HHsearch alignment for GI: 254780696 and conserved domain: pfam02786
>pfam02786 CPSase_L_D2 Carbamoyl-phosphate synthase L chain, ATP binding domain. Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117. The ATP binding domain (this one) has an ATP-grasp fold.
Probab=99.20 E-value=8e-10 Score=84.79 Aligned_cols=162 Identities=17% Similarity=0.180 Sum_probs=99.3
Q ss_pred HCCCC--EEECCHHHHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHH-----HCCCCCCEEECCCCCC
Q ss_conf 04431--00037245568888521-4331116885434468744887115889999984-----0013340021053445
Q gi|254780696|r 136 LMPPT--LISRDITQITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFE-----KYPEPLMIQSYLPQIR 207 (316)
Q Consensus 136 ~~P~T--~vt~~~~~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~-----~~~~~ii~Qefi~~~~ 207 (316)
T Consensus 15 P~~~~~~~~~~s~ee~~~~a~~iG~PvvvKp~~~g~g~G~~~v~~-~~eL~~a~~~a~~~a~~~~~~~~vlvEe~i~g~- 92 (211)
T pfam02786 15 PTVPGTAGPVETEEEALAAAKEIGYPVIIKAAFGGGGLGMGIARN-EEELAELFALALAEAPAAFGNPQVLVEKSLKGP- 92 (211)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCEEEHH-HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCC-
T ss_conf 919987888799999999999859978997377789987512412-778999999998751431699838997404776-
Q ss_pred CCCEEEEEEC---CEEEEEEEEECCCCCCCCCCCCCCCEE--EE-ECCHHHH----HHHHHHHHHHHHCCCE-EEEEEEE
Q ss_conf 6826999989---988632122045686000000147311--10-0778999----9999999999984987-9999511
Q gi|254780696|r 208 DGDKRILLLN---GKPVGAVNRIPSEVDNRSNIHAGGKAE--LT-KLTKIDL----DICKRIGESLRERGLF-FTGIDVI 276 (316)
Q Consensus 208 ~gD~Rv~vi~---g~~v~a~~R~~~~~~~r~Nl~~Gg~~~--~~-~lt~~~~----~i~~~~~~~L~~~gl~-~~GiDii 276 (316)
T Consensus 93 -~ei~v~v~~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~Pa~~l~~~~~e~i~~~a~~~~~~l---g~~G~~~vef~ 163 (211)
T pfam02786 93 -KHIEYQVLRDAHGNCITVCNRECSDQ-----RRTQKSIEVAPSQTLTDEERQMLREAAVKIARHL---GYVGAGTVEFA 163 (211)
T ss_pred -EEEEEEEEEECCCCEEEEEEEEEEEE-----CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHC---CEECCCEEEEE
T ss_conf -58999999827998999996332250-----3358444681799999999999999999987526---44233247899
Q ss_pred ----CC--EEEEEECCCCHHHH-HHHHHCCCCHHHHHHHH
Q ss_conf ----78--78898368830378-89975199989999999
Q gi|254780696|r 277 ----GD--YITEINVTSPTCIR-EIHRNGGENVASLFWDG 309 (316)
Q Consensus 277 ----g~--~i~EvNvtsP~g~~-~~~~~~~~~i~~~i~d~ 309 (316)
T Consensus 164 ~~~~~~~~~~iEvN-pR~~~~~~~t~~~tg~~l~~~~~~~ 202 (211)
T pfam02786 164 LDPFSGEYYFIEMN-TRLQVSHALAEKATGYDLAKEAAKI 202 (211)
T ss_pred EECCCCEEEEEECC-CCCCCHHHHHHHHHCCCHHHHHHHH
T ss_conf 96799959999670-8968347788998794899999999