Query gi|254780697|ref|YP_003065110.1| large conductance mechanosensitive channel protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 141
No_of_seqs 109 out of 1037
Neff 4.9
Searched_HMMs 39220
Date Sun May 29 20:03:37 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780697.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13952 mscL large-conductanc 100.0 0 0 331.3 15.6 136 5-141 1-142 (143)
2 COG1970 MscL Large-conductance 100.0 0 0 314.1 14.0 124 5-141 1-130 (130)
3 PRK00567 mscL large-conductanc 100.0 0 0 311.4 14.5 127 7-141 1-130 (134)
4 pfam01741 MscL Large-conductan 100.0 0 0 311.3 14.4 124 7-141 1-127 (127)
5 PRK13955 mscL large-conductanc 100.0 0 0 307.7 14.8 119 7-140 1-124 (130)
6 PRK13953 mscL large-conductanc 100.0 0 0 303.3 14.8 119 7-140 1-122 (127)
7 PRK13954 mscL large-conductanc 100.0 1.4E-45 0 297.7 13.4 117 7-141 1-119 (120)
8 TIGR00220 mscL large conductan 99.9 3.1E-22 8E-27 156.0 11.4 125 7-139 1-134 (139)
9 PRK13453 F0F1 ATP synthase sub 94.2 0.064 1.6E-06 32.3 3.9 32 84-115 15-47 (173)
10 PRK07352 F0F1 ATP synthase sub 94.0 0.078 2E-06 31.8 4.0 40 76-115 8-48 (174)
11 PRK13461 F0F1 ATP synthase sub 91.2 0.3 7.6E-06 28.2 3.9 31 85-115 3-34 (159)
12 PRK13415 flagella biosynthesis 90.0 0.91 2.3E-05 25.2 5.5 35 82-116 65-99 (216)
13 pfam00606 Glycoprotein_B Herpe 88.2 1.9 4.8E-05 23.3 6.1 39 4-42 618-659 (711)
14 TIGR02865 spore_II_E stage II 88.2 1.3 3.2E-05 24.4 5.1 110 17-140 198-336 (794)
15 pfam09851 DUF2078 Predicted me 88.0 1.8 4.6E-05 23.4 5.8 47 86-133 6-52 (73)
16 PRK08476 F0F1 ATP synthase sub 87.5 0.79 2E-05 25.6 3.8 31 85-115 5-36 (141)
17 PRK13460 F0F1 ATP synthase sub 86.9 1.1 2.8E-05 24.7 4.2 33 83-115 12-45 (173)
18 CHL00019 atpF ATP synthase CF0 86.8 1.7 4.4E-05 23.6 5.2 34 81-114 18-52 (184)
19 PRK06231 F0F1 ATP synthase sub 85.3 2.3 5.9E-05 22.8 5.2 31 86-116 47-78 (201)
20 TIGR03321 alt_F1F0_F0_B altern 83.6 1.7 4.3E-05 23.6 3.9 32 84-115 2-34 (246)
21 pfam00430 ATP-synt_B ATP synth 74.6 3.1 8E-05 22.0 3.0 27 89-115 1-28 (132)
22 CHL00118 atpG ATP synthase CF0 73.7 5.5 0.00014 20.5 4.0 29 88-116 23-52 (156)
23 pfam06637 PV-1 PV-1 protein (P 72.2 5.1 0.00013 20.7 3.6 27 82-108 22-49 (442)
24 CHL00167 consensus 71.5 8.8 0.00022 19.3 4.9 34 80-113 19-53 (182)
25 pfam06783 UPF0239 Uncharacteri 71.5 2 5.1E-05 23.2 1.3 29 81-109 18-46 (85)
26 PRK07353 F0F1 ATP synthase sub 71.3 5.9 0.00015 20.3 3.7 31 85-116 4-35 (140)
27 PRK08475 F0F1 ATP synthase sub 70.5 9.2 0.00024 19.1 5.0 27 87-113 24-51 (170)
28 PRK10297 N,N'-diacetylchitobio 61.2 10 0.00026 18.9 3.3 33 86-118 405-437 (452)
29 pfam12046 DUF3529 Protein of u 60.9 14 0.00036 18.0 4.0 10 130-139 159-168 (173)
30 PRK05759 F0F1 ATP synthase sub 58.3 15 0.00037 17.9 3.7 28 88-115 5-33 (156)
31 pfam06084 Cytomega_TRL10 Cytom 57.7 8.1 0.00021 19.5 2.3 24 82-105 75-100 (170)
32 pfam08496 Peptidase_S49_N Pept 57.4 16 0.00042 17.6 5.9 15 86-100 6-20 (154)
33 PRK00376 lspA lipoprotein sign 54.6 18 0.00046 17.3 4.0 34 20-64 93-126 (162)
34 PRK12996 ulaA ascorbate-specif 52.0 20 0.00051 17.1 7.7 37 25-61 370-406 (463)
35 PRK13428 F0F1 ATP synthase sub 50.5 19 0.00049 17.2 3.3 28 88-115 2-30 (445)
36 PRK09592 celD cellobiose phosp 49.2 22 0.00057 16.8 4.8 15 20-34 88-102 (449)
37 pfam04011 LemA LemA family. Th 47.1 23 0.0006 16.7 3.3 16 100-115 11-26 (186)
38 COG0711 AtpF F0F1-type ATP syn 46.3 25 0.00063 16.5 4.1 31 85-115 4-35 (161)
39 PRK08600 putative monovalent c 45.8 25 0.00064 16.5 5.2 34 84-117 67-101 (113)
40 COG3477 Predicted periplasmic/ 44.4 22 0.00055 16.9 2.7 25 24-49 15-39 (176)
41 PRK11469 hypothetical protein; 38.8 32 0.00082 15.8 5.9 13 43-55 65-77 (206)
42 pfam10104 Brr6_like_C_C Di-sul 37.3 34 0.00087 15.7 3.6 25 89-113 3-27 (135)
43 PRK09575 vmrA multidrug efflux 34.9 37 0.00095 15.5 5.5 40 87-126 415-455 (456)
44 pfam06295 DUF1043 Protein of u 32.5 33 0.00084 15.8 2.1 20 20-39 3-22 (128)
45 TIGR00739 yajC preprotein tran 32.2 22 0.00057 16.8 1.2 30 90-119 2-32 (86)
46 COG0239 CrcB Integral membrane 30.6 44 0.0011 15.0 6.1 53 23-107 4-56 (126)
47 PRK08156 surface presentation 30.2 44 0.0011 15.0 9.8 21 8-28 119-139 (367)
48 TIGR02976 phageshock_pspB phag 27.8 49 0.0012 14.7 4.7 43 96-138 4-51 (75)
49 PRK05585 yajC preprotein trans 27.6 34 0.00087 15.7 1.5 30 89-118 17-47 (107)
50 PRK09449 nucleotidase; Provisi 27.3 13 0.00034 18.1 -0.6 19 123-141 207-225 (225)
51 PRK09548 ascorbate-specific PT 26.5 52 0.0013 14.6 2.7 78 30-117 382-467 (602)
52 KOG2493 consensus 26.0 53 0.0013 14.5 3.7 29 87-115 232-262 (512)
53 TIGR00410 lacE PTS system, lac 25.8 53 0.0014 14.5 4.5 35 86-120 415-449 (450)
54 TIGR00359 cello_pts_IIC PTS sy 25.8 53 0.0014 14.5 4.5 35 86-120 415-449 (450)
55 COG1455 CelB Phosphotransferas 25.6 54 0.0014 14.5 5.1 30 86-115 390-419 (432)
56 pfam07274 DUF1440 Protein of u 25.3 46 0.0012 14.9 1.9 34 81-115 48-82 (136)
57 COG1862 YajC Preprotein transl 24.6 47 0.0012 14.8 1.8 30 88-117 6-36 (97)
58 PRK05702 flhB flagellar biosyn 24.4 56 0.0014 14.3 9.7 45 8-52 131-175 (352)
59 pfam05961 Chordopox_A13L Chord 23.7 58 0.0015 14.2 3.5 32 109-140 21-55 (68)
60 PRK06531 yajC preprotein trans 22.3 47 0.0012 14.8 1.4 25 92-116 4-28 (120)
61 pfam11598 COMP Cartilage oligo 22.2 53 0.0013 14.5 1.7 13 128-140 14-26 (45)
62 KOG2639 consensus 21.8 64 0.0016 14.0 7.3 114 15-134 264-399 (685)
63 COG1971 Predicted membrane pro 21.5 65 0.0016 14.0 8.1 33 23-55 18-59 (190)
64 pfam09819 ABC_cobalt ABC-type 21.4 65 0.0017 14.0 4.0 75 20-99 1-78 (129)
65 PRK09584 tppB putative tripept 21.0 66 0.0017 13.9 8.1 11 85-95 159-169 (500)
66 PRK11462 putative transporter; 20.8 67 0.0017 13.9 9.0 17 123-139 210-226 (460)
67 pfam01312 Bac_export_2 FlhB Hr 20.6 67 0.0017 13.9 9.1 12 93-104 144-155 (343)
No 1
>PRK13952 mscL large-conductance mechanosensitive channel; Provisional
Probab=100.00 E-value=0 Score=331.34 Aligned_cols=136 Identities=46% Similarity=0.896 Sum_probs=117.9
Q ss_pred CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCC-HHHHH-CCCC
Q ss_conf 127899999998366699999999999899999999997666677875046567443257627666631-12321-0166
Q gi|254780697|r 5 TPVFNEFKKFIARGNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPLSSEIKSS-LISEA-RKQG 82 (141)
Q Consensus 5 ~~mlkeFK~Fi~rGNVidLAVavIIG~AF~~iV~slv~diimPlIg~i~g~g~~f~~~~~~l~~~~~~~-~~~~~-~~~~ 82 (141)
|+|+||||+|++||||+|||||||||+||++||+|||+|||||+||+++| |+||+++++.+++..... ..++. ..+.
T Consensus 1 M~mlkeFK~Fi~rGNViDLAVgVIIG~AF~~IV~slV~diimPlIg~l~G-~~dfs~~~~~l~~~~~~~~~~~~~~~~g~ 79 (143)
T PRK13952 1 MSMLKEFKEFAVKGNVMDLAVGVIIGGAFGKIVDSLVNDLIMPIIGLITG-GLDFSNYFIVLGGAPPNPTTLAAAKKAGA 79 (143)
T ss_pred CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHEEECCCCCCCCCHHHHHHHCCC
T ss_conf 95789999999806779999999999999999999999889888987328-88865710234677666301888875365
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 0000989999999999999999999999999841234----8898683569999999996409
Q gi|254780697|r 83 AVFAYGSFASVLVNFFILAGVVFVLIQFMNKLVKQTE----NVKNPPAEVQLLTEIRDLLQKN 141 (141)
Q Consensus 83 ~~i~yG~fl~aiI~FlIiA~viFlivk~~nk~~~~~e----~~~~~~~e~~LL~EIRDlLkkn 141 (141)
+++.||+|++++|||+|+||++|++||+|||++++++ ++++||+|++||+||||+||+.
T Consensus 80 ~~i~yG~fl~avInFlIiA~vvF~vVk~~nkl~~k~~~~~~~~~~~~~e~~LL~EIRDlL~~q 142 (143)
T PRK13952 80 PVFAYGNFITVLINFLILAFIIFLMVKAINRLRRKEEAAPAAPPPPPEDVVLLREIRDLLKKR 142 (143)
T ss_pred CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 102099999999999999999999999999987524468999999980889999999999816
No 2
>COG1970 MscL Large-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=0 Score=314.09 Aligned_cols=124 Identities=50% Similarity=0.900 Sum_probs=112.6
Q ss_pred CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHCCCCCC
Q ss_conf 12789999999836669999999999989999999999766667787504656744325762766663112321016600
Q gi|254780697|r 5 TPVFNEFKKFIARGNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPLSSEIKSSLISEARKQGAV 84 (141)
Q Consensus 5 ~~mlkeFK~Fi~rGNVidLAVavIIG~AF~~iV~slv~diimPlIg~i~g~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~ 84 (141)
++|+||||+|++||||+|||||||||+|||+||+|||+|||||+||.++| |.||+++++.++ .++++
T Consensus 1 m~mlkeFkeF~~RGNVvDLAVgVIIGaAFg~IV~SlV~diImPlIg~~~g-g~dfs~l~~~l~------------~~~~~ 67 (130)
T COG1970 1 MSMLKEFKEFALRGNVVDLAVGVIIGAAFGKIVTSLVNDIIMPLIGLLVG-GLDFSNLFITLG------------IPAVV 67 (130)
T ss_pred CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHEEECC------------CCCEE
T ss_conf 92789999999705716677888858989889999999888763664137-757335201217------------87545
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CC-CCCCCCHHHHHHHHHHHHHCC
Q ss_conf 0098999999999999999999999999984123-----48-898683569999999996409
Q gi|254780697|r 85 FAYGSFASVLVNFFILAGVVFVLIQFMNKLVKQT-----EN-VKNPPAEVQLLTEIRDLLQKN 141 (141)
Q Consensus 85 i~yG~fl~aiI~FlIiA~viFlivk~~nk~~~~~-----e~-~~~~~~e~~LL~EIRDlLkkn 141 (141)
++||+|++++|||+|+||++|++||++||+++++ |+ +++||+|+.||+||||+|+|.
T Consensus 68 i~yG~Fi~~vinFlIiAf~iFl~Vk~inkl~~~~~~~~~e~~~~~~~~e~~LLtEIRDLL~~~ 130 (130)
T COG1970 68 IAYGAFIQAVINFLIIAFAIFLVVKAINKLRRKLEKEEPEAPAPAPPAEEVLLTEIRDLLKKQ 130 (130)
T ss_pred EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 528589999999999999999999999998887750255778999966789999999998549
No 3
>PRK00567 mscL large-conductance mechanosensitive channel; Reviewed
Probab=100.00 E-value=0 Score=311.36 Aligned_cols=127 Identities=43% Similarity=0.801 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHCCCCCCHH
Q ss_conf 78999999983666999999999998999999999976666778750465674432576276666311232101660000
Q gi|254780697|r 7 VFNEFKKFIARGNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPLSSEIKSSLISEARKQGAVFA 86 (141)
Q Consensus 7 mlkeFK~Fi~rGNVidLAVavIIG~AF~~iV~slv~diimPlIg~i~g~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~i~ 86 (141)
|+||||+|++||||+|||||||||+||++||+|||+|+|||+||+++| ++||+++++.+++.. ...++..+.
T Consensus 1 ml~eFK~Fi~rGNviDLAVgvIiG~AF~~iV~slv~~ii~PlI~~~~g-~~~~~~l~~~l~~~~-------~~~~~~~i~ 72 (134)
T PRK00567 1 MLKEFKEFAMRGNVVDLAVGVIIGAAFGKIVTSLVDDIIMPPIGLLIG-GVDFSNLAIVLKEAQ-------GDAPAVTIN 72 (134)
T ss_pred CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHCEEEECCCC-------CCCCCCEEC
T ss_conf 917899999816789999999999999999999999999888998617-877556023314642-------345541001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCCCHHHHHHHHHHHHHCC
Q ss_conf 9899999999999999999999999998412348---898683569999999996409
Q gi|254780697|r 87 YGSFASVLVNFFILAGVVFVLIQFMNKLVKQTEN---VKNPPAEVQLLTEIRDLLQKN 141 (141)
Q Consensus 87 yG~fl~aiI~FlIiA~viFlivk~~nk~~~~~e~---~~~~~~e~~LL~EIRDlLkkn 141 (141)
||+|++++|||+|+|+++|++||+|||+++++++ +++||+|++||+||||+|++.
T Consensus 73 yG~fl~aiInFlIia~vvFliVk~~nk~~~k~~~~~~~~~~~~e~~lL~EIRDlL~~~ 130 (134)
T PRK00567 73 YGVFINAVIDFLIIAFAIFLVVKLINKLRRKKEEPAAPPAPTTEEVLLTEIRDLLKAQ 130 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 4099999999999999999999999998624578999998685899999999999844
No 4
>pfam01741 MscL Large-conductance mechanosensitive channel, MscL.
Probab=100.00 E-value=0 Score=311.25 Aligned_cols=124 Identities=46% Similarity=0.827 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHCCCCCCHH
Q ss_conf 78999999983666999999999998999999999976666778750465674432576276666311232101660000
Q gi|254780697|r 7 VFNEFKKFIARGNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPLSSEIKSSLISEARKQGAVFA 86 (141)
Q Consensus 7 mlkeFK~Fi~rGNVidLAVavIIG~AF~~iV~slv~diimPlIg~i~g~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~i~ 86 (141)
|+||||+|++||||+|||||||||+||+++|+|||+|+|||+||+++| ++||+++++.+.++ .+++.+.
T Consensus 1 mlkeFK~Fi~rGNVidLAVgvIIG~AF~~iV~slv~~ii~PlI~~~~g-~~~~~~~~~~~~~~----------~~~~~i~ 69 (127)
T pfam01741 1 MLKEFKEFAMRGNVVDLAVGVVIGGAFGKIVSSLVADIIMPLIGRLLG-GVDFSDLSITLIGD----------VGAVTLN 69 (127)
T ss_pred CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHCCCEECCC----------CCCHHEE
T ss_conf 917899999815789999999999889999999999999998998727-87876610000256----------7630120
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCCCHHHHHHHHHHHHHCC
Q ss_conf 9899999999999999999999999998412348---898683569999999996409
Q gi|254780697|r 87 YGSFASVLVNFFILAGVVFVLIQFMNKLVKQTEN---VKNPPAEVQLLTEIRDLLQKN 141 (141)
Q Consensus 87 yG~fl~aiI~FlIiA~viFlivk~~nk~~~~~e~---~~~~~~e~~LL~EIRDlLkkn 141 (141)
||+|++++|||+|+|+++|++||+|||+++++++ +++||+|++||+||||+|||+
T Consensus 70 yG~fl~avI~FlIia~vvFl~Vk~~nk~~~k~~~~~~~~~~~~e~~LL~EIRDlLkks 127 (127)
T pfam01741 70 YGLFIQAVINFLIIAFAIFLVIKAINKLRKKEEVEEAEAVPDAQEVLLTEIRDLLKQT 127 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 9999999999999999999999999998723678999988981889999999987059
No 5
>PRK13955 mscL large-conductance mechanosensitive channel; Provisional
Probab=100.00 E-value=0 Score=307.70 Aligned_cols=119 Identities=44% Similarity=0.873 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHCCCCCCHH
Q ss_conf 78999999983666999999999998999999999976666778750465674432576276666311232101660000
Q gi|254780697|r 7 VFNEFKKFIARGNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPLSSEIKSSLISEARKQGAVFA 86 (141)
Q Consensus 7 mlkeFK~Fi~rGNVidLAVavIIG~AF~~iV~slv~diimPlIg~i~g~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~i~ 86 (141)
||||||+|++||||+|||||||||+||+++|+|||+|+|||+||+++| ++||+++.+.++ ++.+.
T Consensus 1 MlkeFK~Fi~rGNVidLAVaViiG~AF~~iV~slv~diimPlIg~~~g-~~df~~l~~~i~--------------~~~i~ 65 (130)
T PRK13955 1 MWNEFKKFAFKGNVIDLAVGVVIGAAFGKIVSSLVKDIITPLLGMVLG-GVDFTDLKFTFG--------------KSSIM 65 (130)
T ss_pred CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHEEEEEC--------------CCEEC
T ss_conf 917899999805799999999999999999999999999887898638-987002037636--------------41040
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 98999999999999999999999999984123-----4889868356999999999640
Q gi|254780697|r 87 YGSFASVLVNFFILAGVVFVLIQFMNKLVKQT-----ENVKNPPAEVQLLTEIRDLLQK 140 (141)
Q Consensus 87 yG~fl~aiI~FlIiA~viFlivk~~nk~~~~~-----e~~~~~~~e~~LL~EIRDlLkk 140 (141)
||+|++++|||+|+||++|++||+|||+++++ +++++|++|++||+||||+|||
T Consensus 66 ~G~fl~avI~FlIiA~vvFl~Vk~~nk~~~~~~~~~~~~~~~p~~e~~LL~EIRDlL~~ 124 (130)
T PRK13955 66 YGNFIQTIFDFLIIAASIFMFVKVFNKLTSKKEEEKEEEIPEPTKEEELLGEIRDLLKQ 124 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999998865166899999988089999999999998
No 6
>PRK13953 mscL large-conductance mechanosensitive channel; Provisional
Probab=100.00 E-value=0 Score=303.35 Aligned_cols=119 Identities=38% Similarity=0.784 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHCCCCCCHH
Q ss_conf 78999999983666999999999998999999999976666778750465674432576276666311232101660000
Q gi|254780697|r 7 VFNEFKKFIARGNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPLSSEIKSSLISEARKQGAVFA 86 (141)
Q Consensus 7 mlkeFK~Fi~rGNVidLAVavIIG~AF~~iV~slv~diimPlIg~i~g~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~i~ 86 (141)
|+||||+|++||||+|||||||||+||++||+|||+|+|||+||+++| ++||+++.+.++ ++.+.
T Consensus 1 MlkeFK~Fi~rGNVidLAVavIiG~AF~~iV~slv~~ii~PlIg~i~g-~~d~~~l~~~~~--------------~~~i~ 65 (127)
T PRK13953 1 MLVEFRDFALKGNVLDLAVAVVIGAAFGKIVSSLVNNIIMPLVGVLLG-GLDFSDLSWKVG--------------KSVIQ 65 (127)
T ss_pred CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCEEEEEC--------------CCEEE
T ss_conf 917899999815789999999999999999999999888576897528-887310047746--------------40041
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 98999999999999999999999999984123---4889868356999999999640
Q gi|254780697|r 87 YGSFASVLVNFFILAGVVFVLIQFMNKLVKQT---ENVKNPPAEVQLLTEIRDLLQK 140 (141)
Q Consensus 87 yG~fl~aiI~FlIiA~viFlivk~~nk~~~~~---e~~~~~~~e~~LL~EIRDlLkk 140 (141)
||+|++++|||+|+||++|++||+|||+++++ ++++++|++++||+||||+|++
T Consensus 66 ~G~fl~aiInFlIia~vvfl~Vk~~n~~~~~~~~~~~~~~~~~~~~LL~EIRDlL~~ 122 (127)
T PRK13953 66 YGAFIQSIVDFLIIAFAIFIFVKLLTSFIKKKEQQVEETPVPPTEEYLKEIRDLLKE 122 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999988402789999999889999999999986
No 7
>PRK13954 mscL large-conductance mechanosensitive channel; Provisional
Probab=100.00 E-value=1.4e-45 Score=297.69 Aligned_cols=117 Identities=38% Similarity=0.739 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHCCCCCCHH
Q ss_conf 78999999983666999999999998999999999976666778750465674432576276666311232101660000
Q gi|254780697|r 7 VFNEFKKFIARGNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPLSSEIKSSLISEARKQGAVFA 86 (141)
Q Consensus 7 mlkeFK~Fi~rGNVidLAVavIIG~AF~~iV~slv~diimPlIg~i~g~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~i~ 86 (141)
|+||||+|++||||+|||||||||+||++||+|||+|+|||+||+++| ++||++.+. ...++
T Consensus 1 MlkeFK~Fi~rGNViDLAVaVIiGaAF~~IV~slv~~ii~PlIg~~~g-~~~~~~~~~-----------------~~~i~ 62 (120)
T PRK13954 1 MLKEFKEFALKGNVLDLAIAVVMGAAFNKIISSLVENIIMPLIGKIFG-SVDFAKEWS-----------------FWGIK 62 (120)
T ss_pred CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHH-----------------HHHCC
T ss_conf 917899999815789999999999999999999998767422998808-876765113-----------------53120
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCHHHHHHHHHHHHHCC
Q ss_conf 98999999999999999999999999984123488--98683569999999996409
Q gi|254780697|r 87 YGSFASVLVNFFILAGVVFVLIQFMNKLVKQTENV--KNPPAEVQLLTEIRDLLQKN 141 (141)
Q Consensus 87 yG~fl~aiI~FlIiA~viFlivk~~nk~~~~~e~~--~~~~~e~~LL~EIRDlLkkn 141 (141)
||+|++++|||+|+||++|++||++||++++++++ +++|+|++||+||||+||+.
T Consensus 63 yG~fl~avInFlIiA~viF~~Vk~~n~~~~~~~~~~~~~~~~~~~LL~EIRDlL~~~ 119 (120)
T PRK13954 63 YGLFIQSVIDFIIIAFALFIFVKIANTLMKKEEAEEEAVVEENVVLLTEIRDLLREK 119 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 999999999999999999999999999872457899999880668999999999827
No 8
>TIGR00220 mscL large conductance mechanosensitive channel protein; InterPro: IPR001185 Mechanosensitive ion channels (MscL) play a critical role in transducing physical stresses at the cell membrane into an electrochemical response. MscL is a protein which forms a channel organised as a homopentamer, with each subunit containing two transmembrane regions . Prokaryotes harbor a large-conductance mechanosensitive channel (gene mscL) that opens in response to stretch forces in the membrane lipid bilayer and may participate in the regulation of osmotic pressure changes within the cell .; GO: 0005216 ion channel activity, 0006810 transport, 0016020 membrane.
Probab=99.88 E-value=3.1e-22 Score=155.95 Aligned_cols=125 Identities=42% Similarity=0.797 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHCCCCCCHH
Q ss_conf 78999999983666999999999998999999999976666778750465674432576276666311232101660000
Q gi|254780697|r 7 VFNEFKKFIARGNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPLSSEIKSSLISEARKQGAVFA 86 (141)
Q Consensus 7 mlkeFK~Fi~rGNVidLAVavIIG~AF~~iV~slv~diimPlIg~i~g~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~i~ 86 (141)
+|++||+|++|||++|+|+|+++|++|++++++++.++++|+++.+.| +.+++++.+.+..... ......++
T Consensus 1 ~~~~~~~~~~~g~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g-------~~p~~~~~ 72 (139)
T TIGR00220 1 FWKEFKEFALRGNVVDLAVGVVIGGAFGKIVSSLVADLLAPLLGLLLG-GLDFSGLSFTLGDAPG-------DVPAVGLK 72 (139)
T ss_pred CCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHCCCC-------CCHHHHHH
T ss_conf 911367787605345678877862467889999999999888887631-2341023433300245-------30145666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CC--CCCC----CHHHHHHHHHHHHH
Q ss_conf 989999999999999999999999999841234---88--9868----35699999999964
Q gi|254780697|r 87 YGSFASVLVNFFILAGVVFVLIQFMNKLVKQTE---NV--KNPP----AEVQLLTEIRDLLQ 139 (141)
Q Consensus 87 yG~fl~aiI~FlIiA~viFlivk~~nk~~~~~e---~~--~~~~----~e~~LL~EIRDlLk 139 (141)
||.|+++++||++++|.+|++++.+|+++++++ +. ++|+ .+..+++|+||+++
T Consensus 73 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 134 (139)
T TIGR00220 73 YGEFIQNVINFLIIAFAIFLVIKLLNKLRRKKKPEEEAAAPAPDPVLEAQENLLTEIRDLLK 134 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 78899999999999999999999987765421111222100221255678899999999998
No 9
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=94.21 E-value=0.064 Score=32.28 Aligned_cols=32 Identities=9% Similarity=0.256 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q ss_conf 000989999999999999999-99999999984
Q gi|254780697|r 84 VFAYGSFASVLVNFFILAGVV-FVLIQFMNKLV 115 (141)
Q Consensus 84 ~i~yG~fl~aiI~FlIiA~vi-Flivk~~nk~~ 115 (141)
.|+||.|+-.+|||+|..+++ ++..+|+.+..
T Consensus 15 gidw~t~~~q~I~F~il~~ll~kf~~~pi~~~L 47 (173)
T PRK13453 15 GVEWGTVIVQVLTFIVLLALLKKFAWGPLKDVM 47 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 997899999999999999999999898999999
No 10
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=93.99 E-value=0.078 Score=31.76 Aligned_cols=40 Identities=20% Similarity=0.429 Sum_probs=31.5
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q ss_conf 32101660000989999999999999999-99999999984
Q gi|254780697|r 76 SEARKQGAVFAYGSFASVLVNFFILAGVV-FVLIQFMNKLV 115 (141)
Q Consensus 76 ~~~~~~~~~i~yG~fl~aiI~FlIiA~vi-Flivk~~nk~~ 115 (141)
++...++-.+++..|++.+|||+|+-+++ |++-+|+.+.-
T Consensus 8 a~e~~~~fg~n~~~l~~~iInf~Il~~iL~~f~~~pi~~~L 48 (174)
T PRK07352 8 ATEASGGFGLNLNLLETNLINLAIVIGLLYYFLRGFLGKIL 48 (174)
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99763788989128999999999999999999598999999
No 11
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=91.21 E-value=0.3 Score=28.20 Aligned_cols=31 Identities=13% Similarity=0.373 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q ss_conf 00989999999999999999-99999999984
Q gi|254780697|r 85 FAYGSFASVLVNFFILAGVV-FVLIQFMNKLV 115 (141)
Q Consensus 85 i~yG~fl~aiI~FlIiA~vi-Flivk~~nk~~ 115 (141)
|+|+.|+-.+|||+|..+++ +++.+|+.+.-
T Consensus 3 in~~t~i~q~inF~il~~il~kf~~~pi~~~l 34 (159)
T PRK13461 3 INIPTIIATIINFIILLLILKHFFFDKIKAVI 34 (159)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 85999999999999999999999788899999
No 12
>PRK13415 flagella biosynthesis protein FliZ; Provisional
Probab=90.04 E-value=0.91 Score=25.25 Aligned_cols=35 Identities=11% Similarity=0.318 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 60000989999999999999999999999999841
Q gi|254780697|r 82 GAVFAYGSFASVLVNFFILAGVVFVLIQFMNKLVK 116 (141)
Q Consensus 82 ~~~i~yG~fl~aiI~FlIiA~viFlivk~~nk~~~ 116 (141)
...+.+..|+.-+--...+.+.+|.++|.+||..+
T Consensus 65 a~~vs~~D~v~mi~Al~fVi~Liy~llkfl~kr~~ 99 (216)
T PRK13415 65 APSVSAFDFVKMIGALLFVIFLIYALVKWLNKRNR 99 (216)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 98654999999999999999999999999865210
No 13
>pfam00606 Glycoprotein_B Herpesvirus Glycoprotein B. This family of proteins contains a transmembrane region.
Probab=88.22 E-value=1.9 Score=23.33 Aligned_cols=39 Identities=15% Similarity=0.359 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHCCHHHHHHHHHHHHH---HHHHHHHHHH
Q ss_conf 01278999999983666999999999998---9999999999
Q gi|254780697|r 4 GTPVFNEFKKFIARGNVIDLSVGIIIGGA---FNRVVQSIVE 42 (141)
Q Consensus 4 ~~~mlkeFK~Fi~rGNVidLAVavIIG~A---F~~iV~slv~ 42 (141)
...+++++-+|..-=..+.-|||-++|++ |+++|+.+++
T Consensus 618 ~~~~~~gl~~~~~~LG~vGk~vg~vv~~v~ga~~siVsG~~s 659 (711)
T pfam00606 618 RPAFVRGLDDFFQGLGAVGKAVGNVVSGVAGAVGSIVSGVVS 659 (711)
T ss_pred CHHHHHHHHHHHHHHHHHCHHHEEHHHHHHHHHHHHHHHHHH
T ss_conf 427999899998654242430100245467888888888898
No 14
>TIGR02865 spore_II_E stage II sporulation protein E; InterPro: IPR014221 This entry contains the stage II sporulation protein E (SpoIIE), which is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation and it has phosphatase activity, located in the C-terminal region, which is required to activate sigma-F. All members of this entry are found in endospore-forming Gram-positive bacteria. A homologous protein, not a member of this entry, is found in the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis..
Probab=88.20 E-value=1.3 Score=24.41 Aligned_cols=110 Identities=19% Similarity=0.387 Sum_probs=53.3
Q ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC---CEEECCCCCCCCHHHHHCCCCCCHHHHHHHHH
Q ss_conf 366699999999999899999999997666677875046567443---25762766663112321016600009899999
Q gi|254780697|r 17 RGNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSN---YFLPLSSEIKSSLISEARKQGAVFAYGSFASV 93 (141)
Q Consensus 17 rGNVidLAVavIIG~AF~~iV~slv~diimPlIg~i~g~g~~f~~---~~~~l~~~~~~~~~~~~~~~~~~i~yG~fl~a 93 (141)
.|-=+.=|+|++|| ++..|.+.-.++-+|.+++ |.+++ ..++..+-..+.... .+ ++|+-+.=
T Consensus 198 gGs~~G~A~Gvv~G-----~i~~l~~~~~~~~~g~~gP--PtLsDsqamaYvf~GLLgG~Fk~----~~---K~gt~~gy 263 (794)
T TIGR02865 198 GGSGAGAAIGVVIG-----VILGLANNANLIQIGVFGP--PTLSDSQAMAYVFAGLLGGIFKE----LG---KIGTAIGY 263 (794)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHH----HH---HHHHHHHH
T ss_conf 23214789999999-----9998641122013311348--65203679999999999989875----21---79999999
Q ss_pred HHHHHHH--------------------HHHHHHHH--HHHHHHHHC----CCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 9999999--------------------99999999--999998412----34889868356999999999640
Q gi|254780697|r 94 LVNFFIL--------------------AGVVFVLI--QFMNKLVKQ----TENVKNPPAEVQLLTEIRDLLQK 140 (141)
Q Consensus 94 iI~FlIi--------------------A~viFliv--k~~nk~~~~----~e~~~~~~~e~~LL~EIRDlLkk 140 (141)
+|-|+|+ |..+|+++ |.++|+.+. +++||.+..+.+....+||.-++
T Consensus 264 lvg~~i~~~Y~~~~~~~~~~lA~e~l~A~~lF~l~P~~~~~~~~~~l~~~~~aPP~~~~~~~Y~~k~r~I~~~ 336 (794)
T TIGR02865 264 LVGFLILAFYTQGSVAFSLALAYEVLIAALLFLLIPNKIYKKLERELDGEKKAPPQKDLQEDYIRKVREIAAE 336 (794)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 9999999998065133444468999999999998689999998975786325778455222255567899999
No 15
>pfam09851 DUF2078 Predicted membrane protein (DUF2078). This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=87.98 E-value=1.8 Score=23.45 Aligned_cols=47 Identities=17% Similarity=0.430 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf 098999999999999999999999999984123488986835699999
Q gi|254780697|r 86 AYGSFASVLVNFFILAGVVFVLIQFMNKLVKQTENVKNPPAEVQLLTE 133 (141)
Q Consensus 86 ~yG~fl~aiI~FlIiA~viFlivk~~nk~~~~~e~~~~~~~e~~LL~E 133 (141)
.++.++..++-++++++++|++++...+. ......++.++-.+.|.|
T Consensus 6 g~~~~~~~i~~~lli~~vv~l~~~~~~~~-~~~~~~~~~~~al~IL~e 52 (73)
T pfam09851 6 GWMGLLMLLFWLLLIAGVVYLLVRLFGGT-RGRSDSPPDSDALEILKE 52 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCCHHHHHHH
T ss_conf 58999999999999999999999997078-988999887689999999
No 16
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=87.52 E-value=0.79 Score=25.62 Aligned_cols=31 Identities=16% Similarity=0.129 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q ss_conf 00989999999999999999-99999999984
Q gi|254780697|r 85 FAYGSFASVLVNFFILAGVV-FVLIQFMNKLV 115 (141)
Q Consensus 85 i~yG~fl~aiI~FlIiA~vi-Flivk~~nk~~ 115 (141)
++.|.|+-.+|||+|+.|++ .++.+|+-+..
T Consensus 5 ~n~~~~i~~~i~FliL~~iL~kflykPi~k~l 36 (141)
T PRK08476 5 INPYLMLLTFVVFLLLIVILNSWLYKPLLKFM 36 (141)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 76779999999999999999999587899999
No 17
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=86.87 E-value=1.1 Score=24.72 Aligned_cols=33 Identities=18% Similarity=0.151 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q ss_conf 0000989999999999999999-99999999984
Q gi|254780697|r 83 AVFAYGSFASVLVNFFILAGVV-FVLIQFMNKLV 115 (141)
Q Consensus 83 ~~i~yG~fl~aiI~FlIiA~vi-Flivk~~nk~~ 115 (141)
..++.|.++-.+|+|+++.+++ ++..+|+++.-
T Consensus 12 l~~n~~~~iw~~i~F~il~~il~kf~~~pi~~~L 45 (173)
T PRK13460 12 LDVNPGLVVWTLVTFLVVVLVLKKFAWDVILKAL 45 (173)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8898779999999999999999999688899999
No 18
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=86.81 E-value=1.7 Score=23.56 Aligned_cols=34 Identities=18% Similarity=0.294 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q ss_conf 660000989999999999999999-9999999998
Q gi|254780697|r 81 QGAVFAYGSFASVLVNFFILAGVV-FVLIQFMNKL 114 (141)
Q Consensus 81 ~~~~i~yG~fl~aiI~FlIiA~vi-Flivk~~nk~ 114 (141)
+|-.++..-|.+++|||.|+.+++ |+.-+|+..+
T Consensus 18 ~~fg~N~niletnlINl~Ivi~iL~~f~~~~L~~~ 52 (184)
T CHL00019 18 GSFGFNTDILETNLINLSVVLGVLIYFGKGVLSDL 52 (184)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 66776740999999999999999999959999999
No 19
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=85.27 E-value=2.3 Score=22.77 Aligned_cols=31 Identities=19% Similarity=0.336 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q ss_conf 0989999999999999999-999999999841
Q gi|254780697|r 86 AYGSFASVLVNFFILAGVV-FVLIQFMNKLVK 116 (141)
Q Consensus 86 ~yG~fl~aiI~FlIiA~vi-Flivk~~nk~~~ 116 (141)
++..|+-.+|+|+|+-|++ ++.-||+.+..+
T Consensus 47 n~~~Fia~lIaF~ILl~lL~k~awKPI~k~Ld 78 (201)
T PRK06231 47 NFWVFIAHLIAFSILLLLGIFLFWKPTQRFLN 78 (201)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 86999999999999999999997878999999
No 20
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=83.56 E-value=1.7 Score=23.60 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q ss_conf 000989999999999999999-99999999984
Q gi|254780697|r 84 VFAYGSFASVLVNFFILAGVV-FVLIQFMNKLV 115 (141)
Q Consensus 84 ~i~yG~fl~aiI~FlIiA~vi-Flivk~~nk~~ 115 (141)
.|+|.+|+-.+|||+|.-+.+ .++.+|+.+..
T Consensus 2 ~idw~T~~~q~iNfliL~~lL~rFl~~Pv~~~i 34 (246)
T TIGR03321 2 LIDWFTVIAQLINFLILVWLLKRFLYRPILDAM 34 (246)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 010999999999999999999999688999999
No 21
>pfam00430 ATP-synt_B ATP synthase B/B' CF(0). Part of the CF(0) (base unit) of the ATP synthase. The base unit is thought to translocate protons through membrane (inner membrane in mitochondria, thylakoid membrane in plants, cytoplasmic membrane in bacteria). The B subunits are thought to interact with the stalk of the CF(1) subunits. This domain should not be confused with the ab CF(1) proteins (in the head of the ATP synthase) which are found in pfam00006
Probab=74.60 E-value=3.1 Score=21.98 Aligned_cols=27 Identities=26% Similarity=0.615 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q ss_conf 9999999999999999-99999999984
Q gi|254780697|r 89 SFASVLVNFFILAGVV-FVLIQFMNKLV 115 (141)
Q Consensus 89 ~fl~aiI~FlIiA~vi-Flivk~~nk~~ 115 (141)
+|+..+|||++.-+++ +++.+|+.+..
T Consensus 1 tl~~qlI~F~il~~il~~~~~~pi~~~l 28 (132)
T pfam00430 1 TLETNLINFLILVGLLIYFGYKPLGKIL 28 (132)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9888999999999999999798899999
No 22
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=73.66 E-value=5.5 Score=20.49 Aligned_cols=29 Identities=10% Similarity=0.363 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q ss_conf 89999999999999999-999999999841
Q gi|254780697|r 88 GSFASVLVNFFILAGVV-FVLIQFMNKLVK 116 (141)
Q Consensus 88 G~fl~aiI~FlIiA~vi-Flivk~~nk~~~ 116 (141)
++|.-.+|||+|.-+++ .++.+|+.+.-+
T Consensus 23 ~Tl~~q~i~FliL~~lL~kf~~~Pi~~~ld 52 (156)
T CHL00118 23 ATLPLMALQFLLLMVLLNAIFYKPIGKILD 52 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999999999999999998989999999
No 23
>pfam06637 PV-1 PV-1 protein (PLVAP). This family consists of several PV-1 (PLVAP) proteins which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms. The function of this family is unknown.
Probab=72.23 E-value=5.1 Score=20.68 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=22.2
Q ss_pred CCCHHHHHHHHHHHHHHHHH-HHHHHHH
Q ss_conf 60000989999999999999-9999999
Q gi|254780697|r 82 GAVFAYGSFASVLVNFFILA-GVVFVLI 108 (141)
Q Consensus 82 ~~~i~yG~fl~aiI~FlIiA-~viFliv 108 (141)
.-++.|=-|..++|.||||+ +|+|++.
T Consensus 22 wYYLryfFlFvSLIQfLIIlgLVLFmVY 49 (442)
T pfam06637 22 WYYLRYFFLFVSLIQFLIILGLVLFMIY 49 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 7999999999999999999999999640
No 24
>CHL00167 consensus
Probab=71.49 E-value=8.8 Score=19.26 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=24.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q ss_conf 16600009899999999999999999999-99999
Q gi|254780697|r 80 KQGAVFAYGSFASVLVNFFILAGVVFVLI-QFMNK 113 (141)
Q Consensus 80 ~~~~~i~yG~fl~aiI~FlIiA~viFliv-k~~nk 113 (141)
.+|-.++..-|-+.+||+.|+-+++|... ++...
T Consensus 19 ~~gFglNtnilETNlINl~ivigiL~~fg~~~L~~ 53 (182)
T CHL00167 19 EKSFGFNPDILEANVINILILLSGLIYLGKNFLGS 53 (182)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 58867774399999999999999999984676898
No 25
>pfam06783 UPF0239 Uncharacterized protein family (UPF0239).
Probab=71.45 E-value=2 Score=23.17 Aligned_cols=29 Identities=14% Similarity=0.366 Sum_probs=24.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66000098999999999999999999999
Q gi|254780697|r 81 QGAVFAYGSFASVLVNFFILAGVVFVLIQ 109 (141)
Q Consensus 81 ~~~~i~yG~fl~aiI~FlIiA~viFlivk 109 (141)
-+..+.||.|+.++.+|+-|++++++.=+
T Consensus 18 ~~~~~rygl~~gaifq~~ci~a~i~~~~k 46 (85)
T pfam06783 18 FELLIRYGLFLGAIFQFICILAAILMEPK 46 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHEEECCC
T ss_conf 99999999999999999999871231688
No 26
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=71.29 E-value=5.9 Score=20.32 Aligned_cols=31 Identities=19% Similarity=0.406 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q ss_conf 00989999999999999999-999999999841
Q gi|254780697|r 85 FAYGSFASVLVNFFILAGVV-FVLIQFMNKLVK 116 (141)
Q Consensus 85 i~yG~fl~aiI~FlIiA~vi-Flivk~~nk~~~ 116 (141)
|+ ++++-.+|+|++.-+++ +++.+|+.+...
T Consensus 4 ~n-~Tl~~q~i~Flil~~il~k~l~~Pi~~~ld 35 (140)
T PRK07353 4 FD-ATLPLMAVQFVLLTFILNALFYKPVGKVVE 35 (140)
T ss_pred CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 12-889999999999999999998888999999
No 27
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=70.51 E-value=9.2 Score=19.13 Aligned_cols=27 Identities=15% Similarity=0.400 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q ss_conf 989999999999999999-999999999
Q gi|254780697|r 87 YGSFASVLVNFFILAGVV-FVLIQFMNK 113 (141)
Q Consensus 87 yG~fl~aiI~FlIiA~vi-Flivk~~nk 113 (141)
...|+-.+|||+|...++ |+.-+|+..
T Consensus 24 ~~Dii~r~iNf~I~~gIL~yf~~kpi~~ 51 (170)
T PRK08475 24 ETDIIERTINFLIFVGILWYFAAKPIKN 51 (170)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6405999999999999999992878999
No 28
>PRK10297 N,N'-diacetylchitobiose-specific PTS system transporter subunit IIC; Provisional
Probab=61.19 E-value=10 Score=18.86 Aligned_cols=33 Identities=12% Similarity=0.141 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 098999999999999999999999999984123
Q gi|254780697|r 86 AYGSFASVLVNFFILAGVVFVLIQFMNKLVKQT 118 (141)
Q Consensus 86 ~yG~fl~aiI~FlIiA~viFlivk~~nk~~~~~ 118 (141)
++...+-.++++.+-.+..|=.+|.++|-+.++
T Consensus 405 ~~~~~il~~v~lii~~lIY~PF~K~~dK~~~~~ 437 (452)
T PRK10297 405 SVAALLVALFNLGVATLIYLPFVVVANKAQNAI 437 (452)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 689999999999999999999999999999999
No 29
>pfam12046 DUF3529 Protein of unknown function (DUF3529). This family of proteins is functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 176 to 190 amino acids in length.
Probab=60.91 E-value=14 Score=17.99 Aligned_cols=10 Identities=40% Similarity=0.361 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999964
Q gi|254780697|r 130 LLTEIRDLLQ 139 (141)
Q Consensus 130 LL~EIRDlLk 139 (141)
=|.|.|+.|+
T Consensus 159 EL~~L~~~L~ 168 (173)
T pfam12046 159 ELIELAKELQ 168 (173)
T ss_pred HHHHHHHHCC
T ss_conf 9999998548
No 30
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=58.35 E-value=15 Score=17.91 Aligned_cols=28 Identities=18% Similarity=0.228 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q ss_conf 89999999999999999-99999999984
Q gi|254780697|r 88 GSFASVLVNFFILAGVV-FVLIQFMNKLV 115 (141)
Q Consensus 88 G~fl~aiI~FlIiA~vi-Flivk~~nk~~ 115 (141)
.+|+-.+|+|+|.-+++ +++.+|+.+.-
T Consensus 5 ~T~~~~~I~F~il~~ll~~~~~~pi~~~l 33 (156)
T PRK05759 5 ATLIGQLIAFLILVWFCMKFVWPPIMKAL 33 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999787899999
No 31
>pfam06084 Cytomega_TRL10 Cytomegalovirus TRL10 protein. This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulfide-linked complex.
Probab=57.72 E-value=8.1 Score=19.46 Aligned_cols=24 Identities=33% Similarity=0.646 Sum_probs=12.0
Q ss_pred CCCHHH--HHHHHHHHHHHHHHHHHH
Q ss_conf 600009--899999999999999999
Q gi|254780697|r 82 GAVFAY--GSFASVLVNFFILAGVVF 105 (141)
Q Consensus 82 ~~~i~y--G~fl~aiI~FlIiA~viF 105 (141)
|++-.| |+|+.++|-.|.+-||+|
T Consensus 75 g~ysawgagsfvatlivllvvffviy 100 (170)
T pfam06084 75 GAYSAWGAGSFVATLIVLLVVFFVIY 100 (170)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHEEE
T ss_conf 22232045209999999998873367
No 32
>pfam08496 Peptidase_S49_N Peptidase family S49 N-terminal. This domain is found to the N-terminus of bacterial signal peptidases of the S49 family (pfam01343).
Probab=57.38 E-value=16 Score=17.62 Aligned_cols=15 Identities=27% Similarity=0.494 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 098999999999999
Q gi|254780697|r 86 AYGSFASVLVNFFIL 100 (141)
Q Consensus 86 ~yG~fl~aiI~FlIi 100 (141)
.||.|+.-.+++++.
T Consensus 6 eYglFLaK~vTiv~a 20 (154)
T pfam08496 6 EYGLFLAKTVTVVVA 20 (154)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999999
No 33
>PRK00376 lspA lipoprotein signal peptidase; Reviewed
Probab=54.59 E-value=18 Score=17.34 Aligned_cols=34 Identities=21% Similarity=0.657 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE
Q ss_conf 699999999999899999999997666677875046567443257
Q gi|254780697|r 20 VIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFL 64 (141)
Q Consensus 20 VidLAVavIIG~AF~~iV~slv~diimPlIg~i~g~g~~f~~~~~ 64 (141)
...++.+.++|||.+.+.+-+. .|.-+||=++.+
T Consensus 93 ~~~~~l~li~gGaiGNliDR~~-----------~G~VvDFi~~~~ 126 (162)
T PRK00376 93 LLAIAYALILGGALGNLIDRFF-----------HGHVVDFIDFYW 126 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-----------CCCCCEEEEECC
T ss_conf 9999999999866422889971-----------797765888657
No 34
>PRK12996 ulaA ascorbate-specific PTS system enzyme IIC; Reviewed
Probab=52.03 E-value=20 Score=17.09 Aligned_cols=37 Identities=24% Similarity=0.481 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 9999999899999999997666677875046567443
Q gi|254780697|r 25 VGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSN 61 (141)
Q Consensus 25 VavIIG~AF~~iV~slv~diimPlIg~i~g~g~~f~~ 61 (141)
-|-++|+-.+.+.-|+---+..|+.|.+.-.+..|+|
T Consensus 370 rgAiig~Fv~Glii~flpa~llp~lg~lg~~~~tf~d 406 (463)
T PRK12996 370 RGAMIGAFANGLLITFLPVLLLPVLGAIGFANTTFSD 406 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 7999999999899999999999998652656776377
No 35
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=50.49 E-value=19 Score=17.18 Aligned_cols=28 Identities=18% Similarity=0.397 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q ss_conf 8999999999999999999999-999984
Q gi|254780697|r 88 GSFASVLVNFFILAGVVFVLIQ-FMNKLV 115 (141)
Q Consensus 88 G~fl~aiI~FlIiA~viFlivk-~~nk~~ 115 (141)
+.||..+|-|.|+-|+++-.|. +++|+.
T Consensus 2 ~~fIgqLI~Faii~f~~~KfVvP~~~k~l 30 (445)
T PRK13428 2 STFIGQLIGFAVIVFLVVRFVVPPVRRLM 30 (445)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 13999999999999999999852799999
No 36
>PRK09592 celD cellobiose phosphotransferase system IIC component; Reviewed
Probab=49.17 E-value=22 Score=16.81 Aligned_cols=15 Identities=7% Similarity=0.124 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 699999999999899
Q gi|254780697|r 20 VIDLSVGIIIGGAFN 34 (141)
Q Consensus 20 VidLAVavIIG~AF~ 34 (141)
++.|-+++-||-...
T Consensus 88 i~sl~~a~~iay~la 102 (449)
T PRK09592 88 ILALYFVLSFAYELT 102 (449)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999999
No 37
>pfam04011 LemA LemA family. The members of this family are related to the LemA protein. LemA contains an amino terminal predicted transmembrane helix. It has been predicted that the small amino terminus is extracellular. The exact molecular function of this protein is uncertain.
Probab=47.07 E-value=23 Score=16.66 Aligned_cols=16 Identities=25% Similarity=0.177 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999999984
Q gi|254780697|r 100 LAGVVFVLIQFMNKLV 115 (141)
Q Consensus 100 iA~viFlivk~~nk~~ 115 (141)
+.+.+++.+..||++.
T Consensus 11 ~v~l~~~~i~~YN~lv 26 (186)
T pfam04011 11 LIVLALLAGCSYNRLV 26 (186)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999999999
No 38
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=46.30 E-value=25 Score=16.54 Aligned_cols=31 Identities=19% Similarity=0.182 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q ss_conf 00989999999999999999-99999999984
Q gi|254780697|r 85 FAYGSFASVLVNFFILAGVV-FVLIQFMNKLV 115 (141)
Q Consensus 85 i~yG~fl~aiI~FlIiA~vi-Flivk~~nk~~ 115 (141)
+.+++++..+++|+|.-+.+ +++.+|+.+..
T Consensus 4 ~~~~~~~~~~i~F~ill~ll~~~~~~pi~~~l 35 (161)
T COG0711 4 FNDTNILWQLIAFVILLWLLKKFVWKPILKAL 35 (161)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 21247999999999999999999686799999
No 39
>PRK08600 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=45.78 E-value=25 Score=16.49 Aligned_cols=34 Identities=9% Similarity=0.109 Sum_probs=25.0
Q ss_pred CHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 00098999999-99999999999999999998412
Q gi|254780697|r 84 VFAYGSFASVL-VNFFILAGVVFVLIQFMNKLVKQ 117 (141)
Q Consensus 84 ~i~yG~fl~ai-I~FlIiA~viFlivk~~nk~~~~ 117 (141)
.+.=.-.++++ |.|-..||.+-++++.+.+....
T Consensus 67 PLPQALvLTAIVIg~a~tA~~LaL~~r~y~~~gt~ 101 (113)
T PRK08600 67 PLPQALILTAIVISFGVTAFFLVLAYRTYKELGTD 101 (113)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 20589999999999999999999999999996884
No 40
>COG3477 Predicted periplasmic/secreted protein [Function unknown]
Probab=44.42 E-value=22 Score=16.88 Aligned_cols=25 Identities=24% Similarity=0.195 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999899999999997666677
Q gi|254780697|r 24 SVGIIIGGAFNRVVQSIVEDIMMPLV 49 (141)
Q Consensus 24 AVavIIG~AF~~iV~slv~diimPlI 49 (141)
|-+=||||-++++|++=.+ +.+|+=
T Consensus 15 ~~igIi~G~vS~~VK~GwE-v~~PPR 39 (176)
T COG3477 15 AFIGIIAGLVSAIVKWGWE-VPLPPR 39 (176)
T ss_pred HHHHHHHHHHHHHHHHCCC-CCCCCC
T ss_conf 9999999999999874450-337999
No 41
>PRK11469 hypothetical protein; Provisional
Probab=38.80 E-value=32 Score=15.83 Aligned_cols=13 Identities=38% Similarity=0.769 Sum_probs=11.0
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 7666677875046
Q gi|254780697|r 43 DIMMPLVGCVMGN 55 (141)
Q Consensus 43 diimPlIg~i~g~ 55 (141)
..+||++|++.|.
T Consensus 65 Q~~MPllG~~~G~ 77 (206)
T PRK11469 65 ETLTPLIGWGMGM 77 (206)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999999
No 42
>pfam10104 Brr6_like_C_C Di-sulfide bridge nucleocytoplasmic transport domain. Brr6_like_C_C is the highly conserved C-terminal region of a group of proteins found in fungi. It carries four highly conserved cysteine residues. It is suggested that members of the family interact with each other via di-sulfide bridges to form a complex which is involved in nucleocytoplasmic transport.
Probab=37.28 E-value=34 Score=15.68 Aligned_cols=25 Identities=12% Similarity=0.537 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999
Q gi|254780697|r 89 SFASVLVNFFILAGVVFVLIQFMNK 113 (141)
Q Consensus 89 ~fl~aiI~FlIiA~viFlivk~~nk 113 (141)
.++|-++|++++...+|++...+..
T Consensus 3 ~ylQl~~N~~~~~~~ly~~~~~~~t 27 (135)
T pfam10104 3 SYLQLIFNIILVSIILYLVYAFFKT 27 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6999999999999999999999999
No 43
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=34.94 E-value=37 Score=15.45 Aligned_cols=40 Identities=20% Similarity=0.182 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 989999999999999999-9999999998412348898683
Q gi|254780697|r 87 YGSFASVLVNFFILAGVV-FVLIQFMNKLVKQTENVKNPPA 126 (141)
Q Consensus 87 yG~fl~aiI~FlIiA~vi-Flivk~~nk~~~~~e~~~~~~~ 126 (141)
.|-|+...+.-++.+.+. .+..+.++|++|+++.++++.|
T Consensus 415 ~GiW~a~~is~~~~~~~~~~~~~r~~kkl~k~~~~~~~~~~ 455 (456)
T PRK09575 415 DGVWLAMPLSNIALSLVVAPMLWRDLKKLKKKHPTETSVAT 455 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 59999999999999999999999999998542878668788
No 44
>pfam06295 DUF1043 Protein of unknown function (DUF1043). This family consists of several hypothetical bacterial proteins of unknown function.
Probab=32.45 E-value=33 Score=15.76 Aligned_cols=20 Identities=40% Similarity=0.634 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 69999999999989999999
Q gi|254780697|r 20 VIDLSVGIIIGGAFNRVVQS 39 (141)
Q Consensus 20 VidLAVavIIG~AF~~iV~s 39 (141)
+|.|.||+|||..++...++
T Consensus 3 li~lvvG~iiG~~~~R~~~~ 22 (128)
T pfam06295 3 IIGLIVGLIIGLIIMRLTNP 22 (128)
T ss_pred HHHHHHHHHHHHHHHHHCCC
T ss_conf 89999999999999997274
No 45
>TIGR00739 yajC preprotein translocase, YajC subunit; InterPro: IPR003849 This entry describes proteins of unknown function..
Probab=32.23 E-value=22 Score=16.81 Aligned_cols=30 Identities=20% Similarity=0.356 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHCCC
Q ss_conf 999999999999999-999999999841234
Q gi|254780697|r 90 FASVLVNFFILAGVV-FVLIQFMNKLVKQTE 119 (141)
Q Consensus 90 fl~aiI~FlIiA~vi-Flivk~~nk~~~~~e 119 (141)
+++.++=|+++-++. |++++|=.|-+++.+
T Consensus 2 ~l~~l~~lv~~~~~FYFl~~RPQ~K~~k~~~ 32 (86)
T TIGR00739 2 FLTTLLPLVLIFLIFYFLIIRPQRKRRKAHK 32 (86)
T ss_pred CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 5215899999999999970497798889888
No 46
>COG0239 CrcB Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]
Probab=30.56 E-value=44 Score=15.01 Aligned_cols=53 Identities=21% Similarity=0.377 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999989999999999766667787504656744325762766663112321016600009899999999999999
Q gi|254780697|r 23 LSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPLSSEIKSSLISEARKQGAVFAYGSFASVLVNFFILAG 102 (141)
Q Consensus 23 LAVavIIG~AF~~iV~slv~diimPlIg~i~g~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~i~yG~fl~aiI~FlIiA~ 102 (141)
.-..|.+|+|++++.--++...++|..+ ..++||.++-+++-=+++++
T Consensus 4 ~~l~v~~GGa~GA~lR~~l~~~~~~~~~--------------------------------~~fP~GTl~vNv~GsFllG~ 51 (126)
T COG0239 4 LLLLVAIGGALGALLRYLLSLLVNRRLG--------------------------------PGFPLGTLLVNVVGSFLLGF 51 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCC--------------------------------CCCCHHHHHHHHHHHHHHHH
T ss_conf 5899998159999999999998510357--------------------------------99966899999999999999
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780697|r 103 VVFVL 107 (141)
Q Consensus 103 viFli 107 (141)
...+.
T Consensus 52 ~~~~~ 56 (126)
T COG0239 52 LTALF 56 (126)
T ss_pred HHHHH
T ss_conf 99998
No 47
>PRK08156 surface presentation of antigens protein SpaS; Validated
Probab=30.21 E-value=44 Score=14.97 Aligned_cols=21 Identities=14% Similarity=0.292 Sum_probs=11.8
Q ss_pred HHHHHHHHHHCCHHHHHHHHH
Q ss_conf 899999998366699999999
Q gi|254780697|r 8 FNEFKKFIARGNVIDLSVGII 28 (141)
Q Consensus 8 lkeFK~Fi~rGNVidLAVavI 28 (141)
++|||..-...+.++|+-.++
T Consensus 119 i~GlKRiFS~k~LvEl~Ksll 139 (367)
T PRK08156 119 VKGLKKIFSLRTVKEFVKALL 139 (367)
T ss_pred HHHHCCCCCHHHHHHHHHHHH
T ss_conf 441001135768999999999
No 48
>TIGR02976 phageshock_pspB phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages . Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one ..
Probab=27.80 E-value=49 Score=14.72 Aligned_cols=43 Identities=16% Similarity=0.263 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHC-CCCCCCCCCHHHHHHHHHHHH
Q ss_conf 999999999999999----9998412-348898683569999999996
Q gi|254780697|r 96 NFFILAGVVFVLIQF----MNKLVKQ-TENVKNPPAEVQLLTEIRDLL 138 (141)
Q Consensus 96 ~FlIiA~viFlivk~----~nk~~~~-~e~~~~~~~e~~LL~EIRDlL 138 (141)
-|+++...+|+++.. .-|++.| +......+.|.++|+|.-+.=
T Consensus 4 ~~~~~P~i~f~~fv~~~wl~lHy~~~~~~~~~l~~~d~~~L~~L~~~A 51 (75)
T TIGR02976 4 FFLAIPLIIFVIFVALLWLLLHYRSKRKTAASLSTDDLQLLQELYAKA 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 899999999999999999999852366400111579999999999999
No 49
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=27.62 E-value=34 Score=15.67 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHCC
Q ss_conf 9999999999999999-99999999984123
Q gi|254780697|r 89 SFASVLVNFFILAGVV-FVLIQFMNKLVKQT 118 (141)
Q Consensus 89 ~fl~aiI~FlIiA~vi-Flivk~~nk~~~~~ 118 (141)
..+..++=++++-.++ |++++|=+|-+++.
T Consensus 17 ~~~~~ll~~ili~~vfYfl~iRPQ~Kr~ke~ 47 (107)
T PRK05585 17 SGLTSLLPLVVFFAIFYFLIIRPQQKRQKEH 47 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 7679999999999999987426488999999
No 50
>PRK09449 nucleotidase; Provisional
Probab=27.30 E-value=13 Score=18.15 Aligned_cols=19 Identities=37% Similarity=0.492 Sum_probs=15.7
Q ss_pred CCCCHHHHHHHHHHHHHCC
Q ss_conf 8683569999999996409
Q gi|254780697|r 123 NPPAEVQLLTEIRDLLQKN 141 (141)
Q Consensus 123 ~~~~e~~LL~EIRDlLkkn 141 (141)
.|.-++.=|.|+.++|+||
T Consensus 207 ~p~~~I~~l~eL~~il~k~ 225 (225)
T PRK09449 207 APTYTVSSLHELEQLLCKH 225 (225)
T ss_pred CCCEEECCHHHHHHHHHCC
T ss_conf 9998988999999998459
No 51
>PRK09548 ascorbate-specific PTS system enzyme IIC/IIB; Provisional
Probab=26.52 E-value=52 Score=14.58 Aligned_cols=78 Identities=22% Similarity=0.157 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----CC--CCCCCCCCEEECCCCCCCCHHHHHCCCCCCHHHHH-HHHHHHHHHHHH
Q ss_conf 99899999999997666677875-----04--65674432576276666311232101660000989-999999999999
Q gi|254780697|r 30 GGAFNRVVQSIVEDIMMPLVGCV-----MG--NGTDFSNYFLPLSSEIKSSLISEARKQGAVFAYGS-FASVLVNFFILA 101 (141)
Q Consensus 30 G~AF~~iV~slv~diimPlIg~i-----~g--~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~i~yG~-fl~aiI~FlIiA 101 (141)
|+-=++++-+|++.+|+-+=++. .. +|..|+.|. +..++.. .-+.+--|. .-...--|++++
T Consensus 382 GG~kgAiig~Fv~Giiqv~gsa~~i~~~~~~~~~~~~~~w~--------g~~d~~l--~~p~~~~~~~~~~~~~~~~~~~ 451 (602)
T PRK09548 382 GGWKAVMKICFVMGIIEVLGSAWVIQLITSQSNGTQFNGWM--------GMADWAL--GFPPIAQGRLVGSKGFFFVLLA 451 (602)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--------CHHHHHH--HCCHHHHHHHHCCCHHHHHHHH
T ss_conf 55678877987875999987999999974014677654512--------2010475--2888883133134259999999
Q ss_pred HHHHHHHHHHHHHHHC
Q ss_conf 9999999999998412
Q gi|254780697|r 102 GVVFVLIQFMNKLVKQ 117 (141)
Q Consensus 102 ~viFlivk~~nk~~~~ 117 (141)
...+.+.-+-.++|.+
T Consensus 452 ~~~~~~~~~~~~l~~~ 467 (602)
T PRK09548 452 LALVYMIFASKQLRAK 467 (602)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999867876544
No 52
>KOG2493 consensus
Probab=25.96 E-value=53 Score=14.51 Aligned_cols=29 Identities=14% Similarity=0.159 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Q ss_conf 9899999999999999999999999--9984
Q gi|254780697|r 87 YGSFASVLVNFFILAGVVFVLIQFM--NKLV 115 (141)
Q Consensus 87 yG~fl~aiI~FlIiA~viFlivk~~--nk~~ 115 (141)
++.++...+-=++.++++|+.++|. +|..
T Consensus 232 ~~~~~is~~~g~i~a~i~~f~v~p~~~~ki~ 262 (512)
T KOG2493 232 WATILISVGLGVIAAFIVYFFVRPFMRRKIN 262 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999999999984188885325
No 53
>TIGR00410 lacE PTS system, lactose/cellobiose family IIC component; InterPro: IPR004501 This group of proteins consists of both the cellobiose specific and the lactose specific forms of the phosphotransferase system (PTS) IIC component. The IIC domain catalyzes the transfer of a phosphoryl group from the IIB domain to the substrate. When the IIC component and IIB components are in the same polypeptide chain they are designated IIBC.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane.
Probab=25.81 E-value=53 Score=14.50 Aligned_cols=35 Identities=14% Similarity=0.160 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 09899999999999999999999999998412348
Q gi|254780697|r 86 AYGSFASVLVNFFILAGVVFVLIQFMNKLVKQTEN 120 (141)
Q Consensus 86 ~yG~fl~aiI~FlIiA~viFlivk~~nk~~~~~e~ 120 (141)
+.-.++-.++|.+|..+++|=.+|.+||.+-++|+
T Consensus 415 ~v~g~v~~L~nL~I~~~iY~PF~~~~dK~~l~~ek 449 (450)
T TIGR00410 415 SVSGAVMQLINLLISFVIYLPFLKAWDKAKLAEEK 449 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 48999999999999999982499999998752116
No 54
>TIGR00359 cello_pts_IIC PTS system, cellobiose-specific IIC component; InterPro: IPR004796 The phosphotransferase system (PTS) consists of both the cellobiose specific and the lactose specific forms of the phosphotransferase system (PTS) IIC component. The IIC domain catalyzes the transfer of a phosphoryl group from the IIB domain to the substrate. When the IIC component and IIB components are in the same polypeptide chain they are designated IIBC. This family consists of the cellobiose specific form of the phosphotransferase system (PTS), IIC component.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane.
Probab=25.81 E-value=53 Score=14.50 Aligned_cols=35 Identities=14% Similarity=0.160 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 09899999999999999999999999998412348
Q gi|254780697|r 86 AYGSFASVLVNFFILAGVVFVLIQFMNKLVKQTEN 120 (141)
Q Consensus 86 ~yG~fl~aiI~FlIiA~viFlivk~~nk~~~~~e~ 120 (141)
+.-.++-.++|.+|..+++|=.+|.+||.+-++|+
T Consensus 415 ~v~g~v~~L~nL~I~~~iY~PF~~~~dK~~l~~ek 449 (450)
T TIGR00359 415 SVSGAVMQLINLLISFVIYLPFLKAWDKAKLAEEK 449 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 48999999999999999982499999998752116
No 55
>COG1455 CelB Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]
Probab=25.63 E-value=54 Score=14.47 Aligned_cols=30 Identities=10% Similarity=0.281 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 098999999999999999999999999984
Q gi|254780697|r 86 AYGSFASVLVNFFILAGVVFVLIQFMNKLV 115 (141)
Q Consensus 86 ~yG~fl~aiI~FlIiA~viFlivk~~nk~~ 115 (141)
+|-.++-.+++.++-.+++|=.+|.+||..
T Consensus 390 ~w~a~vlq~i~l~v~~lIY~PF~kv~dk~~ 419 (432)
T COG1455 390 DWRALVLQLINLVVAVLIYLPFFKVYDKQL 419 (432)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 489999999999999999978999998888
No 56
>pfam07274 DUF1440 Protein of unknown function (DUF1440). This family contains a number of bacterial proteins of unknown function approximately 180 residues long. These are possibly integral membrane proteins.
Probab=25.25 E-value=46 Score=14.86 Aligned_cols=34 Identities=24% Similarity=0.417 Sum_probs=14.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q ss_conf 66000098999999999999999999999-999984
Q gi|254780697|r 81 QGAVFAYGSFASVLVNFFILAGVVFVLIQ-FMNKLV 115 (141)
Q Consensus 81 ~~~~i~yG~fl~aiI~FlIiA~viFlivk-~~nk~~ 115 (141)
.+..+.|+.++... .|-|+=++.|+++- ...|.+
T Consensus 48 s~~~~~~~~~i~H~-~FSi~fA~~Y~~~ae~~pki~ 82 (136)
T pfam07274 48 SGHAVPWVSFIVHF-SFSIVFAVLYCLLAEKFPKIK 82 (136)
T ss_pred CCCEECEEEEEHHH-HHHHHHHHHHHHHHHHCCHHH
T ss_conf 89560205310378-999999999999999822436
No 57
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=24.57 E-value=47 Score=14.83 Aligned_cols=30 Identities=23% Similarity=0.415 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHC
Q ss_conf 89999999999999999-9999999998412
Q gi|254780697|r 88 GSFASVLVNFFILAGVV-FVLIQFMNKLVKQ 117 (141)
Q Consensus 88 G~fl~aiI~FlIiA~vi-Flivk~~nk~~~~ 117 (141)
|..+..++-|+++-.+. |++++|-.|-+++
T Consensus 6 ~~~~~~ll~~vl~~~ifyFli~RPQrKr~K~ 36 (97)
T COG1862 6 GSGLVLLLPLVLIFAIFYFLIIRPQRKRMKE 36 (97)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 5307799999999999998616788999999
No 58
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=24.45 E-value=56 Score=14.34 Aligned_cols=45 Identities=9% Similarity=0.121 Sum_probs=24.1
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899999998366699999999999899999999997666677875
Q gi|254780697|r 8 FNEFKKFIARGNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCV 52 (141)
Q Consensus 8 lkeFK~Fi~rGNVidLAVavIIG~AF~~iV~slv~diimPlIg~i 52 (141)
++|||.--...+++|++-.++==...+.++-.+..+-+..++.+.
T Consensus 131 i~GlKriFS~k~LvEl~KsllKv~~i~~v~~~~~~~~~~~~~~l~ 175 (352)
T PRK05702 131 LKGLKRMFSAQGLVELLKSLLKVLLVGGVAYFVLWSNLDELLSLA 175 (352)
T ss_pred HHCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 245231208889999999999999999999999999999999885
No 59
>pfam05961 Chordopox_A13L Chordopoxvirus A13L protein. This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus.
Probab=23.67 E-value=58 Score=14.25 Aligned_cols=32 Identities=19% Similarity=0.117 Sum_probs=14.8
Q ss_pred HHHHHHHHCCC---CCCCCCCHHHHHHHHHHHHHC
Q ss_conf 99999841234---889868356999999999640
Q gi|254780697|r 109 QFMNKLVKQTE---NVKNPPAEVQLLTEIRDLLQK 140 (141)
Q Consensus 109 k~~nk~~~~~e---~~~~~~~e~~LL~EIRDlLkk 140 (141)
-.|||...... ..+..|+.+++-|---|-|++
T Consensus 21 giYnkk~~~~~~~p~~~~~~~~e~~kT~yVd~L~~ 55 (68)
T pfam05961 21 GIYNKKTTTQQNNPSTERYEKMEDLKTGYVDKLKS 55 (68)
T ss_pred HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCH
T ss_conf 88513456678998633569830111067762157
No 60
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=22.33 E-value=47 Score=14.84 Aligned_cols=25 Identities=16% Similarity=0.498 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999841
Q gi|254780697|r 92 SVLVNFFILAGVVFVLIQFMNKLVK 116 (141)
Q Consensus 92 ~aiI~FlIiA~viFlivk~~nk~~~ 116 (141)
..++=|++....+|++++|-.|-++
T Consensus 4 ~~iim~vv~~~~~ffmiRpQkK~qk 28 (120)
T PRK06531 4 PTIIMFVVMLGLIFFMQRQQKKQAQ 28 (120)
T ss_pred HHHHHHHHHHHHHHHEECHHHHHHH
T ss_conf 2899999999999860374889999
No 61
>pfam11598 COMP Cartilage oligomeric matrix protein. This family of proteins represents the five-stranded coiled-coil domain of cartilage oligomeric matrix protein (COMP). This region has a binding site between two internal rings formed by Leu37 and Thr40.
Probab=22.20 E-value=53 Score=14.52 Aligned_cols=13 Identities=46% Similarity=0.705 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHC
Q ss_conf 6999999999640
Q gi|254780697|r 128 VQLLTEIRDLLQK 140 (141)
Q Consensus 128 ~~LL~EIRDlLkk 140 (141)
.++|.|+||.+++
T Consensus 14 ~q~l~elre~lr~ 26 (45)
T pfam11598 14 TQLLQELREDLRQ 26 (45)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999999
No 62
>KOG2639 consensus
Probab=21.83 E-value=64 Score=14.02 Aligned_cols=114 Identities=20% Similarity=0.324 Sum_probs=51.6
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHCCCCCCCCCCEE---------------ECCCCCCCCH
Q ss_conf 983666999999999998999999999976-----66677875046567443257---------------6276666311
Q gi|254780697|r 15 IARGNVIDLSVGIIIGGAFNRVVQSIVEDI-----MMPLVGCVMGNGTDFSNYFL---------------PLSSEIKSSL 74 (141)
Q Consensus 15 i~rGNVidLAVavIIG~AF~~iV~slv~di-----imPlIg~i~g~g~~f~~~~~---------------~l~~~~~~~~ 74 (141)
+.||++=+|=- .=.-|+++.+++.++. +.|+.=.+-- -.|....-+ +++++ .+..
T Consensus 264 iSrG~~w~li~---~Lclvtav~Sa~ldN~TtvLLltpv~IRLce-vm~L~p~pvLi~~vi~aNIGga~TPIGdP-pNvI 338 (685)
T KOG2639 264 ISRGHVWPLIC---LLCLVTAVLSAFLDNVTTVLLLTPVVIRLCE-VMNLDPHPVLIAVVIYANIGGAATPIGDP-PNVI 338 (685)
T ss_pred HHCCCCHHHHH---HHHHHHHHHHHHHCCCEEEEEECHHHHHHHH-HHCCCCCCEEEEEEEECCCCCCCCCCCCC-CCEE
T ss_conf 73698058999---9999999999996277279994589999999-84689974699998750556656758999-7179
Q ss_pred HH-HHCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 23-2101660000989999999999999999-999999999841234889868356999999
Q gi|254780697|r 75 IS-EARKQGAVFAYGSFASVLVNFFILAGVV-FVLIQFMNKLVKQTENVKNPPAEVQLLTEI 134 (141)
Q Consensus 75 ~~-~~~~~~~~i~yG~fl~aiI~FlIiA~vi-Flivk~~nk~~~~~e~~~~~~~e~~LL~EI 134 (141)
.+ .....-..++++.|--...-=.+.|.+. |+-.+.+..-++ ++...+|++++++-.||
T Consensus 339 Iatns~i~~~gv~f~~Ftahm~pgvlla~l~~~~~lrlly~~~~-~l~~k~~~e~~el~~ei 399 (685)
T KOG2639 339 IATNSEIPKAGVDFAVFTAHMLPGVLLAMLQTFMYLRLLYWNIE-ELMVKEPDEEVELKHEI 399 (685)
T ss_pred EEECCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECHH-HHHCCCCHHHHHHHHHH
T ss_conf 98444500047652231198878999999998666765301247-87614951777888877
No 63
>COG1971 Predicted membrane protein [Function unknown]
Probab=21.46 E-value=65 Score=13.98 Aligned_cols=33 Identities=27% Similarity=0.412 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999989999---------9999997666677875046
Q gi|254780697|r 23 LSVGIIIGGAFNRV---------VQSIVEDIMMPLVGCVMGN 55 (141)
Q Consensus 23 LAVavIIG~AF~~i---------V~slv~diimPlIg~i~g~ 55 (141)
.||++-.|.+-.+. ..+-+-..+||++|+..|.
T Consensus 18 Fav~l~~G~~~~k~~~~~~L~ia~~fG~f~~i~pliG~~~g~ 59 (190)
T COG1971 18 FAVSLGKGLAKHKIRFKEALVIALIFGVFQAIMPLIGWFIGK 59 (190)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999998315642510899999999999999999999999999
No 64
>pfam09819 ABC_cobalt ABC-type cobalt transport system, permease component. Members of this family of prokaryotic proteins include various hypothetical proteins as well as ABC-type cobalt transport systems.
Probab=21.35 E-value=65 Score=13.96 Aligned_cols=75 Identities=20% Similarity=0.304 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE---ECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 699999999999899999999997666677875046567443257---62766663112321016600009899999999
Q gi|254780697|r 20 VIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFL---PLSSEIKSSLISEARKQGAVFAYGSFASVLVN 96 (141)
Q Consensus 20 VidLAVavIIG~AF~~iV~slv~diimPlIg~i~g~g~~f~~~~~---~l~~~~~~~~~~~~~~~~~~i~yG~fl~aiI~ 96 (141)
+.|.-+..++|.+|+-|=-. .+.+-+|+-..+++-++-..+... .+... -..--.+.+|+.+ +|.++.+.++
T Consensus 1 l~DIi~~a~i~v~~Gvif~~-~~~~y~~l~~~~~~~~p~~~~i~~G~W~mag~---la~~iiRKPGaA~-~~E~laA~vE 75 (129)
T pfam09819 1 LKDIVVAAVLGVAFGVIFWG-WGYVYNALSALLTGLGPGAGGILYGLWFMAGP---LAALIIRKPGAAL-LGELLAALVE 75 (129)
T ss_pred CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH---HHHHHHCCCCHHH-HHHHHHHHHH
T ss_conf 93689999999999999999-99999999999713343278899979999986---8899746773999-9999999999
Q ss_pred HHH
Q ss_conf 999
Q gi|254780697|r 97 FFI 99 (141)
Q Consensus 97 FlI 99 (141)
.++
T Consensus 76 ~ll 78 (129)
T pfam09819 76 MLL 78 (129)
T ss_pred HHH
T ss_conf 994
No 65
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=21.04 E-value=66 Score=13.92 Aligned_cols=11 Identities=45% Similarity=0.649 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q ss_conf 00989999999
Q gi|254780697|r 85 FAYGSFASVLV 95 (141)
Q Consensus 85 i~yG~fl~aiI 95 (141)
++.|+|+..++
T Consensus 159 INiGafla~ll 169 (500)
T PRK09584 159 INIGSFFSMLA 169 (500)
T ss_pred HHHHHHHHHHH
T ss_conf 98999999999
No 66
>PRK11462 putative transporter; Provisional
Probab=20.76 E-value=67 Score=13.89 Aligned_cols=17 Identities=29% Similarity=0.702 Sum_probs=8.7
Q ss_pred CCCCHHHHHHHHHHHHH
Q ss_conf 86835699999999964
Q gi|254780697|r 123 NPPAEVQLLTEIRDLLQ 139 (141)
Q Consensus 123 ~~~~e~~LL~EIRDlLk 139 (141)
++++...+.+++|++++
T Consensus 210 ~~~~~~s~~~~l~~~~~ 226 (460)
T PRK11462 210 APPTTTSMREDLRDIWQ 226 (460)
T ss_pred CCCCCCCHHHHHHHHHC
T ss_conf 88664239999999973
No 67
>pfam01312 Bac_export_2 FlhB HrpN YscU SpaS Family. This family includes the following members: FlhB, HrpN, YscU, SpaS, HrcU SsaU and YopU. All of these proteins export peptides using the type III secretion system. The peptides exported are quite diverse.
Probab=20.61 E-value=67 Score=13.87 Aligned_cols=12 Identities=0% Similarity=0.138 Sum_probs=3.8
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999999
Q gi|254780697|r 93 VLVNFFILAGVV 104 (141)
Q Consensus 93 aiI~FlIiA~vi 104 (141)
+++.+++++++.
T Consensus 144 sllKv~li~~v~ 155 (343)
T pfam01312 144 SILKVVAVGLIF 155 (343)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999999
Done!