BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780696|ref|YP_003065109.1| glutathione synthetase [Candidatus Liberibacter asiaticus str. psy62] (316 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780696|ref|YP_003065109.1| glutathione synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 316 Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust. Identities = 316/316 (100%), Positives = 316/316 (100%) Query: 1 MKKIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPL 60 MKKIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPL Sbjct: 1 MKKIRNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKIYANTQPL 60 Query: 61 SLDEKKEQYYSLGEEKIIDLSQMDVILIRQDPPFNMHYITSTYLLEKINPETLIVNNPFW 120 SLDEKKEQYYSLGEEKIIDLSQMDVILIRQDPPFNMHYITSTYLLEKINPETLIVNNPFW Sbjct: 61 SLDEKKEQYYSLGEEKIIDLSQMDVILIRQDPPFNMHYITSTYLLEKINPETLIVNNPFW 120 Query: 121 IRNSPEKIFVTEFSELMPPTLISRDITQITRFYLEMKDIIIKPLYGNGGTGVFRITLGDR 180 IRNSPEKIFVTEFSELMPPTLISRDITQITRFYLEMKDIIIKPLYGNGGTGVFRITLGDR Sbjct: 121 IRNSPEKIFVTEFSELMPPTLISRDITQITRFYLEMKDIIIKPLYGNGGTGVFRITLGDR 180 Query: 181 NFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGKPVGAVNRIPSEVDNRSNIHAG 240 NFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGKPVGAVNRIPSEVDNRSNIHAG Sbjct: 181 NFSSLIEMLFEKYPEPLMIQSYLPQIRDGDKRILLLNGKPVGAVNRIPSEVDNRSNIHAG 240 Query: 241 GKAELTKLTKIDLDICKRIGESLRERGLFFTGIDVIGDYITEINVTSPTCIREIHRNGGE 300 GKAELTKLTKIDLDICKRIGESLRERGLFFTGIDVIGDYITEINVTSPTCIREIHRNGGE Sbjct: 241 GKAELTKLTKIDLDICKRIGESLRERGLFFTGIDVIGDYITEINVTSPTCIREIHRNGGE 300 Query: 301 NVASLFWDGIEKIKET 316 NVASLFWDGIEKIKET Sbjct: 301 NVASLFWDGIEKIKET 316 >gi|254780806|ref|YP_003065219.1| chromosome partitioning protein A [Candidatus Liberibacter asiaticus str. psy62] Length = 265 Score = 25.8 bits (55), Expect = 1.1, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%) Query: 166 GNGGTGVFRITLGDRNFSSLIEMLFEKYPEPLMIQSYLPQI 206 GN TG I L DR +SS ++ EK ++IQ+ +P + Sbjct: 47 GNASTG-LGIELYDRKYSSYDLLIEEKNINQILIQTAIPNL 86 >gi|254780762|ref|YP_003065175.1| recombination protein RecR [Candidatus Liberibacter asiaticus str. psy62] Length = 201 Score = 24.6 bits (52), Expect = 2.4, Method: Compositional matrix adjust. Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Query: 6 NIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQLYMRDSKI 53 +I IQ + I ++VK+ A+ A + G HY D+L D KI Sbjct: 124 DIGIQ-SLIERIEVKKIRELIFAISATIEGQTTAHYIMDKLKGIDVKI 170 >gi|254780466|ref|YP_003064879.1| putative modification methylase [Candidatus Liberibacter asiaticus str. psy62] Length = 375 Score = 24.3 bits (51), Expect = 2.7, Method: Compositional matrix adjust. Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 4/35 (11%) Query: 138 PPTLISRDITQITRFYLEMKDIIIKPLYGNGGTGV 172 P L+SR + T+ DII+ P +G+G +G Sbjct: 209 PEALLSRILVSSTK----PGDIILDPFFGSGTSGA 239 >gi|254780689|ref|YP_003065102.1| flagellar motor switch protein G [Candidatus Liberibacter asiaticus str. psy62] Length = 345 Score = 23.9 bits (50), Expect = 3.8, Method: Compositional matrix adjust. Identities = 14/69 (20%), Positives = 36/69 (52%), Gaps = 2/69 (2%) Query: 5 RNIAIQMNHISTVKVKEDSTFAIALEAQVRGYQIFHYTPDQL--YMRDSKIYANTQPLSL 62 +N+ +++ +S + + + +A+E QV G + H+T +L + +K+ P L Sbjct: 11 KNLYKEISPVSLTQKDKATAILLAMEKQVSGKLLRHFTHAELKEIVASAKLLPEISPEEL 70 Query: 63 DEKKEQYYS 71 ++ +++ S Sbjct: 71 EDIIDEFES 79 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.320 0.140 0.403 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 209,852 Number of Sequences: 1233 Number of extensions: 9272 Number of successful extensions: 21 Number of sequences better than 100.0: 7 Number of HSP's better than 100.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 7 length of query: 316 length of database: 328,796 effective HSP length: 74 effective length of query: 242 effective length of database: 237,554 effective search space: 57488068 effective search space used: 57488068 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 38 (19.2 bits)