HHsearch results for GI: 254780696 and protein with PDBid: 2i87_A

>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 2i80_A*
Probab=99.77  E-value=1e-16  Score=128.49  Aligned_cols=286  Identities=13%  Similarity=0.117  Sum_probs=163.9

Q ss_pred             CCCCCEEEEEECCHHHCCCCCC----CHHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEEEEEEEEECCCCCEEEE----
Q ss_conf             9653318997099888484764----67999999998898899995412489998999999999980777412650----
Q gi|254780696|r    1 MKKIRNIAIQMNHISTVKVKED----STFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSL----   72 (316)
Q Consensus         1 mkk~~kI~fimDpi~~i~~~~D----TT~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~~~~i~i~~~~~~~f~~----   72 (316)
                      |.| +||++++=   ......+    |-.+++++..+.||+|+.+....    ++.-. ............+.+..    
T Consensus         1 m~k-~~I~vl~G---G~S~E~~iSl~Sg~~v~~aL~~~g~~v~~i~i~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~   71 (364)
T 2i87_A            1 MTK-ENICIVFG---GKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITN----DGDWR-KQNNITAEIKSTDELHLENGE   71 (364)
T ss_dssp             --C-EEEEEEEE---CSSSCHHHHHHHHHHHHHTSCTTTEEEEEEEECT----TCCEE-EECCCCSCCCSGGGSCGGGSE
T ss_pred             CCC-CEEEEEEC---CCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECC----CCCEE-ECCCCCHHHCCCCCCCCCCCC
T ss_conf             999-88999959---1875439999999999998777399799999848----98755-258741111157510237664


Q ss_pred             ----CC--CCCCCHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCC-EEECCHHHHHHCCCHHHHHHHHH----HCCCCE
Q ss_conf             ----46--44352100636688328862247999999998623585-04117488752565034334543----044310
Q gi|254780696|r   73 ----GE--EKIIDLSQMDVILIRQDPPFNMHYITSTYLLEKINPET-LIVNNPFWIRNSPEKIFVTEFSE----LMPPTL  141 (316)
Q Consensus        73 ----~~--~~~~~L~~fD~i~iR~dPp~d~~yi~~~~~Le~~~~~~-~viN~p~~i~~~~eKl~~~~~~~----~~P~T~  141 (316)
                          ..  ........+|++|+-.-.+...++.- -.+||.+  ++ ++-+++.+...|.||..+-++.+    ++|+++
T Consensus        72 ~~~~~~~~~~~~~~~~~D~v~~~~hG~~gedg~~-q~~le~~--~ipy~G~~~~a~~i~~DK~~~k~~l~~~gIptp~~~  148 (364)
T 2i87_A           72 ALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTI-QGLFEVL--DVPYVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYI  148 (364)
T ss_dssp             EECSSGGGGBCTTSSBCSEEEEECCCSSSCTTHH-HHHHHHH--TCCBSSCCHHHHHHHHSHHHHHHHHHHHTCCCCCEE
T ss_pred             CCHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHH-HHHHHHC--CCCCCCCCHHHHHHCCHHHHHHHHHHHCCCCCCCEE
T ss_conf             1008888887752468888999267854326599-9999855--888347982454310038999999998699869866


Q ss_pred             EECCHHH-------HHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEE
Q ss_conf             0037245-------568888521-43311168854344687448871158899999840013340021053445682699
Q gi|254780696|r  142 ISRDITQ-------ITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRI  213 (316)
Q Consensus       142 vt~~~~~-------~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv  213 (316)
                      +....+.       +..+.++.+ |+|+||..|.+|.||.++. +..++...++...+ +...+++|+|++.   .++-+
T Consensus       149 ~~~~~~~~~~~~~~l~~~~~~~~~PvvvKP~~~g~S~Gv~~v~-~~~el~~~i~~~~~-~~~~~lvEe~i~g---~E~~~  223 (364)
T 2i87_A          149 SFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSVGISKCN-NEAELKEGIKEAFQ-FDRKLVIEQGVNA---REIEV  223 (364)
T ss_dssp             EEEHHHHHHHHHHHHHHHHHHCCSSEEEEESSCSSCTTCEEES-SHHHHHHHHHHHHT-TCSEEEEEECCCC---EEEEE
T ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEC-CHHHHHHHHHHHHH-CCHHHHHHCCCCC---EEEEE
T ss_conf             7613422200588999999762898699846777787616844-78999999999975-0845444304276---79999


Q ss_pred             EEE--CCEEE-EEEEEECCCCCCCCCCC--CCCC--EEEEECC----HHHHHHHHHHHHHHHHCCC-EEEEEEEE----C
Q ss_conf             998--99886-32122045686000000--1473--1110077----8999999999999998498-79999511----7
Q gi|254780696|r  214 LLL--NGKPV-GAVNRIPSEVDNRSNIH--AGGK--AELTKLT----KIDLDICKRIGESLRERGL-FFTGIDVI----G  277 (316)
Q Consensus       214 ~vi--~g~~v-~a~~R~~~~~~~r~Nl~--~Gg~--~~~~~lt----~~~~~i~~~~~~~L~~~gl-~~~GiDii----g  277 (316)
                      .++  ++... .....++..+.+...-.  .+..  ..+..++    ++.+++|.++.+.|   |+ .+++||++    |
T Consensus       224 ~v~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~~~l---g~~g~~rvDf~~d~~g  300 (364)
T 2i87_A          224 AVLGNDYPEATWPGEVVKDVAFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKAT---DCSGLVRADFFVTEDN  300 (364)
T ss_dssp             EEEESSSCEECCCEEECCSCCC-----------CCEESSCSSCHHHHHHHHHHHHHHHHHT---TCCEEEEEEEEECTTC
T ss_pred             EEEECCCCCEEECEEEEECCCCCCHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHH---CCCEEEEEEEEEECCC
T ss_conf             8511356630001048721555554332034651350588889899999999999999980---9920899999995899


Q ss_pred             -CEEEEEECCCCH-----HHHHHHHHCCCCHHHHHH
Q ss_conf             -878898368830-----378899751999899999
Q gi|254780696|r  278 -DYITEINVTSPT-----CIREIHRNGGENVASLFW  307 (316)
Q Consensus       278 -~~i~EvNvtsP~-----g~~~~~~~~~~~i~~~i~  307 (316)
                       .|++||| |.||     .+...-+..|++..+.+-
T Consensus       301 ~~yvlEvN-~~Pglt~~S~~~~~~~~~G~s~~~li~  335 (364)
T 2i87_A          301 QIYINETN-AMPGFTAFSMYPKLWENMGLSYPELIT  335 (364)
T ss_dssp             CEEEEEEE-SSCCCSTTSHHHHHHHHTTCCHHHHHH
T ss_pred             CEEEEEEE-CCCCCCCCCHHHHHHHHCCCCHHHHHH
T ss_conf             79999861-989988555899999982999999999