HHsearch results for GI: 254780696 and protein with PDBid: 1i7n_A
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=99.97 E-value=3.7e-31 Score=223.18 Aligned_cols=285 Identities=13% Similarity=0.084 Sum_probs=186.5
Q ss_pred CEEEEEECCHHHCCCCCCCHHHHHHHHHHCCCEEEEE--EHHHEEEE---CCEEEEEEEEEEEECCCCCEEEECCCCCCC
Q ss_conf 3189970998884847646799999999889889999--54124899---989999999999807774126504644352
Q gi|254780696|r 5 RNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHY--TPDQLYMR---DSKIYANTQPLSLDEKKEQYYSLGEEKIID 79 (316)
Q Consensus 5 ~kI~fimDpi~~i~~~~DTT~~Lm~eAq~RGheV~~~--~~~dL~~~---~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~ 79 (316)
.||++++| ++..|.+-.+.......++++..- ...++.+. ++... ..+..... ......
T Consensus 2 ~ki~lvid-----~~~~dw~k~f~~~~~~~~~~~~ve~~~~~~~~~~~~~~~~~~---v~~~~~~~--------~~~~~~ 65 (309)
T 1i7n_A 2 AKVLLVVD-----EPHTDWAKCFRGKKILGDYDIKVEQAEFSELNLVAHADGTYA---VDMQVLRN--------GTKVVR 65 (309)
T ss_dssp EEEEEEEC-----CTTSCHHHHHTTCEETTTEEEEEEEECGGGEEEEEETTSCEE---EEEEECSS--------SSSEEE
T ss_pred CEEEEEEC-----CCCCCHHHHHHCCHHCCCEEEEEEECCCCCHHHHHHHCCCEE---EEEEECCC--------CCCCCC
T ss_conf 46999975-----898567887310010460105887326431223223338728---99985167--------543310
Q ss_pred HHHCCEEEEECCCCCCHHHHHHHHHHHHHCC-CCEEECCHHHHHHCCCHHHHHHHHH----HCC-CCEEE---CCHHHHH
Q ss_conf 1006366883288622479999999986235-8504117488752565034334543----044-31000---3724556
Q gi|254780696|r 80 LSQMDVILIRQDPPFNMHYITSTYLLEKINP-ETLIVNNPFWIRNSPEKIFVTEFSE----LMP-PTLIS---RDITQIT 150 (316)
Q Consensus 80 L~~fD~i~iR~dPp~d~~yi~~~~~Le~~~~-~~~viN~p~~i~~~~eKl~~~~~~~----~~P-~T~vt---~~~~~~~ 150 (316)
....|++|+|..||+...+...+.+|..++. |+.|+|+|.+++.|.||.++.++.. .+| +++++ .+.....
T Consensus 66 ~~~~d~v~~r~~~~~~~~~~~~~~~l~~l~~~G~~vins~~ai~~~~dK~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~ 145 (309)
T 1i7n_A 66 SFRPDFVLIRQHAFGMAENEDFRHLVIGMQYAGLPSINSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQTYYPNHR 145 (309)
T ss_dssp EECCSEEEECSCCCCSSTTCCCHHHHHHHHHTTCCEESCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEEESSGG
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHH
T ss_conf 25797899887887301142599999999983998678389999863879999999972999998862105666378877
Q ss_pred HHHHHH-HHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEECCEEEEEEEEECC
Q ss_conf 888852-1433111688543446874488711588999998400133400210534456826999989988632122045
Q gi|254780696|r 151 RFYLEM-KDIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGKPVGAVNRIPS 229 (316)
Q Consensus 151 ~f~~~~-~~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~g~~v~a~~R~~~ 229 (316)
.+.... .|+|+||++|++|.||++++.. ..+...++.+ ..+...+++|+|++ ...|+|+.|+||++++++ |.+.
T Consensus 146 ~~~~~~~~P~vvKp~~g~~G~Gv~~v~~~-~~l~~~~~~~-~~~~~~v~ve~~i~--~~~d~rv~vi~~~~~~~~-~~~~ 220 (309)
T 1i7n_A 146 EMLTLPTFPVVVKIGHAHSGMGKVKVENH-YDFQDIASVV-ALTQTYATAEPFID--AKYDIRVQKIGNNYKAYM-RTSI 220 (309)
T ss_dssp GGSSCCCSSEEEEESSCSTTTTEEEECSH-HHHHHHHHHH-HHHTCCEEEEECCC--EEEEEEEEEETTEEEEEE-EESS
T ss_pred HHHHCCCCCEEEEECCCCCCCCEEEEECH-HHHHHHHHHH-HCCCCCEEEEEEEC--CCCEEEEEEECCEEEEEE-EEEC
T ss_conf 76522699989997988899887999655-8899999999-72398158987614--672589999999888999-9954
Q ss_pred CCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEE----C-CEEEEEECCCCHH-HHHHHHHCCCCHH
Q ss_conf 68600000014731110077899999999999999849879999511----7-8788983688303-7889975199989
Q gi|254780696|r 230 EVDNRSNIHAGGKAELTKLTKIDLDICKRIGESLRERGLFFTGIDVI----G-DYITEINVTSPTC-IREIHRNGGENVA 303 (316)
Q Consensus 230 ~~~~r~Nl~~Gg~~~~~~lt~~~~~i~~~~~~~L~~~gl~~~GiDii----g-~~i~EvNvtsP~g-~~~~~~~~~~~i~ 303 (316)
.++||+|.+.|+.. ...++++++++|.++++.+ .|+.++|||++ | .|++||| +||++ ..+.......+++
T Consensus 221 ~~~~~~n~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~gvD~~~~~dG~~yvlEvN-~~p~~~~~~~~~~~~~~i~ 296 (309)
T 1i7n_A 221 SGNWKTNTGSAMLE-QIAMSDRYKLWVDACSEMF--GGLDICAVKAVHGKDGKDYIFEVM-DCSMPLIGEHQVEDRQLIT 296 (309)
T ss_dssp CTTTSCSCCCSSEE-EECCCHHHHHHHHHHTTGG--GCCSEEEEEEEEETTSCEEEEEEE-CTTCCCCSSCHHHHHHHHH
T ss_pred CCCHHHCCCCCCCC-CCCCCHHHHHHHHHHHHHH--CCCCEEEEEEEECCCCCEEEEEEC-CCCCCCCHHHHHHHHHHHH
T ss_conf 66412120256434-6777769999999999985--899689999999699999999982-9883321145777762099
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999998863
Q gi|254780696|r 304 SLFWDGIEKIK 314 (316)
Q Consensus 304 ~~i~d~ie~~~ 314 (316)
+.+++.+++..
T Consensus 297 dlv~~~~~~~~ 307 (309)
T 1i7n_A 297 DLVISKMNQLL 307 (309)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
T ss_conf 99999999975