BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780696|ref|YP_003065109.1| glutathione synthetase
[Candidatus Liberibacter asiaticus str. psy62]
         (316 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780696|ref|YP_003065109.1| glutathione synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 316

 Score =  647 bits (1670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/316 (100%), Positives = 316/316 (100%)

Query: 1   MKKIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPL 60
           MKKIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPL
Sbjct: 1   MKKIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPL 60

Query: 61  SLDEKKEQYYSLGEEKIIDLSQMDVILIRQDPPFNMHYITSTYLLEKINPETLIVNNPFW 120
           SLDEKKEQYYSLGEEKIIDLSQMDVILIRQDPPFNMHYITSTYLLEKINPETLIVNNPFW
Sbjct: 61  SLDEKKEQYYSLGEEKIIDLSQMDVILIRQDPPFNMHYITSTYLLEKINPETLIVNNPFW 120

Query: 121 IRNSPEKIFVTEFSELMPPTLISRDITQITRFYLEMKDIIIKPLYGNGGTGVFRITLGDR 180
           IRNSPEKIFVTEFSELMPPTLISRDITQITRFYLEMKDIIIKPLYGNGGTGVFRITLGDR
Sbjct: 121 IRNSPEKIFVTEFSELMPPTLISRDITQITRFYLEMKDIIIKPLYGNGGTGVFRITLGDR 180

Query: 181 NFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGKPVGAVNRIPSEVDNRSNIHAG 240
           NFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGKPVGAVNRIPSEVDNRSNIHAG
Sbjct: 181 NFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGKPVGAVNRIPSEVDNRSNIHAG 240

Query: 241 GKAELTKLTKIDLDICKRIGESLRERGLFFTGIDVIGDYITEINVTSPTCIREIHRNGGE 300
           GKAELTKLTKIDLDICKRIGESLRERGLFFTGIDVIGDYITEINVTSPTCIREIHRNGGE
Sbjct: 241 GKAELTKLTKIDLDICKRIGESLRERGLFFTGIDVIGDYITEINVTSPTCIREIHRNGGE 300

Query: 301 NVASLFWDGIEKIKET 316
           NVASLFWDGIEKIKET
Sbjct: 301 NVASLFWDGIEKIKET 316


>gi|254780806|ref|YP_003065219.1| chromosome partitioning protein A [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 265

 Score = 25.8 bits (55), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 166 GNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQI 206
           GN  TG   I L DR +SS   ++ EK    ++IQ+ +P +
Sbjct: 47  GNASTG-LGIELYDRKYSSYDLLIEEKNINQILIQTAIPNL 86


>gi|254780762|ref|YP_003065175.1| recombination protein RecR [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 201

 Score = 24.6 bits (52), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 6   NIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKI 53
           +I IQ + I  ++VK+      A+ A + G    HY  D+L   D KI
Sbjct: 124 DIGIQ-SLIERIEVKKIRELIFAISATIEGQTTAHYIMDKLKGIDVKI 170


>gi|254780466|ref|YP_003064879.1| putative modification methylase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 375

 Score = 24.3 bits (51), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 4/35 (11%)

Query: 138 PPTLISRDITQITRFYLEMKDIIIKPLYGNGGTGV 172
           P  L+SR +   T+      DII+ P +G+G +G 
Sbjct: 209 PEALLSRILVSSTK----PGDIILDPFFGSGTSGA 239


>gi|254780689|ref|YP_003065102.1| flagellar motor switch protein G [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 345

 Score = 23.9 bits (50), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 14/69 (20%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 5  RNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQL--YMRDSKIYANTQPLSL 62
          +N+  +++ +S  +  + +   +A+E QV G  + H+T  +L   +  +K+     P  L
Sbjct: 11 KNLYKEISPVSLTQKDKATAILLAMEKQVSGKLLRHFTHAELKEIVASAKLLPEISPEEL 70

Query: 63 DEKKEQYYS 71
          ++  +++ S
Sbjct: 71 EDIIDEFES 79


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.140    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 209,852
Number of Sequences: 1233
Number of extensions: 9272
Number of successful extensions: 21
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 7
length of query: 316
length of database: 328,796
effective HSP length: 74
effective length of query: 242
effective length of database: 237,554
effective search space: 57488068
effective search space used: 57488068
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 38 (19.2 bits)