HHsearch results for GI: 254780696 and protein with PDBid: 1iow_A
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A*
Probab=99.80 E-value=7.9e-17 Score=129.27 Aligned_cols=270 Identities=16% Similarity=0.174 Sum_probs=171.1
Q ss_pred CCCCCEEEEEECCHHH-CCCCCCCHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEECCCCCCC
Q ss_conf 9653318997099888-484764679999999988988999954124899989999999999807774126504644352
Q gi|254780696|r 1 MKKIRNIAIQMNHIST-VKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIID 79 (316)
Q Consensus 1 mkk~~kI~fimDpi~~-i~~~~DTT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~~~~~~~~ 79 (316)
|+| ||+++.-=.+. -+.+-+|--++.++.++.||+++.+++.+..+. .+.
T Consensus 1 m~~--ki~vl~GG~S~E~~iSl~Sg~~i~~aL~~~g~~v~~id~~~~~~~---------------------------~l~ 51 (306)
T 1iow_A 1 MTD--KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVT---------------------------QLK 51 (306)
T ss_dssp CCC--EEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCGG---------------------------GTT
T ss_pred CCC--CEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHH---------------------------HHH
T ss_conf 985--099993858731286999999999999886998999899855488---------------------------886
Q ss_pred HHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCC-EEECCHHHHHHCCCHHHHHHHHH----HCCCCEEECCHH-------
Q ss_conf 100636688328862247999999998623585-04117488752565034334543----044310003724-------
Q gi|254780696|r 80 LSQMDVILIRQDPPFNMHYITSTYLLEKINPET-LIVNNPFWIRNSPEKIFVTEFSE----LMPPTLISRDIT------- 147 (316)
Q Consensus 80 L~~fD~i~iR~dPp~d~~yi~~~~~Le~~~~~~-~viN~p~~i~~~~eKl~~~~~~~----~~P~T~vt~~~~------- 147 (316)
-..+|++|.-.-=+...++ ..-.+||.+ +. ++-.+|.+...|.||..+-++.. ++|+..+....+
T Consensus 52 ~~~~d~vf~~~hG~~~ed~-~~~~~le~~--~ipy~Gs~~~~~~l~~dK~~~K~~~~~~gi~tp~~~~~~~~~~~~~~~~ 128 (306)
T 1iow_A 52 SMGFQKVFIALHGRGGEDG-TLQGMLELM--GLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSD 128 (306)
T ss_dssp TTTEEEEEECCCSTTTSSS-HHHHHHHHH--TCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCBCCEEEEEHHHHHHCCCT
T ss_pred HCCCCEEEEECCCCCCCCH-HHHHHHHHC--CCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHH
T ss_conf 4489889993468854137-999999987--9638258889999885918789987742688898577730110223047
Q ss_pred HHHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEECCEEEEEEEE
Q ss_conf 5568888521-433111688543446874488711588999998400133400210534456826999989988632122
Q gi|254780696|r 148 QITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGKPVGAVNR 226 (316)
Q Consensus 148 ~~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~g~~v~a~~R 226 (316)
......+..+ |+|+||.+|.+|.||.+++ +..++...++... .+...+++|+||+ +.++.|.++++.....+..
T Consensus 129 ~~~~~~~~l~~P~vvKP~~~g~s~Gi~~~~-~~~el~~~~~~~~-~~~~~~lvEefi~---G~E~~v~v~~~~~~~~~~i 203 (306)
T 1iow_A 129 KQLAEISALGLPVIVKPSREGSSVGMSKVV-AENALQDALRLAF-QHDEEVLIEKWLS---GPEFTVAILGEEILPSIRI 203 (306)
T ss_dssp HHHHHHHTTCSSEEEEETTCCTTTTCEEES-SGGGHHHHHHHHT-TTCSEEEEEECCC---CCEEEEEEETTEECCCEEE
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCCCC-CHHHHHHHHHHHH-HCCHHHHHHHCCC---CCEEEEEEECCCCCCEEEE
T ss_conf 788887612998899828988888851258-9999999999866-3483566764567---9779999855767876999
Q ss_pred ECCCCCCC--CCCCCCCCE--EEE----ECCHHHHHHHHHHHHHHHHCCC-EEEEEEEE----C-CEEEEEECCCCH---
Q ss_conf 04568600--000014731--110----0778999999999999998498-79999511----7-878898368830---
Q gi|254780696|r 227 IPSEVDNR--SNIHAGGKA--ELT----KLTKIDLDICKRIGESLRERGL-FFTGIDVI----G-DYITEINVTSPT--- 289 (316)
Q Consensus 227 ~~~~~~~r--~Nl~~Gg~~--~~~----~lt~~~~~i~~~~~~~L~~~gl-~~~GiDii----g-~~i~EvNvtsP~--- 289 (316)
.+.++-+. .....+... .+. .+.++.+++|.++...| |+ .++.||++ | .|++||| |.|+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~k~~~~l---g~~g~~riDf~~d~~g~~~~lEvN-~~Pglt~ 279 (306)
T 1iow_A 204 QPSGTFYDYEAKFLSDETQYFCPAGLEASQEANLQALVLKAWTTL---GCKGWGRIDVMLDSDGQFYLLEAN-TSPGMTS 279 (306)
T ss_dssp ECSSSSSCHHHHHTCSCCEEESSCCCCHHHHHHHHHHHHHHHHHH---TCCSEEEEEEEECTTSCEEEEEEE-SSCCCST
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH---CCCCEEEEEEEEECCCCEEEEEEE-CCCCCCC
T ss_conf 636764320001013433457777887677666899999999994---996479999999589989999864-9999887
Q ss_pred --HHHHHHHHCCCCHHHHHHHHHH
Q ss_conf --3788997519998999999998
Q gi|254780696|r 290 --CIREIHRNGGENVASLFWDGIE 311 (316)
Q Consensus 290 --g~~~~~~~~~~~i~~~i~d~ie 311 (316)
.+...-+.+|++.++.+-.-|+
T Consensus 280 ~s~~~~~~~~~G~~~~~li~~ii~ 303 (306)
T 1iow_A 280 HSLVPMAARQAGMSFSQLVVRILE 303 (306)
T ss_dssp TCHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 678999999829899999999998