HHsearch results for GI: 254780696 and protein with PDBid: 2i87_A
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 2i80_A*
Probab=99.77 E-value=1e-16 Score=128.49 Aligned_cols=286 Identities=13% Similarity=0.117 Sum_probs=163.9
Q ss_pred CCCCCEEEEEECCHHHCCCCCC----CHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEE----
Q ss_conf 9653318997099888484764----67999999998898899995412489998999999999980777412650----
Q gi|254780696|r 1 MKKIRNIAIQMNHISTVKVKED----STFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSL---- 72 (316)
Q Consensus 1 mkk~~kI~fimDpi~~i~~~~D----TT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~---- 72 (316)
|.| +||++++= ......+ |-.+++++..+.||+|+.+.... ++.-. ............+.+..
T Consensus 1 m~k-~~I~vl~G---G~S~E~~iSl~Sg~~v~~aL~~~g~~v~~i~i~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~ 71 (364)
T 2i87_A 1 MTK-ENICIVFG---GKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITN----DGDWR-KQNNITAEIKSTDELHLENGE 71 (364)
T ss_dssp --C-EEEEEEEE---CSSSCHHHHHHHHHHHHHTSCTTTEEEEEEEECT----TCCEE-EECCCCSCCCSGGGSCGGGSE
T ss_pred CCC-CEEEEEEC---CCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECC----CCCEE-ECCCCCHHHCCCCCCCCCCCC
T ss_conf 999-88999959---1875439999999999998777399799999848----98755-258741111157510237664
Q ss_pred ----CC--CCCCCHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCC-EEECCHHHHHHCCCHHHHHHHHH----HCCCCE
Q ss_conf ----46--44352100636688328862247999999998623585-04117488752565034334543----044310
Q gi|254780696|r 73 ----GE--EKIIDLSQMDVILIRQDPPFNMHYITSTYLLEKINPET-LIVNNPFWIRNSPEKIFVTEFSE----LMPPTL 141 (316)
Q Consensus 73 ----~~--~~~~~L~~fD~i~iR~dPp~d~~yi~~~~~Le~~~~~~-~viN~p~~i~~~~eKl~~~~~~~----~~P~T~ 141 (316)
.. ........+|++|+-.-.+...++.- -.+||.+ ++ ++-+++.+...|.||..+-++.+ ++|+++
T Consensus 72 ~~~~~~~~~~~~~~~~~D~v~~~~hG~~gedg~~-q~~le~~--~ipy~G~~~~a~~i~~DK~~~k~~l~~~gIptp~~~ 148 (364)
T 2i87_A 72 ALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTI-QGLFEVL--DVPYVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYI 148 (364)
T ss_dssp EECSSGGGGBCTTSSBCSEEEEECCCSSSCTTHH-HHHHHHH--TCCBSSCCHHHHHHHHSHHHHHHHHHHHTCCCCCEE
T ss_pred CCHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHH-HHHHHHC--CCCCCCCCHHHHHHCCHHHHHHHHHHHCCCCCCCEE
T ss_conf 1008888887752468888999267854326599-9999855--888347982454310038999999998699869866
Q ss_pred EECCHHH-------HHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEE
Q ss_conf 0037245-------568888521-43311168854344687448871158899999840013340021053445682699
Q gi|254780696|r 142 ISRDITQ-------ITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRI 213 (316)
Q Consensus 142 vt~~~~~-------~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv 213 (316)
+....+. +..+.++.+ |+|+||..|.+|.||.++. +..++...++...+ +...+++|+|++. .++-+
T Consensus 149 ~~~~~~~~~~~~~~l~~~~~~~~~PvvvKP~~~g~S~Gv~~v~-~~~el~~~i~~~~~-~~~~~lvEe~i~g---~E~~~ 223 (364)
T 2i87_A 149 SFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSVGISKCN-NEAELKEGIKEAFQ-FDRKLVIEQGVNA---REIEV 223 (364)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHCCSSEEEEESSCSSCTTCEEES-SHHHHHHHHHHHHT-TCSEEEEEECCCC---EEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEC-CHHHHHHHHHHHHH-CCHHHHHHCCCCC---EEEEE
T ss_conf 7613422200588999999762898699846777787616844-78999999999975-0845444304276---79999
Q ss_pred EEE--CCEEE-EEEEEECCCCCCCCCCC--CCCC--EEEEECC----HHHHHHHHHHHHHHHHCCC-EEEEEEEE----C
Q ss_conf 998--99886-32122045686000000--1473--1110077----8999999999999998498-79999511----7
Q gi|254780696|r 214 LLL--NGKPV-GAVNRIPSEVDNRSNIH--AGGK--AELTKLT----KIDLDICKRIGESLRERGL-FFTGIDVI----G 277 (316)
Q Consensus 214 ~vi--~g~~v-~a~~R~~~~~~~r~Nl~--~Gg~--~~~~~lt----~~~~~i~~~~~~~L~~~gl-~~~GiDii----g 277 (316)
.++ ++... .....++..+.+...-. .+.. ..+..++ ++.+++|.++.+.| |+ .+++||++ |
T Consensus 224 ~v~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~~~l---g~~g~~rvDf~~d~~g 300 (364)
T 2i87_A 224 AVLGNDYPEATWPGEVVKDVAFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKAT---DCSGLVRADFFVTEDN 300 (364)
T ss_dssp EEEESSSCEECCCEEECCSCCC-----------CCEESSCSSCHHHHHHHHHHHHHHHHHT---TCCEEEEEEEEECTTC
T ss_pred EEEECCCCCEEECEEEEECCCCCCHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHH---CCCEEEEEEEEEECCC
T ss_conf 8511356630001048721555554332034651350588889899999999999999980---9920899999995899
Q ss_pred -CEEEEEECCCCH-----HHHHHHHHCCCCHHHHHH
Q ss_conf -878898368830-----378899751999899999
Q gi|254780696|r 278 -DYITEINVTSPT-----CIREIHRNGGENVASLFW 307 (316)
Q Consensus 278 -~~i~EvNvtsP~-----g~~~~~~~~~~~i~~~i~ 307 (316)
.|++||| |.|| .+...-+..|++..+.+-
T Consensus 301 ~~yvlEvN-~~Pglt~~S~~~~~~~~~G~s~~~li~ 335 (364)
T 2i87_A 301 QIYINETN-AMPGFTAFSMYPKLWENMGLSYPELIT 335 (364)
T ss_dssp CEEEEEEE-SSCCCSTTSHHHHHHHHTTCCHHHHHH
T ss_pred CEEEEEEE-CCCCCCCCCHHHHHHHHCCCCHHHHHH
T ss_conf 79999861-989988555899999982999999999