RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780697|ref|YP_003065110.1| large conductance
mechanosensitive channel protein [Candidatus Liberibacter asiaticus
str. psy62]
         (141 letters)



>gnl|CDD|32153 COG1970, MscL, Large-conductance mechanosensitive channel [Cell
           envelope biogenesis, outer membrane].
          Length = 130

 Score =  121 bits (305), Expect = 7e-29
 Identities = 62/140 (44%), Positives = 89/140 (63%), Gaps = 19/140 (13%)

Query: 7   VFNEFKKFIARGNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPL 66
           +  EFK+F  RGNV+DL+VG+IIG AF ++V S+V DI+MPL+G ++G G DFSN F+ L
Sbjct: 3   MLKEFKEFALRGNVVDLAVGVIIGAAFGKIVTSLVNDIIMPLIGLLVG-GLDFSNLFITL 61

Query: 67  SSEIKSSLISEARKQGAVFAYGSFASVLVNFFILAGVVFVLIQFMNKLVKQTENVKN--- 123
                            V AYG+F   ++NF I+A  +F++++ +NKL ++ E  +    
Sbjct: 62  ------------GIPAVVIAYGAFIQAVINFLIIAFAIFLVVKAINKLRRKLEKEEPEAP 109

Query: 124 ---PPAEVQLLTEIRDLLQK 140
              PPAE  LLTEIRDLL+K
Sbjct: 110 APAPPAEEVLLTEIRDLLKK 129


>gnl|CDD|145084 pfam01741, MscL, Large-conductance mechanosensitive channel, MscL. 
          Length = 127

 Score =  105 bits (263), Expect = 6e-24
 Identities = 57/133 (42%), Positives = 83/133 (62%), Gaps = 14/133 (10%)

Query: 9   NEFKKFIARGNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPLSS 68
            EFK+F  RGNV+DL+VG++IGGAF ++V S+V DI+MPL+G ++G G DFS+  + L  
Sbjct: 3   KEFKEFAMRGNVVDLAVGVVIGGAFGKIVSSLVADIIMPLIGRLLG-GVDFSDLSITLIG 61

Query: 69  EIKSSLISEARKQGAVFAYGSFASVLVNFFILAGVVFVLIQFMNKLVKQTE---NVKNPP 125
           ++                YG F   ++NF I+A  +F++I+ +NKL K+ E       P 
Sbjct: 62  DVG----------AVTLNYGLFIQAVINFLIIAFAIFLVIKAINKLRKKEEVEEAEAVPD 111

Query: 126 AEVQLLTEIRDLL 138
           A+  LLTEIRDLL
Sbjct: 112 AQEVLLTEIRDLL 124


>gnl|CDD|39764 KOG4564, KOG4564, KOG4564, Adenylate cyclase-coupled calcitonin
           receptor [Signal transduction mechanisms].
          Length = 473

 Score = 26.9 bits (59), Expect = 2.0
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 89  SFASVLVNFFILAGVVFVLIQ 109
              ++LVNF  L  +V +L+ 
Sbjct: 316 ILLAILVNFIFLINIVRILVT 336


>gnl|CDD|143404 cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase
           and ALDH family members 6A1 and 6B2.  Methylmalonate
           semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27)
           [acylating] from Bacillus subtilis is involved in valine
           metabolism and catalyses the NAD+- and CoA-dependent
           oxidation of methylmalonate semialdehyde into
           propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and
           Arabidopsis MMSDH ALDH6B2 are also present in this CD.
          Length = 478

 Score = 26.7 bits (60), Expect = 2.4
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 10/66 (15%)

Query: 23  LSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPLSSE-----IKSSLISE 77
           LSV + +G   +  +  +VE      VG     G D      P+ S      I+  LI  
Sbjct: 281 LSVAVAVGDEADEWIPKLVERAKKLKVGAGDDPGADMG----PVISPAAKERIE-GLIES 335

Query: 78  ARKQGA 83
             ++GA
Sbjct: 336 GVEEGA 341


>gnl|CDD|30370 COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid
           metabolism].
          Length = 245

 Score = 26.4 bits (58), Expect = 3.1
 Identities = 17/57 (29%), Positives = 25/57 (43%)

Query: 78  ARKQGAVFAYGSFASVLVNFFILAGVVFVLIQFMNKLVKQTENVKNPPAEVQLLTEI 134
           A+K+G     G  A       IL   + + I+++      TEN K P  EV  L E+
Sbjct: 31  AKKRGLPRIEGHKAGAKALREILEWCLELGIKYLTLYAFSTENWKRPKEEVSFLMEL 87


>gnl|CDD|144739 pfam01255, Prenyltransf, Putative undecaprenyl diphosphate
           synthase.  Previously known as uncharacterized protein
           family UPF0015, a single member of this family has been
           identified as an undecaprenyl diphosphate synthase.
          Length = 222

 Score = 26.0 bits (58), Expect = 3.7
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)

Query: 118 TENVKNPPAEVQLLTE-IRDLLQK 140
           TEN K P  EV  L E + + L++
Sbjct: 49  TENWKRPKEEVDFLMELLEEKLRR 72


>gnl|CDD|38080 KOG2869, KOG2869, KOG2869, Meiotic cell division protein
           Pelota/DOM34 [Translation, ribosomal structure and
           biogenesis].
          Length = 379

 Score = 26.0 bits (57), Expect = 4.1
 Identities = 9/31 (29%), Positives = 14/31 (45%)

Query: 95  VNFFILAGVVFVLIQFMNKLVKQTENVKNPP 125
           V   ++A   FV  QFM+ L +Q   +    
Sbjct: 202 VKCVVVASPGFVKDQFMDYLFQQAVKLDLKL 232


>gnl|CDD|33296 COG3493, CitS, Na+/citrate symporter [Energy production and
           conversion].
          Length = 438

 Score = 25.9 bits (57), Expect = 4.3
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 11/89 (12%)

Query: 18  GNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPLSSEIKSSLISE 77
           G V   +VGI++G  F    Q  +  +++P++G  MG G       +PL SEI SS+   
Sbjct: 147 GMVGAAAVGILVGLLFGLSFQDTMMYVVLPIMGGGMGAGA------VPL-SEIYSSIT-- 197

Query: 78  ARKQGAVFAYGSFASVLVNFF--ILAGVV 104
              Q   F+    A  + N F  I A ++
Sbjct: 198 GGSQEEYFSQLIPALTIGNVFAIICAALL 226


>gnl|CDD|143938 pfam00171, Aldedh, Aldehyde dehydrogenase family.  This family of
           dehydrogenases act on aldehyde substrates. Members use
           NADP as a cofactor. The family includes the following
           members: The prototypical members are the aldehyde
           dehydrogenases EC:1.2.1.3. Succinate-semialdehyde
           dehydrogenase EC:1.2.1.16. Lactaldehyde dehydrogenase
           EC:1.2.1.22. Benzaldehyde dehydrogenase EC:1.2.1.28.
           Methylmalonate-semialdehyde dehydrogenase EC:1.2.1.27.
           Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9.
           Delta-1-pyrroline-5-carboxylate dehydrogenase EC:
           1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10.
           Glutamate-5-semialdehyde dehydrogenase EC:1.2.1.41. This
           family also includes omega crystallin, an eye lens
           protein from squid and octopus that has little aldehyde
           dehydrogenase activity.
          Length = 459

 Score = 25.6 bits (57), Expect = 4.7
 Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 24/107 (22%)

Query: 21  IDLSVGIIIGGAF----------NR--VVQSIVEDIMMPLV----GCVMGNGTDFSNYFL 64
           +D +V   + GAF          +R  V +SI ++ +  LV       +G+  D      
Sbjct: 250 LDAAVEGAVFGAFGNAGQVCTAGSRLLVHESIYDEFVERLVEAAKSLKVGDPLDPDTDIG 309

Query: 65  PLSSEIKS----SLISEARKQGAVFAYGSFASVLVNFF----ILAGV 103
           PL S+ +     S I +A+++GA    G  A +   +F    +LA V
Sbjct: 310 PLISKKQRERVLSYIEDAKEEGAKLLCGGEAGLEKGYFVEPTVLADV 356


>gnl|CDD|36292 KOG1076, KOG1076, KOG1076, Translation initiation factor 3, subunit
           c (eIF-3c) [Translation, ribosomal structure and
           biogenesis].
          Length = 843

 Score = 25.0 bits (54), Expect = 7.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 113 KLVKQTENVKNPPAEVQLLTEIRDLLQK 140
           K V + ENVK P   ++ L E+ D L +
Sbjct: 92  KEVDEKENVKVPRFYIKTLVELEDFLNE 119


>gnl|CDD|147666 pfam05625, PAXNEB, PAXNEB protein.  PAXNEB or PAX6 neighbour is
           found in several eukaryotic organisms. PAXNED is an RNA
           polymerase II Elongator protein subunit. It is part of
           the HAP subcomplex of Elongator, which is a six-subunit
           component of the RNA polymerase II holoenzyme. The HAP
           subcomplex is required for Elongator structural
           integrity and histone acetyltransferase activity. This
           protein family has a P-loop motif. However its sequence
           has degraded in many members of the family.
          Length = 353

 Score = 24.6 bits (54), Expect = 9.8
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 18/59 (30%)

Query: 64  LPLSSEIKSSLISEARKQGAVFAYGSFASVLVNFFILAGVV-----FVLI---QFMNKL 114
           LPL S   S LI E            FASVL+ +F   GVV     FV     Q++ +L
Sbjct: 43  LPLGS---SLLIEEDG-------TTDFASVLLRYFAAEGVVQNHHVFVASLPEQWLREL 91


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.325    0.141    0.395 

Gapped
Lambda     K      H
   0.267   0.0736    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,647,277
Number of extensions: 81807
Number of successful extensions: 378
Number of sequences better than 10.0: 1
Number of HSP's gapped: 371
Number of HSP's successfully gapped: 28
Length of query: 141
Length of database: 6,263,737
Length adjustment: 84
Effective length of query: 57
Effective length of database: 4,448,581
Effective search space: 253569117
Effective search space used: 253569117
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (23.8 bits)