Query gi|254780697|ref|YP_003065110.1| large conductance mechanosensitive channel protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 141
No_of_seqs 109 out of 1037
Neff 4.9
Searched_HMMs 33803
Date Wed Jun 1 14:32:04 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780697.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2oar_A Large-conductance mech 100.0 2.3E-36 6.7E-41 241.7 10.9 106 2-119 19-125 (126)
2 >3hzq_A Large-conductance mech 99.9 4.6E-27 1.3E-31 185.0 8.8 82 19-118 1-82 (82)
3 >1q1v_A DEK protein; winged-he 47.6 16 0.00048 17.3 2.8 22 119-140 6-27 (70)
4 >2rdd_B UPF0092 membrane prote 40.9 24 0.0007 16.2 2.8 29 92-120 4-33 (37)
5 >1mz9_A Cartilage oligomeric m 33.1 22 0.00067 16.4 1.7 13 128-140 15-27 (45)
6 >3ibv_A Exportin-T; karyopheri 20.0 38 0.0011 15.0 0.9 54 32-96 34-87 (95)
7 >2d5u_A N-glycanase 1; pngase, 18.6 64 0.0019 13.6 2.0 17 123-139 50-66 (79)
8 >1iq0_A Arginyl-tRNA synthetas 17.7 68 0.002 13.5 2.8 15 126-140 40-54 (80)
9 >2ijd_1 Picornain 3C, RNA-dire 16.1 42 0.0013 14.7 0.4 34 29-62 25-58 (103)
10 >1yks_A Genome polyprotein [co 15.5 71 0.0021 13.3 1.4 14 2-15 36-49 (53)
No 1
>>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} (A:1-126)
Probab=100.00 E-value=2.3e-36 Score=241.67 Aligned_cols=106 Identities=30% Similarity=0.516 Sum_probs=93.4
Q ss_pred CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHCCC
Q ss_conf 53012789999999836669999999999989999999999766667787504656744325762766663112321016
Q gi|254780697|r 2 FQGTPVFNEFKKFIARGNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPLSSEIKSSLISEARKQ 81 (141)
Q Consensus 2 ~k~~~mlkeFK~Fi~rGNVidLAVavIIG~AF~~iV~slv~diimPlIg~i~g~g~~f~~~~~~l~~~~~~~~~~~~~~~ 81 (141)
.+.++|++|||||++||||+|||||||||+||+++|+|||+|||||+||+++|+ .+++.+.+.+ ...+
T Consensus 19 ~~~~~~lkeFk~Fi~rGNVidLAVgvIIG~AF~~iV~slV~diImPlI~~~~~~-~~~~~~~~~~-----------~~~~ 86 (126)
T 2oar_A 19 DDDKHMLKGFKEFLARGNIVDLAVAVVIGTAFTALVTKFTDSIITPLINRIGVN-AQSDVGILRI-----------GIGG 86 (126)
T ss_dssp -----CHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CEEECCCCTT-----------TCCS
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCC-CCCHHHHHHE-----------ECCC
T ss_conf 899999999999996387578889999999999999999987433324423567-5212344310-----------0258
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCC
Q ss_conf 60000989999999999999999-999999999841234
Q gi|254780697|r 82 GAVFAYGSFASVLVNFFILAGVV-FVLIQFMNKLVKQTE 119 (141)
Q Consensus 82 ~~~i~yG~fl~aiI~FlIiA~vi-Flivk~~nk~~~~~e 119 (141)
++++.||+|++++|||+|+|+++ |+++|++||+++|+|
T Consensus 87 ~~~i~yG~fl~aiI~FlIia~viyF~ivk~~nk~~kk~e 125 (126)
T 2oar_A 87 GQTIDLNVLLSAAINFFLIAFAVYFLVVLPYNTLRKKGE 125 (126)
T ss_dssp CEEECHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTC
T ss_pred CCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 705750188999999999999999999999998732578
No 2
>>3hzq_A Large-conductance mechanosensitive channel; intermediate state mechanosensitive channel osmoregulation, cell membrane, ION transport; 3.82A {Staphylococcus aureus subsp} (A:33-114)
Probab=99.94 E-value=4.6e-27 Score=185.03 Aligned_cols=82 Identities=35% Similarity=0.760 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 66999999999998999999999976666778750465674432576276666311232101660000989999999999
Q gi|254780697|r 19 NVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPLSSEIKSSLISEARKQGAVFAYGSFASVLVNFF 98 (141)
Q Consensus 19 NVidLAVavIIG~AF~~iV~slv~diimPlIg~i~g~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~i~yG~fl~aiI~Fl 98 (141)
||+|||||||||+||+++|+|||+|+|||+||+++| ++|++++. ++..++||+|++++|||+
T Consensus 1 NVidLAVaviiG~AF~~iV~slv~~iI~PlI~~~~g-~~~~~~~~-----------------~~~~i~yG~fi~aii~Fl 62 (82)
T 3hzq_A 1 NVLDLAIAVVMGAAFNKIICSLVENIIMPLIGKIFG-SVDFAKEW-----------------SFWGIKYGLFIQSVIDFI 62 (82)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSSS-CSCCCTTC-----------------CCSSCCCTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHC-----------------CCHHCCHHHHHHHHHHHH
T ss_conf 769999999999999999999999989998999857-76122111-----------------200110689999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999984123
Q gi|254780697|r 99 ILAGVVFVLIQFMNKLVKQT 118 (141)
Q Consensus 99 IiA~viFlivk~~nk~~~~~ 118 (141)
|+|+++|+++|++||+++|+
T Consensus 63 Iia~viFliVk~~nk~~~k~ 82 (82)
T 3hzq_A 63 IIAFALFIFVKIANTLMKKE 82 (82)
T ss_dssp HHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999986169
No 3
>>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} (A:)
Probab=47.57 E-value=16 Score=17.25 Aligned_cols=22 Identities=32% Similarity=0.650 Sum_probs=18.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 4889868356999999999640
Q gi|254780697|r 119 ENVKNPPAEVQLLTEIRDLLQK 140 (141)
Q Consensus 119 e~~~~~~~e~~LL~EIRDlLkk 140 (141)
+...++|++.++..+||+.|+.
T Consensus 6 ~~~~~~psd~ei~~~i~~iL~~ 27 (70)
T 1q1v_A 6 KKLKKPPTDEELKETIKKLLAS 27 (70)
T ss_dssp CCCCCCCCHHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHH
T ss_conf 7566898999999999999983
No 4
>>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli} (B:)
Probab=40.91 E-value=24 Score=16.24 Aligned_cols=29 Identities=14% Similarity=0.370 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHCCCC
Q ss_conf 9999999999999-9999999998412348
Q gi|254780697|r 92 SVLVNFFILAGVV-FVLIQFMNKLVKQTEN 120 (141)
Q Consensus 92 ~aiI~FlIiA~vi-Flivk~~nk~~~~~e~ 120 (141)
+.++-++++-.+. |++++|=.|-+++.++
T Consensus 4 ~~~~~~v~i~~ifYFllIRPQ~Kr~Ke~~~ 33 (37)
T 2rdd_B 4 SLILMLVVFGLIFYFMILRPQQKRTKEHKK 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf 899999999999999993721788999999
No 5
>>1mz9_A Cartilage oligomeric matrix protein; pentameric coiled-coil domain, protein binding; HET: VDY; 1.70A {Mus musculus} (A:)
Probab=33.07 E-value=22 Score=16.38 Aligned_cols=13 Identities=31% Similarity=0.631 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHC
Q ss_conf 6999999999640
Q gi|254780697|r 128 VQLLTEIRDLLQK 140 (141)
Q Consensus 128 ~~LL~EIRDlLkk 140 (141)
.++|.|.||+|++
T Consensus 15 nq~L~Elre~lrq 27 (45)
T 1mz9_A 15 NAALQDVRELLRQ 27 (45)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999999
No 6
>>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* (A:736-830)
Probab=20.02 E-value=38 Score=14.97 Aligned_cols=54 Identities=17% Similarity=0.243 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 89999999999766667787504656744325762766663112321016600009899999999
Q gi|254780697|r 32 AFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPLSSEIKSSLISEARKQGAVFAYGSFASVLVN 96 (141)
Q Consensus 32 AF~~iV~slv~diimPlIg~i~g~g~~f~~~~~~l~~~~~~~~~~~~~~~~~~i~yG~fl~aiI~ 96 (141)
-|.+=+..+.+++++|++..++.. ++.+..+++ .........=.|=+|++++++
T Consensus 34 kfk~~i~~~l~~ll~Pl~~~If~~----------L~~~~~~td-~~re~~~Lkr~y~~fl~~i~~ 87 (95)
T 3ibv_A 34 IYKDNMMEITNRMLPTLLMRIFSS----------LSAAPQGTD-DAVKQNDLRKSYISFILQLLN 87 (95)
T ss_dssp HTTTTSHHHHHHHHHHHHHHHHHH----------TTC----CC-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHCCCCCCH-HHHHCHHHHHHHHHHHHHHHH
T ss_conf 988876799999999999999999----------844344753-056479999999999999998
No 7
>>2d5u_A N-glycanase 1; pngase, hydrolase; NMR {Mus musculus} (A:1-52,A:98-124)
Probab=18.63 E-value=64 Score=13.60 Aligned_cols=17 Identities=53% Similarity=0.845 Sum_probs=13.0
Q ss_pred CCCCHHHHHHHHHHHHH
Q ss_conf 86835699999999964
Q gi|254780697|r 123 NPPAEVQLLTEIRDLLQ 139 (141)
Q Consensus 123 ~~~~e~~LL~EIRDlLk 139 (141)
.|+..++-|+.|||+.+
T Consensus 50 npsasveqlqkirdlia 66 (79)
T 2d5u_A 50 NPSASVEQLQKIRDLIA 66 (79)
T ss_dssp SSSSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
T ss_conf 99898999999999999
No 8
>>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} (A:153-232)
Probab=17.65 E-value=68 Score=13.46 Aligned_cols=15 Identities=20% Similarity=0.293 Sum_probs=9.7
Q ss_pred CHHHHHHHHHHHHHC
Q ss_conf 356999999999640
Q gi|254780697|r 126 AEVQLLTEIRDLLQK 140 (141)
Q Consensus 126 ~e~~LL~EIRDlLkk 140 (141)
++..+..|+|+.++|
T Consensus 40 e~p~l~~e~~~~~~k 54 (80)
T 1iq0_A 40 EYERLQPAIEEVLHA 54 (80)
T ss_dssp TTGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 777778888999999
No 9
>>2ijd_1 Picornain 3C, RNA-directed RNA polymerase; RNA-dependent RNA polymerase, picornavirus, protease, hydrolase, transferase; 3.40A {Human poliovirus 1 mahoney} (1:398-422,1:472-549)
Probab=16.06 E-value=42 Score=14.70 Aligned_cols=34 Identities=12% Similarity=0.249 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 9998999999999976666778750465674432
Q gi|254780697|r 29 IGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNY 62 (141)
Q Consensus 29 IG~AF~~iV~slv~diimPlIg~i~g~g~~f~~~ 62 (141)
-|...|.++||+++.|.+--.=.-...+..++..
T Consensus 25 ~G~P~TsIiNSIvN~I~i~~A~~~~~~~~~~~~v 58 (103)
T 2ijd_1 25 AGCSGTSIFNSMINNLIIRTLLLKTYKGIDLDHL 58 (103)
T ss_dssp HBSTTHHHHHHHHHHHHHHHHHHHHSSSCCGGGC
T ss_pred CCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 8875467104599999999999986466686758
No 10
>>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} (A:388-440)
Probab=15.54 E-value=71 Score=13.32 Aligned_cols=14 Identities=29% Similarity=0.448 Sum_probs=6.6
Q ss_pred CCCCHHHHHHHHHH
Q ss_conf 53012789999999
Q gi|254780697|r 2 FQGTPVFNEFKKFI 15 (141)
Q Consensus 2 ~k~~~mlkeFK~Fi 15 (141)
.+...=+++|++|+
T Consensus 36 ~~d~~~L~~F~~fA 49 (53)
T 1yks_A 36 SSDQSALSEFIKFA 49 (53)
T ss_dssp SSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
T ss_conf 36522688899987
Done!