HHsearch alignment for GI: 254780696 and conserved domain: pfam07478
>pfam07478 Dala_Dala_lig_C D-ala D-ala ligase C-terminus. This family represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme EC:6.3.2.4. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF).
Probab=99.54 E-value=6.7e-13 Score=104.94 Aligned_cols=162 Identities=17% Similarity=0.245 Sum_probs=108.6
Q ss_pred HCCCCEEECCHH----HHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCC
Q ss_conf 044310003724----5568888521-43311168854344687448871158899999840013340021053445682
Q gi|254780696|r 136 LMPPTLISRDIT----QITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGD 210 (316)
Q Consensus 136 ~~P~T~vt~~~~----~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD 210 (316)
T Consensus 8 ptp~~~~v~~~~~~~~~~~~i~~~lg~P~vvKP~~~gss~Gv~~v~-~~~el~~~i~~~~~-~~~~vlVEefi~---G~E 82 (201)
T pfam07478 8 PVAPFIVLTREDWVLATIEKVEEKLGYPVFVKPANLGSSVGISKVT-SREELQSAIEEAFQ-YDNKVLIEEAIE---GRE 82 (201)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEC-CHHHHHHHHHHHHH-CCCCEEEEECCC---CCE
T ss_conf 9999089825323435799999865998899989999866879995-84687999999874-598079998566---967
Q ss_pred EEEEEECC---EEEEEEEEECCCC--CCCCCCCCCCCE--EEEECCHHH----HHHHHHHHHHHHHCCC-EEEEEEEE--
Q ss_conf 69999899---8863212204568--600000014731--110077899----9999999999998498-79999511--
Q gi|254780696|r 211 KRILLLNG---KPVGAVNRIPSEV--DNRSNIHAGGKA--ELTKLTKID----LDICKRIGESLRERGL-FFTGIDVI-- 276 (316)
Q Consensus 211 ~Rv~vi~g---~~v~a~~R~~~~~--~~r~Nl~~Gg~~--~~~~lt~~~----~~i~~~~~~~L~~~gl-~~~GiDii-- 276 (316)
T Consensus 83 ~~v~vl~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~Pa~l~~~~~~~i~~~A~~~~~aL---g~~g~~rvD~~~d 159 (201)
T pfam07478 83 IECAVLGNEDLEVSPVGEIRLSGGFYDYEAKYILSSAQIIVPADLPEEVEEQIQELALKAYKAL---GCRGLARIDFFLT 159 (201)
T ss_pred EEEEEEECCCEEEEEEEEEECCCCEEEHHHEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHHH---CCCCCEEEEEEEC
T ss_conf 9999970898089875899437750267680136872376156685999999999999999984---8876057999996
Q ss_pred --C-CEEEEEECCCCH-----HHHHHHHHCCCCHHHHH
Q ss_conf --7-878898368830-----37889975199989999
Q gi|254780696|r 277 --G-DYITEINVTSPT-----CIREIHRNGGENVASLF 306 (316)
Q Consensus 277 --g-~~i~EvNvtsP~-----g~~~~~~~~~~~i~~~i 306 (316)
T Consensus 160 ~~g~~~vlEvN-~~Pg~~~~s~~~~~a~~~G~sy~~l~ 196 (201)
T pfam07478 160 EDGEIYLNEVN-TMPGFTSISLYPRMWAAAGLSYPDLI 196 (201)
T ss_pred CCCCEEEEEEC-CCCCCCCCCHHHHHHHHCCCCHHHHH
T ss_conf 89949999954-97999867699999998199999999