RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780697|ref|YP_003065110.1| large conductance
mechanosensitive channel protein [Candidatus Liberibacter asiaticus
str. psy62]
(141 letters)
>gnl|CDD|184414 PRK13952, mscL, large-conductance mechanosensitive channel;
Provisional.
Length = 142
Score = 164 bits (418), Expect = 7e-42
Identities = 66/138 (47%), Positives = 98/138 (71%), Gaps = 6/138 (4%)
Query: 8 FNEFKKFIARGNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPLS 67
EFK+F +GNV+DL+VG+IIGGAF ++V S+V D++MP++G + G G DFSNYF+ L
Sbjct: 4 LKEFKEFALKGNVMDLAVGVIIGGAFGKIVDSLVNDLIMPIIGLITG-GLDFSNYFIQLG 62
Query: 68 SEIKSSLIS--EARKQG-AVFAYGSFASVLVNFFILAGVVFVLIQFMNKLVKQTENV--K 122
+ + A+K G AVFAYG+F +VL+NF ILA ++F++++ +N+L ++ E
Sbjct: 63 GAPAGNPTTLAAAKKAGVAVFAYGNFITVLINFLILAFIIFLMVKAINRLRRKEEAAPPP 122
Query: 123 NPPAEVQLLTEIRDLLQK 140
PP +V LL EIRDLL+K
Sbjct: 123 APPEDVVLLREIRDLLKK 140
>gnl|CDD|179069 PRK00567, mscL, large-conductance mechanosensitive channel;
Reviewed.
Length = 134
Score = 133 bits (336), Expect = 2e-32
Identities = 59/139 (42%), Positives = 86/139 (61%), Gaps = 13/139 (9%)
Query: 7 VFNEFKKFIARGNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPL 66
+ EFK+F RGNV+DL+VG+IIG AF ++V S+V+DI+MP +G ++G G DFSN + L
Sbjct: 1 MLKEFKEFAMRGNVVDLAVGVIIGAAFGKIVSSLVDDIIMPPIGLLIG-GVDFSNLAIVL 59
Query: 67 SSEIKSSLISEARKQGAV-FAYGSFASVLVNFFILAGVVFVLIQFMNKLVKQTENVKNPP 125
AV YG F + +++F I+A +F+L++ +NKL ++ E PP
Sbjct: 60 G--------EAQGDAPAVVINYGVFINAVIDFLIIAFAIFLLVKLINKLRRKKEEPAAPP 111
Query: 126 A---EVQLLTEIRDLLQKN 141
A E LLTEIRDLL+
Sbjct: 112 APTTEEVLLTEIRDLLKAQ 130
>gnl|CDD|184416 PRK13955, mscL, large-conductance mechanosensitive channel;
Provisional.
Length = 130
Score = 106 bits (267), Expect = 2e-24
Identities = 52/139 (37%), Positives = 81/139 (58%), Gaps = 20/139 (14%)
Query: 7 VFNEFKKFIARGNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPL 66
++NEFKKF +GNVIDL+VG++IG AF ++V S+V+DI+ PL+G V+G G DF++
Sbjct: 1 MWNEFKKFAFKGNVIDLAVGVVIGAAFGKIVSSLVKDIITPLLGMVLG-GVDFTDLKFTF 59
Query: 67 SSEIKSSLISEARKQGAVFAYGSFASVLVNFFILAGVVFVLIQFMNKLVKQT-----ENV 121
+ YG+F + +F I+A +F+ ++ NKL + E +
Sbjct: 60 GK--------------SSIMYGNFIQTIFDFLIIAASIFMFVKVFNKLTSKKEEEKEEEI 105
Query: 122 KNPPAEVQLLTEIRDLLQK 140
P E +LL EIRDLL++
Sbjct: 106 PEPTKEEELLGEIRDLLKQ 124
>gnl|CDD|184415 PRK13953, mscL, large-conductance mechanosensitive channel;
Provisional.
Length = 125
Score = 106 bits (265), Expect = 3e-24
Identities = 49/137 (35%), Positives = 80/137 (58%), Gaps = 18/137 (13%)
Query: 7 VFNEFKKFIARGNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPL 66
+ EF+ F +GNV+DL+V ++IG AF ++V S+V +I+MPLVG ++G G DFS+ L
Sbjct: 1 MLVEFRDFALKGNVLDLAVAVVIGAAFGKIVSSLVNNIIMPLVGVLLG-GLDFSD----L 55
Query: 67 SSEIKSSLISEARKQGAVFAYGSFASVLVNFFILAGVVFVLIQFMNKL---VKQTENVKN 123
S ++ S+I YG+F +V+F I+A +F+ ++ + +Q E
Sbjct: 56 SWKVGKSVIQ----------YGAFIQSIVDFLIIAFAIFIFVKVLTSFIKKKEQQEEETP 105
Query: 124 PPAEVQLLTEIRDLLQK 140
P + L EIRDLL++
Sbjct: 106 VPPTEEYLKEIRDLLKQ 122
>gnl|CDD|161771 TIGR00220, mscL, large conductance mechanosensitive channel
protein. Protein encodes a channel which opens in
response to a membrane stretch force. Probably serves as
an osmotic gauge. Carboxy terminus tends to be more
divergent across species with a high degree of sequence
conservation found at the N-terminus.
Length = 127
Score = 93.4 bits (232), Expect = 2e-20
Identities = 58/138 (42%), Positives = 85/138 (61%), Gaps = 18/138 (13%)
Query: 7 VFNEFKKFIARGNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPL 66
+ EFK+F RGNV+DL+VG++IGGAF ++V S+V DI+MPL+G ++G G DFS L
Sbjct: 1 FWKEFKEFAMRGNVVDLAVGVVIGGAFGKIVSSLVADIIMPLLGLLLG-GIDFSGLSFTL 59
Query: 67 SSEIKSSLISEARKQGAVFAYGSFASVLVNFFILAGVVFVLIQFMNKL-----VKQTENV 121
+ AV YG F ++NF I+A +F++I+ +NKL V++
Sbjct: 60 ------------QDAQAVGKYGEFIQNIINFLIIAFAIFMIIKAINKLRRKKKVEEEAAA 107
Query: 122 KNPPAEVQLLTEIRDLLQ 139
+ P A+ LLTEIRDLL+
Sbjct: 108 EAPDAQENLLTEIRDLLK 125
>gnl|CDD|172460 PRK13954, mscL, large-conductance mechanosensitive channel;
Provisional.
Length = 119
Score = 83.8 bits (207), Expect = 1e-17
Identities = 48/136 (35%), Positives = 81/136 (59%), Gaps = 20/136 (14%)
Query: 7 VFNEFKKFIARGNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPL 66
+ EFK+F +GNV+DL++ +++G AFN+++ S+VE+I+MPL+G + G+ DF+ +
Sbjct: 1 MLKEFKEFALKGNVLDLAIAVVMGAAFNKIISSLVENIIMPLIGKIFGS-VDFAKEWSFW 59
Query: 67 SSEIKSSLISEARKQGAVFAYGSFASVLVNFFILAGVVFVLIQFMNKLVKQTENVKNPPA 126
IK YG F +++F I+A +F+ ++ N L+K+ E +
Sbjct: 60 G--IK---------------YGLFIQSVIDFIIIAFALFIFVKIANTLMKKEEAEEEAVV 102
Query: 127 E--VQLLTEIRDLLQK 140
E V LLTEIRDLL++
Sbjct: 103 EENVVLLTEIRDLLRE 118
>gnl|CDD|177582 PHA03312, PHA03312, helicase-primase subunit BBLF2/3; Provisional.
Length = 709
Score = 27.7 bits (61), Expect = 1.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 111 MNKLVKQTENVKNPPAEVQLLTEIRDLLQK 140
+++L + E K PP+ LLT +RDL ++
Sbjct: 582 LDQLAARPEADKAPPSHDHLLTLVRDLTRR 611
>gnl|CDD|178762 PLN03223, PLN03223, Polycystin cation channel protein; Provisional.
Length = 1634
Score = 26.4 bits (58), Expect = 2.5
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 94 LVNFFILAGVVFVLIQFMNKLV 115
L++FF++ G+VFV F+ ++
Sbjct: 1330 LMHFFVIFGMVFVGYAFIGHVI 1351
>gnl|CDD|178260 PLN02654, PLN02654, acetate-CoA ligase.
Length = 666
Score = 26.4 bits (58), Expect = 2.9
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 64 LPLSSEIKSSLISEARKQGAVFA 86
+P S E++ SLI R Q FA
Sbjct: 588 VPYSEELRKSLILTVRNQIGAFA 610
>gnl|CDD|181675 PRK09162, PRK09162, hypoxanthine-guanine
phosphoribosyltransferase; Provisional.
Length = 181
Score = 26.0 bits (58), Expect = 4.1
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 32 AFNRVVQSIVEDI--MMPLVGCVMGNGTDFSNYFLP 65
A +R+ I D+ PLV CVMG G F+ LP
Sbjct: 25 AIDRMADEITADLADENPLVLCVMGGGLVFTGQLLP 60
>gnl|CDD|184359 PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional.
Length = 440
Score = 25.6 bits (57), Expect = 4.3
Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 3/24 (12%)
Query: 93 VLVNFFILAGVVFV-LIQFMNKLV 115
VL+ FFILA +FV LI+F KL
Sbjct: 152 VLLAFFILAIQLFVTLIEF--KLT 173
>gnl|CDD|129865 TIGR00783, ccs, citrate carrier protein, CCS family. These
proteins are members of the Citrate:Cation Symporter
(CCS) Family (TC 2.A.24). These proteins have 12 GES
predicted transmembrane regions. Most members of the CCS
family catalyze citrate uptake with either Na+ or H+ as
the cotransported cation. However, one member is
specific for L-malate and probably functions by a proton
symport mechanism.
Length = 347
Score = 25.8 bits (57), Expect = 4.5
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 14/99 (14%)
Query: 11 FKKFI---ARGNVIDLSVGIIIGGAFNRVVQSIVEDIMMPLVGCVMGNGTDFSNYFLPLS 67
+FI G V+ + VGI++G F + I+MP++ +G G +PL
Sbjct: 51 LMRFIPPALIGMVLAVIVGILVGTLFGLGFDHSLMYIVMPIMAGGVGAGI------VPL- 103
Query: 68 SEIKSSLISEARKQGAVFAYGSFASVLVNFF--ILAGVV 104
S I S++ R +F+ A ++ N F I AG++
Sbjct: 104 SIIYSAIT--GRSSEEIFSQLIPAVIIGNIFAIICAGLL 140
>gnl|CDD|183790 PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransferase; Reviewed.
Length = 282
Score = 25.2 bits (56), Expect = 5.8
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 94 LVNFFILAGVVFVLIQFMNKLVKQ 117
L F +L V F+L+ +N L
Sbjct: 92 LALFVVLVLVAFLLVLTLNTLTIW 115
>gnl|CDD|130303 TIGR01236, D1pyr5carbox1, delta-1-pyrroline-5-carboxylate
dehydrogenase, group 1. This model represents one of
two related branches of delta-1-pyrroline-5-carboxylate
dehydrogenase. The two branches are not as closely
related to each other as some aldehyde dehydrogenases
are to this branch, and separate models are built for
this reason. The enzyme is the second of two in the
degradation of proline to glutamate.
Length = 533
Score = 25.1 bits (55), Expect = 6.2
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 15/76 (19%)
Query: 60 SNYFLP--LSSEIKSSLISEARKQ--GAVFAYGSFASVLVNFFILAGVVFVLIQFMNKLV 115
S ++P + K L++E + G + +F +++ + K V
Sbjct: 322 SRLYVPHSVWPRFKDELLAELAEVKVGDPDDFSNFMGAVID-----------ERSFVKNV 370
Query: 116 KQTENVKNPPAEVQLL 131
K E K PAE+ +L
Sbjct: 371 KYIERAKGDPAELTIL 386
>gnl|CDD|163239 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export.
Length = 694
Score = 24.8 bits (55), Expect = 9.0
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 4/23 (17%)
Query: 90 FASVLVNFFILAGVVFVLIQFMN 112
AS+L+N LA +FV MN
Sbjct: 154 IASLLINLLALASPLFV----MN 172
>gnl|CDD|184876 PRK14876, PRK14876, conjugal transfer mating pair stabilization
protein TraN; Provisional.
Length = 928
Score = 24.5 bits (53), Expect = 9.2
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 56 GTDFSNYFLPLSSEIKSSLISEARKQGAVFAYGSFASVLVN 96
G + SN F S ++ IS + F G +SV VN
Sbjct: 47 GQNLSNSFKSSSGTVQDGTISMPTLKDGQFQMGGGSSVNVN 87
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.325 0.141 0.395
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,282,354
Number of extensions: 136186
Number of successful extensions: 456
Number of sequences better than 10.0: 1
Number of HSP's gapped: 442
Number of HSP's successfully gapped: 45
Length of query: 141
Length of database: 5,994,473
Length adjustment: 84
Effective length of query: 57
Effective length of database: 4,179,401
Effective search space: 238225857
Effective search space used: 238225857
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (23.8 bits)