HHsearch alignment for GI: 254780697 and conserved domain: TIGR00220

>TIGR00220 mscL large conductance mechanosensitive channel protein; InterPro: IPR001185 Mechanosensitive ion channels (MscL) play a critical role in transducing physical stresses at the cell membrane into an electrochemical response. MscL is a protein which forms a channel organised as a homopentamer, with each subunit containing two transmembrane regions . Prokaryotes harbor a large-conductance mechanosensitive channel (gene mscL) that opens in response to stretch forces in the membrane lipid bilayer and may participate in the regulation of osmotic pressure changes within the cell .; GO: 0005216 ion channel activity, 0006810 transport, 0016020 membrane.
Probab=99.88  E-value=3.1e-22  Score=155.95  Aligned_cols=125  Identities=42%  Similarity=0.797  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHCCCCCCHH
Q ss_conf             78999999983666999999999998999999999976666778750465674432576276666311232101660000
Q gi|254780697|r    7 VFNEFKKFIARGNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPLSSEIKSSLISEARKQGAVFA   86 (141)
Q Consensus         7 mlkeFK~Fi~rGNVidLAVavIIG~AF~~iV~slv~diimPlIg~i~g~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~i~   86 (141)
T Consensus         1 ~~~~~~~~~~~g~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g-------~~p~~~~~   72 (139)
T TIGR00220         1 FWKEFKEFALRGNVVDLAVGVVIGGAFGKIVSSLVADLLAPLLGLLLG-GLDFSGLSFTLGDAPG-------DVPAVGLK   72 (139)
T ss_pred             CCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHCCCC-------CCHHHHHH
T ss_conf             911367787605345678877862467889999999999888887631-2341023433300245-------30145666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CC--CCCC----CHHHHHHHHHHHHH
Q ss_conf             989999999999999999999999999841234---88--9868----35699999999964
Q gi|254780697|r   87 YGSFASVLVNFFILAGVVFVLIQFMNKLVKQTE---NV--KNPP----AEVQLLTEIRDLLQ  139 (141)
Q Consensus        87 yG~fl~aiI~FlIiA~viFlivk~~nk~~~~~e---~~--~~~~----~e~~LL~EIRDlLk  139 (141)
T Consensus        73 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  134 (139)
T TIGR00220        73 YGEFIQNVINFLIIAFAIFLVIKLLNKLRRKKKPEEEAAAPAPDPVLEAQENLLTEIRDLLK  134 (139)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             78899999999999999999999987765421111222100221255678899999999998