HHsearch results for GI: 254780696 and protein with PDBid: 2pvp_A

>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori SS1}
Probab=99.71  E-value=3.8e-16  Score=124.79  Aligned_cols=271  Identities=11%  Similarity=0.072  Sum_probs=157.3

Q ss_pred             CEEEEEECCHHHCCCCCCC----HHHHHHHHHHCCCEEEEEEHHHEEEECCEEEEE-----------EEEEEEECCCCCE
Q ss_conf             3189970998884847646----799999999889889999541248999899999-----------9999980777412
Q gi|254780696|r    5 RNIAIQMNHISTVKVKEDS----TFAIALEAQVRGYQIFHYTPDQLYMRDSKIYAN-----------TQPLSLDEKKEQY   69 (316)
Q Consensus         5 ~kI~fimDpi~~i~~~~DT----T~~Lm~eAq~RGheV~~~~~~dL~~~~g~v~A~-----------~~~i~i~~~~~~~   69 (316)
                      ||||+++=   .-....|-    -.++..+..+||+.+-+++.+..++........           ...+....+.   
T Consensus        21 mkiaVl~G---G~S~Eh~vSl~Sa~~i~~aL~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---   94 (367)
T 2pvp_A           21 MEFCVLFG---GASFEHEISIVSAIALKGVLKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEKKLPPLILTHNG---   94 (367)
T ss_dssp             CCEEEEEE---CSSTTHHHHHHHHHHHHHHHGGGEEEEEEECTTCCEEECCGGGCSHHHHHTGGGSCCCCBEEETTE---
T ss_pred             CEEEEEEC---CCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCHHHCCCCCCCCCCHHHHHHHHHCCCC---
T ss_conf             88999908---585301879999999999874259789999389988983713214432344662320012210365---


Q ss_pred             EEECCCCCCCHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCC-EEECCHHHHHHCCCHHHHHHHHH----HCCCCEEEC
Q ss_conf             6504644352100636688328862247999999998623585-04117488752565034334543----044310003
Q gi|254780696|r   70 YSLGEEKIIDLSQMDVILIRQDPPFNMHYITSTYLLEKINPET-LIVNNPFWIRNSPEKIFVTEFSE----LMPPTLISR  144 (316)
Q Consensus        70 f~~~~~~~~~L~~fD~i~iR~dPp~d~~yi~~~~~Le~~~~~~-~viN~p~~i~~~~eKl~~~~~~~----~~P~T~vt~  144 (316)
                      +...........++|++|.-...++..++. .-.+||.+  +. ++-.++.+...|.||..+-++..    ++|++.+.+
T Consensus        95 ~~~~~~~~~~~~~~d~vf~~~HG~~GEdG~-iq~~Le~~--gipy~Gs~~~as~i~~DK~~~k~~l~~~gI~tp~~~~~~  171 (367)
T 2pvp_A           95 LLKNSFLGAKIIELPLVINLVHGGDGEDGK-LASLLEFY--RIAFIGPRIEASVLSYNKYLTKLYAKDLGIKTLDYVLLN  171 (367)
T ss_dssp             EEEEETTEEEEEECCSEEECCCSTTTTSSH-HHHHHHHT--TCCEESCCHHHHHHHHSHHHHHHHHHHHTCBCCCCEEEC
T ss_pred             CCCCCCCCCCEECCCEEEECCCCCCCCCHH-HHHHHHHC--CCCEECCCHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCC
T ss_conf             210012466211268999967898764579-99999986--996778789999975595998888987299956311344


Q ss_pred             CHHHHHHH-HHHH-HHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEEC--CEE
Q ss_conf             72455688-8852-1433111688543446874488711588999998400133400210534456826999989--988
Q gi|254780696|r  145 DITQITRF-YLEM-KDIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLN--GKP  220 (316)
Q Consensus       145 ~~~~~~~f-~~~~-~~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~Rv~vi~--g~~  220 (316)
                      +.+....+ ..+. .|+|+||..|.+|.||.++. +..++...++..... ...+++||||+...  ++.|.+++  +..
T Consensus       172 ~~~~~~~~~~~~~~~P~vvKP~~~gsS~GV~~v~-~~~el~~ai~~~~~~-~~~vlVEe~I~G~~--E~~v~v~~~~~~~  247 (367)
T 2pvp_A          172 EKNRANALDLMNFNFPFIVKPSNAGSSLGVNVVK-EEKELIYALDSAFEY-SKEVLIEPFIQGVK--EYNLAGCKIKKDF  247 (367)
T ss_dssp             TTTGGGHHHHCCSCSCEEEEESSCCTTTTCEEES-STTSHHHHHHHHTTT-CSCEEEEECCTTCE--EEEEEEEEETTEE
T ss_pred             CHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEE-CCHHHHHHHHHHHHH-CCCEEEEEECCCCE--EEEEEEECCCCCE
T ss_conf             4447889998765998899956645789878996-133179999998761-44135788627978--7478774268952


Q ss_pred             EEEEEEECCCCC---CCCCCCCCCCE--EEEECCHHH----HHHHHHHHHHHHHCCC-EEEEEEEE----CCEEEEEECC
Q ss_conf             632122045686---00000014731--110077899----9999999999998498-79999511----7878898368
Q gi|254780696|r  221 VGAVNRIPSEVD---NRSNIHAGGKA--ELTKLTKID----LDICKRIGESLRERGL-FFTGIDVI----GDYITEINVT  286 (316)
Q Consensus       221 v~a~~R~~~~~~---~r~Nl~~Gg~~--~~~~lt~~~----~~i~~~~~~~L~~~gl-~~~GiDii----g~~i~EvNvt  286 (316)
                      ...+.+.+..++   +.+....++..  .+..++++.    +++|.++.+.|   |+ -+++||++    +.|++||| |
T Consensus       248 ~~~~i~~~~~~~~~dy~~k~~~~~~~~~~pa~l~~~~~~~i~~~a~k~~~~l---g~~G~~rvDf~~~~~~~yviEIN-t  323 (367)
T 2pvp_A          248 CFSYIEEPNKQEFLDFKQKYLDFSRNKAPKASLSNALEEQLKENFKKLYSDL---FDGAIIRCDFFVIENEVYLNEIN-P  323 (367)
T ss_dssp             EEEEEEETTTTEEECCCCSSCCSCCCSCCCCCCCHHHHHHHHHHHHHHHTTT---STTCCEEEEEEEETTEEEEEEEE-S
T ss_pred             EEEEEEECCCCCEEEECCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHH---CCCCEEEEEEEEECCEEEEEEEC-C
T ss_conf             6578997145440353032244640424777799999999999999999996---99376999999999999999861-9


Q ss_pred             CCHHHHH
Q ss_conf             8303788
Q gi|254780696|r  287 SPTCIRE  293 (316)
Q Consensus       287 sP~g~~~  293 (316)
                      .| |+..
T Consensus       324 ~P-G~t~  329 (367)
T 2pvp_A          324 IP-GSLA  329 (367)
T ss_dssp             SC-GGGG
T ss_pred             CC-CCCC
T ss_conf             89-9973