALER 52 (65)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCC------------------CCC-HHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 63379999999999999998288------------------987-9999999389980999999999999
No 191
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=26.80 E-value=47 Score=14.21 Aligned_cols=35 Identities=3% Similarity=-0.014 Sum_probs=25.2
Q ss_pred EEEEEECCHHHCCCCCC--CHHHHHHHHHHCCCEEEEEEH
Q ss_conf 18997099888484764--679999999988988999954
Q gi|254780696|r 6 NIAIQMNHISTVKVKED--STFAIALEAQVRGYQIFHYTP 43 (316)
Q Consensus 6 kI~fimDpi~~i~~~~D--TT~~Lm~eAq~RGheV~~~~~ 43 (316)
||+|++..+ +...= ..+.|+.+..++||+|.++..
T Consensus 1 KIl~v~~~l---~~GG~e~~~~~la~~L~~~g~~v~vi~~ 37 (365)
T cd03807 1 KVLHVITGL---DVGGAERMLVRLLKGLDRDRFEHVVISL 37 (365)
T ss_pred CEEEEECCC---CCCCHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 989996989---9941899999999999977994999995
No 192
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=26.76 E-value=47 Score=14.21 Aligned_cols=78 Identities=13% Similarity=0.145 Sum_probs=45.5
Q ss_pred CCHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCC-EEECCHHHHHH-CCCHHHHHHHHHHCCCCEEECCHHHHHHHHHH
Q ss_conf 52100636688328862247999999998623585-04117488752-56503433454304431000372455688885
Q gi|254780696|r 78 IDLSQMDVILIRQDPPFNMHYITSTYLLEKINPET-LIVNNPFWIRN-SPEKIFVTEFSELMPPTLISRDITQITRFYLE 155 (316)
Q Consensus 78 ~~L~~fD~i~iR~dPp~d~~yi~~~~~Le~~~~~~-~viN~p~~i~~-~~eKl~~~~~~~~~P~T~vt~~~~~~~~f~~~ 155 (316)
.-|-++|-+++|-+-|+.-. ...+..|......+ ++-|+|.-.+. ..++|..+-..+-.|..++|+. .....++.+
T Consensus 10 ~~l~DlDGvl~~G~~~ipga-~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~~~i~TS~-~at~~~l~~ 87 (269)
T COG0647 10 GFLFDLDGVLYRGNEAIPGA-AEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTPDDIVTSG-DATADYLAK 87 (269)
T ss_pred EEEECCCCCEEECCCCCCHH-HHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCHHHEECHH-HHHHHHHHH
T ss_conf 99990767168389238159-9999999986993999958998998999999986269988877766389-999999985
Q ss_pred HH
Q ss_conf 21
Q gi|254780696|r 156 MK 157 (316)
Q Consensus 156 ~~ 157 (316)
+.
T Consensus 88 ~~ 89 (269)
T COG0647 88 QK 89 (269)
T ss_pred HC
T ss_conf 37
No 193
>pfam04127 DFP DNA / pantothenate metabolism flavoprotein. The DNA/pantothenate metabolism flavoprotein (EC:4.1.1.36) affects synthesis of DNA, and pantothenate metabolism.
Probab=26.11 E-value=48 Score=14.13 Aligned_cols=20 Identities=30% Similarity=0.137 Sum_probs=16.9
Q ss_pred CHHHHHHHHHHCCCEEEEEE
Q ss_conf 67999999998898899995
Q gi|254780696|r 23 STFAIALEAQVRGYQIFHYT 42 (316)
Q Consensus 23 TT~~Lm~eAq~RGheV~~~~ 42 (316)
+-++|+++|.+||++|.++.
T Consensus 30 mG~alA~~~~~~Ga~V~li~ 49 (197)
T pfam04127 30 MGAAIAEEFLKRGADVTLIA 49 (197)
T ss_pred HHHHHHHHHHHCCCCEEEEE
T ss_conf 99999999997899389972
No 194
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=26.09 E-value=48 Score=14.13 Aligned_cols=63 Identities=19% Similarity=0.168 Sum_probs=31.2
Q ss_pred EEECCHHHHHHCCCHHHH-H-HHHHH-CCCCEEECCHH-HHHHHHHH-HHHHHHHCCCCCCCCCEEEE
Q ss_conf 041174887525650343-3-45430-44310003724-55688885-21433111688543446874
Q gi|254780696|r 113 LIVNNPFWIRNSPEKIFV-T-EFSEL-MPPTLISRDIT-QITRFYLE-MKDIIIKPLYGNGGTGVFRI 175 (316)
Q Consensus 113 ~viN~p~~i~~~~eKl~~-~-~~~~~-~P~T~vt~~~~-~~~~f~~~-~~~vViKPl~g~~G~gV~~i 175 (316)
+-||+|.+--...+.++. + .+.+. .|--....+.. ..--.+.- -..++.-|....|..||+..
T Consensus 44 l~InSpGG~~~~s~~i~~~i~~~~~~~KPVva~~~~~aaSggY~iAsaad~I~a~p~s~vGSIGV~~~ 111 (211)
T cd07019 44 LRVNSPGGSVTASEVIRAELAAARAAGKPVVVSAGGAAASGGYWISTPANYIVANPSTLTGSIGIFGV 111 (211)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCEEEECCCCCEEEEEEEEE
T ss_conf 99769697689999999999998646997999977844348899985589899848873565568998
No 195
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=26.04 E-value=40 Score=14.66 Aligned_cols=38 Identities=26% Similarity=0.272 Sum_probs=26.0
Q ss_pred CEE-EEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEE
Q ss_conf 318-99709988848476467999999998898899995
Q gi|254780696|r 5 RNI-AIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYT 42 (316)
Q Consensus 5 ~kI-~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~ 42 (316)
||| ++||++-..+...-+....++++|.++|-++-++.
T Consensus 1 mkvA~vQ~~~~~d~~~Nl~~~~~~i~~A~~~ga~livfP 39 (279)
T TIGR03381 1 VTVAALQMACSDDVETNIARAERLVREAAARGAQIILLP 39 (279)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEECC
T ss_conf 989999454899999999999999999998849899938
No 196
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=26.01 E-value=48 Score=14.12 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=18.6
Q ss_pred CCCCCCHHHHHHHHHHCCCEEEEE
Q ss_conf 847646799999999889889999
Q gi|254780696|r 18 KVKEDSTFAIALEAQVRGYQIFHY 41 (316)
Q Consensus 18 ~~~~DTT~~Lm~eAq~RGheV~~~ 41 (316)
.-.|||+++|-. |.+.||+|.+.
T Consensus 8 SGGKDS~~Al~~-a~~~G~eV~~L 30 (223)
T COG2102 8 SGGKDSFYALYL-ALEEGHEVVYL 30 (223)
T ss_pred ECCCHHHHHHHH-HHHCCCEEEEE
T ss_conf 167188999999-99759836899
No 197
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=25.59 E-value=49 Score=14.07 Aligned_cols=75 Identities=16% Similarity=0.095 Sum_probs=36.3
Q ss_pred HHHHHHHHCC--CC----EEECCHHHHHHCCCHHHHH--HHHH-HCCCCEEECCHHH-HHHHHHH-HHHHHHHCCCCCCC
Q ss_conf 9999986235--85----0411748875256503433--4543-0443100037245-5688885-21433111688543
Q gi|254780696|r 101 STYLLEKINP--ET----LIVNNPFWIRNSPEKIFVT--EFSE-LMPPTLISRDITQ-ITRFYLE-MKDIIIKPLYGNGG 169 (316)
Q Consensus 101 ~~~~Le~~~~--~~----~viN~p~~i~~~~eKl~~~--~~~~-~~P~T~vt~~~~~-~~~f~~~-~~~vViKPl~g~~G 169 (316)
....|+.+.+ .+ +-||+|-+--...+-++-. +|.+ --|-.....+... ---++.- -..++.-|....|.
T Consensus 27 i~~~l~~a~~d~~vkaIvL~InSPGGs~~~s~~i~~~I~~~r~~~KPV~a~~~~~aASg~Y~iA~aad~I~a~p~s~vGS 106 (177)
T cd07014 27 TAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVASGGGNAASGGYWISTPANYIVANPSTLVGS 106 (177)
T ss_pred HHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCEEEECCCCEEEE
T ss_conf 99999999519996289999618981889999999999998865998999977856205778761278899869972776
Q ss_pred CCEEEE
Q ss_conf 446874
Q gi|254780696|r 170 TGVFRI 175 (316)
Q Consensus 170 ~gV~~i 175 (316)
.||+-.
T Consensus 107 IGV~~~ 112 (177)
T cd07014 107 IGIFGV 112 (177)
T ss_pred EEEEEE
T ss_conf 269866
No 198
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=24.71 E-value=24 Score=16.16 Aligned_cols=54 Identities=26% Similarity=0.476 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHCCCEEEEEEEECCEEEE---EE--CCCCHHHHHHHH-------HCCCCHHHHHHHHHHH
Q ss_conf 99999999999849879999511787889---83--688303788997-------5199989999999988
Q gi|254780696|r 254 DICKRIGESLRERGLFFTGIDVIGDYITE---IN--VTSPTCIREIHR-------NGGENVASLFWDGIEK 312 (316)
Q Consensus 254 ~i~~~~~~~L~~~gl~~~GiDiig~~i~E---vN--vtsP~g~~~~~~-------~~~~~i~~~i~d~ie~ 312 (316)
|+|.++|+.| |+.|--.|| ..| +| |- +-||.|-.|+++ +..-+-|=.+.|-|||
T Consensus 542 Elak~LA~~L---Gv~l~RFDM-SEY-mEKHTVsRLIGsPPGYVGfEqGGLLT~AvrK~P~cVLLLDEIEK 607 (774)
T TIGR02639 542 ELAKQLAEEL---GVHLLRFDM-SEY-MEKHTVSRLIGSPPGYVGFEQGGLLTDAVRKHPHCVLLLDEIEK 607 (774)
T ss_pred HHHHHHHHHH---CCHHCCCCC-HHH-HHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCEEEHHHHHHH
T ss_conf 8899999970---820010465-044-68999987416888851316777212233128853542346666
No 199
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase; InterPro: IPR011869 This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of this entry belong to the Proteobacteria. ; GO: 0009021 tRNA (uracil-5-)-methyltransferase activity, 0008033 tRNA processing.
Probab=24.66 E-value=51 Score=13.96 Aligned_cols=185 Identities=16% Similarity=0.219 Sum_probs=78.0
Q ss_pred HHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEE-CCCCCEE---EECCC-CCCCHHHCCEEEEECCCCCCHHHHH
Q ss_conf 99999998898899995412489998999999999980-7774126---50464-4352100636688328862247999
Q gi|254780696|r 26 AIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLD-EKKEQYY---SLGEE-KIIDLSQMDVILIRQDPPFNMHYIT 100 (316)
Q Consensus 26 ~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~-~~~~~~f---~~~~~-~~~~L~~fD~i~iR~dPp~d~~yi~ 100 (316)
.++..-+....+||--..++-.++ |. .++- ++.+.|| +-+.. +.+-++.|++- ..-|+
T Consensus 15 ~~~~~F~~p~~~vF~Sp~~HYRmR-----AE---FR~WhE~d~~yY~MFd~~~k~~~~~~d~f~~A---------S~~IN 77 (361)
T TIGR02143 15 KLFAPFDAPEPEVFESPDKHYRMR-----AE---FRLWHEGDDLYYAMFDQATKASKIRVDQFPIA---------SELIN 77 (361)
T ss_pred HHHHHCCCCCCEEECCCCCCCCEE-----EE---EEEEEECCCEEEEECCCCCCCCCEEECCCHHH---------HHHHH
T ss_conf 984210688613431874436121-----35---67887188068861681116773353055255---------79999
Q ss_pred HHHHHHHHCCCCEEECCHHHHHHCCCHHHHHHHHH----HCCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEC
Q ss_conf 99999862358504117488752565034334543----04431000372455688885214331116885434468744
Q gi|254780696|r 101 STYLLEKINPETLIVNNPFWIRNSPEKIFVTEFSE----LMPPTLISRDITQITRFYLEMKDIIIKPLYGNGGTGVFRIT 176 (316)
Q Consensus 101 ~~~~Le~~~~~~~viN~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~~~~~f~~~~~~vViKPl~g~~G~gV~~i~ 176 (316)
.+. ..+-. .+-...+|+ +|||...|.. -+--|++.+ ..+.+-+++. --=+|-.-..++-+|-.|.
T Consensus 78 ~lM--~~L~~---~~~~~~~L~---~KLFqvdfLsTLsg~~~vsLlYH--k~Ldd~W~~~-A~~L~~~L~~~~l~v~lIG 146 (361)
T TIGR02143 78 RLM--PALIA---ALKQNEALR---HKLFQVDFLSTLSGEILVSLLYH--KQLDDEWRQA-AEALKDKLRAQGLDVNLIG 146 (361)
T ss_pred HHH--HHHHH---HHHHCHHHH---HHCEEHHHHHHHHHHHHHHHHCC--CCHHHHHHHH-HHHHHHHHHHCCCCEEEEE
T ss_conf 999--99999---984066754---00122025664578888577506--7721789999-9999999863478568997
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEECCEEEEEEEEECCCCCCCCCCCCCCCEEEEECCHHHHHHH
Q ss_conf 88711588999998400133400210534456826999989988632122045686000000147311100778999999
Q gi|254780696|r 177 LGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGKPVGAVNRIPSEVDNRSNIHAGGKAELTKLTKIDLDIC 256 (316)
Q Consensus 177 ~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~g~~v~a~~R~~~~~~~r~Nl~~Gg~~~~~~lt~~~~~i~ 256 (316)
.+. ++.-++=|+||. -.+-|+|+.+ .+|. .+|+|. .=-..++.+..+=|
T Consensus 147 Ra~-------------k~Ki~l~~DYv~-------E~L~V~gr~~--~YrQ-~E~sFt--------QPNa~vn~kMLeWA 195 (361)
T TIGR02143 147 RAR-------------KKKIVLDRDYVD-------ETLPVNGREF--IYRQ-VENSFT--------QPNAAVNQKMLEWA 195 (361)
T ss_pred ECC-------------CCEEEEECCCEE-------EEECCCCEEE--EEEE-CCCCCC--------CCCHHHHHHHHHHH
T ss_conf 336-------------865551035303-------6620388078--9986-378724--------75189999999999
Q ss_pred HHHHHHHHHCCCEEEEEEEE
Q ss_conf 99999999849879999511
Q gi|254780696|r 257 KRIGESLRERGLFFTGIDVI 276 (316)
Q Consensus 257 ~~~~~~L~~~gl~~~GiDii 276 (316)
..+. . +- .|+|++
T Consensus 196 ~~~~---~--~~--~g~DLL 208 (361)
T TIGR02143 196 LEVT---Q--NS--KGMDLL 208 (361)
T ss_pred HHHH---C--CC--CCCCCC
T ss_conf 9983---5--88--887201
No 200
>pfam00201 UDPGT UDP-glucoronosyl and UDP-glucosyl transferase.
Probab=24.02 E-value=52 Score=13.88 Aligned_cols=24 Identities=25% Similarity=0.265 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHCCCEEEEEEHHHE
Q ss_conf 679999999988988999954124
Q gi|254780696|r 23 STFAIALEAQVRGYQIFHYTPDQL 46 (316)
Q Consensus 23 TT~~Lm~eAq~RGheV~~~~~~dL 46 (316)
...+|++|..+|||+|-++.|..-
T Consensus 15 ~~~~l~~~La~RGH~VTvl~p~~~ 38 (501)
T pfam00201 15 NMKGILLELVQRGHEVTVLRPSAS 38 (501)
T ss_pred HHHHHHHHHHHCCCEEEEEEEECC
T ss_conf 999999999988992999971351
No 201
>PRK06853 indolepyruvate oxidoreductase subunit B; Reviewed
Probab=23.93 E-value=53 Score=13.87 Aligned_cols=78 Identities=17% Similarity=0.301 Sum_probs=49.4
Q ss_pred HHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHHHCCEEEEECCCCCCHHHHHHHH
Q ss_conf 79999999988988999954124899989999999999807774126504644352100636688328862247999999
Q gi|254780696|r 24 TFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQMDVILIRQDPPFNMHYITSTY 103 (316)
Q Consensus 24 T~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~~fD~i~iR~dPp~d~~yi~~~~ 103 (316)
+-.|..+|...|+.+..++.-.++-++|.+.++.+ +.+. . + +-..+-...|+++. +|.. ....
T Consensus 20 ~~iLa~Aa~~~G~~v~~~~~~G~~qRGG~v~s~ir---i~~~--~-~----~p~i~~~~aD~lv~-----~d~~--~~~~ 82 (197)
T PRK06853 20 SKILGEAALAAGYDVKVSEVHGMSQRGGSVVSHVR---FGDE--V-Y----SPLIPEGGADILLA-----FEPL--EALR 82 (197)
T ss_pred HHHHHHHHHHCCCCEEEEECCCHHHCCCCEEEEEE---EECC--C-C----CCCCCCCCCCEEEE-----CCHH--HHHH
T ss_conf 99999999986998898124487773880699999---8177--5-7----87658898888996-----3888--8887
Q ss_pred HHHHHCCCC-EEECCH
Q ss_conf 998623585-041174
Q gi|254780696|r 104 LLEKINPET-LIVNNP 118 (316)
Q Consensus 104 ~Le~~~~~~-~viN~p 118 (316)
.++.+.+++ .|+|+.
T Consensus 83 ~~~~l~~~~~~ivn~~ 98 (197)
T PRK06853 83 YLPYLKPGGKVVVNTQ 98 (197)
T ss_pred HHHCCCCCEEEEEECC
T ss_conf 8631588859999788
No 202
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=23.88 E-value=53 Score=13.86 Aligned_cols=30 Identities=10% Similarity=0.175 Sum_probs=23.7
Q ss_pred CCCCHHH--HHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 6883037--88997519998999999998863
Q gi|254780696|r 285 VTSPTCI--REIHRNGGENVASLFWDGIEKIK 314 (316)
Q Consensus 285 vtsP~g~--~~~~~~~~~~i~~~i~d~ie~~~ 314 (316)
|+||+|. .++..+..-++.+.+.+.+++-.
T Consensus 229 V~SpgGtT~aGl~~Le~~g~~~~i~~Ai~aA~ 260 (272)
T PRK12491 229 VCSPGGTTIEAVATLEEKGLRTAIISAMKRCT 260 (272)
T ss_pred CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 78997879999999998882999999999999
No 203
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase; InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase . ; GO: 0008924 malate dehydrogenase (acceptor) activity, 0006099 tricarboxylic acid cycle.
Probab=23.84 E-value=53 Score=13.86 Aligned_cols=176 Identities=16% Similarity=0.235 Sum_probs=79.3
Q ss_pred HHHHHHHHHHC-CCEEEEEE-HHHEEEECCEEEEEEEEEEEECCCCCEE-EECCCCC-CCHH--HCCEEEEECCCCCCHH
Q ss_conf 79999999988-98899995-4124899989999999999807774126-5046443-5210--0636688328862247
Q gi|254780696|r 24 TFAIALEAQVR-GYQIFHYT-PDQLYMRDSKIYANTQPLSLDEKKEQYY-SLGEEKI-IDLS--QMDVILIRQDPPFNMH 97 (316)
Q Consensus 24 T~~Lm~eAq~R-GheV~~~~-~~dL~~~~g~v~A~~~~i~i~~~~~~~f-~~~~~~~-~~L~--~fD~i~iR~dPp~d~~ 97 (316)
|-.|+..++.. |-++.|-. ..+|.-+ ....|. +..+.+. =.-. +-.+||+= .
T Consensus 181 t~Ql~~~~~~~PG~~~~yg~~V~~l~r~---------------sD~~W~vt~~d~r~PG~~~~l~a~FvFlG-------A 238 (487)
T TIGR01320 181 TKQLLKYLEQEPGTKIRYGHEVKDLKRE---------------SDGAWVVTVKDTRTPGGKRTLKARFVFLG-------A 238 (487)
T ss_pred HHHHHHHHHCCCCCEEECCCCEEHHHHC---------------CCCCCEEEECCCCCCCCCEEEEEEEEEEE-------C
T ss_conf 9999999702898167638500011010---------------58853788412208887626766778971-------5
Q ss_pred HHHHHHHHHHH---CCCC--------EE--ECCHHHHHHCCCHHHHHHHHHH-CCCCEEECCHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999862---3585--------04--1174887525650343345430-443100037245568888521433111
Q gi|254780696|r 98 YITSTYLLEKI---NPET--------LI--VNNPFWIRNSPEKIFVTEFSEL-MPPTLISRDITQITRFYLEMKDIIIKP 163 (316)
Q Consensus 98 yi~~~~~Le~~---~~~~--------~v--iN~p~~i~~~~eKl~~~~~~~~-~P~T~vt~~~~~~~~f~~~~~~vViKP 163 (316)
+=+++-+|+.. +-++ +. -.||.-+..++-|.|. +++. -||--|-+ . + ..+++=.+..+.=|
T Consensus 239 GG~AL~lLq~SGIpevKGFaGFPvSG~fLR~~Npe~~~qH~AKVYG--~A~vGAPPmSvpH-L-D-tR~v~Gk~~LlFGP 313 (487)
T TIGR01320 239 GGGALPLLQKSGIPEVKGFAGFPVSGLFLRCSNPELVEQHRAKVYG--QASVGAPPMSVPH-L-D-TRVVDGKKSLLFGP 313 (487)
T ss_pred CCCHHHHHHHCCCCCCCCCCCCCCCCEECCCCCHHHHHHHCCCCCC--CCCCCCCCCCCCC-C-C-CEEECCCCCCCCCC
T ss_conf 7416889886679876653365755500017887999850562157--7887648887540-0-0-10255711210157
Q ss_pred CCCCCCCCEEEECCC----------CCCHHHHHHHH------HH---------HCCCCCCEEECCCCCCCCCEEEEEECC
Q ss_conf 688543446874488----------71158899999------84---------001334002105344568269999899
Q gi|254780696|r 164 LYGNGGTGVFRITLG----------DRNFSSLIEML------FE---------KYPEPLMIQSYLPQIRDGDKRILLLNG 218 (316)
Q Consensus 164 l~g~~G~gV~~i~~~----------~~~~~~~~e~~------~~---------~~~~~ii~Qefi~~~~~gD~Rv~vi~g 218 (316)
-.|+.-+ ++.+. -.|+.+.+..- ++ ..++-==+-||.|++..+|+|.+|- |
T Consensus 314 YAGf~~k---FLk~Gs~~DLP~SirpDNl~s~L~va~~~~~Lt~YLi~~l~~~~~~R~~ALrey~PeA~~~DWel~vA-G 389 (487)
T TIGR01320 314 YAGFSPK---FLKHGSLLDLPLSIRPDNLLSMLGVALAEMDLTKYLIGELRKSKEERLEALREYYPEARDEDWELIVA-G 389 (487)
T ss_pred CCCCCCC---HHCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCEEEEC-C
T ss_conf 7888831---20176312065432676512378887752047888998760693578999974064677988358753-6
Q ss_pred EEEEEEEEECCC
Q ss_conf 886321220456
Q gi|254780696|r 219 KPVGAVNRIPSE 230 (316)
Q Consensus 219 ~~v~a~~R~~~~ 230 (316)
+=|-.++|=|.+
T Consensus 390 QRVQvIk~d~~~ 401 (487)
T TIGR01320 390 QRVQVIKKDSEK 401 (487)
T ss_pred EEEEEEECCCCC
T ss_conf 167887417788
No 204
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=23.65 E-value=53 Score=13.83 Aligned_cols=67 Identities=12% Similarity=0.076 Sum_probs=38.5
Q ss_pred CEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHHHCC
Q ss_conf 31899709988848476467999999998898899995412489998999999999980777412650464435210063
Q gi|254780696|r 5 RNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQMD 84 (316)
Q Consensus 5 ~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~~fD 84 (316)
|||+++=|+.+-- -.|....++.||+|..+.-. ..-++ ...-..+|
T Consensus 1 MkILiVEDd~~l~-------~~l~~~L~~~G~~v~~a~~g----------------------~~a~~-----~~~~~~~D 46 (226)
T PRK09836 1 MKLLIVEDEKKTG-------EYLTKGLTEAGFVVDLADNG----------------------LNGYH-----LAMTGDYD 46 (226)
T ss_pred CEEEEEECCHHHH-------HHHHHHHHHCCCEEEEECCH----------------------HHHHH-----HHHHCCCC
T ss_conf 9899993999999-------99999998789999998999----------------------99999-----98518999
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 6688328862247999999998
Q gi|254780696|r 85 VILIRQDPPFNMHYITSTYLLE 106 (316)
Q Consensus 85 ~i~iR~dPp~d~~yi~~~~~Le 106 (316)
++++=..-| +++++..+..+.
T Consensus 47 lvilDi~lP-~~~G~~l~~~iR 67 (226)
T PRK09836 47 LIILDIMLP-DVNGWDIVRMLR 67 (226)
T ss_pred EEEECCCCC-CCCCCCHHHHHH
T ss_conf 999889999-998720435677
No 205
>PRK06487 glycerate dehydrogenase; Provisional
Probab=23.51 E-value=50 Score=14.05 Aligned_cols=73 Identities=15% Similarity=0.183 Sum_probs=41.8
Q ss_pred CCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEEC-------CEEE--EE-E-CCCCHHHHHHHHH
Q ss_conf 5686000000147311100778999999999999998498799995117-------8788--98-3-6883037889975
Q gi|254780696|r 229 SEVDNRSNIHAGGKAELTKLTKIDLDICKRIGESLRERGLFFTGIDVIG-------DYIT--EI-N-VTSPTCIREIHRN 297 (316)
Q Consensus 229 ~~~~~r~Nl~~Gg~~~~~~lt~~~~~i~~~~~~~L~~~gl~~~GiDiig-------~~i~--Ev-N-vtsP~g~~~~~~~ 297 (316)
+.+.+.-|.++|+.... ..+...|++..+..||+|+.. ..+. +. | +.+| .+-+....
T Consensus 224 k~~a~lIN~aRG~lVde-----------~aL~~AL~~g~i~gAalDV~~~EP~~~~~pl~~~~~pNvilTP-Hia~~t~e 291 (317)
T PRK06487 224 KPGALLINTARGGLVDE-----------QALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTP-HSAWGSRE 291 (317)
T ss_pred CCCCEEEEECCCCCCCH-----------HHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHCCCCCEEECC-CCCCCHHH
T ss_conf 89978997068654699-----------9999999849941899958999899999934537999899868-53506099
Q ss_pred CCCCHHHHHHHHHHHH
Q ss_conf 1999899999999886
Q gi|254780696|r 298 GGENVASLFWDGIEKI 313 (316)
Q Consensus 298 ~~~~i~~~i~d~ie~~ 313 (316)
+-.+++..+++.+++.
T Consensus 292 a~~~~~~~~~~ni~~f 307 (317)
T PRK06487 292 ARQRIVGQLAENARAF 307 (317)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999999999
No 206
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=23.43 E-value=54 Score=13.81 Aligned_cols=39 Identities=15% Similarity=0.176 Sum_probs=25.5
Q ss_pred CEEEEEECCHHHCCCCCC-CHHHHHHHHHHCCCEEEEEEH
Q ss_conf 318997099888484764-679999999988988999954
Q gi|254780696|r 5 RNIAIQMNHISTVKVKED-STFAIALEAQVRGYQIFHYTP 43 (316)
Q Consensus 5 ~kI~fimDpi~~i~~~~D-TT~~Lm~eAq~RGheV~~~~~ 43 (316)
|||+|-.|-=.++=..+= =.++|+++..++||+|+++..
T Consensus 1 mkI~fr~d~~~~iG~GH~~RclaLA~~l~~~g~~v~f~~~ 40 (280)
T TIGR03590 1 MRILFRADASSEIGLGHVMRCLTLARELRKRGAEVAFACK 40 (280)
T ss_pred CEEEEEEECCCCEEHHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 9799999678991320899999999999988994999992
No 207
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases; InterPro: IPR011830 Methanogenic archaea contain three closely related homologs of the 2-isopropylmalate synthases (LeuA) represented by IPR005671 from INTERPRO. Two of these in Methanococcus janaschii (MJ1392 - CimA ; MJ0503 - AksA ) have been characterised as catalyzing alternative reactions leaving the third (MJ1195) as the presumptive LeuA enzyme. CimA is citramalate (2-methylmalate) synthase, which condenses acetyl-CoA with pyruvate. This enzyme is believed to be involved in the biosynthesis of isoleucine in methanogens and possibly other species lacking threonine dehydratase. AksA is a homocitrate synthase which also produces (homo)2-citrate and (homo)3-citrate in the biosynthesis of Coenzyme B which is restricted solely to methanogenic archaea. Methanogens, then should and apparently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea, which lack a threonine dehydratase (mainly Euryarchaeota), should contain both CimA and LeuA genes. This is true for archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in IPR005671 from INTERPRO and one in IPR005675 from INTERPRO which may fulfil these roles. Proteins from other species, which have only one hit to this entry and lack threonine dehydratase, are very likely to be LeuA enzymes.; GO: 0046912 transferase activity transferring acyl groups acyl groups converted into alkyl on transfer, 0019752 carboxylic acid metabolic process.
Probab=23.05 E-value=55 Score=13.76 Aligned_cols=58 Identities=12% Similarity=0.142 Sum_probs=33.0
Q ss_pred HHHHCCCCE-E-ECCHHHHHHCCCHHHHHHH-HH---------HCCCCEEECCHHHHHHHHHHHHHHHH--HCC
Q ss_conf 986235850-4-1174887525650343345-43---------04431000372455688885214331--116
Q gi|254780696|r 105 LEKINPETL-I-VNNPFWIRNSPEKIFVTEF-SE---------LMPPTLISRDITQITRFYLEMKDIII--KPL 164 (316)
Q Consensus 105 Le~~~~~~~-v-iN~p~~i~~~~eKl~~~~~-~~---------~~P~T~vt~~~~~~~~f~~~~~~vVi--KPl 164 (316)
-|+++..++ | +--=+|-|. |+=|.+++ .+ .+|+|.=.-.|......+++.+..|= +|+
T Consensus 120 vEYAKEHGLiVEfSAEDATRt--d~dfLIk~~k~A~eAGADRi~~~DTVGV~~P~km~~l~k~~k~~~kKd~~~ 191 (371)
T TIGR02090 120 VEYAKEHGLIVEFSAEDATRT--DIDFLIKVFKKAEEAGADRINVADTVGVLTPQKMEELIKKIKENVKKDLPV 191 (371)
T ss_pred HHHHHHCCCEEEECCCCCCCC--CHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCE
T ss_conf 987752573553177887658--678999998713321677755078556368267999999999863588705
No 208
>PRK00726 murG N-acetylglucosaminyl transferase; Provisional
Probab=23.00 E-value=55 Score=13.75 Aligned_cols=23 Identities=26% Similarity=0.209 Sum_probs=18.5
Q ss_pred HHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf 99751999899999999886339
Q gi|254780696|r 294 IHRNGGENVASLFWDGIEKIKET 316 (316)
Q Consensus 294 ~~~~~~~~i~~~i~d~ie~~~~~ 316 (316)
+......|-++.|+|.+|++.++
T Consensus 337 ~~~~~~~~a~~~i~~~i~~~~~~ 359 (359)
T PRK00726 337 ARALGIPDAAERLADLIEKLARS 359 (359)
T ss_pred HHCCCCCCHHHHHHHHHHHHHCC
T ss_conf 97248978999999999998539
No 209
>PRK09620 hypothetical protein; Provisional
Probab=22.77 E-value=55 Score=13.72 Aligned_cols=20 Identities=20% Similarity=0.104 Sum_probs=17.2
Q ss_pred CHHHHHHHHHHCCCEEEEEE
Q ss_conf 67999999998898899995
Q gi|254780696|r 23 STFAIALEAQVRGYQIFHYT 42 (316)
Q Consensus 23 TT~~Lm~eAq~RGheV~~~~ 42 (316)
+-++|+++|.+||++|.++.
T Consensus 31 mG~aiA~~a~~~GA~Vtli~ 50 (229)
T PRK09620 31 IGRIIAEELISKGAHVIYLH 50 (229)
T ss_pred HHHHHHHHHHHCCCEEEEEE
T ss_conf 99999999997799799994
No 210
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; InterPro: IPR006009 The murG gene of Escherichia coli encodes the N-acetylglucosaminyltransferase, UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase, responsible for the final step in the formation of the lipid-linked disaccharide-pentapeptide subunit of peptidoglycan. The enzyme is peripherally associated with the inner face of the cytoplasmic membrane. Therefore, the peptidoglycan subunit is completely assembled before it traverses the cytoplasmic membrane .; GO: 0050511 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity, 0019277 UDP-N-acetylgalactosamine biosynthetic process, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=22.76 E-value=55 Score=13.72 Aligned_cols=71 Identities=20% Similarity=0.219 Sum_probs=41.7
Q ss_pred CCCCCEEEEEECCHHHCCCCCCCHHHHHHHHHHCC--CEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECC-CCC
Q ss_conf 96533189970998884847646799999999889--889999541248999899999999998077741265046-443
Q gi|254780696|r 1 MKKIRNIAIQMNHISTVKVKEDSTFAIALEAQVRG--YQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGE-EKI 77 (316)
Q Consensus 1 mkk~~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RG--heV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~-~~~ 77 (316)
|+++|+|++-.==.-.+=| -++++++.++|| ++|.++...+= + + .++.+ ...
T Consensus 2 ~~~~~~~~~~gGGTGG~fP----AlA~a~~l~~~~~~~~v~~lG~~~g-------------~------e--~~lv~~~~~ 56 (368)
T TIGR01133 2 MNKMKKVALAGGGTGGIFP----ALAVAEELIKRGPEVEVVWLGTKRG-------------L------E--ERLVPSKEG 56 (368)
T ss_pred CCCCEEEEEECCCCCHHHH----HHHHHHHHHHHCCCEEEEEECCCCC-------------C------C--CCCCCCCCC
T ss_conf 9882289997278302689----9999999997489369998506775-------------0------0--003432157
Q ss_pred CCHHHCCEEEEECCCCCCH
Q ss_conf 5210063668832886224
Q gi|254780696|r 78 IDLSQMDVILIRQDPPFNM 96 (316)
Q Consensus 78 ~~L~~fD~i~iR~dPp~d~ 96 (316)
+.+-++++--+|.-+++..
T Consensus 57 ~~~~~i~~~gl~~~~~~~~ 75 (368)
T TIGR01133 57 IEFLTIPVGGLRRKGSKKL 75 (368)
T ss_pred CEEEEEEECCCCCCCCHHH
T ss_conf 4177774010036551014
No 211
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=22.74 E-value=56 Score=13.72 Aligned_cols=31 Identities=16% Similarity=0.171 Sum_probs=23.2
Q ss_pred ECCCCHHH--HHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 36883037--88997519998999999998863
Q gi|254780696|r 284 NVTSPTCI--REIHRNGGENVASLFWDGIEKIK 314 (316)
Q Consensus 284 NvtsP~g~--~~~~~~~~~~i~~~i~d~ie~~~ 314 (316)
+|+||+|. .+++.+-.-++.+.+.+.++.-.
T Consensus 226 ~V~SpgGtT~~gl~~Le~~g~~~~i~~Ai~aa~ 258 (267)
T PRK11880 226 NVTSPGGTTIAALRVLEEGGFRAAVIEAVQAAA 258 (267)
T ss_pred HCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 367996539999999998884999999999999
No 212
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=22.48 E-value=56 Score=13.69 Aligned_cols=20 Identities=5% Similarity=-0.115 Sum_probs=12.7
Q ss_pred CCCHHHHHHHHHHCCCEEEE
Q ss_conf 64679999999988988999
Q gi|254780696|r 21 EDSTFAIALEAQVRGYQIFH 40 (316)
Q Consensus 21 ~DTT~~Lm~eAq~RGheV~~ 40 (316)
-+++...++.+.+-|+---+
T Consensus 22 ~~~~~e~~~~~~~~G~Gavv 41 (325)
T cd04739 22 LSRNLDNIRRLEDAGAGAIV 41 (325)
T ss_pred CCCCHHHHHHHHHCCCEEEE
T ss_conf 68999999999985967999
No 213
>TIGR00313 cobQ cobyric acid synthase CobQ; InterPro: IPR004459 Cobyric acid synthase (CobQ) catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolysed for each amidation .; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process.
Probab=22.24 E-value=23 Score=16.23 Aligned_cols=72 Identities=14% Similarity=0.105 Sum_probs=38.1
Q ss_pred HHHHCC--CCEEECCHHHHHHCC---CHHHHHHHHHH-CCCCEEECCHHHHHHHHHHHHHHHHHCC-CCCCCCCEEEECC
Q ss_conf 986235--850411748875256---50343345430-4431000372455688885214331116-8854344687448
Q gi|254780696|r 105 LEKINP--ETLIVNNPFWIRNSP---EKIFVTEFSEL-MPPTLISRDITQITRFYLEMKDIIIKPL-YGNGGTGVFRITL 177 (316)
Q Consensus 105 Le~~~~--~~~viN~p~~i~~~~---eKl~~~~~~~~-~P~T~vt~~~~~~~~f~~~~~~vViKPl-~g~~G~gV~~i~~ 177 (316)
||.+.+ ..+|+--.-|.-.-| .=|.-++.+++ -|++++..|.+-==-|..-+|++-|=|- .-.-=+||. |++
T Consensus 116 le~L~~~Yd~vv~EGAGS~AEINL~~rDLaN~~iA~~~~A~~iLvADIDRGGVFAsi~GTl~LL~~~~r~liKG~v-INk 194 (502)
T TIGR00313 116 LEILAEEYDLVVIEGAGSPAEINLKERDLANMRIAELADADVILVADIDRGGVFASIYGTLKLLPEEERKLIKGIV-INK 194 (502)
T ss_pred HHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCEECEEE-ECC
T ss_conf 9875202888998268871000533157224789864397679997507774324337466618834575003068-835
No 214
>pfam02384 N6_Mtase N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.
Probab=21.82 E-value=58 Score=13.60 Aligned_cols=16 Identities=38% Similarity=0.816 Sum_probs=10.8
Q ss_pred HHHCCEEEEECCCCCCHH
Q ss_conf 100636688328862247
Q gi|254780696|r 80 LSQMDVILIRQDPPFNMH 97 (316)
Q Consensus 80 L~~fD~i~iR~dPp~d~~ 97 (316)
...||+|+. +|||...
T Consensus 123 ~~kfD~Ils--NPPFg~k 138 (312)
T pfam02384 123 DKKFDVVVA--NPPFNQK 138 (312)
T ss_pred CCCCCEEEE--CCCCCCC
T ss_conf 455118983--7864667
No 215
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=21.37 E-value=59 Score=13.54 Aligned_cols=39 Identities=15% Similarity=0.231 Sum_probs=27.8
Q ss_pred CEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEH
Q ss_conf 318997099888484764679999999988988999954
Q gi|254780696|r 5 RNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTP 43 (316)
Q Consensus 5 ~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~ 43 (316)
.++++++..-..-.++...++.++..|...|++|.++-.
T Consensus 3 ~~v~i~~t~G~~~~~r~ya~f~~A~~a~smg~dV~iF~t 41 (120)
T COG2044 3 DKVLIVVTSGPNNPERAYAPFVMATAAASMGYDVTIFFT 41 (120)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 558999815999879998699999999867995699998
No 216
>COG1871 CheD Chemotaxis protein; stimulates methylation of MCP proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=21.11 E-value=58 Score=13.60 Aligned_cols=34 Identities=15% Similarity=0.198 Sum_probs=27.7
Q ss_pred ECCHHHHHHHHHHHH-HHHHHCCCCCCCCCEEEEC
Q ss_conf 037245568888521-4331116885434468744
Q gi|254780696|r 143 SRDITQITRFYLEMK-DIIIKPLYGNGGTGVFRIT 176 (316)
Q Consensus 143 t~~~~~~~~f~~~~~-~vViKPl~g~~G~gV~~i~ 176 (316)
.+|.+.+++|+++.+ |++-+-+.|..|+-|++--
T Consensus 113 ~rNv~~~~~~L~~~~IpilaeD~Gg~~gR~i~F~p 147 (164)
T COG1871 113 ERNVEFAKEFLKDEGIPILAEDTGGDSGRTIEFNP 147 (164)
T ss_pred HHHHHHHHHHHHHCCCCEEEHHHCCCCCCEEEEEC
T ss_conf 67799999999985990786420898773799955
No 217
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain; InterPro: IPR005974 The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene. Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes. It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model IPR005972 from INTERPRO.; GO: 0016163 nitrogenase activity, 0051536 iron-sulfur cluster binding, 0009399 nitrogen fixation.
Probab=21.01 E-value=49 Score=14.06 Aligned_cols=11 Identities=45% Similarity=0.848 Sum_probs=6.1
Q ss_pred CCHHHHHHHHH
Q ss_conf 22479999999
Q gi|254780696|r 94 FNMHYITSTYL 104 (316)
Q Consensus 94 ~d~~yi~~~~~ 104 (316)
|++.|+++|-+
T Consensus 100 FnlKY~~~TD~ 110 (468)
T TIGR01284 100 FNLKYVYATDL 110 (468)
T ss_pred CCEEEEEEECC
T ss_conf 00016885023
No 218
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=20.97 E-value=60 Score=13.49 Aligned_cols=12 Identities=17% Similarity=0.086 Sum_probs=5.5
Q ss_pred HHHHHHHHCCCE
Q ss_conf 999999988988
Q gi|254780696|r 26 AIALEAQVRGYQ 37 (316)
Q Consensus 26 ~Lm~eAq~RGhe 37 (316)
++.++..+.|.+
T Consensus 32 ~i~~A~~el~~~ 43 (306)
T PRK05778 32 AFIQALAELGLD 43 (306)
T ss_pred HHHHHHHHCCCC
T ss_conf 999999980999
No 219
>TIGR02693 arsenite_ox_L arsenite oxidase, large subunit; InterPro: IPR014066 This entry represents the large subunit of an arsenite oxidase complex. The small subunit is a Rieske protein. This enzyme acts in energy metabolism by arsenite oxidation, rather than detoxification by reduction of arsenate to arsenite prior to export ..
Probab=20.93 E-value=60 Score=13.48 Aligned_cols=210 Identities=20% Similarity=0.296 Sum_probs=96.4
Q ss_pred CCHHHHHHHHHHHHH------CCCCEEECCHHHHHHCCC-HHHHHHHH----HHCCCC-EEEC-CHHHHHHHHHHHHHHH
Q ss_conf 224799999999862------358504117488752565-03433454----304431-0003-7245568888521433
Q gi|254780696|r 94 FNMHYITSTYLLEKI------NPETLIVNNPFWIRNSPE-KIFVTEFS----ELMPPT-LISR-DITQITRFYLEMKDII 160 (316)
Q Consensus 94 ~d~~yi~~~~~Le~~------~~~~~viN~p~~i~~~~e-Kl~~~~~~----~~~P~T-~vt~-~~~~~~~f~~~~~~vV 160 (316)
+|++||...-+-|-. +..++-=-+|.-+-.|-| |.-+++++ +++-.. -||. |.++|++. -+++
T Consensus 322 ~d~~fi~~~tlreGtarPPlyParGvseanP~h~~~FEdyavk~~~mSvPydef~a~a~rITGvs~a~i~kA----AeWi 397 (858)
T TIGR02693 322 VDKEFIDKRTLREGTARPPLYPARGVSEANPTHLTLFEDYAVKSLKMSVPYDEFLAEAERITGVSEAEIEKA----AEWI 397 (858)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHH----HHHC
T ss_conf 348999876531366788876545555577765440233323110036766899999865278888999999----8640
Q ss_pred HHCCCCCCCCCEEEECCC-----CCCHH---HHHHHHHHHCC--CC---CC----EEE-CC--CC-----CCCC----CE
Q ss_conf 111688543446874488-----71158---89999984001--33---40----021-05--34-----4568----26
Q gi|254780696|r 161 IKPLYGNGGTGVFRITLG-----DRNFS---SLIEMLFEKYP--EP---LM----IQS-YL--PQ-----IRDG----DK 211 (316)
Q Consensus 161 iKPl~g~~G~gV~~i~~~-----~~~~~---~~~e~~~~~~~--~~---ii----~Qe-fi--~~-----~~~g----D~ 211 (316)
.||-.|-.-+-++.+.++ .+|++ +++++.....+ +| ++ =|| |+ |. +..| -+
T Consensus 398 ~kPKaggk~rRtm~~YEKGiIWg~dNY~~~~alv~La~aT~NiGRpGtGcvR~GGHQEGYVRPp~PtPGs~h~ggp~~yV 477 (858)
T TIGR02693 398 AKPKAGGKKRRTMTIYEKGIIWGNDNYDIVAALVDLAVATQNIGRPGTGCVRLGGHQEGYVRPPAPTPGSIHRGGPKVYV 477 (858)
T ss_pred CCCCCCCCCCCEEEEEECCEEECCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCEECCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 37634687652466652311417620346789999999844867478753504861046231866668753258874032
Q ss_pred EEEEECCE-----EEEE-----------EEEECCC-CC-CCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHC--CCEEE
Q ss_conf 99998998-----8632-----------1220456-86-0000001473111007789999999999999984--98799
Q gi|254780696|r 212 RILLLNGK-----PVGA-----------VNRIPSE-VD-NRSNIHAGGKAELTKLTKIDLDICKRIGESLRER--GLFFT 271 (316)
Q Consensus 212 Rv~vi~g~-----~v~a-----------~~R~~~~-~~-~r~Nl~~Gg~~~~~~lt~~~~~i~~~~~~~L~~~--gl~~~ 271 (316)
==++|.|| ++|| ++|+..+ .+ .+--+++|+. +-+ ..+.+..|...+... ||+.+
T Consensus 478 D~~lI~GkG~~~~~~gcd~y~tt~Naq~fr~v~~~Rt~~vkdAmsaa~~--Pg~----~~e~v~~I~Da~~qgPdgLF~v 551 (858)
T TIGR02693 478 DQLLIEGKGKVYTVWGCDNYKTTLNAQVFRKVIKKRTEIVKDAMSAAGE--PGT----IEEMVDKILDALSQGPDGLFVV 551 (858)
T ss_pred EEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC--CCC----HHHHHHHHHHHHCCCCCEEEEE
T ss_conf 1013327560799983487667545799999988777899999743888--867----8999888775540698636899
Q ss_pred EEEEEC------CEEE-------EEECCCCHHHHHHHHHCC------------CCHHHHHHHHHHHH
Q ss_conf 995117------8788-------983688303788997519------------99899999999886
Q gi|254780696|r 272 GIDVIG------DYIT-------EINVTSPTCIREIHRNGG------------ENVASLFWDGIEKI 313 (316)
Q Consensus 272 GiDiig------~~i~-------EvNvtsP~g~~~~~~~~~------------~~i~~~i~d~ie~~ 313 (316)
-+||+- -.|+ |.|.||-.|-....+++. --|++.+..-|+++
T Consensus 552 ~~diypTk~~eaaHliLPAA~~GE~NlTS~NgneRrmRL~EkfMDpPG~a~PDclIaa~~ant~~~~ 618 (858)
T TIGR02693 552 VVDIYPTKLAEAAHLILPAAGSGEMNLTSMNGNERRMRLSEKFMDPPGEALPDCLIAAKVANTLKEL 618 (858)
T ss_pred EECCCCCHHHHHHCEECCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 7402123122434022467888753232236554200000002587788884289999999999999
No 220
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=20.78 E-value=61 Score=13.46 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=23.2
Q ss_pred EEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEEC
Q ss_conf 1100778999999999999998498799995117
Q gi|254780696|r 244 ELTKLTKIDLDICKRIGESLRERGLFFTGIDVIG 277 (316)
Q Consensus 244 ~~~~lt~~~~~i~~~~~~~L~~~gl~~~GiDiig 277 (316)
..+...++...-|.+++..|++.|.... +|+-|
T Consensus 329 ~~v~~~~~~~~~a~~~a~~LR~~G~~v~-~~l~~ 361 (388)
T PRK12292 329 LLILAPWERLEAALAAAQALRKKGEIVV-LALPG 361 (388)
T ss_pred EEEECCHHHHHHHHHHHHHHHHCCCEEE-EECCC
T ss_conf 9998586769999999999997798899-98999
No 221
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=20.76 E-value=61 Score=13.46 Aligned_cols=101 Identities=16% Similarity=0.125 Sum_probs=48.3
Q ss_pred CEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEEEHHHEEE---ECCEEEEEEEEEEEECCC-C---------CEEE
Q ss_conf 31899709988848476467999999998898899995412489---998999999999980777-4---------1265
Q gi|254780696|r 5 RNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYM---RDSKIYANTQPLSLDEKK-E---------QYYS 71 (316)
Q Consensus 5 ~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~~---~~g~v~A~~~~i~i~~~~-~---------~~f~ 71 (316)
|||+++.- ..-=+.++...-.+||+|.-++.+.=-+ ++|+.. +.+.. . ..+.
T Consensus 1 MkI~ViGl--------GyVGl~~a~~lA~~G~~V~g~D~d~~~i~~l~~g~~p-------~~E~gl~~ll~~~~~~~~l~ 65 (411)
T TIGR03026 1 MKIAVIGL--------GYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSP-------IYEPGLDELLAKALAAGRLR 65 (411)
T ss_pred CEEEEECC--------CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHCCCCC-------CCCCCHHHHHHHHHHCCCEE
T ss_conf 97999897--------8779999999994899489998999999999779899-------78989899999998639979
Q ss_pred ECCCCCCCHHHCCEEEEECCCCC------CHHHHHH-HH-HHHHHCCCCEEECCHHH
Q ss_conf 04644352100636688328862------2479999-99-99862358504117488
Q gi|254780696|r 72 LGEEKIIDLSQMDVILIRQDPPF------NMHYITS-TY-LLEKINPETLIVNNPFW 120 (316)
Q Consensus 72 ~~~~~~~~L~~fD~i~iR~dPp~------d~~yi~~-~~-~Le~~~~~~~viN~p~~ 120 (316)
......-.+.+.|++|+=...|. |.+|+.. .. +...+.++..|+..++.
T Consensus 66 ~ttd~~~~i~~~dii~I~V~TP~~~~g~~d~s~l~~a~~~i~~~l~~~~lvii~STV 122 (411)
T TIGR03026 66 ATTDYEDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTV 122 (411)
T ss_pred EECCHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 987889987209999997689866688721389999999999766899989995786
No 222
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I; InterPro: IPR011913 RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (IPR011914 from INTERPRO) adds ADP to yield ADP-D-glycero-D-manno-heptose .; GO: 0016773 phosphotransferase activity alcohol group as acceptor, 0016779 nucleotidyltransferase activity, 0005975 carbohydrate metabolic process.
Probab=20.67 E-value=61 Score=13.45 Aligned_cols=173 Identities=17% Similarity=0.222 Sum_probs=90.7
Q ss_pred EEEEECCHHHCCCCCCCHHHHHHHHHHCCCE---EEEEEHHHEEEECCEEEEE-EEEE-EEECCCCCEEEECC------C
Q ss_conf 8997099888484764679999999988988---9999541248999899999-9999-98077741265046------4
Q gi|254780696|r 7 IAIQMNHISTVKVKEDSTFAIALEAQVRGYQ---IFHYTPDQLYMRDSKIYAN-TQPL-SLDEKKEQYYSLGE------E 75 (316)
Q Consensus 7 I~fimDpi~~i~~~~DTT~~Lm~eAq~RGhe---V~~~~~~dL~~~~g~v~A~-~~~i-~i~~~~~~~f~~~~------~ 75 (316)
++++.|+-+.- .|-.-.+..|.+ -+...++.-+..--++.|+ -+-+ +++....+.+.-.+ .
T Consensus 67 ~GvVG~D~~g~--------~L~~ll~~~g~~~~~~l~~d~~rpT~~K~Rv~a~~~QQllR~D~E~~~~~~~~~~~~L~~~ 138 (321)
T TIGR02198 67 VGVVGDDEAGK--------ALEALLKEEGIDDTSGLIRDKSRPTTTKTRVLARANQQLLRVDFEERKPINAEEEARLLAA 138 (321)
T ss_pred EEEECCCHHHH--------HHHHHHHHCCCCCCCCEEEECCCCCEEEEEEEECCCEEEEEEEEECCCCCCHHHHHHHHHH
T ss_conf 97733683899--------9999997458643300277689894488888604650589974102776897789999999
Q ss_pred CCCCHHHCCEEEEECCCCCCHHH----HHH---HHHHHHH-CCCCEEECCHHHHHHCCCHHHHHHHHHHCCCCEEECCHH
Q ss_conf 43521006366883288622479----999---9999862-358504117488752565034334543044310003724
Q gi|254780696|r 76 KIIDLSQMDVILIRQDPPFNMHY----ITS---TYLLEKI-NPETLIVNNPFWIRNSPEKIFVTEFSELMPPTLISRDIT 147 (316)
Q Consensus 76 ~~~~L~~fD~i~iR~dPp~d~~y----i~~---~~~Le~~-~~~~~viN~p~~i~~~~eKl~~~~~~~~~P~T~vt~~~~ 147 (316)
-.-.|..+|+|+.= +| |+. ..+=..+ +.+..|+=||++ -.|..|.=-|++|-|..
T Consensus 139 ~~~~l~~~d~VvLS-------DYaKGvLt~~v~~~~I~~Ar~~~~pVlVDPKg----------~df~~Y~GAtl~TPN~~ 201 (321)
T TIGR02198 139 IKEQLASADAVVLS-------DYAKGVLTPSVVQEVIAAAREAGKPVLVDPKG----------KDFSRYRGATLITPNRK 201 (321)
T ss_pred HHHHHCCCCEEEEE-------ECCCCCCCHHHHHHHHHHHHHCCCCEEEECCC----------CCHHHHCCCCCCCCCHH
T ss_conf 99972328789998-------66876358578999999999668919980787----------62345146642366879
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEE--CCEEEE--E
Q ss_conf 556888852143311168854344687448871158899999840013340021053445682699998--998863--2
Q gi|254780696|r 148 QITRFYLEMKDIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLL--NGKPVG--A 223 (316)
Q Consensus 148 ~~~~f~~~~~~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi--~g~~v~--a 223 (316)
|+.+... .|| + .+.+|.++...-+.+.+.+.- +++ =+.+|+.=.-++ |+++++ |
T Consensus 202 E~~~avG------~~~--------~--~~~~~~~~~~aa~~L~~~~~l-----~al-LvTRsE~GMtL~~~~~~~~H~Pa 259 (321)
T TIGR02198 202 EAEAAVG------IKF--------I--ACENEAELVKAAEKLLEELDL-----EAL-LVTRSEKGMTLFTREGEPIHIPA 259 (321)
T ss_pred HHHHHHC------CCC--------H--HCCCCHHHHHHHHHHHHHCCC-----CEE-EEEECCCCCEEECCCCCEEEECC
T ss_conf 9999858------870--------1--105817899999999997099-----679-99507762066768996266035
Q ss_pred EEE
Q ss_conf 122
Q gi|254780696|r 224 VNR 226 (316)
Q Consensus 224 ~~R 226 (316)
..|
T Consensus 260 ~A~ 262 (321)
T TIGR02198 260 QAR 262 (321)
T ss_pred CCE
T ss_conf 410
No 223
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=20.57 E-value=61 Score=13.43 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=18.4
Q ss_pred CHHHHHHHHHHCCCEEEEEEH
Q ss_conf 679999999988988999954
Q gi|254780696|r 23 STFAIALEAQVRGYQIFHYTP 43 (316)
Q Consensus 23 TT~~Lm~eAq~RGheV~~~~~ 43 (316)
.|-+|+++.+++|+.+.++-|
T Consensus 19 vsaaL~~~l~~~G~~v~~~KP 39 (231)
T PRK12374 19 VSRALLQALASQGKSVAGYKP 39 (231)
T ss_pred HHHHHHHHHHHCCCCEEEEEE
T ss_conf 999999999978994888856
No 224
>KOG1403 consensus
Probab=20.54 E-value=24 Score=16.08 Aligned_cols=77 Identities=29% Similarity=0.419 Sum_probs=36.8
Q ss_pred EEECCCCCCCCCEEEEEECCEEEEEEEE-ECCCCCCCC------CCCCCCCEEEEECCHHHHH---------HHHHHHHH
Q ss_conf 0210534456826999989988632122-045686000------0001473111007789999---------99999999
Q gi|254780696|r 199 IQSYLPQIRDGDKRILLLNGKPVGAVNR-IPSEVDNRS------NIHAGGKAELTKLTKIDLD---------ICKRIGES 262 (316)
Q Consensus 199 ~Qefi~~~~~gD~Rv~vi~g~~v~a~~R-~~~~~~~r~------Nl~~Gg~~~~~~lt~~~~~---------i~~~~~~~ 262 (316)
.|.|||++.- .---+=||-|++|+.- .+-..-|-+ | .-||.+..|..--.... -+.++++.
T Consensus 267 ~y~fiPDIVt--mgKpmGNGhPVa~VattkeIA~Af~atgv~YFN-TyGGnPVsCAv~laVm~v~e~E~Lq~ha~~vG~~ 343 (452)
T KOG1403 267 TYNFIPDIVT--MGKPMGNGHPVAAVATTKEIAQAFHATGVEYFN-TYGGNPVSCAVGLAVMRVCEDENLQEHAQQVGEK 343 (452)
T ss_pred HHCCCCCHHE--ECCCCCCCCEEEEEECCHHHHHHHCCCCCEEHH-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5245643300--046577997026885368899985026600000-4699806589999999997456677889988799
Q ss_pred H-----------------HHCCCEEEEEEEECCE
Q ss_conf 9-----------------9849879999511787
Q gi|254780696|r 263 L-----------------RERGLFFTGIDVIGDY 279 (316)
Q Consensus 263 L-----------------~~~gl~~~GiDiig~~ 279 (316)
| ++-|| |.|||++.|.
T Consensus 344 L~~lL~~~k~kh~~IGDvRGvGL-FiGIdLVkD~ 376 (452)
T KOG1403 344 LEVLLRRLKQKHECIGDVRGVGL-FIGIDLVKDR 376 (452)
T ss_pred HHHHHHHHHHHCCCEECCCCCEE-EEEEEEECCC
T ss_conf 99999987650613101333227-8852000111
No 225
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=20.39 E-value=62 Score=13.41 Aligned_cols=18 Identities=6% Similarity=-0.075 Sum_probs=11.4
Q ss_pred CCCHHHHHHHHHHCCCEE
Q ss_conf 646799999999889889
Q gi|254780696|r 21 EDSTFAIALEAQVRGYQI 38 (316)
Q Consensus 21 ~DTT~~Lm~eAq~RGheV 38 (316)
-+.+...++.+.+.|+--
T Consensus 23 ~~~~~~~~~~~~~~G~Ga 40 (333)
T PRK07565 23 LTESLDNVKRLEDAGAGA 40 (333)
T ss_pred CCCCHHHHHHHHHCCCEE
T ss_conf 799999999999859619
No 226
>PRK08338 2-oxoglutarate ferredoxin oxidoreductase subunit gamma; Validated
Probab=20.39 E-value=62 Score=13.41 Aligned_cols=78 Identities=13% Similarity=0.271 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCCHHHCCEEEEECCCCCCHHHHHHH
Q ss_conf 67999999998898899995412489998999999999980777412650464435210063668832886224799999
Q gi|254780696|r 23 STFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQMDVILIRQDPPFNMHYITST 102 (316)
Q Consensus 23 TT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~L~~fD~i~iR~dPp~d~~yi~~~ 102 (316)
++-.|.++|.+.|+.+..+..-....++|.+++.. .+.+.+ .+. ....+.|+++. ||. ....
T Consensus 16 ag~iLa~aa~~~G~~v~~~~~yg~~~RGG~~~s~V---risd~~--I~~------~~~~~~Dilva-----l~~--~~~~ 77 (170)
T PRK08338 16 AGVILGEAAAIEGLNVLQTQDYSSASRGGHSIADV---IISKEE--IYD------VMVTEADVLVA-----LHQ--LGYE 77 (170)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCHHHCCCCEEEEE---EECCCE--ECC------CCCCCCCEEEE-----CCH--HHHH
T ss_conf 99999999997797499832327255188227999---986956--358------66799989999-----288--9999
Q ss_pred HHHHHHCCCC-EEECCH
Q ss_conf 9998623585-041174
Q gi|254780696|r 103 YLLEKINPET-LIVNNP 118 (316)
Q Consensus 103 ~~Le~~~~~~-~viN~p 118 (316)
...+.+..++ .|+|+.
T Consensus 78 ~~~~~lk~~g~vi~d~~ 94 (170)
T PRK08338 78 TAKSKLKEDGLLIIDTD 94 (170)
T ss_pred HHHCCCCCCEEEEECCC
T ss_conf 88646498969998488
No 227
>PRK10949 protease 4; Provisional
Probab=20.22 E-value=62 Score=13.39 Aligned_cols=13 Identities=15% Similarity=0.360 Sum_probs=7.6
Q ss_pred CEEEEEECCEEEE
Q ss_conf 2699998998863
Q gi|254780696|r 210 DKRILLLNGKPVG 222 (316)
Q Consensus 210 D~Rv~vi~g~~v~ 222 (316)
-+-|+++.|.++.
T Consensus 327 ~IAVI~a~G~Iv~ 339 (618)
T PRK10949 327 QIAVIFANGAIMD 339 (618)
T ss_pred EEEEEEEEEEEEC
T ss_conf 3899996876854
No 228
>TIGR00868 hCaCC calcium-activated chloride channel protein 1; InterPro: IPR004727 This entry represents a family of Ca(2+)-regulated chloride channels (CLCA) which includes bovine, murine and human proteins , . Each CLCA exhibits a distinct, often overlapping, tissue expression pattern. With the exception of the truncated, secreted protein hCLCA3 , they are synthesized as an approximately 125 kDa precursor transmembrane glycoprotein that is rapidly cleaved into 90 and 35 kDa subunits. The human proteins have been shown to affect a large number of cell functions including chloride conductance, epithelial secretion, cell-cell adhesion, apoptosis, cell cycle control, mucus production in asthma, and blood pressure. The CLCA proteins expressed on the luminal surface of lung vascular endothelia (bCLCA2; mCLCA1; hCLCA2) serve as adhesion molecules for lung metastatic cancer cells, mediating vascular arrest and lung colonization. Expression of hCLCA2 in normal mammary epithelium is consistently lost in human breast cancer and in all tumorigenic breast cancer cell lines. Re-expression of hCLCA2 in human breast cancer cells abrogates tumorigenicity in nude mice, implying that hCLCA2 acts as a tumour suppressor in breast cancer..
Probab=20.09 E-value=55 Score=13.76 Aligned_cols=65 Identities=22% Similarity=0.372 Sum_probs=38.0
Q ss_pred CCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEECCE---EEEEEEEECCCCCCCCCCCC
Q ss_conf 168854344687448871158899999840013340021053445682699998998---86321220456860000001
Q gi|254780696|r 163 PLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGK---PVGAVNRIPSEVDNRSNIHA 239 (316)
Q Consensus 163 Pl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~g~---~v~a~~R~~~~~~~r~Nl~~ 239 (316)
|-..+||.+|.. + +...++ +|.|.+-. .+|===|++=||| +-+|+.-+.+.|-..+-+|.
T Consensus 379 P~~a~GGTSIC~---G---l~~aFq---------~I~~~~~~--t~GSEi~LLTDGEDN~i~sC~~eVkqsGaIiHtiAL 441 (874)
T TIGR00868 379 PTEASGGTSICS---G---LKAAFQ---------VIKKSDQS--TDGSEIVLLTDGEDNTISSCIEEVKQSGAIIHTIAL 441 (874)
T ss_pred CCCCCCCCHHHH---H---HHHHHH---------HHHHCCCC--CCCCEEEEEECCCCCCEEECHHHHHCCCEEEEEEEC
T ss_conf 787876803656---6---766654---------33312666--675369983068757623130554109808998507
Q ss_pred CCCEE
Q ss_conf 47311
Q gi|254780696|r 240 GGKAE 244 (316)
Q Consensus 240 Gg~~~ 244 (316)
|-.|.
T Consensus 442 GpsAa 446 (874)
T TIGR00868 442 GPSAA 446 (874)
T ss_pred CHHHH
T ss_conf 84589
No 229
>pfam01210 NAD_Gly3P_dh_N NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus. NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain.
Probab=20.04 E-value=63 Score=13.36 Aligned_cols=122 Identities=13% Similarity=0.161 Sum_probs=55.8
Q ss_pred HHHHHHHHCCCEEEEEEHHHEEEE---CCEEEE-EEEEEEEECCCCCEEEECCCCCCCHHHCCEEEEECCCCCCHHHHHH
Q ss_conf 999999988988999954124899---989999-9999998077741265046443521006366883288622479999
Q gi|254780696|r 26 AIALEAQVRGYQIFHYTPDQLYMR---DSKIYA-NTQPLSLDEKKEQYYSLGEEKIIDLSQMDVILIRQDPPFNMHYITS 101 (316)
Q Consensus 26 ~Lm~eAq~RGheV~~~~~~dL~~~---~g~v~A-~~~~i~i~~~~~~~f~~~~~~~~~L~~fD~i~iR~dPp~d~~yi~~ 101 (316)
+|...+.+.||+|..+.-+.-.+. ...... ....+.+.+ . ........-.+.+.|++++=. | ..++..
T Consensus 14 Ala~~la~n~~~V~l~~r~~~~~~~i~~~~~n~~~lp~~~l~~--~--i~~~~dl~~a~~~adiIiiav-p---s~~~~~ 85 (159)
T pfam01210 14 ALAKVLARNGHEVRLWGRDEELIEEINTTRENVKYLPGIKLPD--N--LRATTDLEEAIKGADIIVLAV-P---SQALRE 85 (159)
T ss_pred HHHHHHHHCCCEEEEEEECCHHHHHHHHCCCCCHHCCCCCCCC--C--EEECCCHHHHHHCCCEEEEEC-C---HHHHHH
T ss_conf 9999999879989999904366677886697821047864555--3--054288999983798999917-4---889999
Q ss_pred H-H-HHHHHCCCCEEECCHHHHHHCCCHHHHHHHHHHCCCC--EEECCHHHHHHHHHH
Q ss_conf 9-9-9986235850411748875256503433454304431--000372455688885
Q gi|254780696|r 102 T-Y-LLEKINPETLIVNNPFWIRNSPEKIFVTEFSELMPPT--LISRDITQITRFYLE 155 (316)
Q Consensus 102 ~-~-~Le~~~~~~~viN~p~~i~~~~eKl~~~~~~~~~P~T--~vt~~~~~~~~f~~~ 155 (316)
. . +-..+..+..+++-.+++..-..++.+.-+.+.+|.. .+.+.|.-+.+..+.
T Consensus 86 ~~~~i~~~~~~~~~iv~~sKGie~~t~~~~s~i~~~~~~~~~~~vlsGPs~A~Ev~~~ 143 (159)
T pfam01210 86 VLKQLKGLLSPGAILVSLTKGIEPGTLKLLSEIIEEELPINPIAVLSGPSHAEEVALG 143 (159)
T ss_pred HHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCEEEEECCCHHHHHHCC
T ss_conf 9999986557655688875144278875299999987899873999578649999748
Done!