HHsearch results for GI: 254780696 and protein with PDBid: 3lwb_A
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase, RV2981C, structural genomics, TB structural genomics consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=99.73 E-value=1.3e-15 Score=121.40 Aligned_cols=295 Identities=16% Similarity=0.124 Sum_probs=170.9
Q ss_pred CCCEEEEEECCHHH-CCCCCCCHHHHHHHHHHCCCEEEEEEH--HHEEE-ECCEEEE--------------EEEEEEEEC
Q ss_conf 53318997099888-484764679999999988988999954--12489-9989999--------------999999807
Q gi|254780696|r 3 KIRNIAIQMNHIST-VKVKEDSTFAIALEAQVRGYQIFHYTP--DQLYM-RDSKIYA--------------NTQPLSLDE 64 (316)
Q Consensus 3 k~~kI~fimDpi~~-i~~~~DTT~~Lm~eAq~RGheV~~~~~--~dL~~-~~g~v~A--------------~~~~i~i~~ 64 (316)
|.|||++++==.+. -+++--|....+.+..++||+++.+.. +.-++ .+..... ....+.+..
T Consensus 9 ~K~kI~vl~GG~S~E~eVSl~S~~~v~~~L~~~~y~v~~i~i~~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
T 3lwb_A 9 RRVRVAVVFGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTITNRELPQVKSGSGTELALPA 88 (373)
T ss_dssp TCEEEEEEEEC-----CHHHHHHHHHHHHSCTTTEEEEEEEECTTCCEEEECCC--------------------------
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEECCCCHHHHHCCCCHHHHHHCCCCCEEECCC
T ss_conf 98779999686774069999999999997555088699999848997896477455541464101234226773331145
Q ss_pred C---CCCEEEECCCCCCCHHHCCEEEEEC-CCCCCHHHHHHHHHHHHHCCCC-EEECCHHHHHHCCCHHHHHHHHH----
Q ss_conf 7---7412650464435210063668832-8862247999999998623585-04117488752565034334543----
Q gi|254780696|r 65 K---KEQYYSLGEEKIIDLSQMDVILIRQ-DPPFNMHYITSTYLLEKINPET-LIVNNPFWIRNSPEKIFVTEFSE---- 135 (316)
Q Consensus 65 ~---~~~~f~~~~~~~~~L~~fD~i~iR~-dPp~d~~yi~~~~~Le~~~~~~-~viN~p~~i~~~~eKl~~~~~~~---- 135 (316)
. ...+..........+.++|++|+=. .++-....+-. +||.+ +. ++-.++.+...|-||..+-++..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~D~vf~~lHG~~GEdG~iQ~--lle~~--~ipytGs~~~asai~~dK~~tk~il~~~gI 164 (373)
T 3lwb_A 89 DPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQG--LLELA--GVPYVGAGVLASAVGMDKEFTKKLLAADGL 164 (373)
T ss_dssp --------CCCCTTHHHHHHTCSEEEECCEETTEECCHHHH--HHHHH--TCCBSSSCHHHHHHHHBHHHHHHHHHHTTC
T ss_pred CCCCCCCEEECCCCHHHHCCCCCEEEECCCCCCCCHHHHHH--HHHHC--CCCEECCCHHHHHHHHCCHHHHHHHHHCCC
T ss_conf 65446604531542022204678899877687743469999--99986--999848299999977383989999997286
Q ss_pred HCCCCEEECCHHH--HHHHHHHHH-HHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCEE
Q ss_conf 0443100037245--568888521-4331116885434468744887115889999984001334002105344568269
Q gi|254780696|r 136 LMPPTLISRDITQ--ITRFYLEMK-DIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKR 212 (316)
Q Consensus 136 ~~P~T~vt~~~~~--~~~f~~~~~-~vViKPl~g~~G~gV~~i~~~~~~~~~~~e~~~~~~~~~ii~Qefi~~~~~gD~R 212 (316)
++|++.+.++... .....++.+ |+|+||..|.++.||.++... ..+...++.... +...+++|+||+ +.++-
T Consensus 165 ptp~~~~~~~~~~~~~~~~~~~l~~P~vVKP~~~GsS~GV~~v~~~-~el~~~~~~~~~-~~~~vlvE~~I~---g~E~~ 239 (373)
T 3lwb_A 165 PVGAYAVLRPPRSTLHRQECERLGLPVFVKPARGGSSIGVSRVSSW-DQLPAAVARARR-HDPKVIVEAAIS---GRELE 239 (373)
T ss_dssp CBCCEEEECTTCCCCCHHHHHHHCSCEEEEESBCSTTTTCEEECSG-GGHHHHHHHHHT-TCSSEEEEECCE---EEEEE
T ss_pred CCCCCHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEECCCH-HHHHHHHHHHHC-CCCCCCCEEEEC---CCEEE
T ss_conf 7553010010135799999886199889997888641797630668-888888886430-375324225761---50799
Q ss_pred EEEEC---CEEEE----EEEEEC------CCCCCCCCCCCCCCE--EEEECCHH----HHHHHHHHHHHHHHCCC-EEEE
Q ss_conf 99989---98863----212204------568600000014731--11007789----99999999999998498-7999
Q gi|254780696|r 213 ILLLN---GKPVG----AVNRIP------SEVDNRSNIHAGGKA--ELTKLTKI----DLDICKRIGESLRERGL-FFTG 272 (316)
Q Consensus 213 v~vi~---g~~v~----a~~R~~------~~~~~r~Nl~~Gg~~--~~~~lt~~----~~~i~~~~~~~L~~~gl-~~~G 272 (316)
|-+++ |.+.. .+...+ .--|+.+....++.. .+..++++ .+++|.++.+.| |+ .+++
T Consensus 240 v~vi~~~~g~~~~~~~~ei~~~~~~~~~~~~~dy~~ky~~~~~~~~~pa~~~~~~~~~i~~~A~~a~~aL---g~~g~~R 316 (373)
T 3lwb_A 240 CGVLEMPDGTLEASTLGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAI---DCRGLAR 316 (373)
T ss_dssp EEEEECTTSCEEECCCEEEECCSTTCSEESSSCHHHHHTCTTCEEESSCCCCHHHHHHHHHHHHHHHHHT---TCCSEEE
T ss_pred EEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH---CCCEEEE
T ss_conf 9999615786210101027713312554332443330035775346787678899999999999999996---9940898
Q ss_pred EEEE----CCEEEEEECCCCH-----HHHHHHHHCCCCHHHHHHHHH
Q ss_conf 9511----7878898368830-----378899751999899999999
Q gi|254780696|r 273 IDVI----GDYITEINVTSPT-----CIREIHRNGGENVASLFWDGI 310 (316)
Q Consensus 273 iDii----g~~i~EvNvtsP~-----g~~~~~~~~~~~i~~~i~d~i 310 (316)
||++ |.|++||| |.|| .+..+-++.|++..+.+-.-|
T Consensus 317 vDf~~~~~~~yvlEvN-t~PGlt~~S~~p~~a~~~G~s~~~li~~ii 362 (373)
T 3lwb_A 317 VDFFLTDDGPVINEIN-TMPGFTTISMYPRMWAASGVDYPTLLATMI 362 (373)
T ss_dssp EEEEEETTEEEEEEEE-SSCCCSTTSHHHHHHHHTTCCHHHHHHHHH
T ss_pred EEEEEECCEEEEEEEC-CCCCCCCCCHHHHHHHHHCCCHHHHHHHHH
T ss_conf 9999999907999871-999988567899999980999999999999