RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780696|ref|YP_003065109.1| glutathione synthetase
[Candidatus Liberibacter asiaticus str. psy62]
(316 letters)
>1gsa_A Glutathione synthetase; ligase; HET: ADP GTT; 2.00A {Escherichia
coli B} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A
1glv_A
Length = 316
Score = 277 bits (710), Expect = 2e-75
Identities = 127/309 (41%), Positives = 200/309 (64%), Gaps = 2/309 (0%)
Query: 6 NIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEK 65
+ I M+ I+ + +K+DS+FA+ LEAQ RGY++ + LY+ + + A+T+ L++ +
Sbjct: 3 KLGIVMDPIANINIKKDSSFAMLLEAQRRGYELHYMEMGDLYLINGEARAHTRTLNVKQN 62
Query: 66 KEQYYSLGEEKIIDLSQMDVILIRQDPPFNMHYITSTYLLEKINPETLIV-NNPFWIRNS 124
E+++S E+ + L+ +DVIL+R+DPPF+ +I +TY+LE+ + ++ N P +R+
Sbjct: 63 YEEWFSFVGEQDLPLADLDVILMRKDPPFDTEFIYATYILERAEEKGTLIVNKPQSLRDC 122
Query: 125 PEKIFVTEFSELMPPTLISRDITQITRFYLEMKDIIIKPLYGNGGTGVFRITLGDRNFSS 184
EK+F FS+L P TL++R+ Q+ F+ + DII+KPL G GG +FR+ GD N
Sbjct: 123 NEKLFTAWFSDLTPETLVTRNKAQLKAFWEKHSDIILKPLDGMGGASIFRVKEGDPNLGV 182
Query: 185 LIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGKPVG-AVNRIPSEVDNRSNIHAGGKA 243
+ E L E M Q+YLP I+DGDKR+L+++G+PV + RIP + R N+ AGG+
Sbjct: 183 IAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVPYCLARIPQGGETRGNLAAGGRG 242
Query: 244 ELTKLTKIDLDICKRIGESLRERGLFFTGIDVIGDYITEINVTSPTCIREIHRNGGENVA 303
E LT+ D I ++IG +L+E+GL F G+D+IGD +TEINVTSPTCIREI ++
Sbjct: 243 EPRPLTESDWKIARQIGPTLKEKGLIFVGLDIIGDRLTEINVTSPTCIREIEAEFPVSIT 302
Query: 304 SLFWDGIEK 312
+ D IE
Sbjct: 303 GMLMDAIEA 311
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane
protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP:
c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 82.4 bits (203), Expect = 1e-16
Identities = 32/244 (13%), Positives = 72/244 (29%), Gaps = 27/244 (11%)
Query: 67 EQYYSLGEEKIIDLSQMDVILIRQDPPFNMHYITSTYL---LEKINPETLIVNNPFWIRN 123
+ K++ + D +LIRQ L L+ VN+ + N
Sbjct: 165 DMEVLRNGVKVVRSLKPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIP--SVNSLHSVYN 222
Query: 124 SPEKIFVT-----EFSELMPPTLISRDITQITR----FYLEMKDIIIKPLYGNGGTGVFR 174
+K +V +L D T +++K + + G G +
Sbjct: 223 FCDKPWVFAQMVRLHKKLGTEEFPLIDQTFYPNHKEMLSSTTYPVVVKMGHAHSGMGKVK 282
Query: 175 ITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGKPVGAVNRIPSEVDNR 234
+ +F + ++ + ++ D R+ + + S + +
Sbjct: 283 VD-NQHDFQDIASVVA-LTKTYATAEPFIDAKY--DVRVQKIGQNYKAYMRTSVS-GNWK 337
Query: 235 SNIHAGGKAELTKLTKIDLDICKRIGESLRERGLFFTGIDVIGD-----YITEINVTSPT 289
+N E ++ E GL ++ + +I E+ +S
Sbjct: 338 TNTG-SAMLEQIAMSDRYKLWVDTCSEIF--GGLDICAVEALHGKDGRDHIIEVVGSSMP 394
Query: 290 CIRE 293
I +
Sbjct: 395 LIGD 398
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia,
vesicle transport, structural genomics, structural
genomics consortium, SGC; HET: ANP; 1.90A {Homo sapiens}
Length = 344
Score = 64.0 bits (155), Expect = 4e-11
Identities = 34/307 (11%), Positives = 84/307 (27%), Gaps = 33/307 (10%)
Query: 11 MNHISTVKVKEDSTFAIALEAQVRGY-QIFHYTPDQLYMRDSKIYAN-----TQPLSLDE 64
+ + + + ++ + + FH + ++ +
Sbjct: 6 EPPGPSTPIVQRPRILLVIDDAHTDWSKYFHGKKV-NGEIEIRVEQAEFSELNLAAYVTG 64
Query: 65 KK---EQYYSLGEEKIIDLSQMDVILIRQDPPFNMHYITSTYLLEKINPETL-IVNNPFW 120
Q G + + + D IL+RQ L+ + L VN+ +
Sbjct: 65 GCMVDMQVVRNGTKVVSRSFKPDFILVRQHAYSMALGEDYRSLVIGLQYGGLPAVNSLYS 124
Query: 121 IRNSPEKIFVTEFSEL----MPPTLISRDITQITRFYLE-----MKDIIIKPLYGNGGTG 171
+ N K +V + P + +++K + + G G
Sbjct: 125 VYNFCSKPWVFSQLIKIFHSLGPEKFPLVEQTFFPNHKPMVTAPHFPVVVKLGHAHAGMG 184
Query: 172 VFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGKPVGAVNRIPSEV 231
++ ++ I + ++++ D RI + A R
Sbjct: 185 KIKVE--NQLDFQDITSVVAMAKTYATTEAFIDSKYDI--RIQKIGSN-YKAYMRTSISG 239
Query: 232 DNRSNIHAGGKAELTKLTKIDLDICKRIGESLRERGLFFTGIDVIGD-----YITEINVT 286
+ ++N + ++ + E + + YI E+ +
Sbjct: 240 NWKANTGSAMLEQVAMTERYR-LWVDSCSEMFGGLD--ICAVKAVHSKDGRDYIIEVMDS 296
Query: 287 SPTCIRE 293
S I E
Sbjct: 297 SMPLIGE 303
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II,
nysgrc., structural genomics, protein structure
initiative; 1.87A {Archaeoglobus fulgidus}
Length = 305
Score = 46.0 bits (108), Expect = 1e-05
Identities = 32/204 (15%), Positives = 60/204 (29%), Gaps = 19/204 (9%)
Query: 113 LIVNNPFWIRNSPEKIFVTEFSELMPPTLISRDITQITRFYLEMKDIIIKPLYGNGGTGV 172
+ +S I VT + L T IIKP G G+
Sbjct: 90 KAEKYCENLGSSSRAIAVTSDKWELYKKLRGEVQVPQTSLRPLDCKFIIKPRTACAGEGI 149
Query: 173 FRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGKPVGAVNRIPSEVD 232
++ P+ + Q ++ I + + K + +I +
Sbjct: 150 GFS---------------DEVPDGHIAQEFIEGINLSVSLAVGEDVKCLSVNEQIINNFR 194
Query: 233 NRSNIHAGGKAELTKLTKIDLDICKRIGESLRERGLFFTGIDVIGDY--ITEINVTSPTC 290
+ ++ ++ + ++ R E + + V D + EIN T
Sbjct: 195 YAGAVVPARISD--EVKREVVEEAVRAVECVEGLNGYVGVDIVYSDQPYVIEINARLTTP 252
Query: 291 IREIHRNGGENVASLFWDGIEKIK 314
+ R G +VA L G K
Sbjct: 253 VVAFSRAYGASVADLLAGGEVKHV 276
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.00A {Thermus thermophilus} SCOP:
c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Length = 280
Score = 44.9 bits (105), Expect = 2e-05
Identities = 41/274 (14%), Positives = 79/274 (28%), Gaps = 45/274 (16%)
Query: 26 AIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQMDV 85
+ A+ G +Y P+ L E+ +L + V
Sbjct: 15 MLFERAEALGLPYKK------------VYVPALPMVLGER-----------PKELEGVTV 51
Query: 86 ILIRQDPPFNMHYITSTYLLEKINPETLIVNNPFWIRNSPEKIFVTEFSE-----LMPPT 140
L R I +VN P I +K +
Sbjct: 52 ALERCVSQSRGLAAARYLTALGI----PVVNRPEVIEACGDKWATSVALAKAGLPQPKTA 107
Query: 141 LISRDITQITRFYLEMKDIIIKPLYGNGGTG--VFRITLGDRNFSSLIEMLFEKYPEPLM 198
L + + +++KP+ G+ G +L +
Sbjct: 108 LATDREEALRLMEAFGYPVVLKPVIGSWGRLXXXXXXXXXXXXXXXXXXVLGGFQHQLFY 167
Query: 199 IQSYLPQIRDGDKRILLLNGKPVGAVNRIPSEVDNRSNIHAGGKAELTKLTKIDLDICKR 258
IQ Y+ + D R+ ++ + + A +N GG+AE LT+ + +
Sbjct: 168 IQEYVEK-PGRDIRVFVVGERAIAA--IYRRSAHWITNTARGGQAENCPLTEEVARLSVK 224
Query: 259 IGESLRERGLFFTGIDVI----GDYITEINVTSP 288
E++ G +D+ G + E+N +
Sbjct: 225 AAEAV---GGGVVAVDLFESERGLLVNEVN-HTM 254
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 44.9 bits (106), Expect = 2e-05
Identities = 40/239 (16%), Positives = 69/239 (28%), Gaps = 92/239 (38%)
Query: 1 MKKIRNI---AIQMNHISTVK--VKEDSTFAIALEAQVRGYQIFHYT--PDQLY-----M 48
M I N+ +Q ++++ + I+L V G + + P LY +
Sbjct: 338 MLSISNLTQEQVQ-DYVNKTNSHLPAGKQVEISL---VNGAKNLVVSGPPQSLYGLNLTL 393
Query: 49 RDSKIYANTQPLSLDEKKEQYYSLGEEKIIDLSQMD-VILIRQDP---PFNMHYITSTY- 103
R +K P LD+ + I S+ R P PF+ H +
Sbjct: 394 RKAKA-----PSGLDQSR-----------IPFSERKLKFSNRFLPVASPFHSHLLVPASD 437
Query: 104 -LLEKINPETLIVNNPFWIRNSPEKIFV--T-------EFSELMPPTLISRDITQITRFY 153
+ + + + +I V T S ++ R + I R
Sbjct: 438 LINKDLVKNNVS------FNAKDIQIPVYDTFDGSDLRVLSG----SISERIVDCIIR-- 485
Query: 154 LEMKD-----------IIIKPLYGNG--------------GTGVFRITLG---DRNFSS 184
I+ +G G GTGV R+ + D N
Sbjct: 486 -LPVKWETTTQFKATHIL---DFGPGGASGLGVLTHRNKDGTGV-RVIVAGTLDINPDD 539
Score = 38.0 bits (88), Expect = 0.003
Identities = 58/352 (16%), Positives = 99/352 (28%), Gaps = 141/352 (40%)
Query: 55 ANTQPLSLDEKK-EQYYSLGEEKIIDLSQMDVILIRQDPPFNMHYITSTYLLEKINPETL 113
+T+PL+L E + SQ+ ++ FN T E
Sbjct: 4 YSTRPLTLSHGSLEHVLLVPTASFFIASQL-----QEQ--FNKILPEPT--------EGF 48
Query: 114 IVNNPFWIRNSPEKI------FVTEFSELMPPTLISRDITQI--TRF---YLEMKDI--I 160
++ +P ++ +V+ E + + T F YLE DI +
Sbjct: 49 AADDEP---TTPAELVGKFLGYVSSLVEPSKVGQ-FDQVLNLCLTEFENCYLEGNDIHAL 104
Query: 161 IKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGKP 220
L T + + +N+ + M + + S L
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKK--SNS------------ALFR--- 147
Query: 221 VGAVNRIPSEVDNRSNIHA--GGK-------AELTKL--TKIDL--DICKRIGESLRERG 267
AV + + + A GG+ EL L T L D+ K E+L E
Sbjct: 148 --AVG------EGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSE-- 197
Query: 268 L---------FFT-GIDVIG-----------DYITEINVTSP------------TC---- 290
L FT G++++ DY+ I ++ P T
Sbjct: 198 LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG 257
Query: 291 -----IREI------HRNG----------------GENVAS----LFWDGIE 311
+R H G +V LF+ G+
Sbjct: 258 FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR 309
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase,
hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP:
c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A*
2iob_A
Length = 619
Score = 37.9 bits (88), Expect = 0.003
Identities = 19/134 (14%), Positives = 40/134 (29%), Gaps = 19/134 (14%)
Query: 103 YLLEKINPETLIVNNPFWIRNSPEKIF------VTEFSELMPPTLISRDITQITRFYLEM 156
L++ + ++V P W K + + T + + L
Sbjct: 474 RLIDVLLRPEVLVFEPLWTVIPGNKAILPILWSLFPHHRYLLDTDFTVND------ELVK 527
Query: 157 KDIIIKPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILL- 215
+KP+ G G+ + L + L + + + + Q + K I +
Sbjct: 528 TGYAVKPIAGRCGSNI---DLVSHHEEVLDKTSGKFAEQKNIYQQLWCLPKVDGKYIQVC 584
Query: 216 ---LNGKPVGAVNR 226
+ G G R
Sbjct: 585 TFTVGGNYGGTCLR 598
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.7 bits (73), Expect = 0.12
Identities = 8/34 (23%), Positives = 20/34 (58%), Gaps = 10/34 (29%)
Query: 1 MKKIRNIAIQMNHISTVKV-KEDSTFAIALEAQV 33
+KK++ +++K+ +DS A+A++A +
Sbjct: 22 LKKLQ---------ASLKLYADDSAPALAIKATM 46
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB:
2vps_A 2vpm_A
Length = 652
Score = 32.2 bits (73), Expect = 0.17
Identities = 16/125 (12%), Positives = 34/125 (27%), Gaps = 11/125 (8%)
Query: 104 LLEKINPETLIVNNPFWIRNSPEKIFVTEFSELMP--PTLISRDITQITRFYLEMKDIII 161
L + ++ P W K + P P ++ + L
Sbjct: 490 DLLLGDDWEILYFEPMWKVIPSNKAILPMIYHNHPEHPAILKAEYELTD--ELRKHGYAK 547
Query: 162 KPLYGNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILL----LN 217
KP+ G G+ V + + E + ++ Q + D ++ +
Sbjct: 548 KPIVGRVGSNV---IITSGDGVVHAESGGKYGKRNMIYQQLFELKKQDDYYAIIGGWMIG 604
Query: 218 GKPVG 222
G
Sbjct: 605 DAFSG 609
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase,
ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba
histolytica hm-1} PDB: 1z2o_X* 1z2p_X*
Length = 324
Score = 30.5 bits (68), Expect = 0.54
Identities = 30/258 (11%), Positives = 74/258 (28%), Gaps = 51/258 (19%)
Query: 75 EKIIDLSQMDVILIRQDPPFNMHYITSTYLLEKINPETLIVNNPFWI-----RNSPEKIF 129
++ D +I R P M Y K +P+ L + + R +
Sbjct: 49 TELPDKEPNAIITKRTHPVGKMADEMRKYE--KDHPKVLFLESSAIHDMMSSREEINALL 106
Query: 130 VTEFSELMPPTLISRDITQITRFYLEMK---DIIIKPLYGNGGTGVFRITLGD------- 179
+ + +P + + ++ + + I+KP G ++ +
Sbjct: 107 -IKNNIPIPNSFSVKSKEEVIQLLQSKQLILPFIVKPENAQGTFNAHQMKIVLEQEGIDD 165
Query: 180 -------RNFSSLIEMLFEKY---------PEPLMIQSYLPQIRDGDKRILLLNGKPVGA 223
+++ + + + + + + I+ D L
Sbjct: 166 IHFPCLCQHYINHNNKIVKVFCIGNTLKWQTRTSLPNVHRCGIKSVDFNNQHLEDILSWP 225
Query: 224 VNRIPSEVDNRSNIHAGGKAELT-------KLTKIDLDICKRIGESLRERGLFFTGIDVI 276
I + ++ + G L D+ ++ +L G+ GID I
Sbjct: 226 EGVIDKQDIIENSANRFGSKILEDPILLNLTSEAEMRDLAYKVRCAL---GVQLCGIDFI 282
Query: 277 GD------YITEINVTSP 288
+ + ++N P
Sbjct: 283 KENEQGNPLVVDVN-VFP 299
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type
2 promoters, transcription, hypothetical protein,
preinitiation complex, yeast RNA polymerase III; 3.2A
{Saccharomyces cerevisiae}
Length = 588
Score = 30.2 bits (68), Expect = 0.66
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 76 KIIDLSQMDVILIRQDPPFNMHYITSTYLLEKINPETLIVNNPF 119
KI +S+ VI I++D + + T LLE+ N ++
Sbjct: 543 KICPVSKQRVIDIKRDDLNDYGWFTRG-LLERFNEISVYCGTTL 585
>1yvk_A Hypothetical protein BSU33890; ALPHS-beta protein, structural
genomics, PSI, protein structure initiative; HET: COA;
3.01A {Bacillus subtilis subsp} SCOP: d.108.1.1
Length = 163
Score = 29.2 bits (65), Expect = 1.2
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 9/93 (9%)
Query: 174 RITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGKPVG--AVNRIPSEV 231
RI LG+ L ++L P ++ YL G+ + G + + +
Sbjct: 7 RIELGEETNDELYDLLLLADPSKDIVDEYLE---RGECYTAWAGDELAGVYVLLKTRPQT 63
Query: 232 DNRSNI----HAGGKAELTKLTKIDLDICKRIG 260
NI K +L ++ K++G
Sbjct: 64 VEIVNIAVKESLQKKGFGKQLVLDAIEKAKKLG 96
>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH,
oxygenase, transcription, inhibitor 2-oxoglutarate,
asparaginyl hydroxylase,; HET: AKG; 2.10A {Homo sapiens}
PDB: 2ilm_A* 1h2k_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A*
2cgn_A 2cgo_A* 1mze_A* 1mzf_A* 1iz3_A
Length = 349
Score = 29.1 bits (64), Expect = 1.4
Identities = 20/148 (13%), Positives = 45/148 (30%), Gaps = 13/148 (8%)
Query: 12 NHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSK----IYANTQPLSLDEKKE 67
+++ E F ++ R + LY + + D ++
Sbjct: 193 GNVTPAHYGEQQNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERF 252
Query: 68 QYYSLGEEKIIDLSQMDVILIRQDPPFNMHYITSTYLLEKINPETLIVNNPFWIRNSPEK 127
+ + DV+ I P + H+I S + + + FW + +P
Sbjct: 253 PNFQNVVGYETVVGPGDVLYI---PMYWWHHIES------LLNGGITITVNFWYKGAPTP 303
Query: 128 IFVTEFSELMPPTLISRDITQITRFYLE 155
+ + I R+I ++ L
Sbjct: 304 KRIEYPLKAHQKVAIMRNIEKMLGEALG 331
>1dml_A DNA polymerase processivity factor; herpes simplex virus, DNA
synthesis, sliding clamps, PCNA, processivity, DNA
binding protein/transferase complex; HET: DNA; 2.70A
{Human herpesvirus 1} SCOP: d.131.1.2 d.131.1.2
Length = 319
Score = 28.3 bits (63), Expect = 2.4
Identities = 8/52 (15%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 138 PPTLISRDITQITRFYLEMKDIIIKPLYGNGGTGVFRITLGDRNFSSLIEML 189
++S +T+ + K +YG F + + D + +++ L
Sbjct: 235 QVQILSNALTKAGQAAANAK-----TVYGENTHRTFSVVVDDCSMRAVLRRL 281
>2xi5_A RNA polymerase L, L-protein; transferase, bunyaviridae,
orthobunyavirus, aedes triseriatu hydrolase; 2.20A
{Bunyavirus la crosse} PDB: 2xi7_A*
Length = 184
Score = 27.3 bits (60), Expect = 5.0
Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 6/102 (5%)
Query: 21 EDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPLSLDEK-----KEQYYSLGEE 75
D I E H TPD ++ +Y +S+ + ++YY L +
Sbjct: 57 IDIILDIRPEVDPLTIDAPHITPDNYLYINNVLYIIDYKVSVSNESSVITYDKYYELTRD 116
Query: 76 KIIDLS-QMDVILIRQDPPFNMHYITSTYLLEKINPETLIVN 116
LS +++++IR DP +I S E + +N
Sbjct: 117 ISDRLSIPIEIVIIRIDPVSRDLHINSDRFKELYPTIVVDIN 158
>1g5g_A Fusion protein; NDV, paramyxovirus, viral protein; HET: NAG BMA;
3.30A {Newcastle disease virus} SCOP: f.12.1.1 h.3.2.1
Length = 481
Score = 27.0 bits (59), Expect = 5.2
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 22/91 (24%)
Query: 128 IFVTEFSELMPPTLISRDITQITRFYLEMKDIIIKPLY----GNGGTGVFRITLGDRNFS 183
+++TE + + P + S +TQ+T I+ LY GN + ++ +G+ S
Sbjct: 181 LYLTELTTVFGPQITSPALTQLT----------IQALYNLAGGNMDYLLTKLGVGNNQLS 230
Query: 184 SLIE--------MLFEKYPEPLMIQSYLPQI 206
SLI +L++ + L IQ LP +
Sbjct: 231 SLISSGLITGNPILYDSQTQLLGIQVTLPSV 261
>2hnh_A DNA polymerase III alpha subunit; DNA replication,
nucleotidyltransferase, POL beta, PHP; HET: DNA; 2.30A
{Escherichia coli} PDB: 2hqa_A*
Length = 910
Score = 27.0 bits (59), Expect = 6.3
Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 20/93 (21%)
Query: 151 RFYLEMKDIIIKPLYG--------NGGTGVFRITL------GDRNFSSLIEMLF---EKY 193
+FY IKP+ G G + +T+ G +N + LI +
Sbjct: 52 KFYGAGHGAGIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111
Query: 194 PEPLMIQSYLPQIRDGDKRILLLNGKPVGAVNR 226
P++ + +L ++ +G ++LL+G +G V R
Sbjct: 112 AGPIIDRDWLIELNEG---LILLSGGRMGDVGR 141
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase;
2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A
3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A
Length = 531
Score = 26.5 bits (58), Expect = 8.8
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 116 NNPFWIRNSPEKIFVTEFSELMPPTLIS-RDITQITRFYLEMKDI 159
FWI K FV + + P + D+ + Y++++++
Sbjct: 298 TPSFWILARALKEFVAKEGQGNLPVRGTIPDMIADSGKYIKLQNV 342
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.320 0.140 0.403
Gapped
Lambda K H
0.267 0.0428 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,859,593
Number of extensions: 140839
Number of successful extensions: 414
Number of sequences better than 10.0: 1
Number of HSP's gapped: 408
Number of HSP's successfully gapped: 23
Length of query: 316
Length of database: 5,693,230
Length adjustment: 92
Effective length of query: 224
Effective length of database: 3,462,782
Effective search space: 775663168
Effective search space used: 775663168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.5 bits)